Source Name	Provider	Material Type	Term Source REF	Characteristics[Organism]	Term Source REF	Characteristics[Sex]	Term Source REF	Characteristics[DiseaseState]	Term Source REF	Comment[OCG Cohort]	Sample Name	Material Type	Term Source REF	Characteristics[OrganismPart]	Term Source REF	Description	Protocol REF	Performer	Extract Name	Material Type	Term Source REF	Comment[SRA_SAMPLE]	Protocol REF	Performer	Extract Name	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Comment[NOMINAL_LENGTH]	Comment[LIBRARY_NAME]	Comment[SRA_EXPERIMENT]	Description	Protocol REF	Performer	Date	Assay Name	Technology Type	Term Source REF	Comment[SPOT_LENGTH]	Protocol REF	Parameter Value[Software Versions]	Protocol REF	Derived Array Data File	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[ASSEMBLY_NAME]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-02D	DNA	EFO	SRS637571	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABLDZ-04A-02D A42746 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42746	SRX598012	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PABLDZ-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PABLDZ-04A-02D A42746 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42746_1_lane_dupsFlagged.bam	SRR1395264	@dbgap@:reads/SRP012000/SRS637571/SRX598012/SRR1395264/SRR1395264.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PABLDZ-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PABLDZ-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-02D	DNA	EFO	SRS489690	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABLDZ-09A-02D A41853 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41853	SRX593349	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PABLDZ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PABLDZ-09A-02D A41853 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41853_1_lane_dupsFlagged.bam	SRR1385860	@dbgap@:reads/SRP012000/SRS489690/SRX593349/SRR1385860/SRR1385860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PABLDZ-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PABLDZ-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-04A-02D	DNA	EFO	SRS637536	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-04A-02D A42733 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42733	SRX597974	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PADYIR-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PADYIR-04A-02D A42733 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42733_1_lane_dupsFlagged.bam	SRR1395270	@dbgap@:reads/SRP012000/SRS637536/SRX597974/SRR1395270/SRR1395270.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PADYIR-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PADYIR-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-04A-02D	DNA	EFO	SRS637536	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-04A-02D A42733 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42733	SRX597974	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PADYIR-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PADYIR-04A-02D A42733 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42733_1_lane_dupsFlagged.bam	SRR1395270	@dbgap@:reads/SRP012000/SRS637536/SRX597974/SRR1395270/SRR1395270.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PADYIR-04A-02D_TARGET-20-PADYIR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-04A-02D	DNA	EFO	SRS637536	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-04A-02D A42733 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42733	SRX597974	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PADYIR-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PADYIR-04A-02D A42733 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42733_1_lane_dupsFlagged.bam	SRR1395270	@dbgap@:reads/SRP012000/SRS637536/SRX597974/SRR1395270/SRR1395270.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PADYIR-04A-02D_TARGET-20-PADYIR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01D	DNA	EFO	SRS540695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-09A-01D A41847 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41847	SRX593326	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PADYIR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PADYIR-09A-01D A41847 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41847_1_lane_dupsFlagged.bam	SRR1385828	@dbgap@:reads/SRP012000/SRS540695/SRX593326/SRR1385828/SRR1385828.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PADYIR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PADYIR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01D	DNA	EFO	SRS540695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-09A-01D A41847 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41847	SRX593326	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PADYIR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PADYIR-09A-01D A41847 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41847_1_lane_dupsFlagged.bam	SRR1385828	@dbgap@:reads/SRP012000/SRS540695/SRX593326/SRR1385828/SRR1385828.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PADYIR-09A-01D_TARGET-20-PADYIR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01D	DNA	EFO	SRS540695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-09A-01D A41847 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41847	SRX593326	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PADYIR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PADYIR-09A-01D A41847 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41847_1_lane_dupsFlagged.bam	SRR1385828	@dbgap@:reads/SRP012000/SRS540695/SRX593326/SRR1385828/SRR1385828.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PADYIR-09A-01D_TARGET-20-PADYIR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-14A-01D A42640 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42640	SRX593992	"Specific Capture analysis of normal sample TARGET-20-PADYIR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PADYIR-14A-01D A42640 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42640_1_lane_dupsFlagged.bam	SRR1386480	@dbgap@:reads/SRP012000/SRS540696/SRX593992/SRR1386480/SRR1386480.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PADYIR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PADYIR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-14A-01D A42640 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42640	SRX593992	"Specific Capture analysis of normal sample TARGET-20-PADYIR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PADYIR-14A-01D A42640 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42640_1_lane_dupsFlagged.bam	SRR1386480	@dbgap@:reads/SRP012000/SRS540696/SRX593992/SRR1386480/SRR1386480.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PADYIR-04A-02D_TARGET-20-PADYIR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-14A-01D A42640 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42640	SRX593992	"Specific Capture analysis of normal sample TARGET-20-PADYIR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PADYIR-14A-01D A42640 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42640_1_lane_dupsFlagged.bam	SRR1386480	@dbgap@:reads/SRP012000/SRS540696/SRX593992/SRR1386480/SRR1386480.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PADYIR-04A-02D_TARGET-20-PADYIR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-14A-01D A42640 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42640	SRX593992	"Specific Capture analysis of normal sample TARGET-20-PADYIR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PADYIR-14A-01D A42640 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42640_1_lane_dupsFlagged.bam	SRR1386480	@dbgap@:reads/SRP012000/SRS540696/SRX593992/SRR1386480/SRR1386480.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PADYIR-09A-01D_TARGET-20-PADYIR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-14A-01D	DNA	EFO	SRS540696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-14A-01D A42640 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42640	SRX593992	"Specific Capture analysis of normal sample TARGET-20-PADYIR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PADYIR-14A-01D A42640 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42640_1_lane_dupsFlagged.bam	SRR1386480	@dbgap@:reads/SRP012000/SRS540696/SRX593992/SRR1386480/SRR1386480.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PADYIR-09A-01D_TARGET-20-PADYIR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-02D	DNA	EFO	SRS637510	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-04A-02D A42732 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42732	SRX597945	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PADZCG-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PADZCG-04A-02D A42732 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42732_1_lane_dupsFlagged.bam	SRR1395254	@dbgap@:reads/SRP012000/SRS637510/SRX597945/SRR1395254/SRR1395254.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PADZCG-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PADZCG-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-02D	DNA	EFO	SRS637510	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-04A-02D A42732 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42732	SRX597945	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PADZCG-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PADZCG-04A-02D A42732 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42732_1_lane_dupsFlagged.bam	SRR1395254	@dbgap@:reads/SRP012000/SRS637510/SRX597945/SRR1395254/SRR1395254.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PADZCG-04A-02D_TARGET-20-PADZCG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-02D	DNA	EFO	SRS637510	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-04A-02D A42732 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42732	SRX597945	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PADZCG-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PADZCG-04A-02D A42732 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42732_1_lane_dupsFlagged.bam	SRR1395254	@dbgap@:reads/SRP012000/SRS637510/SRX597945/SRR1395254/SRR1395254.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PADZCG-04A-02D_TARGET-20-PADZCG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-01D	DNA	EFO	SRS489658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-09A-01D A41848 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41848	SRX593306	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PADZCG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PADZCG-09A-01D A41848 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41848_1_lane_dupsFlagged.bam	SRR1385853	@dbgap@:reads/SRP012000/SRS489658/SRX593306/SRR1385853/SRR1385853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PADZCG-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PADZCG-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-01D	DNA	EFO	SRS489658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-09A-01D A41848 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41848	SRX593306	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PADZCG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PADZCG-09A-01D A41848 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41848_1_lane_dupsFlagged.bam	SRR1385853	@dbgap@:reads/SRP012000/SRS489658/SRX593306/SRR1385853/SRR1385853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PADZCG-09A-01D_TARGET-20-PADZCG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-01D	DNA	EFO	SRS489658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-09A-01D A41848 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41848	SRX593306	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PADZCG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PADZCG-09A-01D A41848 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41848_1_lane_dupsFlagged.bam	SRR1385853	@dbgap@:reads/SRP012000/SRS489658/SRX593306/SRR1385853/SRR1385853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PADZCG-09A-01D_TARGET-20-PADZCG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-14A-01D A42641 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42641	SRX593943	"Specific Capture analysis of normal sample TARGET-20-PADZCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PADZCG-14A-01D A42641 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42641_1_lane_dupsFlagged.bam	SRR1386463	@dbgap@:reads/SRP012000/SRS489656/SRX593943/SRR1386463/SRR1386463.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PADZCG-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PADZCG-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-14A-01D A42641 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42641	SRX593943	"Specific Capture analysis of normal sample TARGET-20-PADZCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PADZCG-14A-01D A42641 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42641_1_lane_dupsFlagged.bam	SRR1386463	@dbgap@:reads/SRP012000/SRS489656/SRX593943/SRR1386463/SRR1386463.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PADZCG-04A-02D_TARGET-20-PADZCG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-14A-01D A42641 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42641	SRX593943	"Specific Capture analysis of normal sample TARGET-20-PADZCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PADZCG-14A-01D A42641 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42641_1_lane_dupsFlagged.bam	SRR1386463	@dbgap@:reads/SRP012000/SRS489656/SRX593943/SRR1386463/SRR1386463.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PADZCG-04A-02D_TARGET-20-PADZCG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-14A-01D A42641 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42641	SRX593943	"Specific Capture analysis of normal sample TARGET-20-PADZCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PADZCG-14A-01D A42641 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42641_1_lane_dupsFlagged.bam	SRR1386463	@dbgap@:reads/SRP012000/SRS489656/SRX593943/SRR1386463/SRR1386463.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PADZCG-09A-01D_TARGET-20-PADZCG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-14A-01D	DNA	EFO	SRS489656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-14A-01D A42641 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42641	SRX593943	"Specific Capture analysis of normal sample TARGET-20-PADZCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PADZCG-14A-01D A42641 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42641_1_lane_dupsFlagged.bam	SRR1386463	@dbgap@:reads/SRP012000/SRS489656/SRX593943/SRR1386463/SRR1386463.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PADZCG-09A-01D_TARGET-20-PADZCG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-02D	DNA	EFO	SRS635597	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEAKL-09A-02D A41899 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41899	SRX593416	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEAKL-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAEAKL-09A-02D A41899 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41899_1_lane_dupsFlagged.bam	SRR1385874	@dbgap@:reads/SRP012000/SRS635597/SRX593416/SRR1385874/SRR1385874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAEAKL-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAEAKL-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-02D	DNA	EFO	SRS637513	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECCE-04A-02D A42731 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42731	SRX597949	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAECCE-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PAECCE-04A-02D A42731 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42731_1_lane_dupsFlagged.bam	SRR1395293	@dbgap@:reads/SRP012000/SRS637513/SRX597949/SRR1395293/SRR1395293.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAECCE-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAECCE-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01D	DNA	EFO	SRS489673	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECCE-09A-01D A41849 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41849	SRX593374	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAECCE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAECCE-09A-01D A41849 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41849_1_lane_dupsFlagged.bam	SRR1385789	@dbgap@:reads/SRP012000/SRS489673/SRX593374/SRR1385789/SRR1385789.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAECCE-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAECCE-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01D	DNA	EFO	SRS489688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEDKB-04A-01D A42202 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42202	SRX597697	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEDKB-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAEDKB-04A-01D A42202 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42202_1_lane_dupsFlagged.bam	SRR1395015	@dbgap@:reads/SRP012000/SRS489688/SRX597697/SRR1395015/SRR1395015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAEDKB-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAEDKB-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01D	DNA	EFO	SRS489688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEDKB-04A-01D A42202 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42202	SRX597697	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEDKB-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAEDKB-04A-01D A42202 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42202_1_lane_dupsFlagged.bam	SRR1395015	@dbgap@:reads/SRP012000/SRS489688/SRX597697/SRR1395015/SRR1395015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEDKB-04A-01D_TARGET-20-PAEDKB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01D	DNA	EFO	SRS489688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEDKB-04A-01D A42202 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42202	SRX597697	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEDKB-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAEDKB-04A-01D A42202 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42202_1_lane_dupsFlagged.bam	SRR1395015	@dbgap@:reads/SRP012000/SRS489688/SRX597697/SRR1395015/SRR1395015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEDKB-04A-01D_TARGET-20-PAEDKB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-09A-01D	DNA	EFO	SRS489687	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEDKB-09A-01D A41850 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41850	SRX593365	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEDKB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAEDKB-09A-01D A41850 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41850_1_lane_dupsFlagged.bam	SRR1385856	@dbgap@:reads/SRP012000/SRS489687/SRX593365/SRR1385856/SRR1385856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAEDKB-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAEDKB-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-09A-01D	DNA	EFO	SRS489687	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEDKB-09A-01D A41850 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41850	SRX593365	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEDKB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAEDKB-09A-01D A41850 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41850_1_lane_dupsFlagged.bam	SRR1385856	@dbgap@:reads/SRP012000/SRS489687/SRX593365/SRR1385856/SRR1385856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEDKB-09A-01D_TARGET-20-PAEDKB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-09A-01D	DNA	EFO	SRS489687	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEDKB-09A-01D A41850 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41850	SRX593365	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEDKB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAEDKB-09A-01D A41850 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41850_1_lane_dupsFlagged.bam	SRR1385856	@dbgap@:reads/SRP012000/SRS489687/SRX593365/SRR1385856/SRR1385856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEDKB-09A-01D_TARGET-20-PAEDKB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEDKB-10A-01D A42642 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42642	SRX593976	"Specific Capture analysis of normal sample TARGET-20-PAEDKB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PAEDKB-10A-01D A42642 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42642_1_lane_dupsFlagged.bam	SRR1386438	@dbgap@:reads/SRP012000/SRS489686/SRX593976/SRR1386438/SRR1386438.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAEDKB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAEDKB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEDKB-10A-01D A42642 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42642	SRX593976	"Specific Capture analysis of normal sample TARGET-20-PAEDKB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PAEDKB-10A-01D A42642 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42642_1_lane_dupsFlagged.bam	SRR1386438	@dbgap@:reads/SRP012000/SRS489686/SRX593976/SRR1386438/SRR1386438.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEDKB-04A-01D_TARGET-20-PAEDKB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEDKB-10A-01D A42642 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42642	SRX593976	"Specific Capture analysis of normal sample TARGET-20-PAEDKB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PAEDKB-10A-01D A42642 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42642_1_lane_dupsFlagged.bam	SRR1386438	@dbgap@:reads/SRP012000/SRS489686/SRX593976/SRR1386438/SRR1386438.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEDKB-04A-01D_TARGET-20-PAEDKB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEDKB-10A-01D A42642 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42642	SRX593976	"Specific Capture analysis of normal sample TARGET-20-PAEDKB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PAEDKB-10A-01D A42642 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42642_1_lane_dupsFlagged.bam	SRR1386438	@dbgap@:reads/SRP012000/SRS489686/SRX593976/SRR1386438/SRR1386438.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEDKB-09A-01D_TARGET-20-PAEDKB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-10A-01D	DNA	EFO	SRS489686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEDKB-10A-01D A42642 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42642	SRX593976	"Specific Capture analysis of normal sample TARGET-20-PAEDKB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PAEDKB-10A-01D A42642 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42642_1_lane_dupsFlagged.bam	SRR1386438	@dbgap@:reads/SRP012000/SRS489686/SRX593976/SRR1386438/SRR1386438.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEDKB-09A-01D_TARGET-20-PAEDKB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01D	DNA	EFO	SRS489847	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-04A-01D A42203 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42203	SRX597718	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEERJ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAEERJ-04A-01D A42203 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42203_1_lane_dupsFlagged.bam	SRR1394958	@dbgap@:reads/SRP012000/SRS489847/SRX597718/SRR1394958/SRR1394958.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAEERJ-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAEERJ-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01D	DNA	EFO	SRS489847	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-04A-01D A42203 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42203	SRX597718	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEERJ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAEERJ-04A-01D A42203 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42203_1_lane_dupsFlagged.bam	SRR1394958	@dbgap@:reads/SRP012000/SRS489847/SRX597718/SRR1394958/SRR1394958.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEERJ-04A-01D_TARGET-20-PAEERJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01D	DNA	EFO	SRS489847	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-04A-01D A42203 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42203	SRX597718	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEERJ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAEERJ-04A-01D A42203 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42203_1_lane_dupsFlagged.bam	SRR1394958	@dbgap@:reads/SRP012000/SRS489847/SRX597718/SRR1394958/SRR1394958.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEERJ-04A-01D_TARGET-20-PAEERJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01D	DNA	EFO	SRS489846	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-09A-01D A41851 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41851	SRX593313	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEERJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAEERJ-09A-01D A41851 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41851_1_lane_dupsFlagged.bam	SRR1385796	@dbgap@:reads/SRP012000/SRS489846/SRX593313/SRR1385796/SRR1385796.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAEERJ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAEERJ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01D	DNA	EFO	SRS489846	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-09A-01D A41851 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41851	SRX593313	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEERJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAEERJ-09A-01D A41851 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41851_1_lane_dupsFlagged.bam	SRR1385796	@dbgap@:reads/SRP012000/SRS489846/SRX593313/SRR1385796/SRR1385796.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEERJ-09A-01D_TARGET-20-PAEERJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01D	DNA	EFO	SRS489846	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-09A-01D A41851 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41851	SRX593313	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEERJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAEERJ-09A-01D A41851 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41851_1_lane_dupsFlagged.bam	SRR1385796	@dbgap@:reads/SRP012000/SRS489846/SRX593313/SRR1385796/SRR1385796.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEERJ-09A-01D_TARGET-20-PAEERJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-01D	DNA	EFO	SRS637476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-14A-01D A42872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42872	SRX597901	"Specific Capture analysis of normal sample TARGET-20-PAEERJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEERJ-14A-01D A42872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42872_1_lane_dupsFlagged.bam	SRR1395176	@dbgap@:reads/SRP012000/SRS637476/SRX597901/SRR1395176/SRR1395176.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAEERJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAEERJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-01D	DNA	EFO	SRS637476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-14A-01D A42872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42872	SRX597901	"Specific Capture analysis of normal sample TARGET-20-PAEERJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEERJ-14A-01D A42872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42872_1_lane_dupsFlagged.bam	SRR1395176	@dbgap@:reads/SRP012000/SRS637476/SRX597901/SRR1395176/SRR1395176.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEERJ-04A-01D_TARGET-20-PAEERJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-01D	DNA	EFO	SRS637476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-14A-01D A42872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42872	SRX597901	"Specific Capture analysis of normal sample TARGET-20-PAEERJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEERJ-14A-01D A42872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42872_1_lane_dupsFlagged.bam	SRR1395176	@dbgap@:reads/SRP012000/SRS637476/SRX597901/SRR1395176/SRR1395176.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEERJ-04A-01D_TARGET-20-PAEERJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-01D	DNA	EFO	SRS637476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-14A-01D A42872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42872	SRX597901	"Specific Capture analysis of normal sample TARGET-20-PAEERJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEERJ-14A-01D A42872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42872_1_lane_dupsFlagged.bam	SRR1395176	@dbgap@:reads/SRP012000/SRS637476/SRX597901/SRR1395176/SRR1395176.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEERJ-09A-01D_TARGET-20-PAEERJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-14A-01D	DNA	EFO	SRS637476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-14A-01D A42872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42872	SRX597901	"Specific Capture analysis of normal sample TARGET-20-PAEERJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEERJ-14A-01D A42872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42872_1_lane_dupsFlagged.bam	SRR1395176	@dbgap@:reads/SRP012000/SRS637476/SRX597901/SRR1395176/SRR1395176.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEERJ-09A-01D_TARGET-20-PAEERJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-04A-02D	DNA	EFO	SRS637512	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGR-04A-02D A42730 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42730	SRX597948	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEFGR-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PAEFGR-04A-02D A42730 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42730_1_lane_dupsFlagged.bam	SRR1395259	@dbgap@:reads/SRP012000/SRS637512/SRX597948/SRR1395259/SRR1395259.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAEFGR-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAEFGR-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-04A-02D	DNA	EFO	SRS637512	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGR-04A-02D A42730 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42730	SRX597948	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEFGR-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PAEFGR-04A-02D A42730 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42730_1_lane_dupsFlagged.bam	SRR1395259	@dbgap@:reads/SRP012000/SRS637512/SRX597948/SRR1395259/SRR1395259.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEFGR-04A-02D_TARGET-20-PAEFGR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-04A-02D	DNA	EFO	SRS637512	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGR-04A-02D A42730 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42730	SRX597948	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEFGR-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PAEFGR-04A-02D A42730 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42730_1_lane_dupsFlagged.bam	SRR1395259	@dbgap@:reads/SRP012000/SRS637512/SRX597948/SRR1395259/SRR1395259.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEFGR-04A-02D_TARGET-20-PAEFGR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-01D	DNA	EFO	SRS489685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGR-09A-01D A41852 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41852	SRX593339	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEFGR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAEFGR-09A-01D A41852 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41852_1_lane_dupsFlagged.bam	SRR1385790	@dbgap@:reads/SRP012000/SRS489685/SRX593339/SRR1385790/SRR1385790.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAEFGR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAEFGR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-01D	DNA	EFO	SRS489685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGR-09A-01D A41852 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41852	SRX593339	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEFGR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAEFGR-09A-01D A41852 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41852_1_lane_dupsFlagged.bam	SRR1385790	@dbgap@:reads/SRP012000/SRS489685/SRX593339/SRR1385790/SRR1385790.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEFGR-09A-01D_TARGET-20-PAEFGR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-01D	DNA	EFO	SRS489685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGR-09A-01D A41852 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41852	SRX593339	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEFGR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAEFGR-09A-01D A41852 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41852_1_lane_dupsFlagged.bam	SRR1385790	@dbgap@:reads/SRP012000/SRS489685/SRX593339/SRR1385790/SRR1385790.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEFGR-09A-01D_TARGET-20-PAEFGR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGR-14A-01D A42868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42868	SRX597905	"Specific Capture analysis of normal sample TARGET-20-PAEFGR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEFGR-14A-01D A42868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42868_1_lane_dupsFlagged.bam	SRR1395201	@dbgap@:reads/SRP012000/SRS489683/SRX597905/SRR1395201/SRR1395201.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAEFGR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAEFGR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGR-14A-01D A42868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42868	SRX597905	"Specific Capture analysis of normal sample TARGET-20-PAEFGR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEFGR-14A-01D A42868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42868_1_lane_dupsFlagged.bam	SRR1395201	@dbgap@:reads/SRP012000/SRS489683/SRX597905/SRR1395201/SRR1395201.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEFGR-04A-02D_TARGET-20-PAEFGR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGR-14A-01D A42868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42868	SRX597905	"Specific Capture analysis of normal sample TARGET-20-PAEFGR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEFGR-14A-01D A42868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42868_1_lane_dupsFlagged.bam	SRR1395201	@dbgap@:reads/SRP012000/SRS489683/SRX597905/SRR1395201/SRR1395201.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEFGR-04A-02D_TARGET-20-PAEFGR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGR-14A-01D A42868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42868	SRX597905	"Specific Capture analysis of normal sample TARGET-20-PAEFGR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEFGR-14A-01D A42868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42868_1_lane_dupsFlagged.bam	SRR1395201	@dbgap@:reads/SRP012000/SRS489683/SRX597905/SRR1395201/SRR1395201.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEFGR-09A-01D_TARGET-20-PAEFGR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-14A-01D	DNA	EFO	SRS489683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGR-14A-01D A42868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42868	SRX597905	"Specific Capture analysis of normal sample TARGET-20-PAEFGR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEFGR-14A-01D A42868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42868_1_lane_dupsFlagged.bam	SRR1395201	@dbgap@:reads/SRP012000/SRS489683/SRX597905/SRR1395201/SRR1395201.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEFGR-09A-01D_TARGET-20-PAEFGR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01D	DNA	EFO	SRS489654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-04A-01D A42204 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42204	SRX597736	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEFGT-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAEFGT-04A-01D A42204 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42204_1_lane_dupsFlagged.bam	SRR1395030	@dbgap@:reads/SRP012000/SRS489654/SRX597736/SRR1395030/SRR1395030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAEFGT-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAEFGT-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01D	DNA	EFO	SRS489654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-04A-01D A42204 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42204	SRX597736	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEFGT-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAEFGT-04A-01D A42204 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42204_1_lane_dupsFlagged.bam	SRR1395030	@dbgap@:reads/SRP012000/SRS489654/SRX597736/SRR1395030/SRR1395030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEFGT-04A-01D_TARGET-20-PAEFGT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01D	DNA	EFO	SRS489654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-04A-01D A42204 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42204	SRX597736	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEFGT-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAEFGT-04A-01D A42204 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42204_1_lane_dupsFlagged.bam	SRR1395030	@dbgap@:reads/SRP012000/SRS489654/SRX597736/SRR1395030/SRR1395030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEFGT-04A-01D_TARGET-20-PAEFGT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-09A-01D	DNA	EFO	SRS489655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-09A-01D A41859 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41859	SRX593379	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEFGT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAEFGT-09A-01D A41859 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41859_1_lane_dupsFlagged.bam	SRR1385786	@dbgap@:reads/SRP012000/SRS489655/SRX593379/SRR1385786/SRR1385786.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAEFGT-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAEFGT-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-09A-01D	DNA	EFO	SRS489655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-09A-01D A41859 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41859	SRX593379	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEFGT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAEFGT-09A-01D A41859 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41859_1_lane_dupsFlagged.bam	SRR1385786	@dbgap@:reads/SRP012000/SRS489655/SRX593379/SRR1385786/SRR1385786.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEFGT-09A-01D_TARGET-20-PAEFGT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-09A-01D	DNA	EFO	SRS489655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-09A-01D A41859 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41859	SRX593379	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEFGT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAEFGT-09A-01D A41859 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41859_1_lane_dupsFlagged.bam	SRR1385786	@dbgap@:reads/SRP012000/SRS489655/SRX593379/SRR1385786/SRR1385786.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEFGT-09A-01D_TARGET-20-PAEFGT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-14A-01D A42914 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42914	SRX597939	"Specific Capture analysis of normal sample TARGET-20-PAEFGT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEFGT-14A-01D A42914 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42914_1_lane_dupsFlagged.bam	SRR1395213	@dbgap@:reads/SRP012000/SRS489653/SRX597939/SRR1395213/SRR1395213.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAEFGT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAEFGT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-14A-01D A42914 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42914	SRX597939	"Specific Capture analysis of normal sample TARGET-20-PAEFGT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEFGT-14A-01D A42914 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42914_1_lane_dupsFlagged.bam	SRR1395213	@dbgap@:reads/SRP012000/SRS489653/SRX597939/SRR1395213/SRR1395213.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEFGT-04A-01D_TARGET-20-PAEFGT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-14A-01D A42914 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42914	SRX597939	"Specific Capture analysis of normal sample TARGET-20-PAEFGT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEFGT-14A-01D A42914 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42914_1_lane_dupsFlagged.bam	SRR1395213	@dbgap@:reads/SRP012000/SRS489653/SRX597939/SRR1395213/SRR1395213.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEFGT-04A-01D_TARGET-20-PAEFGT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-14A-01D A42914 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42914	SRX597939	"Specific Capture analysis of normal sample TARGET-20-PAEFGT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEFGT-14A-01D A42914 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42914_1_lane_dupsFlagged.bam	SRR1395213	@dbgap@:reads/SRP012000/SRS489653/SRX597939/SRR1395213/SRR1395213.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEFGT-09A-01D_TARGET-20-PAEFGT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-14A-01D	DNA	EFO	SRS489653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-14A-01D A42914 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42914	SRX597939	"Specific Capture analysis of normal sample TARGET-20-PAEFGT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEFGT-14A-01D A42914 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42914_1_lane_dupsFlagged.bam	SRR1395213	@dbgap@:reads/SRP012000/SRS489653/SRX597939/SRR1395213/SRR1395213.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEFGT-09A-01D_TARGET-20-PAEFGT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-02D	DNA	EFO	SRS637552	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-04A-02D A42703 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42703	SRX597992	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEIKD-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PAEIKD-04A-02D A42703 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42703_1_lane_dupsFlagged.bam	SRR1395238	@dbgap@:reads/SRP012000/SRS637552/SRX597992/SRR1395238/SRR1395238.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAEIKD-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAEIKD-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-02D	DNA	EFO	SRS637552	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-04A-02D A42703 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42703	SRX597992	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEIKD-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PAEIKD-04A-02D A42703 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42703_1_lane_dupsFlagged.bam	SRR1395238	@dbgap@:reads/SRP012000/SRS637552/SRX597992/SRR1395238/SRR1395238.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEIKD-04A-02D_TARGET-20-PAEIKD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-02D	DNA	EFO	SRS637552	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-04A-02D A42703 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42703	SRX597992	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEIKD-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PAEIKD-04A-02D A42703 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42703_1_lane_dupsFlagged.bam	SRR1395238	@dbgap@:reads/SRP012000/SRS637552/SRX597992/SRR1395238/SRR1395238.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEIKD-04A-02D_TARGET-20-PAEIKD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01D	DNA	EFO	SRS489668	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-09A-01D A41860 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41860	SRX593353	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEIKD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAEIKD-09A-01D A41860 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41860_1_lane_dupsFlagged.bam	SRR1385776	@dbgap@:reads/SRP012000/SRS489668/SRX593353/SRR1385776/SRR1385776.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAEIKD-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAEIKD-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01D	DNA	EFO	SRS489668	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-09A-01D A41860 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41860	SRX593353	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEIKD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAEIKD-09A-01D A41860 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41860_1_lane_dupsFlagged.bam	SRR1385776	@dbgap@:reads/SRP012000/SRS489668/SRX593353/SRR1385776/SRR1385776.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEIKD-09A-01D_TARGET-20-PAEIKD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01D	DNA	EFO	SRS489668	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-09A-01D A41860 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41860	SRX593353	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAEIKD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAEIKD-09A-01D A41860 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41860_1_lane_dupsFlagged.bam	SRR1385776	@dbgap@:reads/SRP012000/SRS489668/SRX593353/SRR1385776/SRR1385776.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEIKD-09A-01D_TARGET-20-PAEIKD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-14A-01D A42875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42875	SRX597887	"Specific Capture analysis of normal sample TARGET-20-PAEIKD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEIKD-14A-01D A42875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42875_1_lane_dupsFlagged.bam	SRR1395226	@dbgap@:reads/SRP012000/SRS489667/SRX597887/SRR1395226/SRR1395226.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAEIKD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAEIKD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-14A-01D A42875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42875	SRX597887	"Specific Capture analysis of normal sample TARGET-20-PAEIKD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEIKD-14A-01D A42875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42875_1_lane_dupsFlagged.bam	SRR1395226	@dbgap@:reads/SRP012000/SRS489667/SRX597887/SRR1395226/SRR1395226.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEIKD-04A-02D_TARGET-20-PAEIKD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-14A-01D A42875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42875	SRX597887	"Specific Capture analysis of normal sample TARGET-20-PAEIKD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEIKD-14A-01D A42875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42875_1_lane_dupsFlagged.bam	SRR1395226	@dbgap@:reads/SRP012000/SRS489667/SRX597887/SRR1395226/SRR1395226.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEIKD-04A-02D_TARGET-20-PAEIKD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-14A-01D A42875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42875	SRX597887	"Specific Capture analysis of normal sample TARGET-20-PAEIKD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEIKD-14A-01D A42875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42875_1_lane_dupsFlagged.bam	SRR1395226	@dbgap@:reads/SRP012000/SRS489667/SRX597887/SRR1395226/SRR1395226.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEIKD-09A-01D_TARGET-20-PAEIKD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-14A-01D	DNA	EFO	SRS489667	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-14A-01D A42875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42875	SRX597887	"Specific Capture analysis of normal sample TARGET-20-PAEIKD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAEIKD-14A-01D A42875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42875_1_lane_dupsFlagged.bam	SRR1395226	@dbgap@:reads/SRP012000/SRS489667/SRX597887/SRR1395226/SRR1395226.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAEIKD-09A-01D_TARGET-20-PAEIKD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-02D	DNA	EFO	SRS637560	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKERZ-04A-02D A42745 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42745	SRX598000	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKERZ-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PAKERZ-04A-02D A42745 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42745_1_lane_dupsFlagged.bam	SRR1395288	@dbgap@:reads/SRP012000/SRS637560/SRX598000/SRR1395288/SRR1395288.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAKERZ-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAKERZ-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01D	DNA	EFO	SRS489676	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKERZ-09A-01D A41856 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41856	SRX593344	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKERZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAKERZ-09A-01D A41856 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41856_1_lane_dupsFlagged.bam	SRR1385773	@dbgap@:reads/SRP012000/SRS489676/SRX593344/SRR1385773/SRR1385773.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAKERZ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAKERZ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-02D	DNA	EFO	SRS637532	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIWK-04A-02D A42704 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42704	SRX597970	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKIWK-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PAKIWK-04A-02D A42704 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42704_1_lane_dupsFlagged.bam	SRR1395258	@dbgap@:reads/SRP012000/SRS637532/SRX597970/SRR1395258/SRR1395258.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAKIWK-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAKIWK-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01D	DNA	EFO	SRS489849	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIWK-09A-01D A41857 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41857	SRX593360	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKIWK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAKIWK-09A-01D A41857 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41857_1_lane_dupsFlagged.bam	SRR1385834	@dbgap@:reads/SRP012000/SRS489849/SRX593360/SRR1385834/SRR1385834.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAKIWK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAKIWK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-03D	DNA	EFO	SRS489714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKLPD-09A-03D A41887 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41887	SRX593371	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKLPD-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAKLPD-09A-03D A41887 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41887_1_lane_dupsFlagged.bam	SRR1385821	@dbgap@:reads/SRP012000/SRS489714/SRX593371/SRR1385821/SRR1385821.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAKLPD-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAKLPD-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-03D	DNA	EFO	SRS489714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKLPD-09A-03D A41887 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41887	SRX593371	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKLPD-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAKLPD-09A-03D A41887 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41887_1_lane_dupsFlagged.bam	SRR1385821	@dbgap@:reads/SRP012000/SRS489714/SRX593371/SRR1385821/SRR1385821.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKLPD-09A-03D_TARGET-20-PAKLPD-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-03D	DNA	EFO	SRS489714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKLPD-09A-03D A41887 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41887	SRX593371	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKLPD-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAKLPD-09A-03D A41887 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41887_1_lane_dupsFlagged.bam	SRR1385821	@dbgap@:reads/SRP012000/SRS489714/SRX593371/SRR1385821/SRR1385821.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKLPD-09A-03D_TARGET-20-PAKLPD-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-14A-02D	DNA	EFO	SRS489713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKLPD-14A-02D A42643 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42643	SRX593980	"Specific Capture analysis of normal sample TARGET-20-PAKLPD-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PAKLPD-14A-02D A42643 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42643_1_lane_dupsFlagged.bam	SRR1386500	@dbgap@:reads/SRP012000/SRS489713/SRX593980/SRR1386500/SRR1386500.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAKLPD-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAKLPD-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-14A-02D	DNA	EFO	SRS489713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKLPD-14A-02D A42643 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42643	SRX593980	"Specific Capture analysis of normal sample TARGET-20-PAKLPD-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PAKLPD-14A-02D A42643 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42643_1_lane_dupsFlagged.bam	SRR1386500	@dbgap@:reads/SRP012000/SRS489713/SRX593980/SRR1386500/SRR1386500.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKLPD-09A-03D_TARGET-20-PAKLPD-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-14A-02D	DNA	EFO	SRS489713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKLPD-14A-02D A42643 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42643	SRX593980	"Specific Capture analysis of normal sample TARGET-20-PAKLPD-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PAKLPD-14A-02D A42643 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42643_1_lane_dupsFlagged.bam	SRR1386500	@dbgap@:reads/SRP012000/SRS489713/SRX593980/SRR1386500/SRR1386500.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKLPD-09A-03D_TARGET-20-PAKLPD-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-04A-02D	DNA	EFO	SRS637549	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKRZG-04A-02D A42742 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42742	SRX597987	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKRZG-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAKRZG-04A-02D A42742 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42742_1_lane_dupsFlagged.bam	SRR1395232	@dbgap@:reads/SRP012000/SRS637549/SRX597987/SRR1395232/SRR1395232.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAKRZG-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAKRZG-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-04A-02D	DNA	EFO	SRS637549	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKRZG-04A-02D A42742 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42742	SRX597987	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKRZG-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAKRZG-04A-02D A42742 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42742_1_lane_dupsFlagged.bam	SRR1395232	@dbgap@:reads/SRP012000/SRS637549/SRX597987/SRR1395232/SRR1395232.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKRZG-04A-02D_TARGET-20-PAKRZG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-04A-02D	DNA	EFO	SRS637549	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKRZG-04A-02D A42742 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42742	SRX597987	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKRZG-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAKRZG-04A-02D A42742 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42742_1_lane_dupsFlagged.bam	SRR1395232	@dbgap@:reads/SRP012000/SRS637549/SRX597987/SRR1395232/SRR1395232.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKRZG-04A-02D_TARGET-20-PAKRZG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-09A-01D	DNA	EFO	SRS118041	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKRZG-09A-01D A41862 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41862	SRX593373	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKRZG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAKRZG-09A-01D A41862 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41862_1_lane_dupsFlagged.bam	SRR1385813	@dbgap@:reads/SRP012000/SRS118041/SRX593373/SRR1385813/SRR1385813.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAKRZG-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAKRZG-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-09A-01D	DNA	EFO	SRS118041	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKRZG-09A-01D A41862 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41862	SRX593373	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKRZG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAKRZG-09A-01D A41862 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41862_1_lane_dupsFlagged.bam	SRR1385813	@dbgap@:reads/SRP012000/SRS118041/SRX593373/SRR1385813/SRR1385813.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKRZG-09A-01D_TARGET-20-PAKRZG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-09A-01D	DNA	EFO	SRS118041	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKRZG-09A-01D A41862 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41862	SRX593373	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKRZG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAKRZG-09A-01D A41862 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41862_1_lane_dupsFlagged.bam	SRR1385813	@dbgap@:reads/SRP012000/SRS118041/SRX593373/SRR1385813/SRR1385813.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKRZG-09A-01D_TARGET-20-PAKRZG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKRZG-14A-01D A42639 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42639	SRX593941	"Specific Capture analysis of normal sample TARGET-20-PAKRZG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAKRZG-14A-01D A42639 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42639_1_lane_dupsFlagged.bam	SRR1386470	@dbgap@:reads/SRP012000/SRS118042/SRX593941/SRR1386470/SRR1386470.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAKRZG-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAKRZG-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKRZG-14A-01D A42639 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42639	SRX593941	"Specific Capture analysis of normal sample TARGET-20-PAKRZG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAKRZG-14A-01D A42639 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42639_1_lane_dupsFlagged.bam	SRR1386470	@dbgap@:reads/SRP012000/SRS118042/SRX593941/SRR1386470/SRR1386470.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKRZG-04A-02D_TARGET-20-PAKRZG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKRZG-14A-01D A42639 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42639	SRX593941	"Specific Capture analysis of normal sample TARGET-20-PAKRZG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAKRZG-14A-01D A42639 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42639_1_lane_dupsFlagged.bam	SRR1386470	@dbgap@:reads/SRP012000/SRS118042/SRX593941/SRR1386470/SRR1386470.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKRZG-04A-02D_TARGET-20-PAKRZG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKRZG-14A-01D A42639 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42639	SRX593941	"Specific Capture analysis of normal sample TARGET-20-PAKRZG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAKRZG-14A-01D A42639 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42639_1_lane_dupsFlagged.bam	SRR1386470	@dbgap@:reads/SRP012000/SRS118042/SRX593941/SRR1386470/SRR1386470.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKRZG-09A-01D_TARGET-20-PAKRZG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAKRZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRZG-14A-01D	DNA	EFO	SRS118042	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKRZG-14A-01D A42639 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42639	SRX593941	"Specific Capture analysis of normal sample TARGET-20-PAKRZG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAKRZG-14A-01D A42639 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42639_1_lane_dupsFlagged.bam	SRR1386470	@dbgap@:reads/SRP012000/SRS118042/SRX593941/SRR1386470/SRR1386470.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKRZG-09A-01D_TARGET-20-PAKRZG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-02D	DNA	EFO	SRS635586	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKSMZ-03A-02D A41900 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41900	SRX593406	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKSMZ-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAKSMZ-03A-02D A41900 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41900_1_lane_dupsFlagged.bam	SRR1385894	@dbgap@:reads/SRP012000/SRS635586/SRX593406/SRR1385894/SRR1385894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAKSMZ-03A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAKSMZ-03A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-02D	DNA	EFO	SRS635586	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKSMZ-03A-02D A41900 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41900	SRX593406	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKSMZ-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAKSMZ-03A-02D A41900 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41900_1_lane_dupsFlagged.bam	SRR1385894	@dbgap@:reads/SRP012000/SRS635586/SRX593406/SRR1385894/SRR1385894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKSMZ-03A-02D_TARGET-20-PAKSMZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-02D	DNA	EFO	SRS635586	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKSMZ-03A-02D A41900 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41900	SRX593406	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKSMZ-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAKSMZ-03A-02D A41900 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41900_1_lane_dupsFlagged.bam	SRR1385894	@dbgap@:reads/SRP012000/SRS635586/SRX593406/SRR1385894/SRR1385894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKSMZ-03A-02D_TARGET-20-PAKSMZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-10A-01D	DNA	EFO	SRS489746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKSMZ-10A-01D A42767 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42767	SRX597955	"Specific Capture analysis of normal sample TARGET-20-PAKSMZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PAKSMZ-10A-01D A42767 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42767_1_lane_dupsFlagged.bam	SRR1395282	@dbgap@:reads/SRP012000/SRS489746/SRX597955/SRR1395282/SRR1395282.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAKSMZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAKSMZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-10A-01D	DNA	EFO	SRS489746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKSMZ-10A-01D A42767 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42767	SRX597955	"Specific Capture analysis of normal sample TARGET-20-PAKSMZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PAKSMZ-10A-01D A42767 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42767_1_lane_dupsFlagged.bam	SRR1395282	@dbgap@:reads/SRP012000/SRS489746/SRX597955/SRR1395282/SRR1395282.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKSMZ-03A-02D_TARGET-20-PAKSMZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-10A-01D	DNA	EFO	SRS489746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKSMZ-10A-01D A42767 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42767	SRX597955	"Specific Capture analysis of normal sample TARGET-20-PAKSMZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PAKSMZ-10A-01D A42767 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42767_1_lane_dupsFlagged.bam	SRR1395282	@dbgap@:reads/SRP012000/SRS489746/SRX597955/SRR1395282/SRR1395282.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKSMZ-03A-02D_TARGET-20-PAKSMZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01D	DNA	EFO	SRS489875	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-04A-01D A42205 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42205	SRX597724	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKTCX-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAKTCX-04A-01D A42205 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42205_1_lane_dupsFlagged.bam	SRR1395020	@dbgap@:reads/SRP012000/SRS489875/SRX597724/SRR1395020/SRR1395020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAKTCX-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAKTCX-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01D	DNA	EFO	SRS489875	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-04A-01D A42205 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42205	SRX597724	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKTCX-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAKTCX-04A-01D A42205 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42205_1_lane_dupsFlagged.bam	SRR1395020	@dbgap@:reads/SRP012000/SRS489875/SRX597724/SRR1395020/SRR1395020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKTCX-04A-01D_TARGET-20-PAKTCX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01D	DNA	EFO	SRS489875	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-04A-01D A42205 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42205	SRX597724	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKTCX-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAKTCX-04A-01D A42205 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42205_1_lane_dupsFlagged.bam	SRR1395020	@dbgap@:reads/SRP012000/SRS489875/SRX597724/SRR1395020/SRR1395020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKTCX-04A-01D_TARGET-20-PAKTCX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-01D	DNA	EFO	SRS489876	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-09A-01D A41855 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41855	SRX593321	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKTCX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAKTCX-09A-01D A41855 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41855_1_lane_dupsFlagged.bam	SRR1385858	@dbgap@:reads/SRP012000/SRS489876/SRX593321/SRR1385858/SRR1385858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAKTCX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAKTCX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-01D	DNA	EFO	SRS489876	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-09A-01D A41855 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41855	SRX593321	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKTCX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAKTCX-09A-01D A41855 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41855_1_lane_dupsFlagged.bam	SRR1385858	@dbgap@:reads/SRP012000/SRS489876/SRX593321/SRR1385858/SRR1385858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKTCX-09A-01D_TARGET-20-PAKTCX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-01D	DNA	EFO	SRS489876	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-09A-01D A41855 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41855	SRX593321	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKTCX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAKTCX-09A-01D A41855 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41855_1_lane_dupsFlagged.bam	SRR1385858	@dbgap@:reads/SRP012000/SRS489876/SRX593321/SRR1385858/SRR1385858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKTCX-09A-01D_TARGET-20-PAKTCX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-14A-01D A42927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42927	SRX597941	"Specific Capture analysis of normal sample TARGET-20-PAKTCX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAKTCX-14A-01D A42927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42927_1_lane_dupsFlagged.bam	SRR1395190	@dbgap@:reads/SRP012000/SRS489874/SRX597941/SRR1395190/SRR1395190.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAKTCX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAKTCX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-14A-01D A42927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42927	SRX597941	"Specific Capture analysis of normal sample TARGET-20-PAKTCX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAKTCX-14A-01D A42927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42927_1_lane_dupsFlagged.bam	SRR1395190	@dbgap@:reads/SRP012000/SRS489874/SRX597941/SRR1395190/SRR1395190.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKTCX-04A-01D_TARGET-20-PAKTCX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-14A-01D A42927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42927	SRX597941	"Specific Capture analysis of normal sample TARGET-20-PAKTCX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAKTCX-14A-01D A42927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42927_1_lane_dupsFlagged.bam	SRR1395190	@dbgap@:reads/SRP012000/SRS489874/SRX597941/SRR1395190/SRR1395190.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKTCX-04A-01D_TARGET-20-PAKTCX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-14A-01D A42927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42927	SRX597941	"Specific Capture analysis of normal sample TARGET-20-PAKTCX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAKTCX-14A-01D A42927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42927_1_lane_dupsFlagged.bam	SRR1395190	@dbgap@:reads/SRP012000/SRS489874/SRX597941/SRR1395190/SRR1395190.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKTCX-09A-01D_TARGET-20-PAKTCX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-14A-01D	DNA	EFO	SRS489874	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-14A-01D A42927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42927	SRX597941	"Specific Capture analysis of normal sample TARGET-20-PAKTCX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAKTCX-14A-01D A42927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42927_1_lane_dupsFlagged.bam	SRR1395190	@dbgap@:reads/SRP012000/SRS489874/SRX597941/SRR1395190/SRR1395190.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAKTCX-09A-01D_TARGET-20-PAKTCX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-04A-02D	DNA	EFO	SRS637561	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKVGI-04A-02D A42743 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42743	SRX598001	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKVGI-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PAKVGI-04A-02D A42743 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42743_1_lane_dupsFlagged.bam	SRR1395276	@dbgap@:reads/SRP012000/SRS637561/SRX598001/SRR1395276/SRR1395276.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAKVGI-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAKVGI-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01D	DNA	EFO	SRS489682	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKVGI-09A-01D A41854 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41854	SRX593362	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAKVGI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAKVGI-09A-01D A41854 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41854_1_lane_dupsFlagged.bam	SRR1385772	@dbgap@:reads/SRP012000/SRS489682/SRX593362/SRR1385772/SRR1385772.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAKVGI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAKVGI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-01D	DNA	EFO	SRS489809	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALGKX-09A-01D A41449 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41449	SRX588510	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PALGKX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PALGKX-09A-01D A41449 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41449_1_lane_dupsFlagged.bam	SRR1374876	@dbgap@:reads/SRP012000/SRS489809/SRX588510/SRR1374876/SRR1374876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PALGKX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PALGKX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-01D	DNA	EFO	SRS489809	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALGKX-09A-01D A41449 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41449	SRX588510	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PALGKX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PALGKX-09A-01D A41449 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41449_1_lane_dupsFlagged.bam	SRR1374876	@dbgap@:reads/SRP012000/SRS489809/SRX588510/SRR1374876/SRR1374876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PALGKX-09A-01D_TARGET-20-PALGKX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-01D	DNA	EFO	SRS489809	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALGKX-09A-01D A41449 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41449	SRX588510	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PALGKX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PALGKX-09A-01D A41449 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41449_1_lane_dupsFlagged.bam	SRR1374876	@dbgap@:reads/SRP012000/SRS489809/SRX588510/SRR1374876/SRR1374876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PALGKX-09A-01D_TARGET-20-PALGKX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALGKX-14A-01D A42950 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42950	SRX597921	"Specific Capture analysis of normal sample TARGET-20-PALGKX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PALGKX-14A-01D A42950 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42950_1_lane_dupsFlagged.bam	SRR1395214	@dbgap@:reads/SRP012000/SRS489807/SRX597921/SRR1395214/SRR1395214.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PALGKX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PALGKX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALGKX-14A-01D A42950 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42950	SRX597921	"Specific Capture analysis of normal sample TARGET-20-PALGKX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PALGKX-14A-01D A42950 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42950_1_lane_dupsFlagged.bam	SRR1395214	@dbgap@:reads/SRP012000/SRS489807/SRX597921/SRR1395214/SRR1395214.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PALGKX-09A-01D_TARGET-20-PALGKX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-14A-01D	DNA	EFO	SRS489807	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALGKX-14A-01D A42950 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42950	SRX597921	"Specific Capture analysis of normal sample TARGET-20-PALGKX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PALGKX-14A-01D A42950 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42950_1_lane_dupsFlagged.bam	SRR1395214	@dbgap@:reads/SRP012000/SRS489807/SRX597921/SRR1395214/SRR1395214.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PALGKX-09A-01D_TARGET-20-PALGKX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-02D	DNA	EFO	SRS635575	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMVKZ-09A-02D A41890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41890	SRX593394	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAMVKZ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAMVKZ-09A-02D A41890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41890_1_lane_dupsFlagged.bam	SRR1385911	@dbgap@:reads/SRP012000/SRS635575/SRX593394/SRR1385911/SRR1385911.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAMVKZ-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAMVKZ-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-02D	DNA	EFO	SRS635575	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMVKZ-09A-02D A41890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41890	SRX593394	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAMVKZ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAMVKZ-09A-02D A41890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41890_1_lane_dupsFlagged.bam	SRR1385911	@dbgap@:reads/SRP012000/SRS635575/SRX593394/SRR1385911/SRR1385911.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMVKZ-09A-02D_TARGET-20-PAMVKZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-02D	DNA	EFO	SRS635575	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMVKZ-09A-02D A41890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41890	SRX593394	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAMVKZ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAMVKZ-09A-02D A41890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41890_1_lane_dupsFlagged.bam	SRR1385911	@dbgap@:reads/SRP012000/SRS635575/SRX593394/SRR1385911/SRR1385911.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMVKZ-09A-02D_TARGET-20-PAMVKZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMVKZ-14A-01D A42558 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42558	SRX593964	"Specific Capture analysis of normal sample TARGET-20-PAMVKZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PAMVKZ-14A-01D A42558 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42558_1_lane_dupsFlagged.bam	SRR1386490	@dbgap@:reads/SRP012000/SRS301010/SRX593964/SRR1386490/SRR1386490.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAMVKZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAMVKZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMVKZ-14A-01D A42558 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42558	SRX593964	"Specific Capture analysis of normal sample TARGET-20-PAMVKZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PAMVKZ-14A-01D A42558 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42558_1_lane_dupsFlagged.bam	SRR1386490	@dbgap@:reads/SRP012000/SRS301010/SRX593964/SRR1386490/SRR1386490.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMVKZ-09A-02D_TARGET-20-PAMVKZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-14A-01D	DNA	EFO	SRS301010	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMVKZ-14A-01D A42558 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42558	SRX593964	"Specific Capture analysis of normal sample TARGET-20-PAMVKZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PAMVKZ-14A-01D A42558 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42558_1_lane_dupsFlagged.bam	SRR1386490	@dbgap@:reads/SRP012000/SRS301010/SRX593964/SRR1386490/SRR1386490.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMVKZ-09A-02D_TARGET-20-PAMVKZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-02D	DNA	EFO	SRS637563	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-04A-02D A42705 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42705	SRX598003	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAMYAS-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PAMYAS-04A-02D A42705 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42705_1_lane_dupsFlagged.bam	SRR1395279	@dbgap@:reads/SRP012000/SRS637563/SRX598003/SRR1395279/SRR1395279.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAMYAS-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAMYAS-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-02D	DNA	EFO	SRS637563	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-04A-02D A42705 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42705	SRX598003	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAMYAS-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PAMYAS-04A-02D A42705 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42705_1_lane_dupsFlagged.bam	SRR1395279	@dbgap@:reads/SRP012000/SRS637563/SRX598003/SRR1395279/SRR1395279.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYAS-04A-02D_TARGET-20-PAMYAS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-02D	DNA	EFO	SRS637563	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-04A-02D A42705 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42705	SRX598003	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAMYAS-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PAMYAS-04A-02D A42705 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42705_1_lane_dupsFlagged.bam	SRR1395279	@dbgap@:reads/SRP012000/SRS637563/SRX598003/SRR1395279/SRR1395279.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYAS-04A-02D_TARGET-20-PAMYAS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-03D	DNA	EFO	SRS635616	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-09A-03D A41901 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41901	SRX593437	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAMYAS-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAMYAS-09A-03D A41901 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41901_1_lane_dupsFlagged.bam	SRR1385905	@dbgap@:reads/SRP012000/SRS635616/SRX593437/SRR1385905/SRR1385905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAMYAS-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAMYAS-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-03D	DNA	EFO	SRS635616	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-09A-03D A41901 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41901	SRX593437	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAMYAS-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAMYAS-09A-03D A41901 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41901_1_lane_dupsFlagged.bam	SRR1385905	@dbgap@:reads/SRP012000/SRS635616/SRX593437/SRR1385905/SRR1385905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYAS-09A-03D_TARGET-20-PAMYAS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-03D	DNA	EFO	SRS635616	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-09A-03D A41901 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41901	SRX593437	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAMYAS-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAMYAS-09A-03D A41901 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41901_1_lane_dupsFlagged.bam	SRR1385905	@dbgap@:reads/SRP012000/SRS635616/SRX593437/SRR1385905/SRR1385905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYAS-09A-03D_TARGET-20-PAMYAS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-01D	DNA	EFO	SRS160274	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-14A-01D A42951 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42951	SRX597906	"Specific Capture analysis of normal sample TARGET-20-PAMYAS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAMYAS-14A-01D A42951 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42951_1_lane_dupsFlagged.bam	SRR1395137	@dbgap@:reads/SRP012000/SRS160274/SRX597906/SRR1395137/SRR1395137.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAMYAS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAMYAS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-01D	DNA	EFO	SRS160274	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-14A-01D A42951 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42951	SRX597906	"Specific Capture analysis of normal sample TARGET-20-PAMYAS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAMYAS-14A-01D A42951 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42951_1_lane_dupsFlagged.bam	SRR1395137	@dbgap@:reads/SRP012000/SRS160274/SRX597906/SRR1395137/SRR1395137.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYAS-04A-02D_TARGET-20-PAMYAS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-01D	DNA	EFO	SRS160274	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-14A-01D A42951 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42951	SRX597906	"Specific Capture analysis of normal sample TARGET-20-PAMYAS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAMYAS-14A-01D A42951 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42951_1_lane_dupsFlagged.bam	SRR1395137	@dbgap@:reads/SRP012000/SRS160274/SRX597906/SRR1395137/SRR1395137.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYAS-04A-02D_TARGET-20-PAMYAS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-01D	DNA	EFO	SRS160274	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-14A-01D A42951 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42951	SRX597906	"Specific Capture analysis of normal sample TARGET-20-PAMYAS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAMYAS-14A-01D A42951 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42951_1_lane_dupsFlagged.bam	SRR1395137	@dbgap@:reads/SRP012000/SRS160274/SRX597906/SRR1395137/SRR1395137.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYAS-09A-03D_TARGET-20-PAMYAS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-01D	DNA	EFO	SRS160274	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-14A-01D A42951 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42951	SRX597906	"Specific Capture analysis of normal sample TARGET-20-PAMYAS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAMYAS-14A-01D A42951 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42951_1_lane_dupsFlagged.bam	SRR1395137	@dbgap@:reads/SRP012000/SRS160274/SRX597906/SRR1395137/SRR1395137.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYAS-09A-03D_TARGET-20-PAMYAS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-02D	DNA	EFO	SRS635626	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYGX-09A-02D A41906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41906	SRX593446	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAMYGX-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAMYGX-09A-02D A41906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41906_1_lane_dupsFlagged.bam	SRR1385896	@dbgap@:reads/SRP012000/SRS635626/SRX593446/SRR1385896/SRR1385896.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAMYGX-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAMYGX-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-02D	DNA	EFO	SRS635626	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYGX-09A-02D A41906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41906	SRX593446	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAMYGX-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAMYGX-09A-02D A41906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41906_1_lane_dupsFlagged.bam	SRR1385896	@dbgap@:reads/SRP012000/SRS635626/SRX593446/SRR1385896/SRR1385896.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYGX-09A-02D_TARGET-20-PAMYGX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-02D	DNA	EFO	SRS635626	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYGX-09A-02D A41906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41906	SRX593446	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAMYGX-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAMYGX-09A-02D A41906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41906_1_lane_dupsFlagged.bam	SRR1385896	@dbgap@:reads/SRP012000/SRS635626/SRX593446/SRR1385896/SRR1385896.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYGX-09A-02D_TARGET-20-PAMYGX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-14A-01D	DNA	EFO	SRS637451	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYGX-14A-01D A42952 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42952	SRX597868	"Specific Capture analysis of normal sample TARGET-20-PAMYGX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAMYGX-14A-01D A42952 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42952_1_lane_dupsFlagged.bam	SRR1395152	@dbgap@:reads/SRP012000/SRS637451/SRX597868/SRR1395152/SRR1395152.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAMYGX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAMYGX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-14A-01D	DNA	EFO	SRS637451	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYGX-14A-01D A42952 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42952	SRX597868	"Specific Capture analysis of normal sample TARGET-20-PAMYGX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAMYGX-14A-01D A42952 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42952_1_lane_dupsFlagged.bam	SRR1395152	@dbgap@:reads/SRP012000/SRS637451/SRX597868/SRR1395152/SRR1395152.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYGX-09A-02D_TARGET-20-PAMYGX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-14A-01D	DNA	EFO	SRS637451	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYGX-14A-01D A42952 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42952	SRX597868	"Specific Capture analysis of normal sample TARGET-20-PAMYGX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAMYGX-14A-01D A42952 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42952_1_lane_dupsFlagged.bam	SRR1395152	@dbgap@:reads/SRP012000/SRS637451/SRX597868/SRR1395152/SRR1395152.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYGX-09A-02D_TARGET-20-PAMYGX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-04A-01D	DNA	EFO	SRS270638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYJX-04A-01D A42267 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42267	SRX597695	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAMYJX-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAMYJX-04A-01D A42267 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42267_1_lane_dupsFlagged.bam	SRR1394966	@dbgap@:reads/SRP012000/SRS270638/SRX597695/SRR1394966/SRR1394966.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAMYJX-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAMYJX-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-04A-01D	DNA	EFO	SRS270638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYJX-04A-01D A42267 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42267	SRX597695	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAMYJX-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAMYJX-04A-01D A42267 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42267_1_lane_dupsFlagged.bam	SRR1394966	@dbgap@:reads/SRP012000/SRS270638/SRX597695/SRR1394966/SRR1394966.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYJX-04A-01D_TARGET-20-PAMYJX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-04A-01D	DNA	EFO	SRS270638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYJX-04A-01D A42267 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42267	SRX597695	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAMYJX-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAMYJX-04A-01D A42267 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42267_1_lane_dupsFlagged.bam	SRR1394966	@dbgap@:reads/SRP012000/SRS270638/SRX597695/SRR1394966/SRR1394966.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYJX-04A-01D_TARGET-20-PAMYJX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-03D	DNA	EFO	SRS635603	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYJX-09A-03D A41892 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41892	SRX593423	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAMYJX-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAMYJX-09A-03D A41892 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41892_1_lane_dupsFlagged.bam	SRR1385893	@dbgap@:reads/SRP012000/SRS635603/SRX593423/SRR1385893/SRR1385893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAMYJX-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAMYJX-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-03D	DNA	EFO	SRS635603	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYJX-09A-03D A41892 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41892	SRX593423	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAMYJX-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAMYJX-09A-03D A41892 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41892_1_lane_dupsFlagged.bam	SRR1385893	@dbgap@:reads/SRP012000/SRS635603/SRX593423/SRR1385893/SRR1385893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYJX-09A-03D_TARGET-20-PAMYJX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-03D	DNA	EFO	SRS635603	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYJX-09A-03D A41892 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41892	SRX593423	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAMYJX-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAMYJX-09A-03D A41892 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41892_1_lane_dupsFlagged.bam	SRR1385893	@dbgap@:reads/SRP012000/SRS635603/SRX593423/SRR1385893/SRR1385893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYJX-09A-03D_TARGET-20-PAMYJX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYJX-14A-01D A42928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42928	SRX597859	"Specific Capture analysis of normal sample TARGET-20-PAMYJX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAMYJX-14A-01D A42928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42928_1_lane_dupsFlagged.bam	SRR1395171	@dbgap@:reads/SRP012000/SRS270640/SRX597859/SRR1395171/SRR1395171.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAMYJX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAMYJX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYJX-14A-01D A42928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42928	SRX597859	"Specific Capture analysis of normal sample TARGET-20-PAMYJX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAMYJX-14A-01D A42928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42928_1_lane_dupsFlagged.bam	SRR1395171	@dbgap@:reads/SRP012000/SRS270640/SRX597859/SRR1395171/SRR1395171.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYJX-04A-01D_TARGET-20-PAMYJX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYJX-14A-01D A42928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42928	SRX597859	"Specific Capture analysis of normal sample TARGET-20-PAMYJX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAMYJX-14A-01D A42928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42928_1_lane_dupsFlagged.bam	SRR1395171	@dbgap@:reads/SRP012000/SRS270640/SRX597859/SRR1395171/SRR1395171.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYJX-04A-01D_TARGET-20-PAMYJX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYJX-14A-01D A42928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42928	SRX597859	"Specific Capture analysis of normal sample TARGET-20-PAMYJX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAMYJX-14A-01D A42928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42928_1_lane_dupsFlagged.bam	SRR1395171	@dbgap@:reads/SRP012000/SRS270640/SRX597859/SRR1395171/SRR1395171.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYJX-09A-03D_TARGET-20-PAMYJX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-14A-01D	DNA	EFO	SRS270640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYJX-14A-01D A42928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42928	SRX597859	"Specific Capture analysis of normal sample TARGET-20-PAMYJX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAMYJX-14A-01D A42928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42928_1_lane_dupsFlagged.bam	SRR1395171	@dbgap@:reads/SRP012000/SRS270640/SRX597859/SRR1395171/SRR1395171.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAMYJX-09A-03D_TARGET-20-PAMYJX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03D	DNA	EFO	SRS301013	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANAEV-09A-03D A41886 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41886	SRX593318	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANAEV-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANAEV-09A-03D A41886 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41886_1_lane_dupsFlagged.bam	SRR1385852	@dbgap@:reads/SRP012000/SRS301013/SRX593318/SRR1385852/SRR1385852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANAEV-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANAEV-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03D	DNA	EFO	SRS301013	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANAEV-09A-03D A41886 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41886	SRX593318	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANAEV-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANAEV-09A-03D A41886 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41886_1_lane_dupsFlagged.bam	SRR1385852	@dbgap@:reads/SRP012000/SRS301013/SRX593318/SRR1385852/SRR1385852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANAEV-09A-03D_TARGET-20-PANAEV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03D	DNA	EFO	SRS301013	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANAEV-09A-03D A41886 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41886	SRX593318	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANAEV-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANAEV-09A-03D A41886 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41886_1_lane_dupsFlagged.bam	SRR1385852	@dbgap@:reads/SRP012000/SRS301013/SRX593318/SRR1385852/SRR1385852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANAEV-09A-03D_TARGET-20-PANAEV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-14A-01D	DNA	EFO	SRS301014	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANAEV-14A-01D A41524 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41524	SRX590832	"Specific Capture analysis of normal sample TARGET-20-PANAEV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANAEV-14A-01D A41524 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41524_1_lane_dupsFlagged.bam	SRR1379872	@dbgap@:reads/SRP012000/SRS301014/SRX590832/SRR1379872/SRR1379872.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANAEV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANAEV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-14A-01D	DNA	EFO	SRS301014	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANAEV-14A-01D A41524 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41524	SRX590832	"Specific Capture analysis of normal sample TARGET-20-PANAEV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANAEV-14A-01D A41524 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41524_1_lane_dupsFlagged.bam	SRR1379872	@dbgap@:reads/SRP012000/SRS301014/SRX590832/SRR1379872/SRR1379872.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANAEV-09A-03D_TARGET-20-PANAEV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-14A-01D	DNA	EFO	SRS301014	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANAEV-14A-01D A41524 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41524	SRX590832	"Specific Capture analysis of normal sample TARGET-20-PANAEV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANAEV-14A-01D A41524 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41524_1_lane_dupsFlagged.bam	SRR1379872	@dbgap@:reads/SRP012000/SRS301014/SRX590832/SRR1379872/SRR1379872.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANAEV-09A-03D_TARGET-20-PANAEV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-02D	DNA	EFO	SRS635606	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBZH-09A-02D A41898 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41898	SRX593426	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANBZH-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANBZH-09A-02D A41898 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41898_1_lane_dupsFlagged.bam	SRR1385866	@dbgap@:reads/SRP012000/SRS635606/SRX593426/SRR1385866/SRR1385866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANBZH-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANBZH-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-02D	DNA	EFO	SRS635606	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBZH-09A-02D A41898 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41898	SRX593426	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANBZH-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANBZH-09A-02D A41898 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41898_1_lane_dupsFlagged.bam	SRR1385866	@dbgap@:reads/SRP012000/SRS635606/SRX593426/SRR1385866/SRR1385866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANBZH-09A-02D_TARGET-20-PANBZH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-02D	DNA	EFO	SRS635606	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBZH-09A-02D A41898 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41898	SRX593426	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANBZH-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANBZH-09A-02D A41898 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41898_1_lane_dupsFlagged.bam	SRR1385866	@dbgap@:reads/SRP012000/SRS635606/SRX593426/SRR1385866/SRR1385866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANBZH-09A-02D_TARGET-20-PANBZH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-01D	DNA	EFO	SRS636006	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBZH-14A-01D A42554 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42554	SRX593979	"Specific Capture analysis of normal sample TARGET-20-PANBZH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANBZH-14A-01D A42554 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42554_1_lane_dupsFlagged.bam	SRR1386498	@dbgap@:reads/SRP012000/SRS636006/SRX593979/SRR1386498/SRR1386498.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANBZH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANBZH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-01D	DNA	EFO	SRS636006	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBZH-14A-01D A42554 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42554	SRX593979	"Specific Capture analysis of normal sample TARGET-20-PANBZH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANBZH-14A-01D A42554 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42554_1_lane_dupsFlagged.bam	SRR1386498	@dbgap@:reads/SRP012000/SRS636006/SRX593979/SRR1386498/SRR1386498.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANBZH-09A-02D_TARGET-20-PANBZH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-14A-01D	DNA	EFO	SRS636006	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBZH-14A-01D A42554 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42554	SRX593979	"Specific Capture analysis of normal sample TARGET-20-PANBZH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANBZH-14A-01D A42554 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42554_1_lane_dupsFlagged.bam	SRR1386498	@dbgap@:reads/SRP012000/SRS636006/SRX593979/SRR1386498/SRR1386498.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANBZH-09A-02D_TARGET-20-PANBZH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-04A-02D	DNA	EFO	SRS637558	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANCSC-04A-02D A42706 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42706	SRX597998	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANCSC-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PANCSC-04A-02D A42706 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42706_1_lane_dupsFlagged.bam	SRR1395247	@dbgap@:reads/SRP012000/SRS637558/SRX597998/SRR1395247/SRR1395247.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANCSC-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANCSC-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-04A-02D	DNA	EFO	SRS637558	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANCSC-04A-02D A42706 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42706	SRX597998	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANCSC-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PANCSC-04A-02D A42706 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42706_1_lane_dupsFlagged.bam	SRR1395247	@dbgap@:reads/SRP012000/SRS637558/SRX597998/SRR1395247/SRR1395247.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANCSC-04A-02D_TARGET-20-PANCSC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-04A-02D	DNA	EFO	SRS637558	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANCSC-04A-02D A42706 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42706	SRX597998	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANCSC-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PANCSC-04A-02D A42706 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42706_1_lane_dupsFlagged.bam	SRR1395247	@dbgap@:reads/SRP012000/SRS637558/SRX597998/SRR1395247/SRR1395247.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANCSC-04A-02D_TARGET-20-PANCSC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-03D	DNA	EFO	SRS635545	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANCSC-09A-03D A41865 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41865	SRX593345	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANCSC-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANCSC-09A-03D A41865 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41865_1_lane_dupsFlagged.bam	SRR1385769	@dbgap@:reads/SRP012000/SRS635545/SRX593345/SRR1385769/SRR1385769.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANCSC-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANCSC-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-03D	DNA	EFO	SRS635545	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANCSC-09A-03D A41865 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41865	SRX593345	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANCSC-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANCSC-09A-03D A41865 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41865_1_lane_dupsFlagged.bam	SRR1385769	@dbgap@:reads/SRP012000/SRS635545/SRX593345/SRR1385769/SRR1385769.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANCSC-09A-03D_TARGET-20-PANCSC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-03D	DNA	EFO	SRS635545	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANCSC-09A-03D A41865 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41865	SRX593345	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANCSC-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANCSC-09A-03D A41865 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41865_1_lane_dupsFlagged.bam	SRR1385769	@dbgap@:reads/SRP012000/SRS635545/SRX593345/SRR1385769/SRR1385769.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANCSC-09A-03D_TARGET-20-PANCSC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANCSC-14A-01D A42559 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42559	SRX593996	"Specific Capture analysis of normal sample TARGET-20-PANCSC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANCSC-14A-01D A42559 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42559_1_lane_dupsFlagged.bam	SRR1386491	@dbgap@:reads/SRP012000/SRS118044/SRX593996/SRR1386491/SRR1386491.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANCSC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANCSC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANCSC-14A-01D A42559 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42559	SRX593996	"Specific Capture analysis of normal sample TARGET-20-PANCSC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANCSC-14A-01D A42559 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42559_1_lane_dupsFlagged.bam	SRR1386491	@dbgap@:reads/SRP012000/SRS118044/SRX593996/SRR1386491/SRR1386491.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANCSC-04A-02D_TARGET-20-PANCSC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANCSC-14A-01D A42559 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42559	SRX593996	"Specific Capture analysis of normal sample TARGET-20-PANCSC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANCSC-14A-01D A42559 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42559_1_lane_dupsFlagged.bam	SRR1386491	@dbgap@:reads/SRP012000/SRS118044/SRX593996/SRR1386491/SRR1386491.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANCSC-04A-02D_TARGET-20-PANCSC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANCSC-14A-01D A42559 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42559	SRX593996	"Specific Capture analysis of normal sample TARGET-20-PANCSC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANCSC-14A-01D A42559 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42559_1_lane_dupsFlagged.bam	SRR1386491	@dbgap@:reads/SRP012000/SRS118044/SRX593996/SRR1386491/SRR1386491.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANCSC-09A-03D_TARGET-20-PANCSC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-14A-01D	DNA	EFO	SRS118044	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANCSC-14A-01D A42559 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42559	SRX593996	"Specific Capture analysis of normal sample TARGET-20-PANCSC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANCSC-14A-01D A42559 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42559_1_lane_dupsFlagged.bam	SRR1386491	@dbgap@:reads/SRP012000/SRS118044/SRX593996/SRR1386491/SRR1386491.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANCSC-09A-03D_TARGET-20-PANCSC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02D	DNA	EFO	SRS489716	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDER-09A-02D A41858 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41858	SRX593299	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANDER-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANDER-09A-02D A41858 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41858_1_lane_dupsFlagged.bam	SRR1385779	@dbgap@:reads/SRP012000/SRS489716/SRX593299/SRR1385779/SRR1385779.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANDER-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANDER-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02D	DNA	EFO	SRS489716	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDER-09A-02D A41858 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41858	SRX593299	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANDER-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANDER-09A-02D A41858 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41858_1_lane_dupsFlagged.bam	SRR1385779	@dbgap@:reads/SRP012000/SRS489716/SRX593299/SRR1385779/SRR1385779.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANDER-09A-02D_TARGET-20-PANDER-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02D	DNA	EFO	SRS489716	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDER-09A-02D A41858 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41858	SRX593299	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANDER-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANDER-09A-02D A41858 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41858_1_lane_dupsFlagged.bam	SRR1385779	@dbgap@:reads/SRP012000/SRS489716/SRX593299/SRR1385779/SRR1385779.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANDER-09A-02D_TARGET-20-PANDER-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-14A-01D	DNA	EFO	SRS489715	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDER-14A-01D A41520 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41520	SRX590788	"Specific Capture analysis of normal sample TARGET-20-PANDER-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANDER-14A-01D A41520 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41520_1_lane_dupsFlagged.bam	SRR1379819	@dbgap@:reads/SRP012000/SRS489715/SRX590788/SRR1379819/SRR1379819.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANDER-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANDER-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-14A-01D	DNA	EFO	SRS489715	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDER-14A-01D A41520 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41520	SRX590788	"Specific Capture analysis of normal sample TARGET-20-PANDER-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANDER-14A-01D A41520 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41520_1_lane_dupsFlagged.bam	SRR1379819	@dbgap@:reads/SRP012000/SRS489715/SRX590788/SRR1379819/SRR1379819.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANDER-09A-02D_TARGET-20-PANDER-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-14A-01D	DNA	EFO	SRS489715	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDER-14A-01D A41520 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41520	SRX590788	"Specific Capture analysis of normal sample TARGET-20-PANDER-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANDER-14A-01D A41520 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41520_1_lane_dupsFlagged.bam	SRR1379819	@dbgap@:reads/SRP012000/SRS489715/SRX590788/SRR1379819/SRR1379819.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANDER-09A-02D_TARGET-20-PANDER-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-04A-02D	DNA	EFO	SRS637516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDIX-04A-02D A42735 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42735	SRX597952	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANDIX-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PANDIX-04A-02D A42735 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42735_1_lane_dupsFlagged.bam	SRR1395266	@dbgap@:reads/SRP012000/SRS637516/SRX597952/SRR1395266/SRR1395266.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANDIX-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANDIX-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-04A-02D	DNA	EFO	SRS637516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDIX-04A-02D A42735 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42735	SRX597952	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANDIX-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PANDIX-04A-02D A42735 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42735_1_lane_dupsFlagged.bam	SRR1395266	@dbgap@:reads/SRP012000/SRS637516/SRX597952/SRR1395266/SRR1395266.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANDIX-04A-02D_TARGET-20-PANDIX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-04A-02D	DNA	EFO	SRS637516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDIX-04A-02D A42735 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42735	SRX597952	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANDIX-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PANDIX-04A-02D A42735 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42735_1_lane_dupsFlagged.bam	SRR1395266	@dbgap@:reads/SRP012000/SRS637516/SRX597952/SRR1395266/SRR1395266.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANDIX-04A-02D_TARGET-20-PANDIX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-02D	DNA	EFO	SRS270642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDIX-09A-02D A41840 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41840	SRX593372	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANDIX-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANDIX-09A-02D A41840 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41840_1_lane_dupsFlagged.bam	SRR1385809	@dbgap@:reads/SRP012000/SRS270642/SRX593372/SRR1385809/SRR1385809.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANDIX-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANDIX-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-02D	DNA	EFO	SRS270642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDIX-09A-02D A41840 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41840	SRX593372	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANDIX-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANDIX-09A-02D A41840 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41840_1_lane_dupsFlagged.bam	SRR1385809	@dbgap@:reads/SRP012000/SRS270642/SRX593372/SRR1385809/SRR1385809.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANDIX-09A-02D_TARGET-20-PANDIX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-02D	DNA	EFO	SRS270642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDIX-09A-02D A41840 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41840	SRX593372	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANDIX-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANDIX-09A-02D A41840 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41840_1_lane_dupsFlagged.bam	SRR1385809	@dbgap@:reads/SRP012000/SRS270642/SRX593372/SRR1385809/SRR1385809.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANDIX-09A-02D_TARGET-20-PANDIX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-01D	DNA	EFO	SRS636003	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDIX-14A-01D A42560 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42560	SRX593974	"Specific Capture analysis of normal sample TARGET-20-PANDIX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANDIX-14A-01D A42560 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42560_1_lane_dupsFlagged.bam	SRR1386446	@dbgap@:reads/SRP012000/SRS636003/SRX593974/SRR1386446/SRR1386446.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANDIX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANDIX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-01D	DNA	EFO	SRS636003	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDIX-14A-01D A42560 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42560	SRX593974	"Specific Capture analysis of normal sample TARGET-20-PANDIX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANDIX-14A-01D A42560 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42560_1_lane_dupsFlagged.bam	SRR1386446	@dbgap@:reads/SRP012000/SRS636003/SRX593974/SRR1386446/SRR1386446.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANDIX-04A-02D_TARGET-20-PANDIX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-01D	DNA	EFO	SRS636003	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDIX-14A-01D A42560 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42560	SRX593974	"Specific Capture analysis of normal sample TARGET-20-PANDIX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANDIX-14A-01D A42560 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42560_1_lane_dupsFlagged.bam	SRR1386446	@dbgap@:reads/SRP012000/SRS636003/SRX593974/SRR1386446/SRR1386446.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANDIX-04A-02D_TARGET-20-PANDIX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-01D	DNA	EFO	SRS636003	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDIX-14A-01D A42560 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42560	SRX593974	"Specific Capture analysis of normal sample TARGET-20-PANDIX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANDIX-14A-01D A42560 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42560_1_lane_dupsFlagged.bam	SRR1386446	@dbgap@:reads/SRP012000/SRS636003/SRX593974/SRR1386446/SRR1386446.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANDIX-09A-02D_TARGET-20-PANDIX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-14A-01D	DNA	EFO	SRS636003	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDIX-14A-01D A42560 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42560	SRX593974	"Specific Capture analysis of normal sample TARGET-20-PANDIX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANDIX-14A-01D A42560 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42560_1_lane_dupsFlagged.bam	SRR1386446	@dbgap@:reads/SRP012000/SRS636003/SRX593974/SRR1386446/SRR1386446.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANDIX-09A-02D_TARGET-20-PANDIX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-03D	DNA	EFO	SRS301019	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANFMG-09A-03D A41876 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41876	SRX593301	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANFMG-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANFMG-09A-03D A41876 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41876_1_lane_dupsFlagged.bam	SRR1385831	@dbgap@:reads/SRP012000/SRS301019/SRX593301/SRR1385831/SRR1385831.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANFMG-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANFMG-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03D	DNA	EFO	SRS301021	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGCM-03A-03D A41866 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41866	SRX593302	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANGCM-03A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANGCM-03A-03D A41866 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41866_1_lane_dupsFlagged.bam	SRR1385788	@dbgap@:reads/SRP012000/SRS301021/SRX593302/SRR1385788/SRR1385788.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANGCM-03A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANGCM-03A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03D	DNA	EFO	SRS301021	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGCM-03A-03D A41866 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41866	SRX593302	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANGCM-03A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANGCM-03A-03D A41866 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41866_1_lane_dupsFlagged.bam	SRR1385788	@dbgap@:reads/SRP012000/SRS301021/SRX593302/SRR1385788/SRR1385788.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANGCM-03A-03D_TARGET-20-PANGCM-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03D	DNA	EFO	SRS301021	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGCM-03A-03D A41866 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41866	SRX593302	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANGCM-03A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANGCM-03A-03D A41866 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41866_1_lane_dupsFlagged.bam	SRR1385788	@dbgap@:reads/SRP012000/SRS301021/SRX593302/SRR1385788/SRR1385788.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANGCM-03A-03D_TARGET-20-PANGCM-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-14A-02D	DNA	EFO	SRS301022	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGCM-14A-02D A41525 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41525	SRX590850	"Specific Capture analysis of normal sample TARGET-20-PANGCM-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANGCM-14A-02D A41525 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41525_1_lane_dupsFlagged.bam	SRR1379798	@dbgap@:reads/SRP012000/SRS301022/SRX590850/SRR1379798/SRR1379798.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANGCM-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANGCM-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-14A-02D	DNA	EFO	SRS301022	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGCM-14A-02D A41525 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41525	SRX590850	"Specific Capture analysis of normal sample TARGET-20-PANGCM-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANGCM-14A-02D A41525 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41525_1_lane_dupsFlagged.bam	SRR1379798	@dbgap@:reads/SRP012000/SRS301022/SRX590850/SRR1379798/SRR1379798.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANGCM-03A-03D_TARGET-20-PANGCM-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-14A-02D	DNA	EFO	SRS301022	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGCM-14A-02D A41525 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41525	SRX590850	"Specific Capture analysis of normal sample TARGET-20-PANGCM-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANGCM-14A-02D A41525 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41525_1_lane_dupsFlagged.bam	SRR1379798	@dbgap@:reads/SRP012000/SRS301022/SRX590850/SRR1379798/SRR1379798.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANGCM-03A-03D_TARGET-20-PANGCM-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03D	DNA	EFO	SRS489712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGJY-09A-03D A41867 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41867	SRX593378	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANGJY-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANGJY-09A-03D A41867 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41867_1_lane_dupsFlagged.bam	SRR1385778	@dbgap@:reads/SRP012000/SRS489712/SRX593378/SRR1385778/SRR1385778.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANGJY-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANGJY-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03D	DNA	EFO	SRS489712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGJY-09A-03D A41867 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41867	SRX593378	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANGJY-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANGJY-09A-03D A41867 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41867_1_lane_dupsFlagged.bam	SRR1385778	@dbgap@:reads/SRP012000/SRS489712/SRX593378/SRR1385778/SRR1385778.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANGJY-09A-03D_TARGET-20-PANGJY-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03D	DNA	EFO	SRS489712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGJY-09A-03D A41867 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41867	SRX593378	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANGJY-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANGJY-09A-03D A41867 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41867_1_lane_dupsFlagged.bam	SRR1385778	@dbgap@:reads/SRP012000/SRS489712/SRX593378/SRR1385778/SRR1385778.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANGJY-09A-03D_TARGET-20-PANGJY-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-14A-02D	DNA	EFO	SRS489711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGJY-14A-02D A41526 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41526	SRX590791	"Specific Capture analysis of normal sample TARGET-20-PANGJY-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANGJY-14A-02D A41526 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41526_1_lane_dupsFlagged.bam	SRR1379812	@dbgap@:reads/SRP012000/SRS489711/SRX590791/SRR1379812/SRR1379812.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANGJY-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANGJY-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-14A-02D	DNA	EFO	SRS489711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGJY-14A-02D A41526 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41526	SRX590791	"Specific Capture analysis of normal sample TARGET-20-PANGJY-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANGJY-14A-02D A41526 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41526_1_lane_dupsFlagged.bam	SRR1379812	@dbgap@:reads/SRP012000/SRS489711/SRX590791/SRR1379812/SRR1379812.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANGJY-09A-03D_TARGET-20-PANGJY-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-14A-02D	DNA	EFO	SRS489711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGJY-14A-02D A41526 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41526	SRX590791	"Specific Capture analysis of normal sample TARGET-20-PANGJY-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANGJY-14A-02D A41526 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41526_1_lane_dupsFlagged.bam	SRR1379812	@dbgap@:reads/SRP012000/SRS489711/SRX590791/SRR1379812/SRR1379812.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANGJY-09A-03D_TARGET-20-PANGJY-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-02D	DNA	EFO	SRS373867	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGTF-09A-02D A41897 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41897	SRX593417	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANGTF-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANGTF-09A-02D A41897 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41897_1_lane_dupsFlagged.bam	SRR1385877	@dbgap@:reads/SRP012000/SRS373867/SRX593417/SRR1385877/SRR1385877.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANGTF-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANGTF-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-02D	DNA	EFO	SRS373867	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGTF-09A-02D A41897 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41897	SRX593417	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANGTF-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANGTF-09A-02D A41897 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41897_1_lane_dupsFlagged.bam	SRR1385877	@dbgap@:reads/SRP012000/SRS373867/SRX593417/SRR1385877/SRR1385877.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANGTF-09A-02D_TARGET-20-PANGTF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-02D	DNA	EFO	SRS373867	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGTF-09A-02D A41897 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41897	SRX593417	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANGTF-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANGTF-09A-02D A41897 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41897_1_lane_dupsFlagged.bam	SRR1385877	@dbgap@:reads/SRP012000/SRS373867/SRX593417/SRR1385877/SRR1385877.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANGTF-09A-02D_TARGET-20-PANGTF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGTF-14A-01D A42953 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42953	SRX597908	"Specific Capture analysis of normal sample TARGET-20-PANGTF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PANGTF-14A-01D A42953 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42953_1_lane_dupsFlagged.bam	SRR1395183	@dbgap@:reads/SRP012000/SRS160277/SRX597908/SRR1395183/SRR1395183.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANGTF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANGTF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGTF-14A-01D A42953 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42953	SRX597908	"Specific Capture analysis of normal sample TARGET-20-PANGTF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PANGTF-14A-01D A42953 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42953_1_lane_dupsFlagged.bam	SRR1395183	@dbgap@:reads/SRP012000/SRS160277/SRX597908/SRR1395183/SRR1395183.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANGTF-09A-02D_TARGET-20-PANGTF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGTF-14A-01D A42953 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42953	SRX597908	"Specific Capture analysis of normal sample TARGET-20-PANGTF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PANGTF-14A-01D A42953 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42953_1_lane_dupsFlagged.bam	SRR1395183	@dbgap@:reads/SRP012000/SRS160277/SRX597908/SRR1395183/SRR1395183.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANGTF-09A-02D_TARGET-20-PANGTF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-02D	DNA	EFO	SRS635567	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANHYK-09A-02D A41891 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41891	SRX593386	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANHYK-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANHYK-09A-02D A41891 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41891_1_lane_dupsFlagged.bam	SRR1385899	@dbgap@:reads/SRP012000/SRS635567/SRX593386/SRR1385899/SRR1385899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANHYK-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANHYK-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-02D	DNA	EFO	SRS635567	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANHYK-09A-02D A41891 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41891	SRX593386	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANHYK-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANHYK-09A-02D A41891 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41891_1_lane_dupsFlagged.bam	SRR1385899	@dbgap@:reads/SRP012000/SRS635567/SRX593386/SRR1385899/SRR1385899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANHYK-09A-02D_TARGET-20-PANHYK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-02D	DNA	EFO	SRS635567	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANHYK-09A-02D A41891 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41891	SRX593386	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANHYK-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANHYK-09A-02D A41891 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41891_1_lane_dupsFlagged.bam	SRR1385899	@dbgap@:reads/SRP012000/SRS635567/SRX593386/SRR1385899/SRR1385899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANHYK-09A-02D_TARGET-20-PANHYK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-14A-01D	DNA	EFO	SRS637497	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANHYK-14A-01D A42954 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42954	SRX597927	"Specific Capture analysis of normal sample TARGET-20-PANHYK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PANHYK-14A-01D A42954 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42954_1_lane_dupsFlagged.bam	SRR1395149	@dbgap@:reads/SRP012000/SRS637497/SRX597927/SRR1395149/SRR1395149.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANHYK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANHYK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-14A-01D	DNA	EFO	SRS637497	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANHYK-14A-01D A42954 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42954	SRX597927	"Specific Capture analysis of normal sample TARGET-20-PANHYK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PANHYK-14A-01D A42954 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42954_1_lane_dupsFlagged.bam	SRR1395149	@dbgap@:reads/SRP012000/SRS637497/SRX597927/SRR1395149/SRR1395149.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANHYK-09A-02D_TARGET-20-PANHYK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-14A-01D	DNA	EFO	SRS637497	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANHYK-14A-01D A42954 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42954	SRX597927	"Specific Capture analysis of normal sample TARGET-20-PANHYK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PANHYK-14A-01D A42954 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42954_1_lane_dupsFlagged.bam	SRR1395149	@dbgap@:reads/SRP012000/SRS637497/SRX597927/SRR1395149/SRR1395149.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANHYK-09A-02D_TARGET-20-PANHYK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03D	DNA	EFO	SRS301025	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANINI-09A-03D A41868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41868	SRX593343	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANINI-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANINI-09A-03D A41868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41868_1_lane_dupsFlagged.bam	SRR1385811	@dbgap@:reads/SRP012000/SRS301025/SRX593343/SRR1385811/SRR1385811.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANINI-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANINI-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03D	DNA	EFO	SRS301025	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANINI-09A-03D A41868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41868	SRX593343	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANINI-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANINI-09A-03D A41868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41868_1_lane_dupsFlagged.bam	SRR1385811	@dbgap@:reads/SRP012000/SRS301025/SRX593343/SRR1385811/SRR1385811.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANINI-09A-03D_TARGET-20-PANINI-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03D	DNA	EFO	SRS301025	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANINI-09A-03D A41868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41868	SRX593343	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANINI-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANINI-09A-03D A41868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41868_1_lane_dupsFlagged.bam	SRR1385811	@dbgap@:reads/SRP012000/SRS301025/SRX593343/SRR1385811/SRR1385811.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANINI-09A-03D_TARGET-20-PANINI-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-14A-02D	DNA	EFO	SRS301026	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANINI-14A-02D A42555 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42555	SRX593920	"Specific Capture analysis of normal sample TARGET-20-PANINI-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANINI-14A-02D A42555 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42555_1_lane_dupsFlagged.bam	SRR1386475	@dbgap@:reads/SRP012000/SRS301026/SRX593920/SRR1386475/SRR1386475.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANINI-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANINI-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-14A-02D	DNA	EFO	SRS301026	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANINI-14A-02D A42555 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42555	SRX593920	"Specific Capture analysis of normal sample TARGET-20-PANINI-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANINI-14A-02D A42555 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42555_1_lane_dupsFlagged.bam	SRR1386475	@dbgap@:reads/SRP012000/SRS301026/SRX593920/SRR1386475/SRR1386475.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANINI-09A-03D_TARGET-20-PANINI-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-14A-02D	DNA	EFO	SRS301026	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANINI-14A-02D A42555 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42555	SRX593920	"Specific Capture analysis of normal sample TARGET-20-PANINI-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANINI-14A-02D A42555 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42555_1_lane_dupsFlagged.bam	SRR1386475	@dbgap@:reads/SRP012000/SRS301026/SRX593920/SRR1386475/SRR1386475.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANINI-09A-03D_TARGET-20-PANINI-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03D	DNA	EFO	SRS301027	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANJGR-09A-03D A41869 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41869	SRX593294	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANJGR-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANJGR-09A-03D A41869 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41869_1_lane_dupsFlagged.bam	SRR1385807	@dbgap@:reads/SRP012000/SRS301027/SRX593294/SRR1385807/SRR1385807.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANJGR-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANJGR-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03D	DNA	EFO	SRS301027	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANJGR-09A-03D A41869 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41869	SRX593294	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANJGR-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANJGR-09A-03D A41869 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41869_1_lane_dupsFlagged.bam	SRR1385807	@dbgap@:reads/SRP012000/SRS301027/SRX593294/SRR1385807/SRR1385807.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANJGR-09A-03D_TARGET-20-PANJGR-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03D	DNA	EFO	SRS301027	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANJGR-09A-03D A41869 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41869	SRX593294	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANJGR-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANJGR-09A-03D A41869 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41869_1_lane_dupsFlagged.bam	SRR1385807	@dbgap@:reads/SRP012000/SRS301027/SRX593294/SRR1385807/SRR1385807.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANJGR-09A-03D_TARGET-20-PANJGR-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-14A-02D	DNA	EFO	SRS301028	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANJGR-14A-02D A41527 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41527	SRX590843	"Specific Capture analysis of normal sample TARGET-20-PANJGR-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANJGR-14A-02D A41527 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41527_1_lane_dupsFlagged.bam	SRR1379828	@dbgap@:reads/SRP012000/SRS301028/SRX590843/SRR1379828/SRR1379828.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANJGR-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANJGR-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-14A-02D	DNA	EFO	SRS301028	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANJGR-14A-02D A41527 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41527	SRX590843	"Specific Capture analysis of normal sample TARGET-20-PANJGR-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANJGR-14A-02D A41527 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41527_1_lane_dupsFlagged.bam	SRR1379828	@dbgap@:reads/SRP012000/SRS301028/SRX590843/SRR1379828/SRR1379828.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANJGR-09A-03D_TARGET-20-PANJGR-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-14A-02D	DNA	EFO	SRS301028	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANJGR-14A-02D A41527 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41527	SRX590843	"Specific Capture analysis of normal sample TARGET-20-PANJGR-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANJGR-14A-02D A41527 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41527_1_lane_dupsFlagged.bam	SRR1379828	@dbgap@:reads/SRP012000/SRS301028/SRX590843/SRR1379828/SRR1379828.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANJGR-09A-03D_TARGET-20-PANJGR-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-02D	DNA	EFO	SRS635574	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFG-09A-02D A41904 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41904	SRX593393	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANKFG-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANKFG-09A-02D A41904 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41904_1_lane_dupsFlagged.bam	SRR1385909	@dbgap@:reads/SRP012000/SRS635574/SRX593393/SRR1385909/SRR1385909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANKFG-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANKFG-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-02D	DNA	EFO	SRS635574	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFG-09A-02D A41904 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41904	SRX593393	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANKFG-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANKFG-09A-02D A41904 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41904_1_lane_dupsFlagged.bam	SRR1385909	@dbgap@:reads/SRP012000/SRS635574/SRX593393/SRR1385909/SRR1385909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANKFG-09A-02D_TARGET-20-PANKFG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-02D	DNA	EFO	SRS635574	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFG-09A-02D A41904 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41904	SRX593393	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANKFG-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANKFG-09A-02D A41904 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41904_1_lane_dupsFlagged.bam	SRR1385909	@dbgap@:reads/SRP012000/SRS635574/SRX593393/SRR1385909/SRR1385909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANKFG-09A-02D_TARGET-20-PANKFG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-14A-01D	DNA	EFO	SRS636012	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFG-14A-01D A42562 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42562	SRX593985	"Specific Capture analysis of normal sample TARGET-20-PANKFG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANKFG-14A-01D A42562 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42562_1_lane_dupsFlagged.bam	SRR1386429	@dbgap@:reads/SRP012000/SRS636012/SRX593985/SRR1386429/SRR1386429.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANKFG-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANKFG-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-14A-01D	DNA	EFO	SRS636012	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFG-14A-01D A42562 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42562	SRX593985	"Specific Capture analysis of normal sample TARGET-20-PANKFG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANKFG-14A-01D A42562 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42562_1_lane_dupsFlagged.bam	SRR1386429	@dbgap@:reads/SRP012000/SRS636012/SRX593985/SRR1386429/SRR1386429.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANKFG-09A-02D_TARGET-20-PANKFG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-14A-01D	DNA	EFO	SRS636012	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFG-14A-01D A42562 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42562	SRX593985	"Specific Capture analysis of normal sample TARGET-20-PANKFG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANKFG-14A-01D A42562 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42562_1_lane_dupsFlagged.bam	SRR1386429	@dbgap@:reads/SRP012000/SRS636012/SRX593985/SRR1386429/SRR1386429.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANKFG-09A-02D_TARGET-20-PANKFG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-02D	DNA	EFO	SRS489718	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFZ-09A-02D A41870 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41870	SRX593364	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANKFZ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANKFZ-09A-02D A41870 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41870_1_lane_dupsFlagged.bam	SRR1385816	@dbgap@:reads/SRP012000/SRS489718/SRX593364/SRR1385816/SRR1385816.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANKFZ-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANKFZ-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-02D	DNA	EFO	SRS489718	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFZ-09A-02D A41870 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41870	SRX593364	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANKFZ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANKFZ-09A-02D A41870 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41870_1_lane_dupsFlagged.bam	SRR1385816	@dbgap@:reads/SRP012000/SRS489718/SRX593364/SRR1385816/SRR1385816.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANKFZ-09A-02D_TARGET-20-PANKFZ-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-02D	DNA	EFO	SRS489718	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFZ-09A-02D A41870 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41870	SRX593364	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANKFZ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANKFZ-09A-02D A41870 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41870_1_lane_dupsFlagged.bam	SRR1385816	@dbgap@:reads/SRP012000/SRS489718/SRX593364/SRR1385816/SRR1385816.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANKFZ-09A-02D_TARGET-20-PANKFZ-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-14A-02D	DNA	EFO	SRS489717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFZ-14A-02D A41523 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41523	SRX590862	"Specific Capture analysis of normal sample TARGET-20-PANKFZ-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANKFZ-14A-02D A41523 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41523_1_lane_dupsFlagged.bam	SRR1379848	@dbgap@:reads/SRP012000/SRS489717/SRX590862/SRR1379848/SRR1379848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANKFZ-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANKFZ-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-14A-02D	DNA	EFO	SRS489717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFZ-14A-02D A41523 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41523	SRX590862	"Specific Capture analysis of normal sample TARGET-20-PANKFZ-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANKFZ-14A-02D A41523 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41523_1_lane_dupsFlagged.bam	SRR1379848	@dbgap@:reads/SRP012000/SRS489717/SRX590862/SRR1379848/SRR1379848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANKFZ-09A-02D_TARGET-20-PANKFZ-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-14A-02D	DNA	EFO	SRS489717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFZ-14A-02D A41523 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41523	SRX590862	"Specific Capture analysis of normal sample TARGET-20-PANKFZ-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANKFZ-14A-02D A41523 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41523_1_lane_dupsFlagged.bam	SRR1379848	@dbgap@:reads/SRP012000/SRS489717/SRX590862/SRR1379848/SRR1379848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANKFZ-09A-02D_TARGET-20-PANKFZ-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03D	DNA	EFO	SRS301031	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKKE-09A-03D A41872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41872	SRX593325	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANKKE-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANKKE-09A-03D A41872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41872_1_lane_dupsFlagged.bam	SRR1385841	@dbgap@:reads/SRP012000/SRS301031/SRX593325/SRR1385841/SRR1385841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANKKE-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANKKE-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03D	DNA	EFO	SRS301031	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKKE-09A-03D A41872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41872	SRX593325	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANKKE-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANKKE-09A-03D A41872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41872_1_lane_dupsFlagged.bam	SRR1385841	@dbgap@:reads/SRP012000/SRS301031/SRX593325/SRR1385841/SRR1385841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANKKE-09A-03D_TARGET-20-PANKKE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03D	DNA	EFO	SRS301031	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKKE-09A-03D A41872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41872	SRX593325	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANKKE-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANKKE-09A-03D A41872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41872_1_lane_dupsFlagged.bam	SRR1385841	@dbgap@:reads/SRP012000/SRS301031/SRX593325/SRR1385841/SRR1385841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANKKE-09A-03D_TARGET-20-PANKKE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-14A-01D	DNA	EFO	SRS636030	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKKE-14A-01D A42561 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42561	SRX594008	"Specific Capture analysis of normal sample TARGET-20-PANKKE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANKKE-14A-01D A42561 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42561_1_lane_dupsFlagged.bam	SRR1386421	@dbgap@:reads/SRP012000/SRS636030/SRX594008/SRR1386421/SRR1386421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANKKE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANKKE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-14A-01D	DNA	EFO	SRS636030	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKKE-14A-01D A42561 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42561	SRX594008	"Specific Capture analysis of normal sample TARGET-20-PANKKE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANKKE-14A-01D A42561 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42561_1_lane_dupsFlagged.bam	SRR1386421	@dbgap@:reads/SRP012000/SRS636030/SRX594008/SRR1386421/SRR1386421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANKKE-09A-03D_TARGET-20-PANKKE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-14A-01D	DNA	EFO	SRS636030	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKKE-14A-01D A42561 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42561	SRX594008	"Specific Capture analysis of normal sample TARGET-20-PANKKE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANKKE-14A-01D A42561 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42561_1_lane_dupsFlagged.bam	SRR1386421	@dbgap@:reads/SRP012000/SRS636030/SRX594008/SRR1386421/SRR1386421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANKKE-09A-03D_TARGET-20-PANKKE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-02D	DNA	EFO	SRS489679	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKNB-09A-02D A41871 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41871	SRX593361	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANKNB-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANKNB-09A-02D A41871 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41871_1_lane_dupsFlagged.bam	SRR1385803	@dbgap@:reads/SRP012000/SRS489679/SRX593361/SRR1385803/SRR1385803.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANKNB-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANKNB-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-04A-01D	DNA	EFO	SRS270648	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIR-04A-01D A42266 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42266	SRX597745	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANLIR-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANLIR-04A-01D A42266 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42266_1_lane_dupsFlagged.bam	SRR1395028	@dbgap@:reads/SRP012000/SRS270648/SRX597745/SRR1395028/SRR1395028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANLIR-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANLIR-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02D	DNA	EFO	SRS270650	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIZ-04A-02D A42274 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42274	SRX597742	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANLIZ-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANLIZ-04A-02D A42274 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42274_1_lane_dupsFlagged.bam	SRR1394984	@dbgap@:reads/SRP012000/SRS270650/SRX597742/SRR1394984/SRR1394984.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANLIZ-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANLIZ-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03D	DNA	EFO	SRS301033	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLJN-09A-03D A41873 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41873	SRX593311	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANLJN-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANLJN-09A-03D A41873 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41873_1_lane_dupsFlagged.bam	SRR1385835	@dbgap@:reads/SRP012000/SRS301033/SRX593311/SRR1385835/SRR1385835.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANLJN-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANLJN-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03D	DNA	EFO	SRS301033	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLJN-09A-03D A41873 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41873	SRX593311	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANLJN-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANLJN-09A-03D A41873 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41873_1_lane_dupsFlagged.bam	SRR1385835	@dbgap@:reads/SRP012000/SRS301033/SRX593311/SRR1385835/SRR1385835.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANLJN-09A-03D_TARGET-20-PANLJN-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03D	DNA	EFO	SRS301033	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLJN-09A-03D A41873 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41873	SRX593311	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANLJN-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANLJN-09A-03D A41873 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41873_1_lane_dupsFlagged.bam	SRR1385835	@dbgap@:reads/SRP012000/SRS301033/SRX593311/SRR1385835/SRR1385835.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANLJN-09A-03D_TARGET-20-PANLJN-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-14A-02D	DNA	EFO	SRS301034	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLJN-14A-02D A41528 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41528	SRX590809	"Specific Capture analysis of normal sample TARGET-20-PANLJN-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANLJN-14A-02D A41528 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41528_1_lane_dupsFlagged.bam	SRR1379862	@dbgap@:reads/SRP012000/SRS301034/SRX590809/SRR1379862/SRR1379862.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANLJN-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANLJN-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-14A-02D	DNA	EFO	SRS301034	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLJN-14A-02D A41528 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41528	SRX590809	"Specific Capture analysis of normal sample TARGET-20-PANLJN-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANLJN-14A-02D A41528 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41528_1_lane_dupsFlagged.bam	SRR1379862	@dbgap@:reads/SRP012000/SRS301034/SRX590809/SRR1379862/SRR1379862.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANLJN-09A-03D_TARGET-20-PANLJN-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-14A-02D	DNA	EFO	SRS301034	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLJN-14A-02D A41528 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41528	SRX590809	"Specific Capture analysis of normal sample TARGET-20-PANLJN-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANLJN-14A-02D A41528 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41528_1_lane_dupsFlagged.bam	SRR1379862	@dbgap@:reads/SRP012000/SRS301034/SRX590809/SRR1379862/SRR1379862.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANLJN-09A-03D_TARGET-20-PANLJN-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03D	DNA	EFO	SRS301035	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLKB-09A-03D A41874 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41874	SRX593334	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANLKB-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANLKB-09A-03D A41874 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41874_1_lane_dupsFlagged.bam	SRR1385775	@dbgap@:reads/SRP012000/SRS301035/SRX593334/SRR1385775/SRR1385775.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANLKB-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANLKB-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03D	DNA	EFO	SRS301035	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLKB-09A-03D A41874 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41874	SRX593334	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANLKB-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANLKB-09A-03D A41874 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41874_1_lane_dupsFlagged.bam	SRR1385775	@dbgap@:reads/SRP012000/SRS301035/SRX593334/SRR1385775/SRR1385775.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANLKB-09A-03D_TARGET-20-PANLKB-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03D	DNA	EFO	SRS301035	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLKB-09A-03D A41874 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41874	SRX593334	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANLKB-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANLKB-09A-03D A41874 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41874_1_lane_dupsFlagged.bam	SRR1385775	@dbgap@:reads/SRP012000/SRS301035/SRX593334/SRR1385775/SRR1385775.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANLKB-09A-03D_TARGET-20-PANLKB-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-14A-02D	DNA	EFO	SRS301036	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLKB-14A-02D A41529 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41529	SRX590844	"Specific Capture analysis of normal sample TARGET-20-PANLKB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANLKB-14A-02D A41529 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41529_1_lane_dupsFlagged.bam	SRR1379840	@dbgap@:reads/SRP012000/SRS301036/SRX590844/SRR1379840/SRR1379840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANLKB-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANLKB-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-14A-02D	DNA	EFO	SRS301036	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLKB-14A-02D A41529 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41529	SRX590844	"Specific Capture analysis of normal sample TARGET-20-PANLKB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANLKB-14A-02D A41529 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41529_1_lane_dupsFlagged.bam	SRR1379840	@dbgap@:reads/SRP012000/SRS301036/SRX590844/SRR1379840/SRR1379840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANLKB-09A-03D_TARGET-20-PANLKB-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-14A-02D	DNA	EFO	SRS301036	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLKB-14A-02D A41529 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41529	SRX590844	"Specific Capture analysis of normal sample TARGET-20-PANLKB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANLKB-14A-02D A41529 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41529_1_lane_dupsFlagged.bam	SRR1379840	@dbgap@:reads/SRP012000/SRS301036/SRX590844/SRR1379840/SRR1379840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANLKB-09A-03D_TARGET-20-PANLKB-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-02D	DNA	EFO	SRS635588	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLLX-09A-02D A41905 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41905	SRX593407	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANLLX-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANLLX-09A-02D A41905 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41905_1_lane_dupsFlagged.bam	SRR1385882	@dbgap@:reads/SRP012000/SRS635588/SRX593407/SRR1385882/SRR1385882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANLLX-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANLLX-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-04A-01D	DNA	EFO	SRS270657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXM-04A-01D A42269 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42269	SRX597711	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANLXM-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANLXM-04A-01D A42269 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42269_1_lane_dupsFlagged.bam	SRR1395040	@dbgap@:reads/SRP012000/SRS270657/SRX597711/SRR1395040/SRR1395040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANLXM-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANLXM-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-04A-01D	DNA	EFO	SRS270657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXM-04A-01D A42269 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42269	SRX597711	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANLXM-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANLXM-04A-01D A42269 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42269_1_lane_dupsFlagged.bam	SRR1395040	@dbgap@:reads/SRP012000/SRS270657/SRX597711/SRR1395040/SRR1395040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANLXM-04A-01D_TARGET-20-PANLXM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-04A-01D	DNA	EFO	SRS270657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXM-04A-01D A42269 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42269	SRX597711	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANLXM-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANLXM-04A-01D A42269 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42269_1_lane_dupsFlagged.bam	SRR1395040	@dbgap@:reads/SRP012000/SRS270657/SRX597711/SRR1395040/SRR1395040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANLXM-04A-01D_TARGET-20-PANLXM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-02D	DNA	EFO	SRS287482	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXM-09A-02D A41838 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41838	SRX593331	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANLXM-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANLXM-09A-02D A41838 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41838_1_lane_dupsFlagged.bam	SRR1385855	@dbgap@:reads/SRP012000/SRS287482/SRX593331/SRR1385855/SRR1385855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANLXM-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANLXM-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-02D	DNA	EFO	SRS287482	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXM-09A-02D A41838 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41838	SRX593331	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANLXM-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANLXM-09A-02D A41838 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41838_1_lane_dupsFlagged.bam	SRR1385855	@dbgap@:reads/SRP012000/SRS287482/SRX593331/SRR1385855/SRR1385855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANLXM-09A-02D_TARGET-20-PANLXM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-02D	DNA	EFO	SRS287482	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXM-09A-02D A41838 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41838	SRX593331	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANLXM-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANLXM-09A-02D A41838 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41838_1_lane_dupsFlagged.bam	SRR1385855	@dbgap@:reads/SRP012000/SRS287482/SRX593331/SRR1385855/SRR1385855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANLXM-09A-02D_TARGET-20-PANLXM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXM-14A-01D A41521 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41521	SRX590847	"Specific Capture analysis of normal sample TARGET-20-PANLXM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANLXM-14A-01D A41521 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41521_1_lane_dupsFlagged.bam	SRR1379802	@dbgap@:reads/SRP012000/SRS270658/SRX590847/SRR1379802/SRR1379802.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANLXM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANLXM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXM-14A-01D A41521 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41521	SRX590847	"Specific Capture analysis of normal sample TARGET-20-PANLXM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANLXM-14A-01D A41521 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41521_1_lane_dupsFlagged.bam	SRR1379802	@dbgap@:reads/SRP012000/SRS270658/SRX590847/SRR1379802/SRR1379802.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANLXM-04A-01D_TARGET-20-PANLXM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXM-14A-01D A41521 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41521	SRX590847	"Specific Capture analysis of normal sample TARGET-20-PANLXM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANLXM-14A-01D A41521 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41521_1_lane_dupsFlagged.bam	SRR1379802	@dbgap@:reads/SRP012000/SRS270658/SRX590847/SRR1379802/SRR1379802.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANLXM-04A-01D_TARGET-20-PANLXM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXM-14A-01D A41521 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41521	SRX590847	"Specific Capture analysis of normal sample TARGET-20-PANLXM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANLXM-14A-01D A41521 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41521_1_lane_dupsFlagged.bam	SRR1379802	@dbgap@:reads/SRP012000/SRS270658/SRX590847/SRR1379802/SRR1379802.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANLXM-09A-02D_TARGET-20-PANLXM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-14A-01D	DNA	EFO	SRS270658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXM-14A-01D A41521 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41521	SRX590847	"Specific Capture analysis of normal sample TARGET-20-PANLXM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANLXM-14A-01D A41521 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41521_1_lane_dupsFlagged.bam	SRR1379802	@dbgap@:reads/SRP012000/SRS270658/SRX590847/SRR1379802/SRR1379802.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANLXM-09A-02D_TARGET-20-PANLXM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANMEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANMEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANMEM-03A-01D	DNA	EFO	SRS489725	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANMEM-03A-01D A41863 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41863	SRX593305	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANMEM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANMEM-03A-01D A41863 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41863_1_lane_dupsFlagged.bam	SRR1385818	@dbgap@:reads/SRP012000/SRS489725/SRX593305/SRR1385818/SRR1385818.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANMEM-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANMEM-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-04A-02D	DNA	EFO	SRS270660	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNHB-04A-02D A42272 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42272	SRX597712	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANNHB-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANNHB-04A-02D A42272 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42272_1_lane_dupsFlagged.bam	SRR1394964	@dbgap@:reads/SRP012000/SRS270660/SRX597712/SRR1394964/SRR1394964.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANNHB-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANNHB-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-04A-02D	DNA	EFO	SRS270660	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNHB-04A-02D A42272 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42272	SRX597712	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANNHB-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANNHB-04A-02D A42272 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42272_1_lane_dupsFlagged.bam	SRR1394964	@dbgap@:reads/SRP012000/SRS270660/SRX597712/SRR1394964/SRR1394964.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANNHB-04A-02D_TARGET-20-PANNHB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-04A-02D	DNA	EFO	SRS270660	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNHB-04A-02D A42272 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42272	SRX597712	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANNHB-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANNHB-04A-02D A42272 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42272_1_lane_dupsFlagged.bam	SRR1394964	@dbgap@:reads/SRP012000/SRS270660/SRX597712/SRR1394964/SRR1394964.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANNHB-04A-02D_TARGET-20-PANNHB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-02D	DNA	EFO	SRS635624	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNHB-09A-02D A41893 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41893	SRX593444	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANNHB-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANNHB-09A-02D A41893 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41893_1_lane_dupsFlagged.bam	SRR1385862	@dbgap@:reads/SRP012000/SRS635624/SRX593444/SRR1385862/SRR1385862.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANNHB-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANNHB-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-02D	DNA	EFO	SRS635624	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNHB-09A-02D A41893 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41893	SRX593444	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANNHB-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANNHB-09A-02D A41893 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41893_1_lane_dupsFlagged.bam	SRR1385862	@dbgap@:reads/SRP012000/SRS635624/SRX593444/SRR1385862/SRR1385862.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANNHB-09A-02D_TARGET-20-PANNHB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-02D	DNA	EFO	SRS635624	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNHB-09A-02D A41893 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41893	SRX593444	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANNHB-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANNHB-09A-02D A41893 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41893_1_lane_dupsFlagged.bam	SRR1385862	@dbgap@:reads/SRP012000/SRS635624/SRX593444/SRR1385862/SRR1385862.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANNHB-09A-02D_TARGET-20-PANNHB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNHB-14A-01D A42563 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42563	SRX594002	"Specific Capture analysis of normal sample TARGET-20-PANNHB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANNHB-14A-01D A42563 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42563_1_lane_dupsFlagged.bam	SRR1386468	@dbgap@:reads/SRP012000/SRS270661/SRX594002/SRR1386468/SRR1386468.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANNHB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANNHB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNHB-14A-01D A42563 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42563	SRX594002	"Specific Capture analysis of normal sample TARGET-20-PANNHB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANNHB-14A-01D A42563 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42563_1_lane_dupsFlagged.bam	SRR1386468	@dbgap@:reads/SRP012000/SRS270661/SRX594002/SRR1386468/SRR1386468.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANNHB-04A-02D_TARGET-20-PANNHB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNHB-14A-01D A42563 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42563	SRX594002	"Specific Capture analysis of normal sample TARGET-20-PANNHB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANNHB-14A-01D A42563 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42563_1_lane_dupsFlagged.bam	SRR1386468	@dbgap@:reads/SRP012000/SRS270661/SRX594002/SRR1386468/SRR1386468.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANNHB-04A-02D_TARGET-20-PANNHB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNHB-14A-01D A42563 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42563	SRX594002	"Specific Capture analysis of normal sample TARGET-20-PANNHB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANNHB-14A-01D A42563 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42563_1_lane_dupsFlagged.bam	SRR1386468	@dbgap@:reads/SRP012000/SRS270661/SRX594002/SRR1386468/SRR1386468.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANNHB-09A-02D_TARGET-20-PANNHB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-14A-01D	DNA	EFO	SRS270661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNHB-14A-01D A42563 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42563	SRX594002	"Specific Capture analysis of normal sample TARGET-20-PANNHB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANNHB-14A-01D A42563 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42563_1_lane_dupsFlagged.bam	SRR1386468	@dbgap@:reads/SRP012000/SRS270661/SRX594002/SRR1386468/SRR1386468.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANNHB-09A-02D_TARGET-20-PANNHB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-04D	DNA	EFO	SRS301037	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNJI-09A-04D A41875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41875	SRX593327	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANNJI-09A-04D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANNJI-09A-04D A41875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41875_1_lane_dupsFlagged.bam	SRR1385842	@dbgap@:reads/SRP012000/SRS301037/SRX593327/SRR1385842/SRR1385842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANNJI-09A-04D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANNJI-09A-04D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-04D	DNA	EFO	SRS301037	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNJI-09A-04D A41875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41875	SRX593327	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANNJI-09A-04D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANNJI-09A-04D A41875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41875_1_lane_dupsFlagged.bam	SRR1385842	@dbgap@:reads/SRP012000/SRS301037/SRX593327/SRR1385842/SRR1385842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANNJI-09A-04D_TARGET-20-PANNJI-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-04D	DNA	EFO	SRS301037	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNJI-09A-04D A41875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41875	SRX593327	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANNJI-09A-04D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANNJI-09A-04D A41875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41875_1_lane_dupsFlagged.bam	SRR1385842	@dbgap@:reads/SRP012000/SRS301037/SRX593327/SRR1385842/SRR1385842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANNJI-09A-04D_TARGET-20-PANNJI-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-14A-02D	DNA	EFO	SRS301038	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNJI-14A-02D A42772 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42772	SRX597820	"Specific Capture analysis of normal sample TARGET-20-PANNJI-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PANNJI-14A-02D A42772 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42772_1_lane_dupsFlagged.bam	SRR1395051	@dbgap@:reads/SRP012000/SRS301038/SRX597820/SRR1395051/SRR1395051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANNJI-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANNJI-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-14A-02D	DNA	EFO	SRS301038	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNJI-14A-02D A42772 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42772	SRX597820	"Specific Capture analysis of normal sample TARGET-20-PANNJI-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PANNJI-14A-02D A42772 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42772_1_lane_dupsFlagged.bam	SRR1395051	@dbgap@:reads/SRP012000/SRS301038/SRX597820/SRR1395051/SRR1395051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANNJI-09A-04D_TARGET-20-PANNJI-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-14A-02D	DNA	EFO	SRS301038	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNJI-14A-02D A42772 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42772	SRX597820	"Specific Capture analysis of normal sample TARGET-20-PANNJI-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PANNJI-14A-02D A42772 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42772_1_lane_dupsFlagged.bam	SRR1395051	@dbgap@:reads/SRP012000/SRS301038/SRX597820/SRR1395051/SRR1395051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANNJI-09A-04D_TARGET-20-PANNJI-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-02D	DNA	EFO	SRS635599	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPKN-09A-02D A41888 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41888	SRX593419	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANPKN-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANPKN-09A-02D A41888 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41888_1_lane_dupsFlagged.bam	SRR1385885	@dbgap@:reads/SRP012000/SRS635599/SRX593419/SRR1385885/SRR1385885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANPKN-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANPKN-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-02D	DNA	EFO	SRS635599	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPKN-09A-02D A41888 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41888	SRX593419	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANPKN-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANPKN-09A-02D A41888 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41888_1_lane_dupsFlagged.bam	SRR1385885	@dbgap@:reads/SRP012000/SRS635599/SRX593419/SRR1385885/SRR1385885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANPKN-09A-02D_TARGET-20-PANPKN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-02D	DNA	EFO	SRS635599	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPKN-09A-02D A41888 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41888	SRX593419	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANPKN-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANPKN-09A-02D A41888 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41888_1_lane_dupsFlagged.bam	SRR1385885	@dbgap@:reads/SRP012000/SRS635599/SRX593419/SRR1385885/SRR1385885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANPKN-09A-02D_TARGET-20-PANPKN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-14A-01D	DNA	EFO	SRS636020	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPKN-14A-01D A42556 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42556	SRX593993	"Specific Capture analysis of normal sample TARGET-20-PANPKN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANPKN-14A-01D A42556 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42556_1_lane_dupsFlagged.bam	SRR1386462	@dbgap@:reads/SRP012000/SRS636020/SRX593993/SRR1386462/SRR1386462.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANPKN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANPKN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-14A-01D	DNA	EFO	SRS636020	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPKN-14A-01D A42556 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42556	SRX593993	"Specific Capture analysis of normal sample TARGET-20-PANPKN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANPKN-14A-01D A42556 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42556_1_lane_dupsFlagged.bam	SRR1386462	@dbgap@:reads/SRP012000/SRS636020/SRX593993/SRR1386462/SRR1386462.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANPKN-09A-02D_TARGET-20-PANPKN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-14A-01D	DNA	EFO	SRS636020	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPKN-14A-01D A42556 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42556	SRX593993	"Specific Capture analysis of normal sample TARGET-20-PANPKN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANPKN-14A-01D A42556 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42556_1_lane_dupsFlagged.bam	SRR1386462	@dbgap@:reads/SRP012000/SRS636020/SRX593993/SRR1386462/SRR1386462.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANPKN-09A-02D_TARGET-20-PANPKN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-05D	DNA	EFO	SRS301041	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPLS-03A-05D A41877 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41877	SRX593366	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANPLS-03A-05D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANPLS-03A-05D A41877 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41877_1_lane_dupsFlagged.bam	SRR1385800	@dbgap@:reads/SRP012000/SRS301041/SRX593366/SRR1385800/SRR1385800.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANPLS-03A-05D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANPLS-03A-05D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-05D	DNA	EFO	SRS301041	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPLS-03A-05D A41877 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41877	SRX593366	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANPLS-03A-05D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANPLS-03A-05D A41877 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41877_1_lane_dupsFlagged.bam	SRR1385800	@dbgap@:reads/SRP012000/SRS301041/SRX593366/SRR1385800/SRR1385800.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANPLS-03A-05D_TARGET-20-PANPLS-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-05D	DNA	EFO	SRS301041	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPLS-03A-05D A41877 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41877	SRX593366	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANPLS-03A-05D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANPLS-03A-05D A41877 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41877_1_lane_dupsFlagged.bam	SRR1385800	@dbgap@:reads/SRP012000/SRS301041/SRX593366/SRR1385800/SRR1385800.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANPLS-03A-05D_TARGET-20-PANPLS-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-14A-02D	DNA	EFO	SRS301042	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPLS-14A-02D A41530 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41530	SRX590806	"Specific Capture analysis of normal sample TARGET-20-PANPLS-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANPLS-14A-02D A41530 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41530_1_lane_dupsFlagged.bam	SRR1379866	@dbgap@:reads/SRP012000/SRS301042/SRX590806/SRR1379866/SRR1379866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANPLS-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANPLS-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-14A-02D	DNA	EFO	SRS301042	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPLS-14A-02D A41530 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41530	SRX590806	"Specific Capture analysis of normal sample TARGET-20-PANPLS-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANPLS-14A-02D A41530 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41530_1_lane_dupsFlagged.bam	SRR1379866	@dbgap@:reads/SRP012000/SRS301042/SRX590806/SRR1379866/SRR1379866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANPLS-03A-05D_TARGET-20-PANPLS-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-14A-02D	DNA	EFO	SRS301042	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPLS-14A-02D A41530 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41530	SRX590806	"Specific Capture analysis of normal sample TARGET-20-PANPLS-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANPLS-14A-02D A41530 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41530_1_lane_dupsFlagged.bam	SRR1379866	@dbgap@:reads/SRP012000/SRS301042/SRX590806/SRR1379866/SRR1379866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANPLS-03A-05D_TARGET-20-PANPLS-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02D	DNA	EFO	SRS301043	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPTM-09A-02D A41878 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41878	SRX593332	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANPTM-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANPTM-09A-02D A41878 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41878_1_lane_dupsFlagged.bam	SRR1385798	@dbgap@:reads/SRP012000/SRS301043/SRX593332/SRR1385798/SRR1385798.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANPTM-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANPTM-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02D	DNA	EFO	SRS301043	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPTM-09A-02D A41878 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41878	SRX593332	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANPTM-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANPTM-09A-02D A41878 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41878_1_lane_dupsFlagged.bam	SRR1385798	@dbgap@:reads/SRP012000/SRS301043/SRX593332/SRR1385798/SRR1385798.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANPTM-09A-02D_TARGET-20-PANPTM-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02D	DNA	EFO	SRS301043	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPTM-09A-02D A41878 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41878	SRX593332	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANPTM-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANPTM-09A-02D A41878 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41878_1_lane_dupsFlagged.bam	SRR1385798	@dbgap@:reads/SRP012000/SRS301043/SRX593332/SRR1385798/SRR1385798.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANPTM-09A-02D_TARGET-20-PANPTM-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-14A-02D	DNA	EFO	SRS301044	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPTM-14A-02D A41531 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41531	SRX590826	"Specific Capture analysis of normal sample TARGET-20-PANPTM-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANPTM-14A-02D A41531 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41531_1_lane_dupsFlagged.bam	SRR1379879	@dbgap@:reads/SRP012000/SRS301044/SRX590826/SRR1379879/SRR1379879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANPTM-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANPTM-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-14A-02D	DNA	EFO	SRS301044	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPTM-14A-02D A41531 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41531	SRX590826	"Specific Capture analysis of normal sample TARGET-20-PANPTM-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANPTM-14A-02D A41531 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41531_1_lane_dupsFlagged.bam	SRR1379879	@dbgap@:reads/SRP012000/SRS301044/SRX590826/SRR1379879/SRR1379879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANPTM-09A-02D_TARGET-20-PANPTM-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-14A-02D	DNA	EFO	SRS301044	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPTM-14A-02D A41531 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41531	SRX590826	"Specific Capture analysis of normal sample TARGET-20-PANPTM-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANPTM-14A-02D A41531 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41531_1_lane_dupsFlagged.bam	SRR1379879	@dbgap@:reads/SRP012000/SRS301044/SRX590826/SRR1379879/SRR1379879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANPTM-09A-02D_TARGET-20-PANPTM-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-03D	DNA	EFO	SRS635613	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSBH-09A-03D A41894 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41894	SRX593435	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANSBH-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANSBH-09A-03D A41894 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41894_1_lane_dupsFlagged.bam	SRR1385861	@dbgap@:reads/SRP012000/SRS635613/SRX593435/SRR1385861/SRR1385861.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANSBH-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANSBH-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-03D	DNA	EFO	SRS635613	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSBH-09A-03D A41894 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41894	SRX593435	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANSBH-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANSBH-09A-03D A41894 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41894_1_lane_dupsFlagged.bam	SRR1385861	@dbgap@:reads/SRP012000/SRS635613/SRX593435/SRR1385861/SRR1385861.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANSBH-09A-03D_TARGET-20-PANSBH-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-03D	DNA	EFO	SRS635613	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSBH-09A-03D A41894 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41894	SRX593435	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANSBH-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANSBH-09A-03D A41894 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41894_1_lane_dupsFlagged.bam	SRR1385861	@dbgap@:reads/SRP012000/SRS635613/SRX593435/SRR1385861/SRR1385861.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANSBH-09A-03D_TARGET-20-PANSBH-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-02D	DNA	EFO	SRS637434	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSBH-14A-02D A42852 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42852	SRX597844	"Specific Capture analysis of normal sample TARGET-20-PANSBH-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PANSBH-14A-02D A42852 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42852_1_lane_dupsFlagged.bam	SRR1395128	@dbgap@:reads/SRP012000/SRS637434/SRX597844/SRR1395128/SRR1395128.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANSBH-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANSBH-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-02D	DNA	EFO	SRS637434	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSBH-14A-02D A42852 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42852	SRX597844	"Specific Capture analysis of normal sample TARGET-20-PANSBH-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PANSBH-14A-02D A42852 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42852_1_lane_dupsFlagged.bam	SRR1395128	@dbgap@:reads/SRP012000/SRS637434/SRX597844/SRR1395128/SRR1395128.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANSBH-09A-03D_TARGET-20-PANSBH-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-02D	DNA	EFO	SRS637434	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSBH-14A-02D A42852 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42852	SRX597844	"Specific Capture analysis of normal sample TARGET-20-PANSBH-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PANSBH-14A-02D A42852 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42852_1_lane_dupsFlagged.bam	SRR1395128	@dbgap@:reads/SRP012000/SRS637434/SRX597844/SRR1395128/SRR1395128.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANSBH-09A-03D_TARGET-20-PANSBH-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01D	DNA	EFO	SRS489704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSJB-09A-01D A41839 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41839	SRX593335	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANSJB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANSJB-09A-01D A41839 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41839_1_lane_dupsFlagged.bam	SRR1385812	@dbgap@:reads/SRP012000/SRS489704/SRX593335/SRR1385812/SRR1385812.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANSJB-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANSJB-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01D	DNA	EFO	SRS489704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSJB-09A-01D A41839 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41839	SRX593335	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANSJB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANSJB-09A-01D A41839 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41839_1_lane_dupsFlagged.bam	SRR1385812	@dbgap@:reads/SRP012000/SRS489704/SRX593335/SRR1385812/SRR1385812.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANSJB-09A-01D_TARGET-20-PANSJB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01D	DNA	EFO	SRS489704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSJB-09A-01D A41839 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41839	SRX593335	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANSJB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANSJB-09A-01D A41839 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41839_1_lane_dupsFlagged.bam	SRR1385812	@dbgap@:reads/SRP012000/SRS489704/SRX593335/SRR1385812/SRR1385812.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANSJB-09A-01D_TARGET-20-PANSJB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-14A-01D	DNA	EFO	SRS489703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSJB-14A-01D A41522 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41522	SRX590782	"Specific Capture analysis of normal sample TARGET-20-PANSJB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANSJB-14A-01D A41522 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41522_1_lane_dupsFlagged.bam	SRR1379844	@dbgap@:reads/SRP012000/SRS489703/SRX590782/SRR1379844/SRR1379844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANSJB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANSJB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-14A-01D	DNA	EFO	SRS489703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSJB-14A-01D A41522 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41522	SRX590782	"Specific Capture analysis of normal sample TARGET-20-PANSJB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANSJB-14A-01D A41522 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41522_1_lane_dupsFlagged.bam	SRR1379844	@dbgap@:reads/SRP012000/SRS489703/SRX590782/SRR1379844/SRR1379844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANSJB-09A-01D_TARGET-20-PANSJB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-14A-01D	DNA	EFO	SRS489703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSJB-14A-01D A41522 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41522	SRX590782	"Specific Capture analysis of normal sample TARGET-20-PANSJB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANSJB-14A-01D A41522 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41522_1_lane_dupsFlagged.bam	SRR1379844	@dbgap@:reads/SRP012000/SRS489703/SRX590782/SRR1379844/SRR1379844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANSJB-09A-01D_TARGET-20-PANSJB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-04A-01D	DNA	EFO	SRS270664	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTNA-04A-01D A42265 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42265	SRX597685	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANTNA-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANTNA-04A-01D A42265 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42265_1_lane_dupsFlagged.bam	SRR1395041	@dbgap@:reads/SRP012000/SRS270664/SRX597685/SRR1395041/SRR1395041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANTNA-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANTNA-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-04A-01D	DNA	EFO	SRS270664	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTNA-04A-01D A42265 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42265	SRX597685	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANTNA-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANTNA-04A-01D A42265 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42265_1_lane_dupsFlagged.bam	SRR1395041	@dbgap@:reads/SRP012000/SRS270664/SRX597685/SRR1395041/SRR1395041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANTNA-04A-01D_TARGET-20-PANTNA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-04A-01D	DNA	EFO	SRS270664	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTNA-04A-01D A42265 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42265	SRX597685	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANTNA-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANTNA-04A-01D A42265 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42265_1_lane_dupsFlagged.bam	SRR1395041	@dbgap@:reads/SRP012000/SRS270664/SRX597685/SRR1395041/SRR1395041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANTNA-04A-01D_TARGET-20-PANTNA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-03D	DNA	EFO	SRS635576	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTNA-09A-03D A41889 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41889	SRX593395	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANTNA-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANTNA-09A-03D A41889 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41889_1_lane_dupsFlagged.bam	SRR1385869	@dbgap@:reads/SRP012000/SRS635576/SRX593395/SRR1385869/SRR1385869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANTNA-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANTNA-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-03D	DNA	EFO	SRS635576	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTNA-09A-03D A41889 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41889	SRX593395	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANTNA-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANTNA-09A-03D A41889 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41889_1_lane_dupsFlagged.bam	SRR1385869	@dbgap@:reads/SRP012000/SRS635576/SRX593395/SRR1385869/SRR1385869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANTNA-09A-03D_TARGET-20-PANTNA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-03D	DNA	EFO	SRS635576	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTNA-09A-03D A41889 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41889	SRX593395	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANTNA-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANTNA-09A-03D A41889 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41889_1_lane_dupsFlagged.bam	SRR1385869	@dbgap@:reads/SRP012000/SRS635576/SRX593395/SRR1385869/SRR1385869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANTNA-09A-03D_TARGET-20-PANTNA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-01D	DNA	EFO	SRS637458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTNA-14A-01D A42949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42949	SRX597875	"Specific Capture analysis of normal sample TARGET-20-PANTNA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PANTNA-14A-01D A42949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42949_1_lane_dupsFlagged.bam	SRR1395156	@dbgap@:reads/SRP012000/SRS637458/SRX597875/SRR1395156/SRR1395156.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANTNA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANTNA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-01D	DNA	EFO	SRS637458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTNA-14A-01D A42949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42949	SRX597875	"Specific Capture analysis of normal sample TARGET-20-PANTNA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PANTNA-14A-01D A42949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42949_1_lane_dupsFlagged.bam	SRR1395156	@dbgap@:reads/SRP012000/SRS637458/SRX597875/SRR1395156/SRR1395156.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANTNA-04A-01D_TARGET-20-PANTNA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-01D	DNA	EFO	SRS637458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTNA-14A-01D A42949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42949	SRX597875	"Specific Capture analysis of normal sample TARGET-20-PANTNA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PANTNA-14A-01D A42949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42949_1_lane_dupsFlagged.bam	SRR1395156	@dbgap@:reads/SRP012000/SRS637458/SRX597875/SRR1395156/SRR1395156.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANTNA-04A-01D_TARGET-20-PANTNA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-01D	DNA	EFO	SRS637458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTNA-14A-01D A42949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42949	SRX597875	"Specific Capture analysis of normal sample TARGET-20-PANTNA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PANTNA-14A-01D A42949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42949_1_lane_dupsFlagged.bam	SRR1395156	@dbgap@:reads/SRP012000/SRS637458/SRX597875/SRR1395156/SRR1395156.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANTNA-09A-03D_TARGET-20-PANTNA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-14A-01D	DNA	EFO	SRS637458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTNA-14A-01D A42949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42949	SRX597875	"Specific Capture analysis of normal sample TARGET-20-PANTNA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PANTNA-14A-01D A42949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42949_1_lane_dupsFlagged.bam	SRR1395156	@dbgap@:reads/SRP012000/SRS637458/SRX597875/SRR1395156/SRR1395156.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANTNA-09A-03D_TARGET-20-PANTNA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-03D	DNA	EFO	SRS301045	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTPW-09A-03D A41879 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41879	SRX593337	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANTPW-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANTPW-09A-03D A41879 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41879_1_lane_dupsFlagged.bam	SRR1385829	@dbgap@:reads/SRP012000/SRS301045/SRX593337/SRR1385829/SRR1385829.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANTPW-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANTPW-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-03D	DNA	EFO	SRS301045	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTPW-09A-03D A41879 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41879	SRX593337	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANTPW-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANTPW-09A-03D A41879 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41879_1_lane_dupsFlagged.bam	SRR1385829	@dbgap@:reads/SRP012000/SRS301045/SRX593337/SRR1385829/SRR1385829.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANTPW-09A-03D_TARGET-20-PANTPW-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-03D	DNA	EFO	SRS301045	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTPW-09A-03D A41879 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41879	SRX593337	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANTPW-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANTPW-09A-03D A41879 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41879_1_lane_dupsFlagged.bam	SRR1385829	@dbgap@:reads/SRP012000/SRS301045/SRX593337/SRR1385829/SRR1385829.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANTPW-09A-03D_TARGET-20-PANTPW-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-14A-03D	DNA	EFO	SRS635886	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTPW-14A-03D A42464 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42464	SRX593847	"Specific Capture analysis of normal sample TARGET-20-PANTPW-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PANTPW-14A-03D A42464 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42464_1_lane_dupsFlagged.bam	SRR1386327	@dbgap@:reads/SRP012000/SRS635886/SRX593847/SRR1386327/SRR1386327.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANTPW-14A-03D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANTPW-14A-03D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-14A-03D	DNA	EFO	SRS635886	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTPW-14A-03D A42464 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42464	SRX593847	"Specific Capture analysis of normal sample TARGET-20-PANTPW-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PANTPW-14A-03D A42464 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42464_1_lane_dupsFlagged.bam	SRR1386327	@dbgap@:reads/SRP012000/SRS635886/SRX593847/SRR1386327/SRR1386327.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANTPW-09A-03D_TARGET-20-PANTPW-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-14A-03D	DNA	EFO	SRS635886	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTPW-14A-03D A42464 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42464	SRX593847	"Specific Capture analysis of normal sample TARGET-20-PANTPW-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PANTPW-14A-03D A42464 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42464_1_lane_dupsFlagged.bam	SRR1386327	@dbgap@:reads/SRP012000/SRS635886/SRX593847/SRR1386327/SRR1386327.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANTPW-09A-03D_TARGET-20-PANTPW-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01D	DNA	EFO	SRS118045	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUTB-09A-01D A41880 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41880	SRX593324	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANUTB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANUTB-09A-01D A41880 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41880_1_lane_dupsFlagged.bam	SRR1385846	@dbgap@:reads/SRP012000/SRS118045/SRX593324/SRR1385846/SRR1385846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANUTB-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANUTB-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01D	DNA	EFO	SRS118045	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUTB-09A-01D A41880 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41880	SRX593324	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANUTB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANUTB-09A-01D A41880 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41880_1_lane_dupsFlagged.bam	SRR1385846	@dbgap@:reads/SRP012000/SRS118045/SRX593324/SRR1385846/SRR1385846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANUTB-09A-01D_TARGET-20-PANUTB-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01D	DNA	EFO	SRS118045	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUTB-09A-01D A41880 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41880	SRX593324	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANUTB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANUTB-09A-01D A41880 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41880_1_lane_dupsFlagged.bam	SRR1385846	@dbgap@:reads/SRP012000/SRS118045/SRX593324/SRR1385846/SRR1385846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANUTB-09A-01D_TARGET-20-PANUTB-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-14A-02D	DNA	EFO	SRS637403	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUTB-14A-02D A42773 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42773	SRX597810	"Specific Capture analysis of normal sample TARGET-20-PANUTB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PANUTB-14A-02D A42773 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42773_1_lane_dupsFlagged.bam	SRR1395100	@dbgap@:reads/SRP012000/SRS637403/SRX597810/SRR1395100/SRR1395100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANUTB-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANUTB-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-14A-02D	DNA	EFO	SRS637403	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUTB-14A-02D A42773 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42773	SRX597810	"Specific Capture analysis of normal sample TARGET-20-PANUTB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PANUTB-14A-02D A42773 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42773_1_lane_dupsFlagged.bam	SRR1395100	@dbgap@:reads/SRP012000/SRS637403/SRX597810/SRR1395100/SRR1395100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANUTB-09A-01D_TARGET-20-PANUTB-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-14A-02D	DNA	EFO	SRS637403	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUTB-14A-02D A42773 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42773	SRX597810	"Specific Capture analysis of normal sample TARGET-20-PANUTB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PANUTB-14A-02D A42773 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42773_1_lane_dupsFlagged.bam	SRR1395100	@dbgap@:reads/SRP012000/SRS637403/SRX597810/SRR1395100/SRR1395100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANUTB-09A-01D_TARGET-20-PANUTB-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-03D	DNA	EFO	SRS301047	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUUA-09A-03D A41864 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41864	SRX593355	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANUUA-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANUUA-09A-03D A41864 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41864_1_lane_dupsFlagged.bam	SRR1385838	@dbgap@:reads/SRP012000/SRS301047/SRX593355/SRR1385838/SRR1385838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANUUA-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANUUA-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-03D	DNA	EFO	SRS301047	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUUA-09A-03D A41864 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41864	SRX593355	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANUUA-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANUUA-09A-03D A41864 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41864_1_lane_dupsFlagged.bam	SRR1385838	@dbgap@:reads/SRP012000/SRS301047/SRX593355/SRR1385838/SRR1385838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANUUA-09A-03D_TARGET-20-PANUUA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-03D	DNA	EFO	SRS301047	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUUA-09A-03D A41864 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41864	SRX593355	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANUUA-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANUUA-09A-03D A41864 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41864_1_lane_dupsFlagged.bam	SRR1385838	@dbgap@:reads/SRP012000/SRS301047/SRX593355/SRR1385838/SRR1385838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANUUA-09A-03D_TARGET-20-PANUUA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-14A-01D	DNA	EFO	SRS301048	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUUA-14A-01D A41533 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41533	SRX590834	"Specific Capture analysis of normal sample TARGET-20-PANUUA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANUUA-14A-01D A41533 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41533_1_lane_dupsFlagged.bam	SRR1379846	@dbgap@:reads/SRP012000/SRS301048/SRX590834/SRR1379846/SRR1379846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANUUA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANUUA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-14A-01D	DNA	EFO	SRS301048	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUUA-14A-01D A41533 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41533	SRX590834	"Specific Capture analysis of normal sample TARGET-20-PANUUA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANUUA-14A-01D A41533 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41533_1_lane_dupsFlagged.bam	SRR1379846	@dbgap@:reads/SRP012000/SRS301048/SRX590834/SRR1379846/SRR1379846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANUUA-09A-03D_TARGET-20-PANUUA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-14A-01D	DNA	EFO	SRS301048	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUUA-14A-01D A41533 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41533	SRX590834	"Specific Capture analysis of normal sample TARGET-20-PANUUA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANUUA-14A-01D A41533 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41533_1_lane_dupsFlagged.bam	SRR1379846	@dbgap@:reads/SRP012000/SRS301048/SRX590834/SRR1379846/SRR1379846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANUUA-09A-03D_TARGET-20-PANUUA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02D	DNA	EFO	SRS301049	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGE-09A-02D A41861 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41861	SRX593363	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANVGE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANVGE-09A-02D A41861 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41861_1_lane_dupsFlagged.bam	SRR1385791	@dbgap@:reads/SRP012000/SRS301049/SRX593363/SRR1385791/SRR1385791.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANVGE-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANVGE-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02D	DNA	EFO	SRS301049	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGE-09A-02D A41861 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41861	SRX593363	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANVGE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANVGE-09A-02D A41861 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41861_1_lane_dupsFlagged.bam	SRR1385791	@dbgap@:reads/SRP012000/SRS301049/SRX593363/SRR1385791/SRR1385791.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANVGE-09A-02D_TARGET-20-PANVGE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02D	DNA	EFO	SRS301049	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGE-09A-02D A41861 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41861	SRX593363	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANVGE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANVGE-09A-02D A41861 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41861_1_lane_dupsFlagged.bam	SRR1385791	@dbgap@:reads/SRP012000/SRS301049/SRX593363/SRR1385791/SRR1385791.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANVGE-09A-02D_TARGET-20-PANVGE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-14A-01D	DNA	EFO	SRS301050	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGE-14A-01D A42356 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42356	SRX593622	"Specific Capture analysis of normal sample TARGET-20-PANVGE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANVGE-14A-01D A42356 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42356_1_lane_dupsFlagged.bam	SRR1386050	@dbgap@:reads/SRP012000/SRS301050/SRX593622/SRR1386050/SRR1386050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANVGE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANVGE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-14A-01D	DNA	EFO	SRS301050	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGE-14A-01D A42356 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42356	SRX593622	"Specific Capture analysis of normal sample TARGET-20-PANVGE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANVGE-14A-01D A42356 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42356_1_lane_dupsFlagged.bam	SRR1386050	@dbgap@:reads/SRP012000/SRS301050/SRX593622/SRR1386050/SRR1386050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANVGE-09A-02D_TARGET-20-PANVGE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-14A-01D	DNA	EFO	SRS301050	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGE-14A-01D A42356 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42356	SRX593622	"Specific Capture analysis of normal sample TARGET-20-PANVGE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANVGE-14A-01D A42356 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42356_1_lane_dupsFlagged.bam	SRR1386050	@dbgap@:reads/SRP012000/SRS301050/SRX593622/SRR1386050/SRR1386050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANVGE-09A-02D_TARGET-20-PANVGE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-03A-01D	DNA	EFO	SRS160290	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGP-03A-01D A41895 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41895	SRX593441	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANVGP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANVGP-03A-01D A41895 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41895_1_lane_dupsFlagged.bam	SRR1385889	@dbgap@:reads/SRP012000/SRS160290/SRX593441/SRR1385889/SRR1385889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANVGP-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANVGP-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-03A-01D	DNA	EFO	SRS160290	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGP-03A-01D A41895 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41895	SRX593441	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANVGP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANVGP-03A-01D A41895 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41895_1_lane_dupsFlagged.bam	SRR1385889	@dbgap@:reads/SRP012000/SRS160290/SRX593441/SRR1385889/SRR1385889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANVGP-03A-01D_TARGET-20-PANVGP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-03A-01D	DNA	EFO	SRS160290	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGP-03A-01D A41895 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41895	SRX593441	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANVGP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANVGP-03A-01D A41895 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41895_1_lane_dupsFlagged.bam	SRR1385889	@dbgap@:reads/SRP012000/SRS160290/SRX593441/SRR1385889/SRR1385889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANVGP-03A-01D_TARGET-20-PANVGP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-02D	DNA	EFO	SRS637518	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGP-04A-02D A42707 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42707	SRX597954	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANVGP-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PANVGP-04A-02D A42707 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42707_1_lane_dupsFlagged.bam	SRR1395251	@dbgap@:reads/SRP012000/SRS637518/SRX597954/SRR1395251/SRR1395251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANVGP-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANVGP-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-02D	DNA	EFO	SRS637518	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGP-04A-02D A42707 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42707	SRX597954	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANVGP-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PANVGP-04A-02D A42707 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42707_1_lane_dupsFlagged.bam	SRR1395251	@dbgap@:reads/SRP012000/SRS637518/SRX597954/SRR1395251/SRR1395251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANVGP-04A-02D_TARGET-20-PANVGP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-02D	DNA	EFO	SRS637518	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGP-04A-02D A42707 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42707	SRX597954	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANVGP-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PANVGP-04A-02D A42707 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42707_1_lane_dupsFlagged.bam	SRR1395251	@dbgap@:reads/SRP012000/SRS637518/SRX597954/SRR1395251/SRR1395251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANVGP-04A-02D_TARGET-20-PANVGP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-01D	DNA	EFO	SRS160292	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGP-14A-01D A42636 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42636	SRX593989	"Specific Capture analysis of normal sample TARGET-20-PANVGP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANVGP-14A-01D A42636 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42636_1_lane_dupsFlagged.bam	SRR1386413	@dbgap@:reads/SRP012000/SRS160292/SRX593989/SRR1386413/SRR1386413.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANVGP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANVGP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-01D	DNA	EFO	SRS160292	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGP-14A-01D A42636 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42636	SRX593989	"Specific Capture analysis of normal sample TARGET-20-PANVGP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANVGP-14A-01D A42636 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42636_1_lane_dupsFlagged.bam	SRR1386413	@dbgap@:reads/SRP012000/SRS160292/SRX593989/SRR1386413/SRR1386413.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANVGP-03A-01D_TARGET-20-PANVGP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-01D	DNA	EFO	SRS160292	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGP-14A-01D A42636 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42636	SRX593989	"Specific Capture analysis of normal sample TARGET-20-PANVGP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANVGP-14A-01D A42636 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42636_1_lane_dupsFlagged.bam	SRR1386413	@dbgap@:reads/SRP012000/SRS160292/SRX593989/SRR1386413/SRR1386413.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANVGP-03A-01D_TARGET-20-PANVGP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-01D	DNA	EFO	SRS160292	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGP-14A-01D A42636 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42636	SRX593989	"Specific Capture analysis of normal sample TARGET-20-PANVGP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANVGP-14A-01D A42636 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42636_1_lane_dupsFlagged.bam	SRR1386413	@dbgap@:reads/SRP012000/SRS160292/SRX593989/SRR1386413/SRR1386413.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANVGP-04A-02D_TARGET-20-PANVGP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-01D	DNA	EFO	SRS160292	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGP-14A-01D A42636 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42636	SRX593989	"Specific Capture analysis of normal sample TARGET-20-PANVGP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANVGP-14A-01D A42636 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42636_1_lane_dupsFlagged.bam	SRR1386413	@dbgap@:reads/SRP012000/SRS160292/SRX593989/SRR1386413/SRR1386413.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANVGP-04A-02D_TARGET-20-PANVGP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANVUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVUF-09A-02D	DNA	EFO	SRS635618	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVUF-09A-02D A41902 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41902	SRX593438	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANVUF-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANVUF-09A-02D A41902 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41902_1_lane_dupsFlagged.bam	SRR1385887	@dbgap@:reads/SRP012000/SRS635618/SRX593438/SRR1385887/SRR1385887.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANVUF-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANVUF-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02D	DNA	EFO	SRS301053	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANWHP-09A-02D A41881 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41881	SRX593317	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANWHP-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANWHP-09A-02D A41881 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41881_1_lane_dupsFlagged.bam	SRR1385854	@dbgap@:reads/SRP012000/SRS301053/SRX593317/SRR1385854/SRR1385854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANWHP-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANWHP-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02D	DNA	EFO	SRS301053	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANWHP-09A-02D A41881 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41881	SRX593317	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANWHP-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANWHP-09A-02D A41881 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41881_1_lane_dupsFlagged.bam	SRR1385854	@dbgap@:reads/SRP012000/SRS301053/SRX593317/SRR1385854/SRR1385854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANWHP-09A-02D_TARGET-20-PANWHP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02D	DNA	EFO	SRS301053	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANWHP-09A-02D A41881 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41881	SRX593317	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANWHP-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANWHP-09A-02D A41881 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41881_1_lane_dupsFlagged.bam	SRR1385854	@dbgap@:reads/SRP012000/SRS301053/SRX593317/SRR1385854/SRR1385854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANWHP-09A-02D_TARGET-20-PANWHP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-14A-01D	DNA	EFO	SRS301054	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANWHP-14A-01D A42557 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42557	SRX593967	"Specific Capture analysis of normal sample TARGET-20-PANWHP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANWHP-14A-01D A42557 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42557_1_lane_dupsFlagged.bam	SRR1386432	@dbgap@:reads/SRP012000/SRS301054/SRX593967/SRR1386432/SRR1386432.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANWHP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANWHP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-14A-01D	DNA	EFO	SRS301054	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANWHP-14A-01D A42557 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42557	SRX593967	"Specific Capture analysis of normal sample TARGET-20-PANWHP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANWHP-14A-01D A42557 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42557_1_lane_dupsFlagged.bam	SRR1386432	@dbgap@:reads/SRP012000/SRS301054/SRX593967/SRR1386432/SRR1386432.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANWHP-09A-02D_TARGET-20-PANWHP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-14A-01D	DNA	EFO	SRS301054	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANWHP-14A-01D A42557 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42557	SRX593967	"Specific Capture analysis of normal sample TARGET-20-PANWHP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PANWHP-14A-01D A42557 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42557_1_lane_dupsFlagged.bam	SRR1386432	@dbgap@:reads/SRP012000/SRS301054/SRX593967/SRR1386432/SRR1386432.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANWHP-09A-02D_TARGET-20-PANWHP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYCG-04A-01D	DNA	EFO	SRS270670	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYCG-04A-01D A42270 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42270	SRX597686	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANYCG-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PANYCG-04A-01D A42270 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42270_1_lane_dupsFlagged.bam	SRR1395044	@dbgap@:reads/SRP012000/SRS270670/SRX597686/SRR1395044/SRR1395044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANYCG-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANYCG-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-02D	DNA	EFO	SRS301055	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYGP-09A-02D A41882 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41882	SRX593328	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANYGP-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANYGP-09A-02D A41882 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41882_1_lane_dupsFlagged.bam	SRR1385825	@dbgap@:reads/SRP012000/SRS301055/SRX593328/SRR1385825/SRR1385825.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANYGP-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANYGP-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-09A-01D	DNA	EFO	SRS301057	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYNR-09A-01D A41837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41837	SRX593333	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANYNR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANYNR-09A-01D A41837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41837_1_lane_dupsFlagged.bam	SRR1385781	@dbgap@:reads/SRP012000/SRS301057/SRX593333/SRR1385781/SRR1385781.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANYNR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANYNR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-09A-01D	DNA	EFO	SRS301057	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYNR-09A-01D A41837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41837	SRX593333	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANYNR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANYNR-09A-01D A41837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41837_1_lane_dupsFlagged.bam	SRR1385781	@dbgap@:reads/SRP012000/SRS301057/SRX593333/SRR1385781/SRR1385781.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANYNR-09A-01D_TARGET-20-PANYNR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-09A-01D	DNA	EFO	SRS301057	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYNR-09A-01D A41837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41837	SRX593333	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANYNR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANYNR-09A-01D A41837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41837_1_lane_dupsFlagged.bam	SRR1385781	@dbgap@:reads/SRP012000/SRS301057/SRX593333/SRR1385781/SRR1385781.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANYNR-09A-01D_TARGET-20-PANYNR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-14A-01D	DNA	EFO	SRS301058	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYNR-14A-01D A42774 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42774	SRX597847	"Specific Capture analysis of normal sample TARGET-20-PANYNR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PANYNR-14A-01D A42774 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42774_1_lane_dupsFlagged.bam	SRR1395084	@dbgap@:reads/SRP012000/SRS301058/SRX597847/SRR1395084/SRR1395084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANYNR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANYNR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-14A-01D	DNA	EFO	SRS301058	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYNR-14A-01D A42774 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42774	SRX597847	"Specific Capture analysis of normal sample TARGET-20-PANYNR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PANYNR-14A-01D A42774 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42774_1_lane_dupsFlagged.bam	SRR1395084	@dbgap@:reads/SRP012000/SRS301058/SRX597847/SRR1395084/SRR1395084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANYNR-09A-01D_TARGET-20-PANYNR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-14A-01D	DNA	EFO	SRS301058	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYNR-14A-01D A42774 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42774	SRX597847	"Specific Capture analysis of normal sample TARGET-20-PANYNR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PANYNR-14A-01D A42774 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42774_1_lane_dupsFlagged.bam	SRR1395084	@dbgap@:reads/SRP012000/SRS301058/SRX597847/SRR1395084/SRR1395084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANYNR-09A-01D_TARGET-20-PANYNR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-03D	DNA	EFO	SRS635577	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYSN-03A-03D A41903 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41903	SRX593396	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANYSN-03A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANYSN-03A-03D A41903 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41903_1_lane_dupsFlagged.bam	SRR1385907	@dbgap@:reads/SRP012000/SRS635577/SRX593396/SRR1385907/SRR1385907.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANYSN-03A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANYSN-03A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-03D	DNA	EFO	SRS635577	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYSN-03A-03D A41903 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41903	SRX593396	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANYSN-03A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANYSN-03A-03D A41903 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41903_1_lane_dupsFlagged.bam	SRR1385907	@dbgap@:reads/SRP012000/SRS635577/SRX593396/SRR1385907/SRR1385907.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANYSN-03A-03D_TARGET-20-PANYSN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-03D	DNA	EFO	SRS635577	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYSN-03A-03D A41903 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41903	SRX593396	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANYSN-03A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PANYSN-03A-03D A41903 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41903_1_lane_dupsFlagged.bam	SRR1385907	@dbgap@:reads/SRP012000/SRS635577/SRX593396/SRR1385907/SRR1385907.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANYSN-03A-03D_TARGET-20-PANYSN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-14A-01D	DNA	EFO	SRS301060	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYSN-14A-01D A42775 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42775	SRX597846	"Specific Capture analysis of normal sample TARGET-20-PANYSN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PANYSN-14A-01D A42775 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42775_1_lane_dupsFlagged.bam	SRR1395095	@dbgap@:reads/SRP012000/SRS301060/SRX597846/SRR1395095/SRR1395095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANYSN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANYSN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-14A-01D	DNA	EFO	SRS301060	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYSN-14A-01D A42775 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42775	SRX597846	"Specific Capture analysis of normal sample TARGET-20-PANYSN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PANYSN-14A-01D A42775 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42775_1_lane_dupsFlagged.bam	SRR1395095	@dbgap@:reads/SRP012000/SRS301060/SRX597846/SRR1395095/SRR1395095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANYSN-03A-03D_TARGET-20-PANYSN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-14A-01D	DNA	EFO	SRS301060	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYSN-14A-01D A42775 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42775	SRX597846	"Specific Capture analysis of normal sample TARGET-20-PANYSN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PANYSN-14A-01D A42775 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42775_1_lane_dupsFlagged.bam	SRR1395095	@dbgap@:reads/SRP012000/SRS301060/SRX597846/SRR1395095/SRR1395095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANYSN-03A-03D_TARGET-20-PANYSN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02D	DNA	EFO	SRS494300	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANZKA-09A-02D A41883 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41883	SRX593384	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANZKA-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANZKA-09A-02D A41883 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41883_1_lane_dupsFlagged.bam	SRR1385819	@dbgap@:reads/SRP012000/SRS494300/SRX593384/SRR1385819/SRR1385819.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANZKA-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANZKA-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-03D	DNA	EFO	SRS301061	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANZWB-09A-03D A41884 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41884	SRX593383	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANZWB-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANZWB-09A-03D A41884 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41884_1_lane_dupsFlagged.bam	SRR1385845	@dbgap@:reads/SRP012000/SRS301061/SRX593383/SRR1385845/SRR1385845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANZWB-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANZWB-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-03D	DNA	EFO	SRS301061	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANZWB-09A-03D A41884 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41884	SRX593383	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANZWB-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANZWB-09A-03D A41884 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41884_1_lane_dupsFlagged.bam	SRR1385845	@dbgap@:reads/SRP012000/SRS301061/SRX593383/SRR1385845/SRR1385845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANZWB-09A-03D_TARGET-20-PANZWB-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-03D	DNA	EFO	SRS301061	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANZWB-09A-03D A41884 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41884	SRX593383	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PANZWB-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PANZWB-09A-03D A41884 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41884_1_lane_dupsFlagged.bam	SRR1385845	@dbgap@:reads/SRP012000/SRS301061/SRX593383/SRR1385845/SRR1385845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANZWB-09A-03D_TARGET-20-PANZWB-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-14A-02D	DNA	EFO	SRS301062	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANZWB-14A-02D A41532 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41532	SRX590864	"Specific Capture analysis of normal sample TARGET-20-PANZWB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANZWB-14A-02D A41532 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41532_1_lane_dupsFlagged.bam	SRR1379865	@dbgap@:reads/SRP012000/SRS301062/SRX590864/SRR1379865/SRR1379865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PANZWB-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PANZWB-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-14A-02D	DNA	EFO	SRS301062	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANZWB-14A-02D A41532 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41532	SRX590864	"Specific Capture analysis of normal sample TARGET-20-PANZWB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANZWB-14A-02D A41532 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41532_1_lane_dupsFlagged.bam	SRR1379865	@dbgap@:reads/SRP012000/SRS301062/SRX590864/SRR1379865/SRR1379865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANZWB-09A-03D_TARGET-20-PANZWB-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-14A-02D	DNA	EFO	SRS301062	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANZWB-14A-02D A41532 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41532	SRX590864	"Specific Capture analysis of normal sample TARGET-20-PANZWB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PANZWB-14A-02D A41532 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41532_1_lane_dupsFlagged.bam	SRR1379865	@dbgap@:reads/SRP012000/SRS301062/SRX590864/SRR1379865/SRR1379865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PANZWB-09A-03D_TARGET-20-PANZWB-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02D	DNA	EFO	SRS301063	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPAWN-09A-02D A41885 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41885	SRX593376	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPAWN-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAPAWN-09A-02D A41885 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41885_1_lane_dupsFlagged.bam	SRR1385830	@dbgap@:reads/SRP012000/SRS301063/SRX593376/SRR1385830/SRR1385830.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPAWN-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPAWN-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02D	DNA	EFO	SRS301063	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPAWN-09A-02D A41885 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41885	SRX593376	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPAWN-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAPAWN-09A-02D A41885 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41885_1_lane_dupsFlagged.bam	SRR1385830	@dbgap@:reads/SRP012000/SRS301063/SRX593376/SRR1385830/SRR1385830.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPAWN-09A-02D_TARGET-20-PAPAWN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02D	DNA	EFO	SRS301063	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPAWN-09A-02D A41885 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41885	SRX593376	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPAWN-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PAPAWN-09A-02D A41885 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41885_1_lane_dupsFlagged.bam	SRR1385830	@dbgap@:reads/SRP012000/SRS301063/SRX593376/SRR1385830/SRR1385830.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPAWN-09A-02D_TARGET-20-PAPAWN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-14A-01D	DNA	EFO	SRS301064	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPAWN-14A-01D A42357 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42357	SRX593613	"Specific Capture analysis of normal sample TARGET-20-PAPAWN-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPAWN-14A-01D A42357 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42357_1_lane_dupsFlagged.bam	SRR1386056	@dbgap@:reads/SRP012000/SRS301064/SRX593613/SRR1386056/SRR1386056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPAWN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPAWN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-14A-01D	DNA	EFO	SRS301064	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPAWN-14A-01D A42357 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42357	SRX593613	"Specific Capture analysis of normal sample TARGET-20-PAPAWN-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPAWN-14A-01D A42357 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42357_1_lane_dupsFlagged.bam	SRR1386056	@dbgap@:reads/SRP012000/SRS301064/SRX593613/SRR1386056/SRR1386056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPAWN-09A-02D_TARGET-20-PAPAWN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-14A-01D	DNA	EFO	SRS301064	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPAWN-14A-01D A42357 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42357	SRX593613	"Specific Capture analysis of normal sample TARGET-20-PAPAWN-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPAWN-14A-01D A42357 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42357_1_lane_dupsFlagged.bam	SRR1386056	@dbgap@:reads/SRP012000/SRS301064/SRX593613/SRR1386056/SRR1386056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPAWN-09A-02D_TARGET-20-PAPAWN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPBEJ-04A-01D A42268 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42268	SRX597681	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPBEJ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPBEJ-04A-01D A42268 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42268_1_lane_dupsFlagged.bam	SRR1394996	@dbgap@:reads/SRP012000/SRS270673/SRX597681/SRR1394996/SRR1394996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPBEJ-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPBEJ-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPBEJ-04A-01D A42268 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42268	SRX597681	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPBEJ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPBEJ-04A-01D A42268 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42268_1_lane_dupsFlagged.bam	SRR1394996	@dbgap@:reads/SRP012000/SRS270673/SRX597681/SRR1394996/SRR1394996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPBEJ-04A-01D_TARGET-20-PAPBEJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-04A-01D	DNA	EFO	SRS270673	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPBEJ-04A-01D A42268 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42268	SRX597681	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPBEJ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPBEJ-04A-01D A42268 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42268_1_lane_dupsFlagged.bam	SRR1394996	@dbgap@:reads/SRP012000/SRS270673/SRX597681/SRR1394996/SRR1394996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPBEJ-04A-01D_TARGET-20-PAPBEJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-01D	DNA	EFO	SRS635595	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPBEJ-09A-01D A41896 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41896	SRX593414	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPBEJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAPBEJ-09A-01D A41896 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41896_1_lane_dupsFlagged.bam	SRR1385868	@dbgap@:reads/SRP012000/SRS635595/SRX593414/SRR1385868/SRR1385868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPBEJ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPBEJ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-01D	DNA	EFO	SRS635595	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPBEJ-09A-01D A41896 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41896	SRX593414	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPBEJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAPBEJ-09A-01D A41896 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41896_1_lane_dupsFlagged.bam	SRR1385868	@dbgap@:reads/SRP012000/SRS635595/SRX593414/SRR1385868/SRR1385868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPBEJ-09A-01D_TARGET-20-PAPBEJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-01D	DNA	EFO	SRS635595	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPBEJ-09A-01D A41896 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41896	SRX593414	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPBEJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAPBEJ-09A-01D A41896 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41896_1_lane_dupsFlagged.bam	SRR1385868	@dbgap@:reads/SRP012000/SRS635595/SRX593414/SRR1385868/SRR1385868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPBEJ-09A-01D_TARGET-20-PAPBEJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPBEJ-14A-01D A42564 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42564	SRX593954	"Specific Capture analysis of normal sample TARGET-20-PAPBEJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PAPBEJ-14A-01D A42564 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42564_1_lane_dupsFlagged.bam	SRR1386464	@dbgap@:reads/SRP012000/SRS270674/SRX593954/SRR1386464/SRR1386464.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPBEJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPBEJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPBEJ-14A-01D A42564 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42564	SRX593954	"Specific Capture analysis of normal sample TARGET-20-PAPBEJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PAPBEJ-14A-01D A42564 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42564_1_lane_dupsFlagged.bam	SRR1386464	@dbgap@:reads/SRP012000/SRS270674/SRX593954/SRR1386464/SRR1386464.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPBEJ-04A-01D_TARGET-20-PAPBEJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPBEJ-14A-01D A42564 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42564	SRX593954	"Specific Capture analysis of normal sample TARGET-20-PAPBEJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PAPBEJ-14A-01D A42564 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42564_1_lane_dupsFlagged.bam	SRR1386464	@dbgap@:reads/SRP012000/SRS270674/SRX593954/SRR1386464/SRR1386464.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPBEJ-04A-01D_TARGET-20-PAPBEJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPBEJ-14A-01D A42564 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42564	SRX593954	"Specific Capture analysis of normal sample TARGET-20-PAPBEJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PAPBEJ-14A-01D A42564 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42564_1_lane_dupsFlagged.bam	SRR1386464	@dbgap@:reads/SRP012000/SRS270674/SRX593954/SRR1386464/SRR1386464.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPBEJ-09A-01D_TARGET-20-PAPBEJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-14A-01D	DNA	EFO	SRS270674	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPBEJ-14A-01D A42564 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42564	SRX593954	"Specific Capture analysis of normal sample TARGET-20-PAPBEJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PAPBEJ-14A-01D A42564 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42564_1_lane_dupsFlagged.bam	SRR1386464	@dbgap@:reads/SRP012000/SRS270674/SRX593954/SRR1386464/SRR1386464.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPBEJ-09A-01D_TARGET-20-PAPBEJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPRND	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPRND-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPRND-09A-01D	DNA	EFO	SRS629154	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPRND-09A-01D A33271 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33271	SRX575209	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPRND-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPRND-09A-01D A33271 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33271_1_lane_dupsFlagged.bam	SRR1346421	@dbgap@:reads/SRP012000/SRS629154/SRX575209/SRR1346421/SRR1346421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPRND-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPRND-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPRND	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPRND-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPRND-09A-01D	DNA	EFO	SRS629154	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPRND-09A-01D A33271 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33271	SRX575209	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPRND-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPRND-09A-01D A33271 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33271_1_lane_dupsFlagged.bam	SRR1346421	@dbgap@:reads/SRP012000/SRS629154/SRX575209/SRR1346421/SRR1346421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPRND-09A-01D_TARGET-20-PAPRND-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPRND	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPRND-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPRND-09A-01D	DNA	EFO	SRS629154	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPRND-09A-01D A33271 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33271	SRX575209	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPRND-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPRND-09A-01D A33271 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33271_1_lane_dupsFlagged.bam	SRR1346421	@dbgap@:reads/SRP012000/SRS629154/SRX575209/SRR1346421/SRR1346421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPRND-09A-01D_TARGET-20-PAPRND-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPRND	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPRND-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPRND-14A-01D	DNA	EFO	SRS634715	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPRND-14A-01D A41538 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41538	SRX590823	"Specific Capture analysis of normal sample TARGET-20-PAPRND-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPRND-14A-01D A41538 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41538_1_lane_dupsFlagged.bam	SRR1379797	@dbgap@:reads/SRP012000/SRS634715/SRX590823/SRR1379797/SRR1379797.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPRND-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPRND-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPRND	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPRND-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPRND-14A-01D	DNA	EFO	SRS634715	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPRND-14A-01D A41538 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41538	SRX590823	"Specific Capture analysis of normal sample TARGET-20-PAPRND-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPRND-14A-01D A41538 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41538_1_lane_dupsFlagged.bam	SRR1379797	@dbgap@:reads/SRP012000/SRS634715/SRX590823/SRR1379797/SRR1379797.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPRND-09A-01D_TARGET-20-PAPRND-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPRND	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPRND-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPRND-14A-01D	DNA	EFO	SRS634715	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPRND-14A-01D A41538 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41538	SRX590823	"Specific Capture analysis of normal sample TARGET-20-PAPRND-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPRND-14A-01D A41538 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41538_1_lane_dupsFlagged.bam	SRR1379797	@dbgap@:reads/SRP012000/SRS634715/SRX590823/SRR1379797/SRR1379797.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPRND-09A-01D_TARGET-20-PAPRND-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPSCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPSCM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPSCM-04A-01D	DNA	EFO	SRS637553	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPSCM-04A-01D A42753 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42753	SRX597993	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPSCM-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PAPSCM-04A-01D A42753 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42753_1_lane_dupsFlagged.bam	SRR1395268	@dbgap@:reads/SRP012000/SRS637553/SRX597993/SRR1395268/SRR1395268.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPSCM-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPSCM-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPSCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPSCM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPSCM-09A-01D	DNA	EFO	SRS633929	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPSCM-09A-01D A41434 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41434	SRX588534	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPSCM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPSCM-09A-01D A41434 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41434_1_lane_dupsFlagged.bam	SRR1374881	@dbgap@:reads/SRP012000/SRS633929/SRX588534/SRR1374881/SRR1374881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPSCM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPSCM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPUEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPUEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUEM-03A-01D	DNA	EFO	SRS633940	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUEM-03A-01D A41435 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41435	SRX588546	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPUEM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPUEM-03A-01D A41435 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41435_1_lane_dupsFlagged.bam	SRR1374892	@dbgap@:reads/SRP012000/SRS633940/SRX588546/SRR1374892/SRR1374892.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPUEM-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPUEM-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPUNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPUNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUNR-09A-01D	DNA	EFO	SRS628714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUNR-09A-01D A32166 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32166	SRX574407	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPUNR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPUNR-09A-01D A32166 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32166_1_lane_dupsFlagged.bam	SRR1344858	@dbgap@:reads/SRP012000/SRS628714/SRX574407/SRR1344858/SRR1344858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPUNR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPUNR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPUNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPUNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUNR-09A-01D	DNA	EFO	SRS628714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUNR-09A-01D A32166 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32166	SRX574407	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPUNR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPUNR-09A-01D A32166 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32166_1_lane_dupsFlagged.bam	SRR1344858	@dbgap@:reads/SRP012000/SRS628714/SRX574407/SRR1344858/SRR1344858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPUNR-09A-01D_TARGET-20-PAPUNR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPUNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPUNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUNR-09A-01D	DNA	EFO	SRS628714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUNR-09A-01D A32166 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32166	SRX574407	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPUNR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPUNR-09A-01D A32166 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32166_1_lane_dupsFlagged.bam	SRR1344858	@dbgap@:reads/SRP012000/SRS628714/SRX574407/SRR1344858/SRR1344858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPUNR-09A-01D_TARGET-20-PAPUNR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPUNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPUNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUNR-14A-01D	DNA	EFO	SRS637498	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUNR-14A-01D A42883 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42883	SRX597929	"Specific Capture analysis of normal sample TARGET-20-PAPUNR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPUNR-14A-01D A42883 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42883_1_lane_dupsFlagged.bam	SRR1395139	@dbgap@:reads/SRP012000/SRS637498/SRX597929/SRR1395139/SRR1395139.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPUNR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPUNR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPUNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPUNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUNR-14A-01D	DNA	EFO	SRS637498	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUNR-14A-01D A42883 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42883	SRX597929	"Specific Capture analysis of normal sample TARGET-20-PAPUNR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPUNR-14A-01D A42883 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42883_1_lane_dupsFlagged.bam	SRR1395139	@dbgap@:reads/SRP012000/SRS637498/SRX597929/SRR1395139/SRR1395139.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPUNR-09A-01D_TARGET-20-PAPUNR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPUNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPUNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUNR-14A-01D	DNA	EFO	SRS637498	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUNR-14A-01D A42883 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42883	SRX597929	"Specific Capture analysis of normal sample TARGET-20-PAPUNR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPUNR-14A-01D A42883 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42883_1_lane_dupsFlagged.bam	SRR1395139	@dbgap@:reads/SRP012000/SRS637498/SRX597929/SRR1395139/SRR1395139.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPUNR-09A-01D_TARGET-20-PAPUNR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPUPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPUPC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUPC-09A-01D	DNA	EFO	SRS633967	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUPC-09A-01D A41436 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41436	SRX588574	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPUPC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPUPC-09A-01D A41436 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41436_1_lane_dupsFlagged.bam	SRR1374872	@dbgap@:reads/SRP012000/SRS633967/SRX588574/SRR1374872/SRR1374872.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPUPC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPUPC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPUSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPUSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUSR-09A-01D	DNA	EFO	SRS629167	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUSR-09A-01D A33355 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33355	SRX575223	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPUSR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPUSR-09A-01D A33355 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33355_1_lane_dupsFlagged.bam	SRR1346423	@dbgap@:reads/SRP012000/SRS629167/SRX575223/SRR1346423/SRR1346423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPUSR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPUSR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPUSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPUSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUSR-09A-01D	DNA	EFO	SRS629167	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUSR-09A-01D A33355 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33355	SRX575223	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPUSR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPUSR-09A-01D A33355 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33355_1_lane_dupsFlagged.bam	SRR1346423	@dbgap@:reads/SRP012000/SRS629167/SRX575223/SRR1346423/SRR1346423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPUSR-09A-01D_TARGET-20-PAPUSR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPUSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPUSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUSR-09A-01D	DNA	EFO	SRS629167	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUSR-09A-01D A33355 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33355	SRX575223	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPUSR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPUSR-09A-01D A33355 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33355_1_lane_dupsFlagged.bam	SRR1346423	@dbgap@:reads/SRP012000/SRS629167/SRX575223/SRR1346423/SRR1346423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPUSR-09A-01D_TARGET-20-PAPUSR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPUSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPUSR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUSR-14A-01D	DNA	EFO	SRS636015	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUSR-14A-01D A42568 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42568	SRX593987	"Specific Capture analysis of normal sample TARGET-20-PAPUSR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPUSR-14A-01D A42568 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42568_1_lane_dupsFlagged.bam	SRR1386419	@dbgap@:reads/SRP012000/SRS636015/SRX593987/SRR1386419/SRR1386419.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPUSR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPUSR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPUSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPUSR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUSR-14A-01D	DNA	EFO	SRS636015	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUSR-14A-01D A42568 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42568	SRX593987	"Specific Capture analysis of normal sample TARGET-20-PAPUSR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPUSR-14A-01D A42568 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42568_1_lane_dupsFlagged.bam	SRR1386419	@dbgap@:reads/SRP012000/SRS636015/SRX593987/SRR1386419/SRR1386419.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPUSR-09A-01D_TARGET-20-PAPUSR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPUSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPUSR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUSR-14A-01D	DNA	EFO	SRS636015	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUSR-14A-01D A42568 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42568	SRX593987	"Specific Capture analysis of normal sample TARGET-20-PAPUSR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPUSR-14A-01D A42568 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42568_1_lane_dupsFlagged.bam	SRR1386419	@dbgap@:reads/SRP012000/SRS636015/SRX593987/SRR1386419/SRR1386419.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPUSR-09A-01D_TARGET-20-PAPUSR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPVBS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVBS-09A-01D	DNA	EFO	SRS635605	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVBS-09A-01D A41910 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41910	SRX593425	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVBS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAPVBS-09A-01D A41910 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41910_1_lane_dupsFlagged.bam	SRR1385895	@dbgap@:reads/SRP012000/SRS635605/SRX593425/SRR1385895/SRR1385895.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPVBS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPVBS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01D	DNA	EFO	SRS671233	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVCN-09A-01D A31275 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31275	SRX666436	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVCN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PAPVCN-09A-01D A31275 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31275_2_lanes_dupsFlagged.bam	SRR1532818	@dbgap@:reads/SRP012000/SRS671233/SRX666436/SRR1532818/SRR1532818.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPVCN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPVCN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01D	DNA	EFO	SRS671233	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVCN-09A-01D A31275 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31275	SRX666436	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVCN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PAPVCN-09A-01D A31275 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31275_2_lanes_dupsFlagged.bam	SRR1532818	@dbgap@:reads/SRP012000/SRS671233/SRX666436/SRR1532818/SRR1532818.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVCN-09A-01D_TARGET-20-PAPVCN-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01D	DNA	EFO	SRS671233	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVCN-09A-01D A31275 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31275	SRX666436	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVCN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PAPVCN-09A-01D A31275 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31275_2_lanes_dupsFlagged.bam	SRR1532818	@dbgap@:reads/SRP012000/SRS671233/SRX666436/SRR1532818/SRR1532818.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVCN-09A-01D_TARGET-20-PAPVCN-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-14A-02D	DNA	EFO	SRS270676	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVCN-14A-02D A42355 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42355	SRX593588	"Specific Capture analysis of normal sample TARGET-20-PAPVCN-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPVCN-14A-02D A42355 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42355_1_lane_dupsFlagged.bam	SRR1386072	@dbgap@:reads/SRP012000/SRS270676/SRX593588/SRR1386072/SRR1386072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPVCN-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPVCN-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-14A-02D	DNA	EFO	SRS270676	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVCN-14A-02D A42355 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42355	SRX593588	"Specific Capture analysis of normal sample TARGET-20-PAPVCN-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPVCN-14A-02D A42355 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42355_1_lane_dupsFlagged.bam	SRR1386072	@dbgap@:reads/SRP012000/SRS270676/SRX593588/SRR1386072/SRR1386072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVCN-09A-01D_TARGET-20-PAPVCN-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-14A-02D	DNA	EFO	SRS270676	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVCN-14A-02D A42355 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42355	SRX593588	"Specific Capture analysis of normal sample TARGET-20-PAPVCN-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPVCN-14A-02D A42355 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42355_1_lane_dupsFlagged.bam	SRR1386072	@dbgap@:reads/SRP012000/SRS270676/SRX593588/SRR1386072/SRR1386072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVCN-09A-01D_TARGET-20-PAPVCN-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-09A-01D	DNA	EFO	SRS628905	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVDV-09A-01D A32316 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32316	SRX574961	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVDV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PAPVDV-09A-01D A32316 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32316_1_lane_dupsFlagged.bam	SRR1346211	@dbgap@:reads/SRP012000/SRS628905/SRX574961/SRR1346211/SRR1346211.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPVDV-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPVDV-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-09A-01D	DNA	EFO	SRS628905	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVDV-09A-01D A32316 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32316	SRX574961	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVDV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PAPVDV-09A-01D A32316 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32316_1_lane_dupsFlagged.bam	SRR1346211	@dbgap@:reads/SRP012000/SRS628905/SRX574961/SRR1346211/SRR1346211.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVDV-09A-01D_TARGET-20-PAPVDV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-09A-01D	DNA	EFO	SRS628905	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVDV-09A-01D A32316 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32316	SRX574961	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVDV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PAPVDV-09A-01D A32316 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32316_1_lane_dupsFlagged.bam	SRR1346211	@dbgap@:reads/SRP012000/SRS628905/SRX574961/SRR1346211/SRR1346211.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVDV-09A-01D_TARGET-20-PAPVDV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-14A-01D	DNA	EFO	SRS301066	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVDV-14A-01D A42358 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42358	SRX593551	"Specific Capture analysis of normal sample TARGET-20-PAPVDV-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPVDV-14A-01D A42358 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42358_1_lane_dupsFlagged.bam	SRR1386080	@dbgap@:reads/SRP012000/SRS301066/SRX593551/SRR1386080/SRR1386080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPVDV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPVDV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-14A-01D	DNA	EFO	SRS301066	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVDV-14A-01D A42358 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42358	SRX593551	"Specific Capture analysis of normal sample TARGET-20-PAPVDV-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPVDV-14A-01D A42358 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42358_1_lane_dupsFlagged.bam	SRR1386080	@dbgap@:reads/SRP012000/SRS301066/SRX593551/SRR1386080/SRR1386080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVDV-09A-01D_TARGET-20-PAPVDV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-14A-01D	DNA	EFO	SRS301066	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVDV-14A-01D A42358 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42358	SRX593551	"Specific Capture analysis of normal sample TARGET-20-PAPVDV-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPVDV-14A-01D A42358 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42358_1_lane_dupsFlagged.bam	SRR1386080	@dbgap@:reads/SRP012000/SRS301066/SRX593551/SRR1386080/SRR1386080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVDV-09A-01D_TARGET-20-PAPVDV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPVET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVET-09A-01D	DNA	EFO	SRS633953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVET-09A-01D A41437 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41437	SRX588557	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVET-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPVET-09A-01D A41437 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41437_1_lane_dupsFlagged.bam	SRR1374886	@dbgap@:reads/SRP012000/SRS633953/SRX588557/SRR1374886/SRR1374886.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPVET-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPVET-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPVET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVET-09A-01D	DNA	EFO	SRS633953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVET-09A-01D A41437 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41437	SRX588557	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVET-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPVET-09A-01D A41437 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41437_1_lane_dupsFlagged.bam	SRR1374886	@dbgap@:reads/SRP012000/SRS633953/SRX588557/SRR1374886/SRR1374886.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVET-09A-01D_TARGET-20-PAPVET-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPVET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVET-09A-01D	DNA	EFO	SRS633953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVET-09A-01D A41437 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41437	SRX588557	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVET-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPVET-09A-01D A41437 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41437_1_lane_dupsFlagged.bam	SRR1374886	@dbgap@:reads/SRP012000/SRS633953/SRX588557/SRR1374886/SRR1374886.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVET-09A-01D_TARGET-20-PAPVET-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPVET-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVET-14A-01D	DNA	EFO	SRS637459	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVET-14A-01D A42884 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42884	SRX597877	"Specific Capture analysis of normal sample TARGET-20-PAPVET-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPVET-14A-01D A42884 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42884_1_lane_dupsFlagged.bam	SRR1395174	@dbgap@:reads/SRP012000/SRS637459/SRX597877/SRR1395174/SRR1395174.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPVET-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPVET-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPVET-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVET-14A-01D	DNA	EFO	SRS637459	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVET-14A-01D A42884 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42884	SRX597877	"Specific Capture analysis of normal sample TARGET-20-PAPVET-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPVET-14A-01D A42884 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42884_1_lane_dupsFlagged.bam	SRR1395174	@dbgap@:reads/SRP012000/SRS637459/SRX597877/SRR1395174/SRR1395174.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVET-09A-01D_TARGET-20-PAPVET-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPVET-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVET-14A-01D	DNA	EFO	SRS637459	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVET-14A-01D A42884 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42884	SRX597877	"Specific Capture analysis of normal sample TARGET-20-PAPVET-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPVET-14A-01D A42884 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42884_1_lane_dupsFlagged.bam	SRR1395174	@dbgap@:reads/SRP012000/SRS637459/SRX597877/SRR1395174/SRR1395174.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVET-09A-01D_TARGET-20-PAPVET-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVGE-09A-01D	DNA	EFO	SRS628732	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVGE-09A-01D A32167 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32167	SRX574427	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVGE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPVGE-09A-01D A32167 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32167_1_lane_dupsFlagged.bam	SRR1344885	@dbgap@:reads/SRP012000/SRS628732/SRX574427/SRR1344885/SRR1344885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPVGE-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPVGE-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVGE-09A-01D	DNA	EFO	SRS628732	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVGE-09A-01D A32167 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32167	SRX574427	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVGE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPVGE-09A-01D A32167 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32167_1_lane_dupsFlagged.bam	SRR1344885	@dbgap@:reads/SRP012000/SRS628732/SRX574427/SRR1344885/SRR1344885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVGE-09A-01D_TARGET-20-PAPVGE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVGE-09A-01D	DNA	EFO	SRS628732	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVGE-09A-01D A32167 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32167	SRX574427	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVGE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPVGE-09A-01D A32167 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32167_1_lane_dupsFlagged.bam	SRR1344885	@dbgap@:reads/SRP012000/SRS628732/SRX574427/SRR1344885/SRR1344885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVGE-09A-01D_TARGET-20-PAPVGE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVGE-14A-01D	DNA	EFO	SRS635762	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVGE-14A-01D A42359 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42359	SRX593596	"Specific Capture analysis of normal sample TARGET-20-PAPVGE-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPVGE-14A-01D A42359 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42359_1_lane_dupsFlagged.bam	SRR1386094	@dbgap@:reads/SRP012000/SRS635762/SRX593596/SRR1386094/SRR1386094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPVGE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPVGE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVGE-14A-01D	DNA	EFO	SRS635762	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVGE-14A-01D A42359 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42359	SRX593596	"Specific Capture analysis of normal sample TARGET-20-PAPVGE-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPVGE-14A-01D A42359 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42359_1_lane_dupsFlagged.bam	SRR1386094	@dbgap@:reads/SRP012000/SRS635762/SRX593596/SRR1386094/SRR1386094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVGE-09A-01D_TARGET-20-PAPVGE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVGE-14A-01D	DNA	EFO	SRS635762	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVGE-14A-01D A42359 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42359	SRX593596	"Specific Capture analysis of normal sample TARGET-20-PAPVGE-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPVGE-14A-01D A42359 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42359_1_lane_dupsFlagged.bam	SRR1386094	@dbgap@:reads/SRP012000/SRS635762/SRX593596/SRR1386094/SRR1386094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVGE-09A-01D_TARGET-20-PAPVGE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPVKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVKG-09A-02D	DNA	EFO	SRS628745	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVKG-09A-02D A32168 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32168	SRX574441	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVKG-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPVKG-09A-02D A32168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32168_1_lane_dupsFlagged.bam	SRR1344894	@dbgap@:reads/SRP012000/SRS628745/SRX574441/SRR1344894/SRR1344894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPVKG-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPVKG-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPVKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVKG-09A-02D	DNA	EFO	SRS628745	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVKG-09A-02D A32168 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32168	SRX574441	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVKG-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPVKG-09A-02D A32168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32168_1_lane_dupsFlagged.bam	SRR1344894	@dbgap@:reads/SRP012000/SRS628745/SRX574441/SRR1344894/SRR1344894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVKG-09A-02D_TARGET-20-PAPVKG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPVKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVKG-09A-02D	DNA	EFO	SRS628745	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVKG-09A-02D A32168 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32168	SRX574441	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVKG-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPVKG-09A-02D A32168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32168_1_lane_dupsFlagged.bam	SRR1344894	@dbgap@:reads/SRP012000/SRS628745/SRX574441/SRR1344894/SRR1344894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVKG-09A-02D_TARGET-20-PAPVKG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPVKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVKG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVKG-14A-01D	DNA	EFO	SRS635773	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVKG-14A-01D A42288 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42288	SRX593610	"Specific Capture analysis of normal sample TARGET-20-PAPVKG-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPVKG-14A-01D A42288 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42288_1_lane_dupsFlagged.bam	SRR1386065	@dbgap@:reads/SRP012000/SRS635773/SRX593610/SRR1386065/SRR1386065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPVKG-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPVKG-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPVKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVKG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVKG-14A-01D	DNA	EFO	SRS635773	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVKG-14A-01D A42288 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42288	SRX593610	"Specific Capture analysis of normal sample TARGET-20-PAPVKG-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPVKG-14A-01D A42288 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42288_1_lane_dupsFlagged.bam	SRR1386065	@dbgap@:reads/SRP012000/SRS635773/SRX593610/SRR1386065/SRR1386065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVKG-09A-02D_TARGET-20-PAPVKG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPVKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVKG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVKG-14A-01D	DNA	EFO	SRS635773	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVKG-14A-01D A42288 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42288	SRX593610	"Specific Capture analysis of normal sample TARGET-20-PAPVKG-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPVKG-14A-01D A42288 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42288_1_lane_dupsFlagged.bam	SRR1386065	@dbgap@:reads/SRP012000/SRS635773/SRX593610/SRR1386065/SRR1386065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVKG-09A-02D_TARGET-20-PAPVKG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPVWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPVWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVWB-09A-01D	DNA	EFO	SRS633902	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVWB-09A-01D A41438 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41438	SRX588506	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVWB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPVWB-09A-01D A41438 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41438_1_lane_dupsFlagged.bam	SRR1374864	@dbgap@:reads/SRP012000/SRS633902/SRX588506/SRR1374864/SRR1374864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPVWB-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPVWB-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPVWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPVWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVWB-09A-01D	DNA	EFO	SRS633902	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVWB-09A-01D A41438 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41438	SRX588506	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVWB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPVWB-09A-01D A41438 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41438_1_lane_dupsFlagged.bam	SRR1374864	@dbgap@:reads/SRP012000/SRS633902/SRX588506/SRR1374864/SRR1374864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVWB-09A-01D_TARGET-20-PAPVWB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPVWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPVWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVWB-09A-01D	DNA	EFO	SRS633902	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVWB-09A-01D A41438 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41438	SRX588506	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVWB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPVWB-09A-01D A41438 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41438_1_lane_dupsFlagged.bam	SRR1374864	@dbgap@:reads/SRP012000/SRS633902/SRX588506/SRR1374864/SRR1374864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVWB-09A-01D_TARGET-20-PAPVWB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPVWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPVWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVWB-14A-01D	DNA	EFO	SRS635781	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVWB-14A-01D A42334 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42334	SRX593620	"Specific Capture analysis of normal sample TARGET-20-PAPVWB-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPVWB-14A-01D A42334 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42334_1_lane_dupsFlagged.bam	SRR1386053	@dbgap@:reads/SRP012000/SRS635781/SRX593620/SRR1386053/SRR1386053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPVWB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPVWB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPVWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPVWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVWB-14A-01D	DNA	EFO	SRS635781	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVWB-14A-01D A42334 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42334	SRX593620	"Specific Capture analysis of normal sample TARGET-20-PAPVWB-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPVWB-14A-01D A42334 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42334_1_lane_dupsFlagged.bam	SRR1386053	@dbgap@:reads/SRP012000/SRS635781/SRX593620/SRR1386053/SRR1386053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVWB-09A-01D_TARGET-20-PAPVWB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPVWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPVWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVWB-14A-01D	DNA	EFO	SRS635781	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVWB-14A-01D A42334 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42334	SRX593620	"Specific Capture analysis of normal sample TARGET-20-PAPVWB-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPVWB-14A-01D A42334 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42334_1_lane_dupsFlagged.bam	SRR1386053	@dbgap@:reads/SRP012000/SRS635781/SRX593620/SRR1386053/SRR1386053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPVWB-09A-01D_TARGET-20-PAPVWB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-01D	DNA	EFO	SRS628288	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVZK-09A-01D A31276 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31276	SRX573346	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPVZK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPVZK-09A-01D A31276 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31276_1_lane_dupsFlagged.bam	SRR1342622	@dbgap@:reads/SRP012000/SRS628288/SRX573346/SRR1342622/SRR1342622.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPVZK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPVZK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPWFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPWFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWFN-09A-01D	DNA	EFO	SRS633893	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWFN-09A-01D A41439 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41439	SRX588497	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPWFN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPWFN-09A-01D A41439 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41439_1_lane_dupsFlagged.bam	SRR1374905	@dbgap@:reads/SRP012000/SRS633893/SRX588497/SRR1374905/SRR1374905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPWFN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPWFN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPWFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPWFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWFN-09A-01D	DNA	EFO	SRS633893	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWFN-09A-01D A41439 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41439	SRX588497	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPWFN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPWFN-09A-01D A41439 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41439_1_lane_dupsFlagged.bam	SRR1374905	@dbgap@:reads/SRP012000/SRS633893/SRX588497/SRR1374905/SRR1374905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWFN-09A-01D_TARGET-20-PAPWFN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPWFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPWFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWFN-09A-01D	DNA	EFO	SRS633893	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWFN-09A-01D A41439 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41439	SRX588497	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPWFN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPWFN-09A-01D A41439 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41439_1_lane_dupsFlagged.bam	SRR1374905	@dbgap@:reads/SRP012000/SRS633893/SRX588497/SRR1374905/SRR1374905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWFN-09A-01D_TARGET-20-PAPWFN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPWFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPWFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWFN-14A-01D	DNA	EFO	SRS637465	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWFN-14A-01D A42885 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42885	SRX597884	"Specific Capture analysis of normal sample TARGET-20-PAPWFN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPWFN-14A-01D A42885 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42885_1_lane_dupsFlagged.bam	SRR1395172	@dbgap@:reads/SRP012000/SRS637465/SRX597884/SRR1395172/SRR1395172.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPWFN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPWFN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPWFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPWFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWFN-14A-01D	DNA	EFO	SRS637465	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWFN-14A-01D A42885 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42885	SRX597884	"Specific Capture analysis of normal sample TARGET-20-PAPWFN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPWFN-14A-01D A42885 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42885_1_lane_dupsFlagged.bam	SRR1395172	@dbgap@:reads/SRP012000/SRS637465/SRX597884/SRR1395172/SRR1395172.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWFN-09A-01D_TARGET-20-PAPWFN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPWFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPWFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWFN-14A-01D	DNA	EFO	SRS637465	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWFN-14A-01D A42885 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42885	SRX597884	"Specific Capture analysis of normal sample TARGET-20-PAPWFN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPWFN-14A-01D A42885 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42885_1_lane_dupsFlagged.bam	SRR1395172	@dbgap@:reads/SRP012000/SRS637465/SRX597884/SRR1395172/SRR1395172.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWFN-09A-01D_TARGET-20-PAPWFN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-01D	DNA	EFO	SRS628737	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWHS-09A-01D A32169 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32169	SRX574432	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPWHS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPWHS-09A-01D A32169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32169_1_lane_dupsFlagged.bam	SRR1344851	@dbgap@:reads/SRP012000/SRS628737/SRX574432/SRR1344851/SRR1344851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPWHS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPWHS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-01D	DNA	EFO	SRS628737	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWHS-09A-01D A32169 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32169	SRX574432	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPWHS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPWHS-09A-01D A32169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32169_1_lane_dupsFlagged.bam	SRR1344851	@dbgap@:reads/SRP012000/SRS628737/SRX574432/SRR1344851/SRR1344851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWHS-09A-01D_TARGET-20-PAPWHS-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-01D	DNA	EFO	SRS628737	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWHS-09A-01D A32169 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32169	SRX574432	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPWHS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPWHS-09A-01D A32169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32169_1_lane_dupsFlagged.bam	SRR1344851	@dbgap@:reads/SRP012000/SRS628737/SRX574432/SRR1344851/SRR1344851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWHS-09A-01D_TARGET-20-PAPWHS-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-14A-02D	DNA	EFO	SRS301068	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWHS-14A-02D A41658 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41658	SRX593469	"Specific Capture analysis of normal sample TARGET-20-PAPWHS-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPWHS-14A-02D A41658 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41658_1_lane_dupsFlagged.bam	SRR1385938	@dbgap@:reads/SRP012000/SRS301068/SRX593469/SRR1385938/SRR1385938.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPWHS-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPWHS-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-14A-02D	DNA	EFO	SRS301068	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWHS-14A-02D A41658 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41658	SRX593469	"Specific Capture analysis of normal sample TARGET-20-PAPWHS-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPWHS-14A-02D A41658 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41658_1_lane_dupsFlagged.bam	SRR1385938	@dbgap@:reads/SRP012000/SRS301068/SRX593469/SRR1385938/SRR1385938.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWHS-09A-01D_TARGET-20-PAPWHS-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-14A-02D	DNA	EFO	SRS301068	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWHS-14A-02D A41658 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41658	SRX593469	"Specific Capture analysis of normal sample TARGET-20-PAPWHS-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPWHS-14A-02D A41658 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41658_1_lane_dupsFlagged.bam	SRR1385938	@dbgap@:reads/SRP012000/SRS301068/SRX593469/SRR1385938/SRR1385938.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWHS-09A-01D_TARGET-20-PAPWHS-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-02D	DNA	EFO	SRS628765	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWIU-09A-02D A32170 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32170	SRX574462	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPWIU-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PAPWIU-09A-02D A32170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32170_1_lane_dupsFlagged.bam	SRR1344860	@dbgap@:reads/SRP012000/SRS628765/SRX574462/SRR1344860/SRR1344860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPWIU-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPWIU-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-02D	DNA	EFO	SRS628765	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWIU-09A-02D A32170 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32170	SRX574462	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPWIU-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PAPWIU-09A-02D A32170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32170_1_lane_dupsFlagged.bam	SRR1344860	@dbgap@:reads/SRP012000/SRS628765/SRX574462/SRR1344860/SRR1344860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWIU-09A-02D_TARGET-20-PAPWIU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-02D	DNA	EFO	SRS628765	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWIU-09A-02D A32170 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32170	SRX574462	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPWIU-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PAPWIU-09A-02D A32170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32170_1_lane_dupsFlagged.bam	SRR1344860	@dbgap@:reads/SRP012000/SRS628765/SRX574462/SRR1344860/SRR1344860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWIU-09A-02D_TARGET-20-PAPWIU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-14A-01D	DNA	EFO	SRS301070	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWIU-14A-01D A42360 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42360	SRX593611	"Specific Capture analysis of normal sample TARGET-20-PAPWIU-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPWIU-14A-01D A42360 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42360_1_lane_dupsFlagged.bam	SRR1386085	@dbgap@:reads/SRP012000/SRS301070/SRX593611/SRR1386085/SRR1386085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPWIU-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPWIU-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-14A-01D	DNA	EFO	SRS301070	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWIU-14A-01D A42360 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42360	SRX593611	"Specific Capture analysis of normal sample TARGET-20-PAPWIU-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPWIU-14A-01D A42360 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42360_1_lane_dupsFlagged.bam	SRR1386085	@dbgap@:reads/SRP012000/SRS301070/SRX593611/SRR1386085/SRR1386085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWIU-09A-02D_TARGET-20-PAPWIU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-14A-01D	DNA	EFO	SRS301070	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWIU-14A-01D A42360 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42360	SRX593611	"Specific Capture analysis of normal sample TARGET-20-PAPWIU-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPWIU-14A-01D A42360 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42360_1_lane_dupsFlagged.bam	SRR1386085	@dbgap@:reads/SRP012000/SRS301070/SRX593611/SRR1386085/SRR1386085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWIU-09A-02D_TARGET-20-PAPWIU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-03D	DNA	EFO	SRS628738	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWYK-09A-03D A32171 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32171	SRX574433	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPWYK-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PAPWYK-09A-03D A32171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32171_1_lane_dupsFlagged.bam	SRR1344871	@dbgap@:reads/SRP012000/SRS628738/SRX574433/SRR1344871/SRR1344871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPWYK-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPWYK-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-03D	DNA	EFO	SRS628738	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWYK-09A-03D A32171 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32171	SRX574433	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPWYK-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PAPWYK-09A-03D A32171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32171_1_lane_dupsFlagged.bam	SRR1344871	@dbgap@:reads/SRP012000/SRS628738/SRX574433/SRR1344871/SRR1344871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWYK-09A-03D_TARGET-20-PAPWYK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-03D	DNA	EFO	SRS628738	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWYK-09A-03D A32171 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32171	SRX574433	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPWYK-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PAPWYK-09A-03D A32171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32171_1_lane_dupsFlagged.bam	SRR1344871	@dbgap@:reads/SRP012000/SRS628738/SRX574433/SRR1344871/SRR1344871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWYK-09A-03D_TARGET-20-PAPWYK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-14A-01D	DNA	EFO	SRS301072	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWYK-14A-01D A42886 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42886	SRX597855	"Specific Capture analysis of normal sample TARGET-20-PAPWYK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPWYK-14A-01D A42886 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42886_1_lane_dupsFlagged.bam	SRR1395210	@dbgap@:reads/SRP012000/SRS301072/SRX597855/SRR1395210/SRR1395210.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPWYK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPWYK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-14A-01D	DNA	EFO	SRS301072	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWYK-14A-01D A42886 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42886	SRX597855	"Specific Capture analysis of normal sample TARGET-20-PAPWYK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPWYK-14A-01D A42886 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42886_1_lane_dupsFlagged.bam	SRR1395210	@dbgap@:reads/SRP012000/SRS301072/SRX597855/SRR1395210/SRR1395210.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWYK-09A-03D_TARGET-20-PAPWYK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-14A-01D	DNA	EFO	SRS301072	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWYK-14A-01D A42886 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42886	SRX597855	"Specific Capture analysis of normal sample TARGET-20-PAPWYK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPWYK-14A-01D A42886 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42886_1_lane_dupsFlagged.bam	SRR1395210	@dbgap@:reads/SRP012000/SRS301072/SRX597855/SRR1395210/SRR1395210.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWYK-09A-03D_TARGET-20-PAPWYK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPWZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWZR-09A-01D	DNA	EFO	SRS628698	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWZR-09A-01D A32172 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32172	SRX574391	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPWZR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PAPWZR-09A-01D A32172 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32172_1_lane_dupsFlagged.bam	SRR1344906	@dbgap@:reads/SRP012000/SRS628698/SRX574391/SRR1344906/SRR1344906.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPWZR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPWZR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPWZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWZR-09A-01D	DNA	EFO	SRS628698	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWZR-09A-01D A32172 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32172	SRX574391	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPWZR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PAPWZR-09A-01D A32172 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32172_1_lane_dupsFlagged.bam	SRR1344906	@dbgap@:reads/SRP012000/SRS628698/SRX574391/SRR1344906/SRR1344906.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWZR-09A-01D_TARGET-20-PAPWZR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPWZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWZR-09A-01D	DNA	EFO	SRS628698	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWZR-09A-01D A32172 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32172	SRX574391	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPWZR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PAPWZR-09A-01D A32172 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32172_1_lane_dupsFlagged.bam	SRR1344906	@dbgap@:reads/SRP012000/SRS628698/SRX574391/SRR1344906/SRR1344906.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWZR-09A-01D_TARGET-20-PAPWZR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPWZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWZR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWZR-10A-01D	DNA	EFO	SRS635752	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWZR-10A-01D A42335 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42335	SRX593586	"Specific Capture analysis of normal sample TARGET-20-PAPWZR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPWZR-10A-01D A42335 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42335_1_lane_dupsFlagged.bam	SRR1386057	@dbgap@:reads/SRP012000/SRS635752/SRX593586/SRR1386057/SRR1386057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPWZR-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPWZR-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPWZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWZR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWZR-10A-01D	DNA	EFO	SRS635752	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWZR-10A-01D A42335 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42335	SRX593586	"Specific Capture analysis of normal sample TARGET-20-PAPWZR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPWZR-10A-01D A42335 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42335_1_lane_dupsFlagged.bam	SRR1386057	@dbgap@:reads/SRP012000/SRS635752/SRX593586/SRR1386057/SRR1386057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWZR-09A-01D_TARGET-20-PAPWZR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPWZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWZR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWZR-10A-01D	DNA	EFO	SRS635752	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWZR-10A-01D A42335 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42335	SRX593586	"Specific Capture analysis of normal sample TARGET-20-PAPWZR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPWZR-10A-01D A42335 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42335_1_lane_dupsFlagged.bam	SRR1386057	@dbgap@:reads/SRP012000/SRS635752/SRX593586/SRR1386057/SRR1386057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPWZR-09A-01D_TARGET-20-PAPWZR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPXAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPXAZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXAZ-09A-01D	DNA	EFO	SRS629128	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXAZ-09A-01D A33272 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33272	SRX575185	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPXAZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPXAZ-09A-01D A33272 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33272_1_lane_dupsFlagged.bam	SRR1346496	@dbgap@:reads/SRP012000/SRS629128/SRX575185/SRR1346496/SRR1346496.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPXAZ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPXAZ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPXAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPXAZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXAZ-09A-01D	DNA	EFO	SRS629128	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXAZ-09A-01D A33272 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33272	SRX575185	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPXAZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPXAZ-09A-01D A33272 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33272_1_lane_dupsFlagged.bam	SRR1346496	@dbgap@:reads/SRP012000/SRS629128/SRX575185/SRR1346496/SRR1346496.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXAZ-09A-01D_TARGET-20-PAPXAZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPXAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPXAZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXAZ-09A-01D	DNA	EFO	SRS629128	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXAZ-09A-01D A33272 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33272	SRX575185	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPXAZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPXAZ-09A-01D A33272 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33272_1_lane_dupsFlagged.bam	SRR1346496	@dbgap@:reads/SRP012000/SRS629128/SRX575185/SRR1346496/SRR1346496.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXAZ-09A-01D_TARGET-20-PAPXAZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPXAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPXAZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXAZ-14A-01D	DNA	EFO	SRS635732	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXAZ-14A-01D A42336 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42336	SRX593562	"Specific Capture analysis of normal sample TARGET-20-PAPXAZ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPXAZ-14A-01D A42336 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42336_1_lane_dupsFlagged.bam	SRR1386049	@dbgap@:reads/SRP012000/SRS635732/SRX593562/SRR1386049/SRR1386049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPXAZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPXAZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPXAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPXAZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXAZ-14A-01D	DNA	EFO	SRS635732	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXAZ-14A-01D A42336 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42336	SRX593562	"Specific Capture analysis of normal sample TARGET-20-PAPXAZ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPXAZ-14A-01D A42336 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42336_1_lane_dupsFlagged.bam	SRR1386049	@dbgap@:reads/SRP012000/SRS635732/SRX593562/SRR1386049/SRR1386049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXAZ-09A-01D_TARGET-20-PAPXAZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPXAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPXAZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXAZ-14A-01D	DNA	EFO	SRS635732	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXAZ-14A-01D A42336 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42336	SRX593562	"Specific Capture analysis of normal sample TARGET-20-PAPXAZ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPXAZ-14A-01D A42336 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42336_1_lane_dupsFlagged.bam	SRR1386049	@dbgap@:reads/SRP012000/SRS635732/SRX593562/SRR1386049/SRR1386049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXAZ-09A-01D_TARGET-20-PAPXAZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPXJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPXJT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXJT-09A-01D	DNA	EFO	SRS635515	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXJT-09A-01D A41731 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41731	SRX593237	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPXJT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPXJT-09A-01D A41731 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41731_1_lane_dupsFlagged.bam	SRR1385630	@dbgap@:reads/SRP012000/SRS635515/SRX593237/SRR1385630/SRR1385630.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPXJT-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPXJT-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPXJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPXJT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXJT-09A-01D	DNA	EFO	SRS635515	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXJT-09A-01D A41731 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41731	SRX593237	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPXJT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPXJT-09A-01D A41731 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41731_1_lane_dupsFlagged.bam	SRR1385630	@dbgap@:reads/SRP012000/SRS635515/SRX593237/SRR1385630/SRR1385630.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXJT-09A-01D_TARGET-20-PAPXJT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPXJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPXJT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXJT-09A-01D	DNA	EFO	SRS635515	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXJT-09A-01D A41731 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41731	SRX593237	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPXJT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPXJT-09A-01D A41731 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41731_1_lane_dupsFlagged.bam	SRR1385630	@dbgap@:reads/SRP012000/SRS635515/SRX593237/SRR1385630/SRR1385630.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXJT-09A-01D_TARGET-20-PAPXJT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPXJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPXJT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXJT-14A-01D	DNA	EFO	SRS634681	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXJT-14A-01D A41536 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41536	SRX590780	"Specific Capture analysis of normal sample TARGET-20-PAPXJT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPXJT-14A-01D A41536 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41536_1_lane_dupsFlagged.bam	SRR1379829	@dbgap@:reads/SRP012000/SRS634681/SRX590780/SRR1379829/SRR1379829.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPXJT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPXJT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPXJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPXJT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXJT-14A-01D	DNA	EFO	SRS634681	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXJT-14A-01D A41536 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41536	SRX590780	"Specific Capture analysis of normal sample TARGET-20-PAPXJT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPXJT-14A-01D A41536 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41536_1_lane_dupsFlagged.bam	SRR1379829	@dbgap@:reads/SRP012000/SRS634681/SRX590780/SRR1379829/SRR1379829.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXJT-09A-01D_TARGET-20-PAPXJT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPXJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPXJT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXJT-14A-01D	DNA	EFO	SRS634681	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXJT-14A-01D A41536 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41536	SRX590780	"Specific Capture analysis of normal sample TARGET-20-PAPXJT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPXJT-14A-01D A41536 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41536_1_lane_dupsFlagged.bam	SRR1379829	@dbgap@:reads/SRP012000/SRS634681/SRX590780/SRR1379829/SRR1379829.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXJT-09A-01D_TARGET-20-PAPXJT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-01D	DNA	EFO	SRS270680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXRJ-09A-01D A31204 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31204	SRX573384	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPXRJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PAPXRJ-09A-01D A31204 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31204_1_lane_dupsFlagged.bam	SRR1342670	@dbgap@:reads/SRP012000/SRS270680/SRX573384/SRR1342670/SRR1342670.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPXRJ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPXRJ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-01D	DNA	EFO	SRS270680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXRJ-09A-01D A31204 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31204	SRX573384	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPXRJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PAPXRJ-09A-01D A31204 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31204_1_lane_dupsFlagged.bam	SRR1342670	@dbgap@:reads/SRP012000/SRS270680/SRX573384/SRR1342670/SRR1342670.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXRJ-09A-01D_TARGET-20-PAPXRJ-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-01D	DNA	EFO	SRS270680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXRJ-09A-01D A31204 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31204	SRX573384	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPXRJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PAPXRJ-09A-01D A31204 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31204_1_lane_dupsFlagged.bam	SRR1342670	@dbgap@:reads/SRP012000/SRS270680/SRX573384/SRR1342670/SRR1342670.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXRJ-09A-01D_TARGET-20-PAPXRJ-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-02D	DNA	EFO	SRS637386	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXRJ-14A-02D A42776 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42776	SRX597793	"Specific Capture analysis of normal sample TARGET-20-PAPXRJ-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PAPXRJ-14A-02D A42776 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42776_1_lane_dupsFlagged.bam	SRR1395081	@dbgap@:reads/SRP012000/SRS637386/SRX597793/SRR1395081/SRR1395081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPXRJ-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPXRJ-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-02D	DNA	EFO	SRS637386	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXRJ-14A-02D A42776 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42776	SRX597793	"Specific Capture analysis of normal sample TARGET-20-PAPXRJ-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PAPXRJ-14A-02D A42776 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42776_1_lane_dupsFlagged.bam	SRR1395081	@dbgap@:reads/SRP012000/SRS637386/SRX597793/SRR1395081/SRR1395081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXRJ-09A-01D_TARGET-20-PAPXRJ-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-14A-02D	DNA	EFO	SRS637386	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXRJ-14A-02D A42776 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42776	SRX597793	"Specific Capture analysis of normal sample TARGET-20-PAPXRJ-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PAPXRJ-14A-02D A42776 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42776_1_lane_dupsFlagged.bam	SRR1395081	@dbgap@:reads/SRP012000/SRS637386/SRX597793/SRR1395081/SRR1395081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXRJ-09A-01D_TARGET-20-PAPXRJ-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-02D	DNA	EFO	SRS628299	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXUF-09A-02D A31220 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31220	SRX573363	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPXUF-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPXUF-09A-02D A31220 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31220_1_lane_dupsFlagged.bam	SRR1342626	@dbgap@:reads/SRP012000/SRS628299/SRX573363/SRR1342626/SRR1342626.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPXUF-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPXUF-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-02D	DNA	EFO	SRS628299	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXUF-09A-02D A31220 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31220	SRX573363	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPXUF-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPXUF-09A-02D A31220 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31220_1_lane_dupsFlagged.bam	SRR1342626	@dbgap@:reads/SRP012000/SRS628299/SRX573363/SRR1342626/SRR1342626.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXUF-09A-02D_TARGET-20-PAPXUF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-02D	DNA	EFO	SRS628299	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXUF-09A-02D A31220 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31220	SRX573363	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPXUF-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPXUF-09A-02D A31220 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31220_1_lane_dupsFlagged.bam	SRR1342626	@dbgap@:reads/SRP012000/SRS628299/SRX573363/SRR1342626/SRR1342626.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXUF-09A-02D_TARGET-20-PAPXUF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-14A-01D	DNA	EFO	SRS635630	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXUF-14A-01D A41682 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41682	SRX593453	"Specific Capture analysis of normal sample TARGET-20-PAPXUF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPXUF-14A-01D A41682 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41682_1_lane_dupsFlagged.bam	SRR1385955	@dbgap@:reads/SRP012000/SRS635630/SRX593453/SRR1385955/SRR1385955.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPXUF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPXUF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-14A-01D	DNA	EFO	SRS635630	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXUF-14A-01D A41682 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41682	SRX593453	"Specific Capture analysis of normal sample TARGET-20-PAPXUF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPXUF-14A-01D A41682 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41682_1_lane_dupsFlagged.bam	SRR1385955	@dbgap@:reads/SRP012000/SRS635630/SRX593453/SRR1385955/SRR1385955.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXUF-09A-02D_TARGET-20-PAPXUF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-14A-01D	DNA	EFO	SRS635630	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXUF-14A-01D A41682 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41682	SRX593453	"Specific Capture analysis of normal sample TARGET-20-PAPXUF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPXUF-14A-01D A41682 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41682_1_lane_dupsFlagged.bam	SRR1385955	@dbgap@:reads/SRP012000/SRS635630/SRX593453/SRR1385955/SRR1385955.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXUF-09A-02D_TARGET-20-PAPXUF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-01D	DNA	EFO	SRS628318	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXWI-09A-01D A31274 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31274	SRX573389	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPXWI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPXWI-09A-01D A31274 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31274_1_lane_dupsFlagged.bam	SRR1342640	@dbgap@:reads/SRP012000/SRS628318/SRX573389/SRR1342640/SRR1342640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPXWI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPXWI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-01D	DNA	EFO	SRS628318	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXWI-09A-01D A31274 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31274	SRX573389	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPXWI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPXWI-09A-01D A31274 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31274_1_lane_dupsFlagged.bam	SRR1342640	@dbgap@:reads/SRP012000/SRS628318/SRX573389/SRR1342640/SRR1342640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXWI-09A-01D_TARGET-20-PAPXWI-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-01D	DNA	EFO	SRS628318	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXWI-09A-01D A31274 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31274	SRX573389	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPXWI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPXWI-09A-01D A31274 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31274_1_lane_dupsFlagged.bam	SRR1342640	@dbgap@:reads/SRP012000/SRS628318/SRX573389/SRR1342640/SRR1342640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXWI-09A-01D_TARGET-20-PAPXWI-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-14A-02D	DNA	EFO	SRS270683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXWI-14A-02D A42361 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42361	SRX593612	"Specific Capture analysis of normal sample TARGET-20-PAPXWI-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPXWI-14A-02D A42361 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42361_1_lane_dupsFlagged.bam	SRR1386074	@dbgap@:reads/SRP012000/SRS270683/SRX593612/SRR1386074/SRR1386074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPXWI-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPXWI-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-14A-02D	DNA	EFO	SRS270683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXWI-14A-02D A42361 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42361	SRX593612	"Specific Capture analysis of normal sample TARGET-20-PAPXWI-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPXWI-14A-02D A42361 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42361_1_lane_dupsFlagged.bam	SRR1386074	@dbgap@:reads/SRP012000/SRS270683/SRX593612/SRR1386074/SRR1386074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXWI-09A-01D_TARGET-20-PAPXWI-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-14A-02D	DNA	EFO	SRS270683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXWI-14A-02D A42361 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42361	SRX593612	"Specific Capture analysis of normal sample TARGET-20-PAPXWI-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPXWI-14A-02D A42361 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42361_1_lane_dupsFlagged.bam	SRR1386074	@dbgap@:reads/SRP012000/SRS270683/SRX593612/SRR1386074/SRR1386074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPXWI-09A-01D_TARGET-20-PAPXWI-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPYFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPYFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPYFJ-09A-01D	DNA	EFO	SRS633894	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPYFJ-09A-01D A41440 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41440	SRX588498	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPYFJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPYFJ-09A-01D A41440 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41440_1_lane_dupsFlagged.bam	SRR1374852	@dbgap@:reads/SRP012000/SRS633894/SRX588498/SRR1374852/SRR1374852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPYFJ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPYFJ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPYUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPYUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPYUI-09A-01D	DNA	EFO	SRS633699	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPYUI-09A-01D A33363 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33363	SRX587993	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPYUI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PAPYUI-09A-01D A33363 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33363_1_lane_dupsFlagged.bam	SRR1373807	@dbgap@:reads/SRP012000/SRS633699/SRX587993/SRR1373807/SRR1373807.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPYUI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPYUI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPYUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPYUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPYUI-09A-01D	DNA	EFO	SRS633699	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPYUI-09A-01D A33363 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33363	SRX587993	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPYUI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PAPYUI-09A-01D A33363 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33363_1_lane_dupsFlagged.bam	SRR1373807	@dbgap@:reads/SRP012000/SRS633699/SRX587993/SRR1373807/SRR1373807.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPYUI-09A-01D_TARGET-20-PAPYUI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPYUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPYUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPYUI-09A-01D	DNA	EFO	SRS633699	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPYUI-09A-01D A33363 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33363	SRX587993	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPYUI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PAPYUI-09A-01D A33363 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33363_1_lane_dupsFlagged.bam	SRR1373807	@dbgap@:reads/SRP012000/SRS633699/SRX587993/SRR1373807/SRR1373807.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPYUI-09A-01D_TARGET-20-PAPYUI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPYUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPYUI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPYUI-14A-01D	DNA	EFO	SRS636010	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPYUI-14A-01D A42626 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42626	SRX593981	"Specific Capture analysis of normal sample TARGET-20-PAPYUI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PAPYUI-14A-01D A42626 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42626_1_lane_dupsFlagged.bam	SRR1386447	@dbgap@:reads/SRP012000/SRS636010/SRX593981/SRR1386447/SRR1386447.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPYUI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPYUI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPYUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPYUI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPYUI-14A-01D	DNA	EFO	SRS636010	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPYUI-14A-01D A42626 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42626	SRX593981	"Specific Capture analysis of normal sample TARGET-20-PAPYUI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PAPYUI-14A-01D A42626 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42626_1_lane_dupsFlagged.bam	SRR1386447	@dbgap@:reads/SRP012000/SRS636010/SRX593981/SRR1386447/SRR1386447.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPYUI-09A-01D_TARGET-20-PAPYUI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPYUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPYUI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPYUI-14A-01D	DNA	EFO	SRS636010	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPYUI-14A-01D A42626 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42626	SRX593981	"Specific Capture analysis of normal sample TARGET-20-PAPYUI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PAPYUI-14A-01D A42626 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42626_1_lane_dupsFlagged.bam	SRR1386447	@dbgap@:reads/SRP012000/SRS636010/SRX593981/SRR1386447/SRR1386447.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPYUI-09A-01D_TARGET-20-PAPYUI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZCL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZCL-04A-01D	DNA	EFO	SRS637345	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZCL-04A-01D A42192 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42192	SRX597738	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZCL-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPZCL-04A-01D A42192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42192_1_lane_dupsFlagged.bam	SRR1394982	@dbgap@:reads/SRP012000/SRS637345/SRX597738/SRR1394982/SRR1394982.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZCL-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZCL-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPZCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZCL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZCL-04A-01D	DNA	EFO	SRS637345	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZCL-04A-01D A42192 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42192	SRX597738	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZCL-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPZCL-04A-01D A42192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42192_1_lane_dupsFlagged.bam	SRR1394982	@dbgap@:reads/SRP012000/SRS637345/SRX597738/SRR1394982/SRR1394982.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZCL-04A-01D_TARGET-20-PAPZCL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZCL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZCL-04A-01D	DNA	EFO	SRS637345	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZCL-04A-01D A42192 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42192	SRX597738	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZCL-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPZCL-04A-01D A42192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42192_1_lane_dupsFlagged.bam	SRR1394982	@dbgap@:reads/SRP012000/SRS637345/SRX597738/SRR1394982/SRR1394982.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZCL-04A-01D_TARGET-20-PAPZCL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZCL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZCL-09A-01D	DNA	EFO	SRS633945	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZCL-09A-01D A41441 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41441	SRX588551	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZCL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPZCL-09A-01D A41441 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41441_1_lane_dupsFlagged.bam	SRR1374911	@dbgap@:reads/SRP012000/SRS633945/SRX588551/SRR1374911/SRR1374911.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZCL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZCL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPZCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZCL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZCL-09A-01D	DNA	EFO	SRS633945	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZCL-09A-01D A41441 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41441	SRX588551	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZCL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPZCL-09A-01D A41441 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41441_1_lane_dupsFlagged.bam	SRR1374911	@dbgap@:reads/SRP012000/SRS633945/SRX588551/SRR1374911/SRR1374911.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZCL-09A-01D_TARGET-20-PAPZCL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZCL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZCL-09A-01D	DNA	EFO	SRS633945	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZCL-09A-01D A41441 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41441	SRX588551	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZCL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPZCL-09A-01D A41441 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41441_1_lane_dupsFlagged.bam	SRR1374911	@dbgap@:reads/SRP012000/SRS633945/SRX588551/SRR1374911/SRR1374911.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZCL-09A-01D_TARGET-20-PAPZCL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZCL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZCL-10A-01D	DNA	EFO	SRS637448	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZCL-10A-01D A42916 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42916	SRX597865	"Specific Capture analysis of normal sample TARGET-20-PAPZCL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPZCL-10A-01D A42916 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42916_1_lane_dupsFlagged.bam	SRR1395193	@dbgap@:reads/SRP012000/SRS637448/SRX597865/SRR1395193/SRR1395193.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZCL-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZCL-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPZCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZCL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZCL-10A-01D	DNA	EFO	SRS637448	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZCL-10A-01D A42916 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42916	SRX597865	"Specific Capture analysis of normal sample TARGET-20-PAPZCL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPZCL-10A-01D A42916 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42916_1_lane_dupsFlagged.bam	SRR1395193	@dbgap@:reads/SRP012000/SRS637448/SRX597865/SRR1395193/SRR1395193.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZCL-04A-01D_TARGET-20-PAPZCL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZCL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZCL-10A-01D	DNA	EFO	SRS637448	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZCL-10A-01D A42916 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42916	SRX597865	"Specific Capture analysis of normal sample TARGET-20-PAPZCL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPZCL-10A-01D A42916 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42916_1_lane_dupsFlagged.bam	SRR1395193	@dbgap@:reads/SRP012000/SRS637448/SRX597865/SRR1395193/SRR1395193.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZCL-04A-01D_TARGET-20-PAPZCL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZCL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZCL-10A-01D	DNA	EFO	SRS637448	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZCL-10A-01D A42916 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42916	SRX597865	"Specific Capture analysis of normal sample TARGET-20-PAPZCL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPZCL-10A-01D A42916 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42916_1_lane_dupsFlagged.bam	SRR1395193	@dbgap@:reads/SRP012000/SRS637448/SRX597865/SRR1395193/SRR1395193.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZCL-09A-01D_TARGET-20-PAPZCL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZCL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZCL-10A-01D	DNA	EFO	SRS637448	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZCL-10A-01D A42916 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42916	SRX597865	"Specific Capture analysis of normal sample TARGET-20-PAPZCL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPZCL-10A-01D A42916 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42916_1_lane_dupsFlagged.bam	SRR1395193	@dbgap@:reads/SRP012000/SRS637448/SRX597865/SRR1395193/SRR1395193.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZCL-09A-01D_TARGET-20-PAPZCL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZCZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZCZ-03A-01D	DNA	EFO	SRS629117	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZCZ-03A-01D A33275 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33275	SRX575173	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZCZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPZCZ-03A-01D A33275 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33275_1_lane_dupsFlagged.bam	SRR1346469	@dbgap@:reads/SRP012000/SRS629117/SRX575173/SRR1346469/SRR1346469.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZCZ-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZCZ-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPZCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZCZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZCZ-03A-01D	DNA	EFO	SRS629117	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZCZ-03A-01D A33275 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33275	SRX575173	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZCZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPZCZ-03A-01D A33275 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33275_1_lane_dupsFlagged.bam	SRR1346469	@dbgap@:reads/SRP012000/SRS629117/SRX575173/SRR1346469/SRR1346469.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZCZ-03A-01D_TARGET-20-PAPZCZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZCZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZCZ-03A-01D	DNA	EFO	SRS629117	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZCZ-03A-01D A33275 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33275	SRX575173	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZCZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPZCZ-03A-01D A33275 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33275_1_lane_dupsFlagged.bam	SRR1346469	@dbgap@:reads/SRP012000/SRS629117/SRX575173/SRR1346469/SRR1346469.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZCZ-03A-01D_TARGET-20-PAPZCZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZCZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZCZ-14A-01D	DNA	EFO	SRS637482	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZCZ-14A-01D A42888 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42888	SRX597912	"Specific Capture analysis of normal sample TARGET-20-PAPZCZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPZCZ-14A-01D A42888 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42888_1_lane_dupsFlagged.bam	SRR1395161	@dbgap@:reads/SRP012000/SRS637482/SRX597912/SRR1395161/SRR1395161.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZCZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZCZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPZCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZCZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZCZ-14A-01D	DNA	EFO	SRS637482	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZCZ-14A-01D A42888 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42888	SRX597912	"Specific Capture analysis of normal sample TARGET-20-PAPZCZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPZCZ-14A-01D A42888 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42888_1_lane_dupsFlagged.bam	SRR1395161	@dbgap@:reads/SRP012000/SRS637482/SRX597912/SRR1395161/SRR1395161.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZCZ-03A-01D_TARGET-20-PAPZCZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZCZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZCZ-14A-01D	DNA	EFO	SRS637482	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZCZ-14A-01D A42888 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42888	SRX597912	"Specific Capture analysis of normal sample TARGET-20-PAPZCZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPZCZ-14A-01D A42888 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42888_1_lane_dupsFlagged.bam	SRR1395161	@dbgap@:reads/SRP012000/SRS637482/SRX597912/SRR1395161/SRR1395161.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZCZ-03A-01D_TARGET-20-PAPZCZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZFV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZFV-09A-01D	DNA	EFO	SRS629137	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZFV-09A-01D A33273 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33273	SRX575193	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZFV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPZFV-09A-01D A33273 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33273_1_lane_dupsFlagged.bam	SRR1346493	@dbgap@:reads/SRP012000/SRS629137/SRX575193/SRR1346493/SRR1346493.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZFV-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZFV-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPZFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZFV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZFV-09A-01D	DNA	EFO	SRS629137	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZFV-09A-01D A33273 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33273	SRX575193	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZFV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPZFV-09A-01D A33273 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33273_1_lane_dupsFlagged.bam	SRR1346493	@dbgap@:reads/SRP012000/SRS629137/SRX575193/SRR1346493/SRR1346493.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZFV-09A-01D_TARGET-20-PAPZFV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZFV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZFV-09A-01D	DNA	EFO	SRS629137	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZFV-09A-01D A33273 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33273	SRX575193	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZFV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPZFV-09A-01D A33273 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33273_1_lane_dupsFlagged.bam	SRR1346493	@dbgap@:reads/SRP012000/SRS629137/SRX575193/SRR1346493/SRR1346493.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZFV-09A-01D_TARGET-20-PAPZFV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZFV-14A-01D	DNA	EFO	SRS635691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZFV-14A-01D A41659 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41659	SRX593514	"Specific Capture analysis of normal sample TARGET-20-PAPZFV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPZFV-14A-01D A41659 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41659_1_lane_dupsFlagged.bam	SRR1385993	@dbgap@:reads/SRP012000/SRS635691/SRX593514/SRR1385993/SRR1385993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZFV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZFV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPZFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZFV-14A-01D	DNA	EFO	SRS635691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZFV-14A-01D A41659 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41659	SRX593514	"Specific Capture analysis of normal sample TARGET-20-PAPZFV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPZFV-14A-01D A41659 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41659_1_lane_dupsFlagged.bam	SRR1385993	@dbgap@:reads/SRP012000/SRS635691/SRX593514/SRR1385993/SRR1385993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZFV-09A-01D_TARGET-20-PAPZFV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZFV-14A-01D	DNA	EFO	SRS635691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZFV-14A-01D A41659 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41659	SRX593514	"Specific Capture analysis of normal sample TARGET-20-PAPZFV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPZFV-14A-01D A41659 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41659_1_lane_dupsFlagged.bam	SRR1385993	@dbgap@:reads/SRP012000/SRS635691/SRX593514/SRR1385993/SRR1385993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZFV-09A-01D_TARGET-20-PAPZFV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPZIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZIZ-09A-02D	DNA	EFO	SRS628764	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZIZ-09A-02D A32173 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32173	SRX574460	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZIZ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PAPZIZ-09A-02D A32173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32173_1_lane_dupsFlagged.bam	SRR1344887	@dbgap@:reads/SRP012000/SRS628764/SRX574460/SRR1344887/SRR1344887.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZIZ-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZIZ-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPZIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPZIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZIZ-09A-02D	DNA	EFO	SRS628764	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZIZ-09A-02D A32173 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32173	SRX574460	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZIZ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PAPZIZ-09A-02D A32173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32173_1_lane_dupsFlagged.bam	SRR1344887	@dbgap@:reads/SRP012000/SRS628764/SRX574460/SRR1344887/SRR1344887.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZIZ-09A-02D_TARGET-20-PAPZIZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPZIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZIZ-09A-02D	DNA	EFO	SRS628764	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZIZ-09A-02D A32173 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32173	SRX574460	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZIZ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PAPZIZ-09A-02D A32173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32173_1_lane_dupsFlagged.bam	SRR1344887	@dbgap@:reads/SRP012000/SRS628764/SRX574460/SRR1344887/SRR1344887.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZIZ-09A-02D_TARGET-20-PAPZIZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPZIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZIZ-14A-01D	DNA	EFO	SRS635727	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZIZ-14A-01D A42362 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42362	SRX593557	"Specific Capture analysis of normal sample TARGET-20-PAPZIZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPZIZ-14A-01D A42362 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42362_1_lane_dupsFlagged.bam	SRR1386092	@dbgap@:reads/SRP012000/SRS635727/SRX593557/SRR1386092/SRR1386092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZIZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZIZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPZIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPZIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZIZ-14A-01D	DNA	EFO	SRS635727	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZIZ-14A-01D A42362 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42362	SRX593557	"Specific Capture analysis of normal sample TARGET-20-PAPZIZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPZIZ-14A-01D A42362 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42362_1_lane_dupsFlagged.bam	SRR1386092	@dbgap@:reads/SRP012000/SRS635727/SRX593557/SRR1386092/SRR1386092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZIZ-09A-02D_TARGET-20-PAPZIZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPZIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZIZ-14A-01D	DNA	EFO	SRS635727	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZIZ-14A-01D A42362 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42362	SRX593557	"Specific Capture analysis of normal sample TARGET-20-PAPZIZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPZIZ-14A-01D A42362 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42362_1_lane_dupsFlagged.bam	SRR1386092	@dbgap@:reads/SRP012000/SRS635727/SRX593557/SRR1386092/SRR1386092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZIZ-09A-02D_TARGET-20-PAPZIZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZJT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZJT-03A-01D	DNA	EFO	SRS629142	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZJT-03A-01D A33274 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33274	SRX575198	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZJT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPZJT-03A-01D A33274 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33274_1_lane_dupsFlagged.bam	SRR1346450	@dbgap@:reads/SRP012000/SRS629142/SRX575198/SRR1346450/SRR1346450.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZJT-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZJT-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPZJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZJT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZJT-03A-01D	DNA	EFO	SRS629142	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZJT-03A-01D A33274 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33274	SRX575198	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZJT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPZJT-03A-01D A33274 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33274_1_lane_dupsFlagged.bam	SRR1346450	@dbgap@:reads/SRP012000/SRS629142/SRX575198/SRR1346450/SRR1346450.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZJT-03A-01D_TARGET-20-PAPZJT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZJT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZJT-03A-01D	DNA	EFO	SRS629142	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZJT-03A-01D A33274 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33274	SRX575198	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZJT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPZJT-03A-01D A33274 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33274_1_lane_dupsFlagged.bam	SRR1346450	@dbgap@:reads/SRP012000/SRS629142/SRX575198/SRR1346450/SRR1346450.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZJT-03A-01D_TARGET-20-PAPZJT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZJT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZJT-14A-01D	DNA	EFO	SRS637487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZJT-14A-01D A42917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42917	SRX597917	"Specific Capture analysis of normal sample TARGET-20-PAPZJT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPZJT-14A-01D A42917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42917_1_lane_dupsFlagged.bam	SRR1395141	@dbgap@:reads/SRP012000/SRS637487/SRX597917/SRR1395141/SRR1395141.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZJT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZJT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPZJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZJT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZJT-14A-01D	DNA	EFO	SRS637487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZJT-14A-01D A42917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42917	SRX597917	"Specific Capture analysis of normal sample TARGET-20-PAPZJT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPZJT-14A-01D A42917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42917_1_lane_dupsFlagged.bam	SRR1395141	@dbgap@:reads/SRP012000/SRS637487/SRX597917/SRR1395141/SRR1395141.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZJT-03A-01D_TARGET-20-PAPZJT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZJT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZJT-14A-01D	DNA	EFO	SRS637487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZJT-14A-01D A42917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42917	SRX597917	"Specific Capture analysis of normal sample TARGET-20-PAPZJT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPZJT-14A-01D A42917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42917_1_lane_dupsFlagged.bam	SRR1395141	@dbgap@:reads/SRP012000/SRS637487/SRX597917/SRR1395141/SRR1395141.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZJT-03A-01D_TARGET-20-PAPZJT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZJT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZJT-14A-01D	DNA	EFO	SRS637487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZJT-14A-01D A42917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42917	SRX597917	"Specific Capture analysis of normal sample TARGET-20-PAPZJT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPZJT-14A-01D A42917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42917_1_lane_dupsFlagged.bam	SRR1395141	@dbgap@:reads/SRP012000/SRS637487/SRX597917/SRR1395141/SRR1395141.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZJT-40A-01D_TARGET-20-PAPZJT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZJT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZJT-14A-01D	DNA	EFO	SRS637487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZJT-14A-01D A42917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42917	SRX597917	"Specific Capture analysis of normal sample TARGET-20-PAPZJT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAPZJT-14A-01D A42917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42917_1_lane_dupsFlagged.bam	SRR1395141	@dbgap@:reads/SRP012000/SRS637487/SRX597917/SRR1395141/SRR1395141.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZJT-40A-01D_TARGET-20-PAPZJT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZJT-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZJT-40A-01D	DNA	EFO	SRS637309	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZJT-40A-01D A42199 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42199	SRX597675	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZJT-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPZJT-40A-01D A42199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42199_1_lane_dupsFlagged.bam	SRR1395035	@dbgap@:reads/SRP012000/SRS637309/SRX597675/SRR1395035/SRR1395035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZJT-40A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZJT-40A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPZJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZJT-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZJT-40A-01D	DNA	EFO	SRS637309	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZJT-40A-01D A42199 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42199	SRX597675	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZJT-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPZJT-40A-01D A42199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42199_1_lane_dupsFlagged.bam	SRR1395035	@dbgap@:reads/SRP012000/SRS637309/SRX597675/SRR1395035/SRR1395035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZJT-40A-01D_TARGET-20-PAPZJT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZJT-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZJT-40A-01D	DNA	EFO	SRS637309	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZJT-40A-01D A42199 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42199	SRX597675	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZJT-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPZJT-40A-01D A42199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42199_1_lane_dupsFlagged.bam	SRR1395035	@dbgap@:reads/SRP012000/SRS637309/SRX597675/SRR1395035/SRR1395035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZJT-40A-01D_TARGET-20-PAPZJT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPZLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZLT-09A-02D	DNA	EFO	SRS628716	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZLT-09A-02D A32174 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32174	SRX574410	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZLT-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPZLT-09A-02D A32174 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32174_1_lane_dupsFlagged.bam	SRR1344880	@dbgap@:reads/SRP012000/SRS628716/SRX574410/SRR1344880/SRR1344880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZLT-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZLT-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPZTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZTC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZTC-09A-01D	DNA	EFO	SRS629120	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZTC-09A-01D A33276 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33276	SRX575176	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZTC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPZTC-09A-01D A33276 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33276_1_lane_dupsFlagged.bam	SRR1346444	@dbgap@:reads/SRP012000/SRS629120/SRX575176/SRR1346444/SRR1346444.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZTC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZTC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPZTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZTC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZTC-09A-01D	DNA	EFO	SRS629120	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZTC-09A-01D A33276 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33276	SRX575176	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZTC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPZTC-09A-01D A33276 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33276_1_lane_dupsFlagged.bam	SRR1346444	@dbgap@:reads/SRP012000/SRS629120/SRX575176/SRR1346444/SRR1346444.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZTC-09A-01D_TARGET-20-PAPZTC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZTC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZTC-09A-01D	DNA	EFO	SRS629120	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZTC-09A-01D A33276 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33276	SRX575176	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZTC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPZTC-09A-01D A33276 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33276_1_lane_dupsFlagged.bam	SRR1346444	@dbgap@:reads/SRP012000/SRS629120/SRX575176/SRR1346444/SRR1346444.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZTC-09A-01D_TARGET-20-PAPZTC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZTC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZTC-14A-01D	DNA	EFO	SRS635742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZTC-14A-01D A42337 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42337	SRX593573	"Specific Capture analysis of normal sample TARGET-20-PAPZTC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPZTC-14A-01D A42337 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42337_1_lane_dupsFlagged.bam	SRR1386058	@dbgap@:reads/SRP012000/SRS635742/SRX593573/SRR1386058/SRR1386058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZTC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZTC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPZTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZTC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZTC-14A-01D	DNA	EFO	SRS635742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZTC-14A-01D A42337 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42337	SRX593573	"Specific Capture analysis of normal sample TARGET-20-PAPZTC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPZTC-14A-01D A42337 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42337_1_lane_dupsFlagged.bam	SRR1386058	@dbgap@:reads/SRP012000/SRS635742/SRX593573/SRR1386058/SRR1386058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZTC-09A-01D_TARGET-20-PAPZTC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZTC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZTC-14A-01D	DNA	EFO	SRS635742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZTC-14A-01D A42337 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42337	SRX593573	"Specific Capture analysis of normal sample TARGET-20-PAPZTC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAPZTC-14A-01D A42337 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42337_1_lane_dupsFlagged.bam	SRR1386058	@dbgap@:reads/SRP012000/SRS635742/SRX593573/SRR1386058/SRR1386058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZTC-09A-01D_TARGET-20-PAPZTC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZTU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZTU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZTU-09A-01D	DNA	EFO	SRS635486	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZTU-09A-01D A41725 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41725	SRX593208	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZTU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPZTU-09A-01D A41725 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41725_1_lane_dupsFlagged.bam	SRR1385614	@dbgap@:reads/SRP012000/SRS635486/SRX593208/SRR1385614/SRR1385614.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZTU-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZTU-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPZXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZXN-09A-01D	DNA	EFO	SRS633934	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZXN-09A-01D A41442 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41442	SRX588539	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZXN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPZXN-09A-01D A41442 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41442_1_lane_dupsFlagged.bam	SRR1374889	@dbgap@:reads/SRP012000/SRS633934/SRX588539/SRR1374889/SRR1374889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZXN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZXN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPZXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZXN-09A-01D	DNA	EFO	SRS633934	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZXN-09A-01D A41442 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41442	SRX588539	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZXN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPZXN-09A-01D A41442 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41442_1_lane_dupsFlagged.bam	SRR1374889	@dbgap@:reads/SRP012000/SRS633934/SRX588539/SRR1374889/SRR1374889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZXN-09A-01D_TARGET-20-PAPZXN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZXN-09A-01D	DNA	EFO	SRS633934	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZXN-09A-01D A41442 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41442	SRX588539	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZXN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPZXN-09A-01D A41442 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41442_1_lane_dupsFlagged.bam	SRR1374889	@dbgap@:reads/SRP012000/SRS633934/SRX588539/SRR1374889/SRR1374889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZXN-09A-01D_TARGET-20-PAPZXN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZXN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZXN-14A-01D	DNA	EFO	SRS635755	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZXN-14A-01D A42326 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42326	SRX593591	"Specific Capture analysis of normal sample TARGET-20-PAPZXN-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPZXN-14A-01D A42326 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42326_1_lane_dupsFlagged.bam	SRR1386029	@dbgap@:reads/SRP012000/SRS635755/SRX593591/SRR1386029/SRR1386029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZXN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZXN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPZXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZXN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZXN-14A-01D	DNA	EFO	SRS635755	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZXN-14A-01D A42326 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42326	SRX593591	"Specific Capture analysis of normal sample TARGET-20-PAPZXN-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPZXN-14A-01D A42326 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42326_1_lane_dupsFlagged.bam	SRR1386029	@dbgap@:reads/SRP012000/SRS635755/SRX593591/SRR1386029/SRR1386029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZXN-09A-01D_TARGET-20-PAPZXN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZXN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZXN-14A-01D	DNA	EFO	SRS635755	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZXN-14A-01D A42326 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42326	SRX593591	"Specific Capture analysis of normal sample TARGET-20-PAPZXN-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPZXN-14A-01D A42326 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42326_1_lane_dupsFlagged.bam	SRR1386029	@dbgap@:reads/SRP012000/SRS635755/SRX593591/SRR1386029/SRR1386029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZXN-09A-01D_TARGET-20-PAPZXN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZYJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZYJ-09A-01D	DNA	EFO	SRS633973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZYJ-09A-01D A41444 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41444	SRX588579	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZYJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPZYJ-09A-01D A41444 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41444_1_lane_dupsFlagged.bam	SRR1374878	@dbgap@:reads/SRP012000/SRS633973/SRX588579/SRR1374878/SRR1374878.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZYJ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZYJ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPZYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZYJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZYJ-09A-01D	DNA	EFO	SRS633973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZYJ-09A-01D A41444 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41444	SRX588579	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZYJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPZYJ-09A-01D A41444 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41444_1_lane_dupsFlagged.bam	SRR1374878	@dbgap@:reads/SRP012000/SRS633973/SRX588579/SRR1374878/SRR1374878.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZYJ-09A-01D_TARGET-20-PAPZYJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZYJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZYJ-09A-01D	DNA	EFO	SRS633973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZYJ-09A-01D A41444 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41444	SRX588579	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZYJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPZYJ-09A-01D A41444 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41444_1_lane_dupsFlagged.bam	SRR1374878	@dbgap@:reads/SRP012000/SRS633973/SRX588579/SRR1374878/SRR1374878.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZYJ-09A-01D_TARGET-20-PAPZYJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZYJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZYJ-14A-01D	DNA	EFO	SRS635730	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZYJ-14A-01D A42312 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42312	SRX593558	"Specific Capture analysis of normal sample TARGET-20-PAPZYJ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPZYJ-14A-01D A42312 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42312_1_lane_dupsFlagged.bam	SRR1386096	@dbgap@:reads/SRP012000/SRS635730/SRX593558/SRR1386096/SRR1386096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZYJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZYJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPZYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZYJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZYJ-14A-01D	DNA	EFO	SRS635730	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZYJ-14A-01D A42312 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42312	SRX593558	"Specific Capture analysis of normal sample TARGET-20-PAPZYJ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPZYJ-14A-01D A42312 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42312_1_lane_dupsFlagged.bam	SRR1386096	@dbgap@:reads/SRP012000/SRS635730/SRX593558/SRR1386096/SRR1386096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZYJ-09A-01D_TARGET-20-PAPZYJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZYJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZYJ-14A-01D	DNA	EFO	SRS635730	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZYJ-14A-01D A42312 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42312	SRX593558	"Specific Capture analysis of normal sample TARGET-20-PAPZYJ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPZYJ-14A-01D A42312 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42312_1_lane_dupsFlagged.bam	SRR1386096	@dbgap@:reads/SRP012000/SRS635730/SRX593558/SRR1386096/SRR1386096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZYJ-09A-01D_TARGET-20-PAPZYJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZYS-09A-01D	DNA	EFO	SRS629134	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZYS-09A-01D A33277 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33277	SRX575191	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZYS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPZYS-09A-01D A33277 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33277_1_lane_dupsFlagged.bam	SRR1346470	@dbgap@:reads/SRP012000/SRS629134/SRX575191/SRR1346470/SRR1346470.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZYS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZYS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAPZYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZYS-09A-01D	DNA	EFO	SRS629134	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZYS-09A-01D A33277 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33277	SRX575191	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZYS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPZYS-09A-01D A33277 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33277_1_lane_dupsFlagged.bam	SRR1346470	@dbgap@:reads/SRP012000/SRS629134/SRX575191/SRR1346470/SRR1346470.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZYS-09A-01D_TARGET-20-PAPZYS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZYS-09A-01D	DNA	EFO	SRS629134	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZYS-09A-01D A33277 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33277	SRX575191	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZYS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAPZYS-09A-01D A33277 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33277_1_lane_dupsFlagged.bam	SRR1346470	@dbgap@:reads/SRP012000/SRS629134/SRX575191/SRR1346470/SRR1346470.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZYS-09A-01D_TARGET-20-PAPZYS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZYS-14A-01D	DNA	EFO	SRS635769	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZYS-14A-01D A42311 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42311	SRX593606	"Specific Capture analysis of normal sample TARGET-20-PAPZYS-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPZYS-14A-01D A42311 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42311_1_lane_dupsFlagged.bam	SRR1386051	@dbgap@:reads/SRP012000/SRS635769/SRX593606/SRR1386051/SRR1386051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZYS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZYS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAPZYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZYS-14A-01D	DNA	EFO	SRS635769	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZYS-14A-01D A42311 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42311	SRX593606	"Specific Capture analysis of normal sample TARGET-20-PAPZYS-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPZYS-14A-01D A42311 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42311_1_lane_dupsFlagged.bam	SRR1386051	@dbgap@:reads/SRP012000/SRS635769/SRX593606/SRR1386051/SRR1386051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZYS-09A-01D_TARGET-20-PAPZYS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAPZYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZYS-14A-01D	DNA	EFO	SRS635769	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZYS-14A-01D A42311 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42311	SRX593606	"Specific Capture analysis of normal sample TARGET-20-PAPZYS-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PAPZYS-14A-01D A42311 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42311_1_lane_dupsFlagged.bam	SRR1386051	@dbgap@:reads/SRP012000/SRS635769/SRX593606/SRR1386051/SRR1386051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAPZYS-09A-01D_TARGET-20-PAPZYS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAPZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAPZZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZZE-09A-01D	DNA	EFO	SRS633962	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZZE-09A-01D A41443 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41443	SRX588568	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPZZE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAPZZE-09A-01D A41443 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41443_1_lane_dupsFlagged.bam	SRR1374854	@dbgap@:reads/SRP012000/SRS633962/SRX588568/SRR1374854/SRR1374854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAPZZE-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAPZZE-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARAEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAEF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAEF-09A-01D	DNA	EFO	SRS635490	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAEF-09A-01D A41722 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41722	SRX593211	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARAEF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARAEF-09A-01D A41722 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41722_1_lane_dupsFlagged.bam	SRR1385624	@dbgap@:reads/SRP012000/SRS635490/SRX593211/SRR1385624/SRR1385624.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARAEF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARAEF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARAEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAEF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAEF-09A-01D	DNA	EFO	SRS635490	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAEF-09A-01D A41722 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41722	SRX593211	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARAEF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARAEF-09A-01D A41722 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41722_1_lane_dupsFlagged.bam	SRR1385624	@dbgap@:reads/SRP012000/SRS635490/SRX593211/SRR1385624/SRR1385624.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAEF-09A-01D_TARGET-20-PARAEF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARAEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAEF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAEF-09A-01D	DNA	EFO	SRS635490	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAEF-09A-01D A41722 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41722	SRX593211	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARAEF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARAEF-09A-01D A41722 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41722_1_lane_dupsFlagged.bam	SRR1385624	@dbgap@:reads/SRP012000/SRS635490/SRX593211/SRR1385624/SRR1385624.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAEF-09A-01D_TARGET-20-PARAEF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARAEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAEF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAEF-14A-01D	DNA	EFO	SRS635688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAEF-14A-01D A41660 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41660	SRX593511	"Specific Capture analysis of normal sample TARGET-20-PARAEF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARAEF-14A-01D A41660 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41660_1_lane_dupsFlagged.bam	SRR1385966	@dbgap@:reads/SRP012000/SRS635688/SRX593511/SRR1385966/SRR1385966.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARAEF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARAEF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARAEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAEF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAEF-14A-01D	DNA	EFO	SRS635688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAEF-14A-01D A41660 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41660	SRX593511	"Specific Capture analysis of normal sample TARGET-20-PARAEF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARAEF-14A-01D A41660 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41660_1_lane_dupsFlagged.bam	SRR1385966	@dbgap@:reads/SRP012000/SRS635688/SRX593511/SRR1385966/SRR1385966.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAEF-09A-01D_TARGET-20-PARAEF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARAEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAEF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAEF-14A-01D	DNA	EFO	SRS635688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAEF-14A-01D A41660 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41660	SRX593511	"Specific Capture analysis of normal sample TARGET-20-PARAEF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARAEF-14A-01D A41660 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41660_1_lane_dupsFlagged.bam	SRR1385966	@dbgap@:reads/SRP012000/SRS635688/SRX593511/SRR1385966/SRR1385966.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAEF-09A-01D_TARGET-20-PARAEF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAEG-09A-01D	DNA	EFO	SRS633908	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAEG-09A-01D A41445 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41445	SRX588513	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARAEG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARAEG-09A-01D A41445 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41445_1_lane_dupsFlagged.bam	SRR1374843	@dbgap@:reads/SRP012000/SRS633908/SRX588513/SRR1374843/SRR1374843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARAEG-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARAEG-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAEG-09A-01D	DNA	EFO	SRS633908	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAEG-09A-01D A41445 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41445	SRX588513	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARAEG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARAEG-09A-01D A41445 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41445_1_lane_dupsFlagged.bam	SRR1374843	@dbgap@:reads/SRP012000/SRS633908/SRX588513/SRR1374843/SRR1374843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAEG-09A-01D_TARGET-20-PARAEG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAEG-09A-01D	DNA	EFO	SRS633908	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAEG-09A-01D A41445 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41445	SRX588513	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARAEG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARAEG-09A-01D A41445 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41445_1_lane_dupsFlagged.bam	SRR1374843	@dbgap@:reads/SRP012000/SRS633908/SRX588513/SRR1374843/SRR1374843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAEG-09A-01D_TARGET-20-PARAEG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAEG-14A-01D	DNA	EFO	SRS637494	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAEG-14A-01D A42887 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42887	SRX597925	"Specific Capture analysis of normal sample TARGET-20-PARAEG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARAEG-14A-01D A42887 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42887_1_lane_dupsFlagged.bam	SRR1395206	@dbgap@:reads/SRP012000/SRS637494/SRX597925/SRR1395206/SRR1395206.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARAEG-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARAEG-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAEG-14A-01D	DNA	EFO	SRS637494	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAEG-14A-01D A42887 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42887	SRX597925	"Specific Capture analysis of normal sample TARGET-20-PARAEG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARAEG-14A-01D A42887 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42887_1_lane_dupsFlagged.bam	SRR1395206	@dbgap@:reads/SRP012000/SRS637494/SRX597925/SRR1395206/SRR1395206.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAEG-09A-01D_TARGET-20-PARAEG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAEG-14A-01D	DNA	EFO	SRS637494	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAEG-14A-01D A42887 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42887	SRX597925	"Specific Capture analysis of normal sample TARGET-20-PARAEG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARAEG-14A-01D A42887 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42887_1_lane_dupsFlagged.bam	SRR1395206	@dbgap@:reads/SRP012000/SRS637494/SRX597925/SRR1395206/SRR1395206.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAEG-09A-01D_TARGET-20-PARAEG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARAFA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAFA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAFA-09A-01D	DNA	EFO	SRS635623	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAFA-09A-01D A41908 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41908	SRX593445	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARAFA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARAFA-09A-01D A41908 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41908_1_lane_dupsFlagged.bam	SRR1385888	@dbgap@:reads/SRP012000/SRS635623/SRX593445/SRR1385888/SRR1385888.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARAFA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARAFA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARAFA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAFA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAFA-09A-01D	DNA	EFO	SRS635623	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAFA-09A-01D A41908 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41908	SRX593445	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARAFA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARAFA-09A-01D A41908 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41908_1_lane_dupsFlagged.bam	SRR1385888	@dbgap@:reads/SRP012000/SRS635623/SRX593445/SRR1385888/SRR1385888.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAFA-09A-01D_TARGET-20-PARAFA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARAFA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAFA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAFA-09A-01D	DNA	EFO	SRS635623	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAFA-09A-01D A41908 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41908	SRX593445	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARAFA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARAFA-09A-01D A41908 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41908_1_lane_dupsFlagged.bam	SRR1385888	@dbgap@:reads/SRP012000/SRS635623/SRX593445/SRR1385888/SRR1385888.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAFA-09A-01D_TARGET-20-PARAFA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARAFA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAFA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAFA-14A-01D	DNA	EFO	SRS637410	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAFA-14A-01D A42777 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42777	SRX597817	"Specific Capture analysis of normal sample TARGET-20-PARAFA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARAFA-14A-01D A42777 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42777_1_lane_dupsFlagged.bam	SRR1395109	@dbgap@:reads/SRP012000/SRS637410/SRX597817/SRR1395109/SRR1395109.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARAFA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARAFA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARAFA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAFA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAFA-14A-01D	DNA	EFO	SRS637410	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAFA-14A-01D A42777 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42777	SRX597817	"Specific Capture analysis of normal sample TARGET-20-PARAFA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARAFA-14A-01D A42777 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42777_1_lane_dupsFlagged.bam	SRR1395109	@dbgap@:reads/SRP012000/SRS637410/SRX597817/SRR1395109/SRR1395109.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAFA-09A-01D_TARGET-20-PARAFA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARAFA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAFA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAFA-14A-01D	DNA	EFO	SRS637410	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAFA-14A-01D A42777 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42777	SRX597817	"Specific Capture analysis of normal sample TARGET-20-PARAFA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARAFA-14A-01D A42777 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42777_1_lane_dupsFlagged.bam	SRR1395109	@dbgap@:reads/SRP012000/SRS637410/SRX597817/SRR1395109/SRR1395109.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAFA-09A-01D_TARGET-20-PARAFA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01D	DNA	EFO	SRS628287	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAHF-09A-01D A31272 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31272	SRX573344	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARAHF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARAHF-09A-01D A31272 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31272_1_lane_dupsFlagged.bam	SRR1342684	@dbgap@:reads/SRP012000/SRS628287/SRX573344/SRR1342684/SRR1342684.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARAHF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARAHF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01D	DNA	EFO	SRS628287	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAHF-09A-01D A31272 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31272	SRX573344	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARAHF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARAHF-09A-01D A31272 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31272_1_lane_dupsFlagged.bam	SRR1342684	@dbgap@:reads/SRP012000/SRS628287/SRX573344/SRR1342684/SRR1342684.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAHF-09A-01D_TARGET-20-PARAHF-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01D	DNA	EFO	SRS628287	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAHF-09A-01D A31272 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31272	SRX573344	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARAHF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARAHF-09A-01D A31272 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31272_1_lane_dupsFlagged.bam	SRR1342684	@dbgap@:reads/SRP012000/SRS628287/SRX573344/SRR1342684/SRR1342684.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAHF-09A-01D_TARGET-20-PARAHF-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-14A-03D	DNA	EFO	SRS301074	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAHF-14A-03D A41661 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41661	SRX593464	"Specific Capture analysis of normal sample TARGET-20-PARAHF-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARAHF-14A-03D A41661 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41661_1_lane_dupsFlagged.bam	SRR1385958	@dbgap@:reads/SRP012000/SRS301074/SRX593464/SRR1385958/SRR1385958.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARAHF-14A-03D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARAHF-14A-03D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-14A-03D	DNA	EFO	SRS301074	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAHF-14A-03D A41661 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41661	SRX593464	"Specific Capture analysis of normal sample TARGET-20-PARAHF-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARAHF-14A-03D A41661 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41661_1_lane_dupsFlagged.bam	SRR1385958	@dbgap@:reads/SRP012000/SRS301074/SRX593464/SRR1385958/SRR1385958.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAHF-09A-01D_TARGET-20-PARAHF-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-14A-03D	DNA	EFO	SRS301074	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAHF-14A-03D A41661 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41661	SRX593464	"Specific Capture analysis of normal sample TARGET-20-PARAHF-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARAHF-14A-03D A41661 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41661_1_lane_dupsFlagged.bam	SRR1385958	@dbgap@:reads/SRP012000/SRS301074/SRX593464/SRR1385958/SRR1385958.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAHF-09A-01D_TARGET-20-PARAHF-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARAIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAIC-09A-01D	DNA	EFO	SRS629170	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAIC-09A-01D A33278 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33278	SRX575226	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARAIC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARAIC-09A-01D A33278 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33278_1_lane_dupsFlagged.bam	SRR1346502	@dbgap@:reads/SRP012000/SRS629170/SRX575226/SRR1346502/SRR1346502.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARAIC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARAIC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-03D	DNA	EFO	SRS628923	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAJX-09A-03D A32317 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32317	SRX574979	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARAJX-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARAJX-09A-03D A32317 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32317_1_lane_dupsFlagged.bam	SRR1346145	@dbgap@:reads/SRP012000/SRS628923/SRX574979/SRR1346145/SRR1346145.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARAJX-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARAJX-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-03D	DNA	EFO	SRS628696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARANT-09A-03D A32175 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32175	SRX574389	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARANT-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARANT-09A-03D A32175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32175_1_lane_dupsFlagged.bam	SRR1344882	@dbgap@:reads/SRP012000/SRS628696/SRX574389/SRR1344882/SRR1344882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARANT-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARANT-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-03D	DNA	EFO	SRS628696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARANT-09A-03D A32175 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32175	SRX574389	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARANT-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARANT-09A-03D A32175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32175_1_lane_dupsFlagged.bam	SRR1344882	@dbgap@:reads/SRP012000/SRS628696/SRX574389/SRR1344882/SRR1344882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARANT-09A-03D_TARGET-20-PARANT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-03D	DNA	EFO	SRS628696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARANT-09A-03D A32175 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32175	SRX574389	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARANT-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARANT-09A-03D A32175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32175_1_lane_dupsFlagged.bam	SRR1344882	@dbgap@:reads/SRP012000/SRS628696/SRX574389/SRR1344882/SRR1344882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARANT-09A-03D_TARGET-20-PARANT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-14A-01D	DNA	EFO	SRS301078	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARANT-14A-01D A42606 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42606	SRX594005	"Specific Capture analysis of normal sample TARGET-20-PARANT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARANT-14A-01D A42606 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42606_1_lane_dupsFlagged.bam	SRR1386450	@dbgap@:reads/SRP012000/SRS301078/SRX594005/SRR1386450/SRR1386450.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARANT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARANT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-14A-01D	DNA	EFO	SRS301078	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARANT-14A-01D A42606 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42606	SRX594005	"Specific Capture analysis of normal sample TARGET-20-PARANT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARANT-14A-01D A42606 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42606_1_lane_dupsFlagged.bam	SRR1386450	@dbgap@:reads/SRP012000/SRS301078/SRX594005/SRR1386450/SRR1386450.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARANT-09A-03D_TARGET-20-PARANT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-14A-01D	DNA	EFO	SRS301078	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARANT-14A-01D A42606 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42606	SRX594005	"Specific Capture analysis of normal sample TARGET-20-PARANT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARANT-14A-01D A42606 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42606_1_lane_dupsFlagged.bam	SRR1386450	@dbgap@:reads/SRP012000/SRS301078/SRX594005/SRR1386450/SRR1386450.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARANT-09A-03D_TARGET-20-PARANT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-02D	DNA	EFO	SRS628972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARASV-03A-02D A32318 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32318	SRX575029	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARASV-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARASV-03A-02D A32318 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32318_1_lane_dupsFlagged.bam	SRR1346189	@dbgap@:reads/SRP012000/SRS628972/SRX575029/SRR1346189/SRR1346189.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARASV-03A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARASV-03A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-02D	DNA	EFO	SRS628972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARASV-03A-02D A32318 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32318	SRX575029	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARASV-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARASV-03A-02D A32318 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32318_1_lane_dupsFlagged.bam	SRR1346189	@dbgap@:reads/SRP012000/SRS628972/SRX575029/SRR1346189/SRR1346189.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARASV-03A-02D_TARGET-20-PARASV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-02D	DNA	EFO	SRS628972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARASV-03A-02D A32318 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32318	SRX575029	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARASV-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARASV-03A-02D A32318 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32318_1_lane_dupsFlagged.bam	SRR1346189	@dbgap@:reads/SRP012000/SRS628972/SRX575029/SRR1346189/SRR1346189.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARASV-03A-02D_TARGET-20-PARASV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-04A-02D	DNA	EFO	SRS270685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARASV-04A-02D A42211 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42211	SRX597755	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARASV-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARASV-04A-02D A42211 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42211_1_lane_dupsFlagged.bam	SRR1394980	@dbgap@:reads/SRP012000/SRS270685/SRX597755/SRR1394980/SRR1394980.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARASV-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARASV-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-04A-02D	DNA	EFO	SRS270685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARASV-04A-02D A42211 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42211	SRX597755	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARASV-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARASV-04A-02D A42211 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42211_1_lane_dupsFlagged.bam	SRR1394980	@dbgap@:reads/SRP012000/SRS270685/SRX597755/SRR1394980/SRR1394980.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARASV-04A-02D_TARGET-20-PARASV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-04A-02D	DNA	EFO	SRS270685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARASV-04A-02D A42211 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42211	SRX597755	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARASV-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARASV-04A-02D A42211 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42211_1_lane_dupsFlagged.bam	SRR1394980	@dbgap@:reads/SRP012000/SRS270685/SRX597755/SRR1394980/SRR1394980.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARASV-04A-02D_TARGET-20-PARASV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARASV-14A-01D A42363 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42363	SRX593585	"Specific Capture analysis of normal sample TARGET-20-PARASV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARASV-14A-01D A42363 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42363_1_lane_dupsFlagged.bam	SRR1386045	@dbgap@:reads/SRP012000/SRS270686/SRX593585/SRR1386045/SRR1386045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARASV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARASV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARASV-14A-01D A42363 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42363	SRX593585	"Specific Capture analysis of normal sample TARGET-20-PARASV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARASV-14A-01D A42363 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42363_1_lane_dupsFlagged.bam	SRR1386045	@dbgap@:reads/SRP012000/SRS270686/SRX593585/SRR1386045/SRR1386045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARASV-03A-02D_TARGET-20-PARASV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARASV-14A-01D A42363 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42363	SRX593585	"Specific Capture analysis of normal sample TARGET-20-PARASV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARASV-14A-01D A42363 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42363_1_lane_dupsFlagged.bam	SRR1386045	@dbgap@:reads/SRP012000/SRS270686/SRX593585/SRR1386045/SRR1386045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARASV-03A-02D_TARGET-20-PARASV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARASV-14A-01D A42363 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42363	SRX593585	"Specific Capture analysis of normal sample TARGET-20-PARASV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARASV-14A-01D A42363 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42363_1_lane_dupsFlagged.bam	SRR1386045	@dbgap@:reads/SRP012000/SRS270686/SRX593585/SRR1386045/SRR1386045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARASV-04A-02D_TARGET-20-PARASV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-14A-01D	DNA	EFO	SRS270686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARASV-14A-01D A42363 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42363	SRX593585	"Specific Capture analysis of normal sample TARGET-20-PARASV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARASV-14A-01D A42363 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42363_1_lane_dupsFlagged.bam	SRR1386045	@dbgap@:reads/SRP012000/SRS270686/SRX593585/SRR1386045/SRR1386045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARASV-04A-02D_TARGET-20-PARASV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARAUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAUM-09A-01D	DNA	EFO	SRS635439	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAUM-09A-01D A41729 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41729	SRX593161	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARAUM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARAUM-09A-01D A41729 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41729_1_lane_dupsFlagged.bam	SRR1385670	@dbgap@:reads/SRP012000/SRS635439/SRX593161/SRR1385670/SRR1385670.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARAUM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARAUM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARAUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAUM-09A-01D	DNA	EFO	SRS635439	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAUM-09A-01D A41729 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41729	SRX593161	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARAUM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARAUM-09A-01D A41729 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41729_1_lane_dupsFlagged.bam	SRR1385670	@dbgap@:reads/SRP012000/SRS635439/SRX593161/SRR1385670/SRR1385670.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAUM-09A-01D_TARGET-20-PARAUM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARAUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAUM-09A-01D	DNA	EFO	SRS635439	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAUM-09A-01D A41729 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41729	SRX593161	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARAUM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARAUM-09A-01D A41729 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41729_1_lane_dupsFlagged.bam	SRR1385670	@dbgap@:reads/SRP012000/SRS635439/SRX593161/SRR1385670/SRR1385670.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAUM-09A-01D_TARGET-20-PARAUM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARAUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAUM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAUM-14A-01D	DNA	EFO	SRS634721	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAUM-14A-01D A41535 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41535	SRX590829	"Specific Capture analysis of normal sample TARGET-20-PARAUM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARAUM-14A-01D A41535 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41535_1_lane_dupsFlagged.bam	SRR1379858	@dbgap@:reads/SRP012000/SRS634721/SRX590829/SRR1379858/SRR1379858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARAUM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARAUM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARAUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAUM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAUM-14A-01D	DNA	EFO	SRS634721	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAUM-14A-01D A41535 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41535	SRX590829	"Specific Capture analysis of normal sample TARGET-20-PARAUM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARAUM-14A-01D A41535 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41535_1_lane_dupsFlagged.bam	SRR1379858	@dbgap@:reads/SRP012000/SRS634721/SRX590829/SRR1379858/SRR1379858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAUM-09A-01D_TARGET-20-PARAUM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARAUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARAUM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAUM-14A-01D	DNA	EFO	SRS634721	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAUM-14A-01D A41535 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41535	SRX590829	"Specific Capture analysis of normal sample TARGET-20-PARAUM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARAUM-14A-01D A41535 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41535_1_lane_dupsFlagged.bam	SRR1379858	@dbgap@:reads/SRP012000/SRS634721/SRX590829/SRR1379858/SRR1379858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARAUM-09A-01D_TARGET-20-PARAUM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBCV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBCV-09A-01D	DNA	EFO	SRS633961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBCV-09A-01D A41446 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41446	SRX588566	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBCV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARBCV-09A-01D A41446 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41446_1_lane_dupsFlagged.bam	SRR1374908	@dbgap@:reads/SRP012000/SRS633961/SRX588566/SRR1374908/SRR1374908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBCV-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBCV-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARBCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBCV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBCV-09A-01D	DNA	EFO	SRS633961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBCV-09A-01D A41446 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41446	SRX588566	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBCV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARBCV-09A-01D A41446 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41446_1_lane_dupsFlagged.bam	SRR1374908	@dbgap@:reads/SRP012000/SRS633961/SRX588566/SRR1374908/SRR1374908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBCV-09A-01D_TARGET-20-PARBCV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBCV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBCV-09A-01D	DNA	EFO	SRS633961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBCV-09A-01D A41446 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41446	SRX588566	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBCV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARBCV-09A-01D A41446 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41446_1_lane_dupsFlagged.bam	SRR1374908	@dbgap@:reads/SRP012000/SRS633961/SRX588566/SRR1374908/SRR1374908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBCV-09A-01D_TARGET-20-PARBCV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBCV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBCV-14A-01D	DNA	EFO	SRS637421	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBCV-14A-01D A42778 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42778	SRX597830	"Specific Capture analysis of normal sample TARGET-20-PARBCV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARBCV-14A-01D A42778 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42778_1_lane_dupsFlagged.bam	SRR1395110	@dbgap@:reads/SRP012000/SRS637421/SRX597830/SRR1395110/SRR1395110.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBCV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBCV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARBCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBCV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBCV-14A-01D	DNA	EFO	SRS637421	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBCV-14A-01D A42778 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42778	SRX597830	"Specific Capture analysis of normal sample TARGET-20-PARBCV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARBCV-14A-01D A42778 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42778_1_lane_dupsFlagged.bam	SRR1395110	@dbgap@:reads/SRP012000/SRS637421/SRX597830/SRR1395110/SRR1395110.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBCV-09A-01D_TARGET-20-PARBCV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBCV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBCV-14A-01D	DNA	EFO	SRS637421	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBCV-14A-01D A42778 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42778	SRX597830	"Specific Capture analysis of normal sample TARGET-20-PARBCV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARBCV-14A-01D A42778 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42778_1_lane_dupsFlagged.bam	SRR1395110	@dbgap@:reads/SRP012000/SRS637421/SRX597830/SRR1395110/SRR1395110.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBCV-09A-01D_TARGET-20-PARBCV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBEL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBEL-09A-01D	DNA	EFO	SRS629164	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBEL-09A-01D A33279 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33279	SRX575221	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBEL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARBEL-09A-01D A33279 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33279_1_lane_dupsFlagged.bam	SRR1346483	@dbgap@:reads/SRP012000/SRS629164/SRX575221/SRR1346483/SRR1346483.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBEL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBEL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARBEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBEL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBEL-09A-01D	DNA	EFO	SRS629164	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBEL-09A-01D A33279 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33279	SRX575221	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBEL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARBEL-09A-01D A33279 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33279_1_lane_dupsFlagged.bam	SRR1346483	@dbgap@:reads/SRP012000/SRS629164/SRX575221/SRR1346483/SRR1346483.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBEL-09A-01D_TARGET-20-PARBEL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBEL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBEL-09A-01D	DNA	EFO	SRS629164	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBEL-09A-01D A33279 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33279	SRX575221	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBEL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARBEL-09A-01D A33279 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33279_1_lane_dupsFlagged.bam	SRR1346483	@dbgap@:reads/SRP012000/SRS629164/SRX575221/SRR1346483/SRR1346483.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBEL-09A-01D_TARGET-20-PARBEL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBEL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBEL-14A-01D	DNA	EFO	SRS635906	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBEL-14A-01D A42526 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42526	SRX593866	"Specific Capture analysis of normal sample TARGET-20-PARBEL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARBEL-14A-01D A42526 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42526_1_lane_dupsFlagged.bam	SRR1386393	@dbgap@:reads/SRP012000/SRS635906/SRX593866/SRR1386393/SRR1386393.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBEL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBEL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARBEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBEL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBEL-14A-01D	DNA	EFO	SRS635906	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBEL-14A-01D A42526 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42526	SRX593866	"Specific Capture analysis of normal sample TARGET-20-PARBEL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARBEL-14A-01D A42526 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42526_1_lane_dupsFlagged.bam	SRR1386393	@dbgap@:reads/SRP012000/SRS635906/SRX593866/SRR1386393/SRR1386393.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBEL-09A-01D_TARGET-20-PARBEL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBEL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBEL-14A-01D	DNA	EFO	SRS635906	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBEL-14A-01D A42526 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42526	SRX593866	"Specific Capture analysis of normal sample TARGET-20-PARBEL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARBEL-14A-01D A42526 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42526_1_lane_dupsFlagged.bam	SRR1386393	@dbgap@:reads/SRP012000/SRS635906/SRX593866/SRR1386393/SRR1386393.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBEL-09A-01D_TARGET-20-PARBEL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-03D	DNA	EFO	SRS628687	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBFJ-09A-03D A32176 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32176	SRX574380	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBFJ-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARBFJ-09A-03D A32176 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32176_1_lane_dupsFlagged.bam	SRR1344904	@dbgap@:reads/SRP012000/SRS628687/SRX574380/SRR1344904/SRR1344904.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBFJ-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBFJ-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARBFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFZ-03A-01D	DNA	EFO	SRS628301	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBFZ-03A-01D A31188 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31188	SRX573365	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBFZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARBFZ-03A-01D A31188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31188_1_lane_dupsFlagged.bam	SRR1342632	@dbgap@:reads/SRP012000/SRS628301/SRX573365/SRR1342632/SRR1342632.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBFZ-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBFZ-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARBFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFZ-03A-01D	DNA	EFO	SRS628301	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBFZ-03A-01D A31188 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31188	SRX573365	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBFZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARBFZ-03A-01D A31188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31188_1_lane_dupsFlagged.bam	SRR1342632	@dbgap@:reads/SRP012000/SRS628301/SRX573365/SRR1342632/SRR1342632.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBFZ-03A-01D_TARGET-20-PARBFZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFZ-03A-01D	DNA	EFO	SRS628301	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBFZ-03A-01D A31188 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31188	SRX573365	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBFZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARBFZ-03A-01D A31188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31188_1_lane_dupsFlagged.bam	SRR1342632	@dbgap@:reads/SRP012000/SRS628301/SRX573365/SRR1342632/SRR1342632.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBFZ-03A-01D_TARGET-20-PARBFZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFZ-14A-01D	DNA	EFO	SRS635965	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBFZ-14A-01D A42644 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42644	SRX593926	"Specific Capture analysis of normal sample TARGET-20-PARBFZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARBFZ-14A-01D A42644 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42644_1_lane_dupsFlagged.bam	SRR1386452	@dbgap@:reads/SRP012000/SRS635965/SRX593926/SRR1386452/SRR1386452.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBFZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBFZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARBFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFZ-14A-01D	DNA	EFO	SRS635965	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBFZ-14A-01D A42644 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42644	SRX593926	"Specific Capture analysis of normal sample TARGET-20-PARBFZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARBFZ-14A-01D A42644 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42644_1_lane_dupsFlagged.bam	SRR1386452	@dbgap@:reads/SRP012000/SRS635965/SRX593926/SRR1386452/SRR1386452.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBFZ-03A-01D_TARGET-20-PARBFZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFZ-14A-01D	DNA	EFO	SRS635965	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBFZ-14A-01D A42644 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42644	SRX593926	"Specific Capture analysis of normal sample TARGET-20-PARBFZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARBFZ-14A-01D A42644 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42644_1_lane_dupsFlagged.bam	SRR1386452	@dbgap@:reads/SRP012000/SRS635965/SRX593926/SRR1386452/SRR1386452.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBFZ-03A-01D_TARGET-20-PARBFZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBGF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBGF-09A-01D	DNA	EFO	SRS633920	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBGF-09A-01D A41447 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41447	SRX588525	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBGF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARBGF-09A-01D A41447 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41447_1_lane_dupsFlagged.bam	SRR1374909	@dbgap@:reads/SRP012000/SRS633920/SRX588525/SRR1374909/SRR1374909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBGF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBGF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARBGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBGF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBGF-09A-01D	DNA	EFO	SRS633920	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBGF-09A-01D A41447 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41447	SRX588525	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBGF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARBGF-09A-01D A41447 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41447_1_lane_dupsFlagged.bam	SRR1374909	@dbgap@:reads/SRP012000/SRS633920/SRX588525/SRR1374909/SRR1374909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBGF-09A-01D_TARGET-20-PARBGF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBGF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBGF-09A-01D	DNA	EFO	SRS633920	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBGF-09A-01D A41447 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41447	SRX588525	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBGF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARBGF-09A-01D A41447 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41447_1_lane_dupsFlagged.bam	SRR1374909	@dbgap@:reads/SRP012000/SRS633920/SRX588525/SRR1374909/SRR1374909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBGF-09A-01D_TARGET-20-PARBGF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBGF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBGF-14A-01D	DNA	EFO	SRS637452	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBGF-14A-01D A42909 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42909	SRX597869	"Specific Capture analysis of normal sample TARGET-20-PARBGF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARBGF-14A-01D A42909 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42909_1_lane_dupsFlagged.bam	SRR1395198	@dbgap@:reads/SRP012000/SRS637452/SRX597869/SRR1395198/SRR1395198.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBGF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBGF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARBGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBGF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBGF-14A-01D	DNA	EFO	SRS637452	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBGF-14A-01D A42909 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42909	SRX597869	"Specific Capture analysis of normal sample TARGET-20-PARBGF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARBGF-14A-01D A42909 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42909_1_lane_dupsFlagged.bam	SRR1395198	@dbgap@:reads/SRP012000/SRS637452/SRX597869/SRR1395198/SRR1395198.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBGF-09A-01D_TARGET-20-PARBGF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBGF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBGF-14A-01D	DNA	EFO	SRS637452	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBGF-14A-01D A42909 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42909	SRX597869	"Specific Capture analysis of normal sample TARGET-20-PARBGF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARBGF-14A-01D A42909 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42909_1_lane_dupsFlagged.bam	SRR1395198	@dbgap@:reads/SRP012000/SRS637452/SRX597869/SRR1395198/SRR1395198.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBGF-09A-01D_TARGET-20-PARBGF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-01D	DNA	EFO	SRS270688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-04A-01D A42242 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42242	SRX597734	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBIU-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARBIU-04A-01D A42242 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42242_1_lane_dupsFlagged.bam	SRR1395026	@dbgap@:reads/SRP012000/SRS270688/SRX597734/SRR1395026/SRR1395026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBIU-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBIU-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-01D	DNA	EFO	SRS270688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-04A-01D A42242 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42242	SRX597734	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBIU-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARBIU-04A-01D A42242 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42242_1_lane_dupsFlagged.bam	SRR1395026	@dbgap@:reads/SRP012000/SRS270688/SRX597734/SRR1395026/SRR1395026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBIU-04A-01D_TARGET-20-PARBIU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-01D	DNA	EFO	SRS270688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-04A-01D A42242 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42242	SRX597734	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBIU-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARBIU-04A-01D A42242 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42242_1_lane_dupsFlagged.bam	SRR1395026	@dbgap@:reads/SRP012000/SRS270688/SRX597734/SRR1395026/SRR1395026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBIU-04A-01D_TARGET-20-PARBIU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-09A-02D A31243 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31243	SRX573401	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBIU-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARBIU-09A-02D A31243 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31243_1_lane_dupsFlagged.bam	SRR1342666	@dbgap@:reads/SRP012000/SRS287493/SRX573401/SRR1342666/SRR1342666.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBIU-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBIU-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-09A-02D A31243 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31243	SRX573401	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBIU-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARBIU-09A-02D A31243 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31243_1_lane_dupsFlagged.bam	SRR1342666	@dbgap@:reads/SRP012000/SRS287493/SRX573401/SRR1342666/SRR1342666.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBIU-09A-02D_TARGET-20-PARBIU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-02D	DNA	EFO	SRS287493	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-09A-02D A31243 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31243	SRX573401	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBIU-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARBIU-09A-02D A31243 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31243_1_lane_dupsFlagged.bam	SRR1342666	@dbgap@:reads/SRP012000/SRS287493/SRX573401/SRR1342666/SRR1342666.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBIU-09A-02D_TARGET-20-PARBIU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-14A-01D A42918 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42918	SRX597911	"Specific Capture analysis of normal sample TARGET-20-PARBIU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARBIU-14A-01D A42918 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42918_1_lane_dupsFlagged.bam	SRR1395167	@dbgap@:reads/SRP012000/SRS270689/SRX597911/SRR1395167/SRR1395167.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBIU-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBIU-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-14A-01D A42918 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42918	SRX597911	"Specific Capture analysis of normal sample TARGET-20-PARBIU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARBIU-14A-01D A42918 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42918_1_lane_dupsFlagged.bam	SRR1395167	@dbgap@:reads/SRP012000/SRS270689/SRX597911/SRR1395167/SRR1395167.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBIU-04A-01D_TARGET-20-PARBIU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-14A-01D A42918 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42918	SRX597911	"Specific Capture analysis of normal sample TARGET-20-PARBIU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARBIU-14A-01D A42918 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42918_1_lane_dupsFlagged.bam	SRR1395167	@dbgap@:reads/SRP012000/SRS270689/SRX597911/SRR1395167/SRR1395167.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBIU-04A-01D_TARGET-20-PARBIU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-14A-01D A42918 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42918	SRX597911	"Specific Capture analysis of normal sample TARGET-20-PARBIU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARBIU-14A-01D A42918 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42918_1_lane_dupsFlagged.bam	SRR1395167	@dbgap@:reads/SRP012000/SRS270689/SRX597911/SRR1395167/SRR1395167.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBIU-09A-02D_TARGET-20-PARBIU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-14A-01D	DNA	EFO	SRS270689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-14A-01D A42918 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42918	SRX597911	"Specific Capture analysis of normal sample TARGET-20-PARBIU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARBIU-14A-01D A42918 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42918_1_lane_dupsFlagged.bam	SRR1395167	@dbgap@:reads/SRP012000/SRS270689/SRX597911/SRR1395167/SRR1395167.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBIU-09A-02D_TARGET-20-PARBIU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBLP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBLP-09A-01D	DNA	EFO	SRS635485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBLP-09A-01D A41728 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41728	SRX593207	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBLP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARBLP-09A-01D A41728 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41728_1_lane_dupsFlagged.bam	SRR1385610	@dbgap@:reads/SRP012000/SRS635485/SRX593207/SRR1385610/SRR1385610.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBLP-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBLP-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARBLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBLP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBLP-09A-01D	DNA	EFO	SRS635485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBLP-09A-01D A41728 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41728	SRX593207	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBLP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARBLP-09A-01D A41728 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41728_1_lane_dupsFlagged.bam	SRR1385610	@dbgap@:reads/SRP012000/SRS635485/SRX593207/SRR1385610/SRR1385610.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBLP-09A-01D_TARGET-20-PARBLP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBLP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBLP-09A-01D	DNA	EFO	SRS635485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBLP-09A-01D A41728 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41728	SRX593207	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBLP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARBLP-09A-01D A41728 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41728_1_lane_dupsFlagged.bam	SRR1385610	@dbgap@:reads/SRP012000/SRS635485/SRX593207/SRR1385610/SRR1385610.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBLP-09A-01D_TARGET-20-PARBLP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBLP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBLP-14A-01D	DNA	EFO	SRS637469	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBLP-14A-01D A42891 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42891	SRX597890	"Specific Capture analysis of normal sample TARGET-20-PARBLP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARBLP-14A-01D A42891 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42891_1_lane_dupsFlagged.bam	SRR1395179	@dbgap@:reads/SRP012000/SRS637469/SRX597890/SRR1395179/SRR1395179.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBLP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBLP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARBLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBLP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBLP-14A-01D	DNA	EFO	SRS637469	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBLP-14A-01D A42891 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42891	SRX597890	"Specific Capture analysis of normal sample TARGET-20-PARBLP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARBLP-14A-01D A42891 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42891_1_lane_dupsFlagged.bam	SRR1395179	@dbgap@:reads/SRP012000/SRS637469/SRX597890/SRR1395179/SRR1395179.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBLP-09A-01D_TARGET-20-PARBLP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBLP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBLP-14A-01D	DNA	EFO	SRS637469	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBLP-14A-01D A42891 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42891	SRX597890	"Specific Capture analysis of normal sample TARGET-20-PARBLP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARBLP-14A-01D A42891 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42891_1_lane_dupsFlagged.bam	SRR1395179	@dbgap@:reads/SRP012000/SRS637469/SRX597890/SRR1395179/SRR1395179.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBLP-09A-01D_TARGET-20-PARBLP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBLV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBLV-03A-01D	DNA	EFO	SRS629162	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBLV-03A-01D A33280 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33280	SRX575218	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBLV-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARBLV-03A-01D A33280 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33280_1_lane_dupsFlagged.bam	SRR1346499	@dbgap@:reads/SRP012000/SRS629162/SRX575218/SRR1346499/SRR1346499.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBLV-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBLV-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-04A-02D	DNA	EFO	SRS270691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBRA-04A-02D A42247 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42247	SRX597741	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBRA-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARBRA-04A-02D A42247 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42247_1_lane_dupsFlagged.bam	SRR1395018	@dbgap@:reads/SRP012000/SRS270691/SRX597741/SRR1395018/SRR1395018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBRA-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBRA-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-04A-02D	DNA	EFO	SRS270691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBRA-04A-02D A42247 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42247	SRX597741	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBRA-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARBRA-04A-02D A42247 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42247_1_lane_dupsFlagged.bam	SRR1395018	@dbgap@:reads/SRP012000/SRS270691/SRX597741/SRR1395018/SRR1395018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBRA-04A-02D_TARGET-20-PARBRA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-04A-02D	DNA	EFO	SRS270691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBRA-04A-02D A42247 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42247	SRX597741	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBRA-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARBRA-04A-02D A42247 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42247_1_lane_dupsFlagged.bam	SRR1395018	@dbgap@:reads/SRP012000/SRS270691/SRX597741/SRR1395018/SRR1395018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBRA-04A-02D_TARGET-20-PARBRA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-03D	DNA	EFO	SRS628901	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBRA-09A-03D A32319 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32319	SRX574957	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBRA-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARBRA-09A-03D A32319 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32319_1_lane_dupsFlagged.bam	SRR1346123	@dbgap@:reads/SRP012000/SRS628901/SRX574957/SRR1346123/SRR1346123.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBRA-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBRA-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-03D	DNA	EFO	SRS628901	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBRA-09A-03D A32319 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32319	SRX574957	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBRA-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARBRA-09A-03D A32319 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32319_1_lane_dupsFlagged.bam	SRR1346123	@dbgap@:reads/SRP012000/SRS628901/SRX574957/SRR1346123/SRR1346123.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBRA-09A-03D_TARGET-20-PARBRA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-03D	DNA	EFO	SRS628901	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBRA-09A-03D A32319 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32319	SRX574957	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBRA-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARBRA-09A-03D A32319 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32319_1_lane_dupsFlagged.bam	SRR1346123	@dbgap@:reads/SRP012000/SRS628901/SRX574957/SRR1346123/SRR1346123.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBRA-09A-03D_TARGET-20-PARBRA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBRA-14A-01D A42338 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42338	SRX593604	"Specific Capture analysis of normal sample TARGET-20-PARBRA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARBRA-14A-01D A42338 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42338_1_lane_dupsFlagged.bam	SRR1386068	@dbgap@:reads/SRP012000/SRS270692/SRX593604/SRR1386068/SRR1386068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBRA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBRA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBRA-14A-01D A42338 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42338	SRX593604	"Specific Capture analysis of normal sample TARGET-20-PARBRA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARBRA-14A-01D A42338 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42338_1_lane_dupsFlagged.bam	SRR1386068	@dbgap@:reads/SRP012000/SRS270692/SRX593604/SRR1386068/SRR1386068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBRA-04A-02D_TARGET-20-PARBRA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBRA-14A-01D A42338 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42338	SRX593604	"Specific Capture analysis of normal sample TARGET-20-PARBRA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARBRA-14A-01D A42338 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42338_1_lane_dupsFlagged.bam	SRR1386068	@dbgap@:reads/SRP012000/SRS270692/SRX593604/SRR1386068/SRR1386068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBRA-04A-02D_TARGET-20-PARBRA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBRA-14A-01D A42338 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42338	SRX593604	"Specific Capture analysis of normal sample TARGET-20-PARBRA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARBRA-14A-01D A42338 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42338_1_lane_dupsFlagged.bam	SRR1386068	@dbgap@:reads/SRP012000/SRS270692/SRX593604/SRR1386068/SRR1386068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBRA-09A-03D_TARGET-20-PARBRA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-14A-01D	DNA	EFO	SRS270692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBRA-14A-01D A42338 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42338	SRX593604	"Specific Capture analysis of normal sample TARGET-20-PARBRA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARBRA-14A-01D A42338 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42338_1_lane_dupsFlagged.bam	SRR1386068	@dbgap@:reads/SRP012000/SRS270692/SRX593604/SRR1386068/SRR1386068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBRA-09A-03D_TARGET-20-PARBRA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01D	DNA	EFO	SRS628292	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBTV-09A-01D A31223 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31223	SRX573351	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBTV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARBTV-09A-01D A31223 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31223_1_lane_dupsFlagged.bam	SRR1342678	@dbgap@:reads/SRP012000/SRS628292/SRX573351/SRR1342678/SRR1342678.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBTV-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBTV-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01D	DNA	EFO	SRS628292	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBTV-09A-01D A31223 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31223	SRX573351	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBTV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARBTV-09A-01D A31223 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31223_1_lane_dupsFlagged.bam	SRR1342678	@dbgap@:reads/SRP012000/SRS628292/SRX573351/SRR1342678/SRR1342678.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBTV-09A-01D_TARGET-20-PARBTV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01D	DNA	EFO	SRS628292	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBTV-09A-01D A31223 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31223	SRX573351	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBTV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARBTV-09A-01D A31223 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31223_1_lane_dupsFlagged.bam	SRR1342678	@dbgap@:reads/SRP012000/SRS628292/SRX573351/SRR1342678/SRR1342678.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBTV-09A-01D_TARGET-20-PARBTV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-14A-01D	DNA	EFO	SRS635770	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBTV-14A-01D A42299 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42299	SRX593607	"Specific Capture analysis of normal sample TARGET-20-PARBTV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARBTV-14A-01D A42299 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42299_1_lane_dupsFlagged.bam	SRR1386019	@dbgap@:reads/SRP012000/SRS635770/SRX593607/SRR1386019/SRR1386019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBTV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBTV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-14A-01D	DNA	EFO	SRS635770	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBTV-14A-01D A42299 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42299	SRX593607	"Specific Capture analysis of normal sample TARGET-20-PARBTV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARBTV-14A-01D A42299 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42299_1_lane_dupsFlagged.bam	SRR1386019	@dbgap@:reads/SRP012000/SRS635770/SRX593607/SRR1386019/SRR1386019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBTV-09A-01D_TARGET-20-PARBTV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-14A-01D	DNA	EFO	SRS635770	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBTV-14A-01D A42299 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42299	SRX593607	"Specific Capture analysis of normal sample TARGET-20-PARBTV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARBTV-14A-01D A42299 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42299_1_lane_dupsFlagged.bam	SRR1386019	@dbgap@:reads/SRP012000/SRS635770/SRX593607/SRR1386019/SRR1386019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBTV-09A-01D_TARGET-20-PARBTV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBVE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBVE-09A-02D	DNA	EFO	SRS628702	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBVE-09A-02D A32177 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32177	SRX574395	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBVE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARBVE-09A-02D A32177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32177_1_lane_dupsFlagged.bam	SRR1344892	@dbgap@:reads/SRP012000/SRS628702/SRX574395/SRR1344892/SRR1344892.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBVE-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBVE-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARBVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBVE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBVE-09A-02D	DNA	EFO	SRS628702	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBVE-09A-02D A32177 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32177	SRX574395	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBVE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARBVE-09A-02D A32177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32177_1_lane_dupsFlagged.bam	SRR1344892	@dbgap@:reads/SRP012000/SRS628702/SRX574395/SRR1344892/SRR1344892.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBVE-09A-02D_TARGET-20-PARBVE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBVE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBVE-09A-02D	DNA	EFO	SRS628702	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBVE-09A-02D A32177 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32177	SRX574395	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBVE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARBVE-09A-02D A32177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32177_1_lane_dupsFlagged.bam	SRR1344892	@dbgap@:reads/SRP012000/SRS628702/SRX574395/SRR1344892/SRR1344892.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBVE-09A-02D_TARGET-20-PARBVE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBVE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBVE-14A-01D	DNA	EFO	SRS637362	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBVE-14A-01D A42779 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42779	SRX597767	"Specific Capture analysis of normal sample TARGET-20-PARBVE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARBVE-14A-01D A42779 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42779_1_lane_dupsFlagged.bam	SRR1395056	@dbgap@:reads/SRP012000/SRS637362/SRX597767/SRR1395056/SRR1395056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBVE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBVE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARBVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBVE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBVE-14A-01D	DNA	EFO	SRS637362	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBVE-14A-01D A42779 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42779	SRX597767	"Specific Capture analysis of normal sample TARGET-20-PARBVE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARBVE-14A-01D A42779 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42779_1_lane_dupsFlagged.bam	SRR1395056	@dbgap@:reads/SRP012000/SRS637362/SRX597767/SRR1395056/SRR1395056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBVE-09A-02D_TARGET-20-PARBVE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBVE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBVE-14A-01D	DNA	EFO	SRS637362	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBVE-14A-01D A42779 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42779	SRX597767	"Specific Capture analysis of normal sample TARGET-20-PARBVE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARBVE-14A-01D A42779 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42779_1_lane_dupsFlagged.bam	SRR1395056	@dbgap@:reads/SRP012000/SRS637362/SRX597767/SRR1395056/SRR1395056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBVE-09A-02D_TARGET-20-PARBVE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-01D	DNA	EFO	SRS270694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBXE-09A-01D A31224 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31224	SRX573357	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBXE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARBXE-09A-01D A31224 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31224_1_lane_dupsFlagged.bam	SRR1342691	@dbgap@:reads/SRP012000/SRS270694/SRX573357/SRR1342691/SRR1342691.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBXE-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBXE-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-01D	DNA	EFO	SRS270694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBXE-09A-01D A31224 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31224	SRX573357	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBXE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARBXE-09A-01D A31224 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31224_1_lane_dupsFlagged.bam	SRR1342691	@dbgap@:reads/SRP012000/SRS270694/SRX573357/SRR1342691/SRR1342691.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBXE-09A-01D_TARGET-20-PARBXE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-01D	DNA	EFO	SRS270694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBXE-09A-01D A31224 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31224	SRX573357	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBXE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARBXE-09A-01D A31224 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31224_1_lane_dupsFlagged.bam	SRR1342691	@dbgap@:reads/SRP012000/SRS270694/SRX573357/SRR1342691/SRR1342691.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBXE-09A-01D_TARGET-20-PARBXE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBXE-14A-01D A42364 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42364	SRX666438	"Specific Capture analysis of normal sample TARGET-20-PARBXE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARBXE-14A-01D A42364 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42364_2_lanes_dupsFlagged.bam	SRR1532817	@dbgap@:reads/SRP012000/SRS270695/SRX666438/SRR1532817/SRR1532817.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBXE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBXE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBXE-14A-01D A42364 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42364	SRX666438	"Specific Capture analysis of normal sample TARGET-20-PARBXE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARBXE-14A-01D A42364 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42364_2_lanes_dupsFlagged.bam	SRR1532817	@dbgap@:reads/SRP012000/SRS270695/SRX666438/SRR1532817/SRR1532817.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBXE-09A-01D_TARGET-20-PARBXE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-14A-01D	DNA	EFO	SRS270695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBXE-14A-01D A42364 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42364	SRX666438	"Specific Capture analysis of normal sample TARGET-20-PARBXE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARBXE-14A-01D A42364 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42364_2_lanes_dupsFlagged.bam	SRR1532817	@dbgap@:reads/SRP012000/SRS270695/SRX666438/SRR1532817/SRR1532817.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBXE-09A-01D_TARGET-20-PARBXE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBZJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBZJ-09A-01D	DNA	EFO	SRS633681	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBZJ-09A-01D A33383 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33383	SRX587975	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBZJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARBZJ-09A-01D A33383 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33383_1_lane_dupsFlagged.bam	SRR1373831	@dbgap@:reads/SRP012000/SRS633681/SRX587975/SRR1373831/SRR1373831.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBZJ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBZJ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARBZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBZJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBZJ-09A-01D	DNA	EFO	SRS633681	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBZJ-09A-01D A33383 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33383	SRX587975	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBZJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARBZJ-09A-01D A33383 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33383_1_lane_dupsFlagged.bam	SRR1373831	@dbgap@:reads/SRP012000/SRS633681/SRX587975/SRR1373831/SRR1373831.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBZJ-09A-01D_TARGET-20-PARBZJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBZJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBZJ-09A-01D	DNA	EFO	SRS633681	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBZJ-09A-01D A33383 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33383	SRX587975	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARBZJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARBZJ-09A-01D A33383 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33383_1_lane_dupsFlagged.bam	SRR1373831	@dbgap@:reads/SRP012000/SRS633681/SRX587975/SRR1373831/SRR1373831.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBZJ-09A-01D_TARGET-20-PARBZJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARBZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBZJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBZJ-14A-01D	DNA	EFO	SRS636025	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBZJ-14A-01D A42607 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42607	SRX594001	"Specific Capture analysis of normal sample TARGET-20-PARBZJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARBZJ-14A-01D A42607 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42607_1_lane_dupsFlagged.bam	SRR1386453	@dbgap@:reads/SRP012000/SRS636025/SRX594001/SRR1386453/SRR1386453.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARBZJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARBZJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARBZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBZJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBZJ-14A-01D	DNA	EFO	SRS636025	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBZJ-14A-01D A42607 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42607	SRX594001	"Specific Capture analysis of normal sample TARGET-20-PARBZJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARBZJ-14A-01D A42607 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42607_1_lane_dupsFlagged.bam	SRR1386453	@dbgap@:reads/SRP012000/SRS636025/SRX594001/SRR1386453/SRR1386453.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBZJ-09A-01D_TARGET-20-PARBZJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARBZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARBZJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBZJ-14A-01D	DNA	EFO	SRS636025	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBZJ-14A-01D A42607 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42607	SRX594001	"Specific Capture analysis of normal sample TARGET-20-PARBZJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARBZJ-14A-01D A42607 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42607_1_lane_dupsFlagged.bam	SRR1386453	@dbgap@:reads/SRP012000/SRS636025/SRX594001/SRR1386453/SRR1386453.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARBZJ-09A-01D_TARGET-20-PARBZJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCAU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCAU-09A-01D	DNA	EFO	SRS635473	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCAU-09A-01D A41741 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41741	SRX593195	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCAU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARCAU-09A-01D A41741 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41741_1_lane_dupsFlagged.bam	SRR1385615	@dbgap@:reads/SRP012000/SRS635473/SRX593195/SRR1385615/SRR1385615.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCAU-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCAU-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARCAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCAU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCAU-09A-01D	DNA	EFO	SRS635473	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCAU-09A-01D A41741 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41741	SRX593195	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCAU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARCAU-09A-01D A41741 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41741_1_lane_dupsFlagged.bam	SRR1385615	@dbgap@:reads/SRP012000/SRS635473/SRX593195/SRR1385615/SRR1385615.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCAU-09A-01D_TARGET-20-PARCAU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCAU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCAU-09A-01D	DNA	EFO	SRS635473	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCAU-09A-01D A41741 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41741	SRX593195	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCAU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARCAU-09A-01D A41741 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41741_1_lane_dupsFlagged.bam	SRR1385615	@dbgap@:reads/SRP012000/SRS635473/SRX593195/SRR1385615/SRR1385615.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCAU-09A-01D_TARGET-20-PARCAU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCAU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCAU-14A-01D	DNA	EFO	SRS637477	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCAU-14A-01D A42889 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42889	SRX597903	"Specific Capture analysis of normal sample TARGET-20-PARCAU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARCAU-14A-01D A42889 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42889_1_lane_dupsFlagged.bam	SRR1395178	@dbgap@:reads/SRP012000/SRS637477/SRX597903/SRR1395178/SRR1395178.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCAU-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCAU-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARCAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCAU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCAU-14A-01D	DNA	EFO	SRS637477	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCAU-14A-01D A42889 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42889	SRX597903	"Specific Capture analysis of normal sample TARGET-20-PARCAU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARCAU-14A-01D A42889 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42889_1_lane_dupsFlagged.bam	SRR1395178	@dbgap@:reads/SRP012000/SRS637477/SRX597903/SRR1395178/SRR1395178.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCAU-09A-01D_TARGET-20-PARCAU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCAU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCAU-14A-01D	DNA	EFO	SRS637477	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCAU-14A-01D A42889 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42889	SRX597903	"Specific Capture analysis of normal sample TARGET-20-PARCAU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARCAU-14A-01D A42889 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42889_1_lane_dupsFlagged.bam	SRR1395178	@dbgap@:reads/SRP012000/SRS637477/SRX597903/SRR1395178/SRR1395178.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCAU-09A-01D_TARGET-20-PARCAU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-02D	DNA	EFO	SRS270696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCCH-03A-02D A32178 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32178	SRX574439	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCCH-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARCCH-03A-02D A32178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32178_1_lane_dupsFlagged.bam	SRR1344865	@dbgap@:reads/SRP012000/SRS270696/SRX574439/SRR1344865/SRR1344865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCCH-03A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCCH-03A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-02D	DNA	EFO	SRS270696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCCH-03A-02D A32178 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32178	SRX574439	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCCH-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARCCH-03A-02D A32178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32178_1_lane_dupsFlagged.bam	SRR1344865	@dbgap@:reads/SRP012000/SRS270696/SRX574439/SRR1344865/SRR1344865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCCH-03A-02D_TARGET-20-PARCCH-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-02D	DNA	EFO	SRS270696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCCH-03A-02D A32178 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32178	SRX574439	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCCH-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARCCH-03A-02D A32178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32178_1_lane_dupsFlagged.bam	SRR1344865	@dbgap@:reads/SRP012000/SRS270696/SRX574439/SRR1344865/SRR1344865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCCH-03A-02D_TARGET-20-PARCCH-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-03D	DNA	EFO	SRS637390	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCCH-14A-03D A42780 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42780	SRX597798	"Specific Capture analysis of normal sample TARGET-20-PARCCH-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARCCH-14A-03D A42780 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42780_1_lane_dupsFlagged.bam	SRR1395120	@dbgap@:reads/SRP012000/SRS637390/SRX597798/SRR1395120/SRR1395120.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCCH-14A-03D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCCH-14A-03D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-03D	DNA	EFO	SRS637390	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCCH-14A-03D A42780 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42780	SRX597798	"Specific Capture analysis of normal sample TARGET-20-PARCCH-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARCCH-14A-03D A42780 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42780_1_lane_dupsFlagged.bam	SRR1395120	@dbgap@:reads/SRP012000/SRS637390/SRX597798/SRR1395120/SRR1395120.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCCH-03A-02D_TARGET-20-PARCCH-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-14A-03D	DNA	EFO	SRS637390	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCCH-14A-03D A42780 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42780	SRX597798	"Specific Capture analysis of normal sample TARGET-20-PARCCH-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARCCH-14A-03D A42780 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42780_1_lane_dupsFlagged.bam	SRR1395120	@dbgap@:reads/SRP012000/SRS637390/SRX597798/SRR1395120/SRR1395120.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCCH-03A-02D_TARGET-20-PARCCH-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCEA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEA-09A-01D	DNA	EFO	SRS635620	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCEA-09A-01D A41922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41922	SRX593440	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCEA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARCEA-09A-01D A41922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41922_1_lane_dupsFlagged.bam	SRR1385910	@dbgap@:reads/SRP012000/SRS635620/SRX593440/SRR1385910/SRR1385910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCEA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCEA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARCEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCEA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEA-09A-01D	DNA	EFO	SRS635620	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCEA-09A-01D A41922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41922	SRX593440	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCEA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARCEA-09A-01D A41922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41922_1_lane_dupsFlagged.bam	SRR1385910	@dbgap@:reads/SRP012000/SRS635620/SRX593440/SRR1385910/SRR1385910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCEA-09A-01D_TARGET-20-PARCEA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCEA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEA-09A-01D	DNA	EFO	SRS635620	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCEA-09A-01D A41922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41922	SRX593440	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCEA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARCEA-09A-01D A41922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41922_1_lane_dupsFlagged.bam	SRR1385910	@dbgap@:reads/SRP012000/SRS635620/SRX593440/SRR1385910/SRR1385910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCEA-09A-01D_TARGET-20-PARCEA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCEA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEA-14A-01D	DNA	EFO	SRS637408	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCEA-14A-01D A42781 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42781	SRX597815	"Specific Capture analysis of normal sample TARGET-20-PARCEA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARCEA-14A-01D A42781 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42781_1_lane_dupsFlagged.bam	SRR1395049	@dbgap@:reads/SRP012000/SRS637408/SRX597815/SRR1395049/SRR1395049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCEA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCEA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARCEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCEA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEA-14A-01D	DNA	EFO	SRS637408	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCEA-14A-01D A42781 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42781	SRX597815	"Specific Capture analysis of normal sample TARGET-20-PARCEA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARCEA-14A-01D A42781 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42781_1_lane_dupsFlagged.bam	SRR1395049	@dbgap@:reads/SRP012000/SRS637408/SRX597815/SRR1395049/SRR1395049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCEA-09A-01D_TARGET-20-PARCEA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCEA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEA-14A-01D	DNA	EFO	SRS637408	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCEA-14A-01D A42781 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42781	SRX597815	"Specific Capture analysis of normal sample TARGET-20-PARCEA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARCEA-14A-01D A42781 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42781_1_lane_dupsFlagged.bam	SRR1395049	@dbgap@:reads/SRP012000/SRS637408/SRX597815/SRR1395049/SRR1395049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCEA-09A-01D_TARGET-20-PARCEA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEV-09A-01D	DNA	EFO	SRS628283	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCEV-09A-01D A31244 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31244	SRX573338	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCEV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARCEV-09A-01D A31244 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31244_1_lane_dupsFlagged.bam	SRR1342672	@dbgap@:reads/SRP012000/SRS628283/SRX573338/SRR1342672/SRR1342672.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCEV-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCEV-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARCEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEV-09A-01D	DNA	EFO	SRS628283	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCEV-09A-01D A31244 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31244	SRX573338	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCEV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARCEV-09A-01D A31244 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31244_1_lane_dupsFlagged.bam	SRR1342672	@dbgap@:reads/SRP012000/SRS628283/SRX573338/SRR1342672/SRR1342672.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCEV-09A-01D_TARGET-20-PARCEV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEV-09A-01D	DNA	EFO	SRS628283	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCEV-09A-01D A31244 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31244	SRX573338	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCEV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARCEV-09A-01D A31244 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31244_1_lane_dupsFlagged.bam	SRR1342672	@dbgap@:reads/SRP012000/SRS628283/SRX573338/SRR1342672/SRR1342672.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCEV-09A-01D_TARGET-20-PARCEV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEV-14A-01D	DNA	EFO	SRS635885	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCEV-14A-01D A42543 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42543	SRX593845	"Specific Capture analysis of normal sample TARGET-20-PARCEV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARCEV-14A-01D A42543 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42543_1_lane_dupsFlagged.bam	SRR1386383	@dbgap@:reads/SRP012000/SRS635885/SRX593845/SRR1386383/SRR1386383.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCEV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCEV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARCEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEV-14A-01D	DNA	EFO	SRS635885	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCEV-14A-01D A42543 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42543	SRX593845	"Specific Capture analysis of normal sample TARGET-20-PARCEV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARCEV-14A-01D A42543 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42543_1_lane_dupsFlagged.bam	SRR1386383	@dbgap@:reads/SRP012000/SRS635885/SRX593845/SRR1386383/SRR1386383.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCEV-09A-01D_TARGET-20-PARCEV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEV-14A-01D	DNA	EFO	SRS635885	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCEV-14A-01D A42543 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42543	SRX593845	"Specific Capture analysis of normal sample TARGET-20-PARCEV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARCEV-14A-01D A42543 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42543_1_lane_dupsFlagged.bam	SRR1386383	@dbgap@:reads/SRP012000/SRS635885/SRX593845/SRR1386383/SRR1386383.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCEV-09A-01D_TARGET-20-PARCEV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCHW-09A-01D	DNA	EFO	SRS628319	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCHW-09A-01D A31273 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31273	SRX573394	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCHW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARCHW-09A-01D A31273 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31273_1_lane_dupsFlagged.bam	SRR1342659	@dbgap@:reads/SRP012000/SRS628319/SRX573394/SRR1342659/SRR1342659.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCHW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCHW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARCIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCIN-09A-01D	DNA	EFO	SRS635509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCIN-09A-01D A41742 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41742	SRX593231	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCIN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARCIN-09A-01D A41742 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41742_1_lane_dupsFlagged.bam	SRR1385586	@dbgap@:reads/SRP012000/SRS635509/SRX593231/SRR1385586/SRR1385586.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCIN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCIN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARCIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCIN-09A-01D	DNA	EFO	SRS635509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCIN-09A-01D A41742 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41742	SRX593231	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCIN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARCIN-09A-01D A41742 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41742_1_lane_dupsFlagged.bam	SRR1385586	@dbgap@:reads/SRP012000/SRS635509/SRX593231/SRR1385586/SRR1385586.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCIN-09A-01D_TARGET-20-PARCIN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCIN-09A-01D	DNA	EFO	SRS635509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCIN-09A-01D A41742 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41742	SRX593231	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCIN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARCIN-09A-01D A41742 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41742_1_lane_dupsFlagged.bam	SRR1385586	@dbgap@:reads/SRP012000/SRS635509/SRX593231/SRR1385586/SRR1385586.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCIN-09A-01D_TARGET-20-PARCIN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCIN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCIN-14A-01D	DNA	EFO	SRS635712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCIN-14A-01D A41683 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41683	SRX593535	"Specific Capture analysis of normal sample TARGET-20-PARCIN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARCIN-14A-01D A41683 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41683_1_lane_dupsFlagged.bam	SRR1385971	@dbgap@:reads/SRP012000/SRS635712/SRX593535/SRR1385971/SRR1385971.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCIN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCIN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARCIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCIN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCIN-14A-01D	DNA	EFO	SRS635712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCIN-14A-01D A41683 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41683	SRX593535	"Specific Capture analysis of normal sample TARGET-20-PARCIN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARCIN-14A-01D A41683 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41683_1_lane_dupsFlagged.bam	SRR1385971	@dbgap@:reads/SRP012000/SRS635712/SRX593535/SRR1385971/SRR1385971.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCIN-09A-01D_TARGET-20-PARCIN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCIN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCIN-14A-01D	DNA	EFO	SRS635712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCIN-14A-01D A41683 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41683	SRX593535	"Specific Capture analysis of normal sample TARGET-20-PARCIN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARCIN-14A-01D A41683 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41683_1_lane_dupsFlagged.bam	SRR1385971	@dbgap@:reads/SRP012000/SRS635712/SRX593535/SRR1385971/SRR1385971.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCIN-09A-01D_TARGET-20-PARCIN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCRW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCRW-03A-01D	DNA	EFO	SRS633704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCRW-03A-01D A33384 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33384	SRX587998	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCRW-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARCRW-03A-01D A33384 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33384_1_lane_dupsFlagged.bam	SRR1373842	@dbgap@:reads/SRP012000/SRS633704/SRX587998/SRR1373842/SRR1373842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCRW-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCRW-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARCRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCRW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCRW-03A-01D	DNA	EFO	SRS633704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCRW-03A-01D A33384 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33384	SRX587998	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCRW-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARCRW-03A-01D A33384 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33384_1_lane_dupsFlagged.bam	SRR1373842	@dbgap@:reads/SRP012000/SRS633704/SRX587998/SRR1373842/SRR1373842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCRW-03A-01D_TARGET-20-PARCRW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCRW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCRW-03A-01D	DNA	EFO	SRS633704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCRW-03A-01D A33384 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33384	SRX587998	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCRW-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARCRW-03A-01D A33384 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33384_1_lane_dupsFlagged.bam	SRR1373842	@dbgap@:reads/SRP012000/SRS633704/SRX587998/SRR1373842/SRR1373842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCRW-03A-01D_TARGET-20-PARCRW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCRW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCRW-14A-01D	DNA	EFO	SRS635924	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCRW-14A-01D A42510 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42510	SRX593884	"Specific Capture analysis of normal sample TARGET-20-PARCRW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARCRW-14A-01D A42510 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42510_1_lane_dupsFlagged.bam	SRR1386333	@dbgap@:reads/SRP012000/SRS635924/SRX593884/SRR1386333/SRR1386333.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCRW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCRW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARCRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCRW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCRW-14A-01D	DNA	EFO	SRS635924	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCRW-14A-01D A42510 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42510	SRX593884	"Specific Capture analysis of normal sample TARGET-20-PARCRW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARCRW-14A-01D A42510 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42510_1_lane_dupsFlagged.bam	SRR1386333	@dbgap@:reads/SRP012000/SRS635924/SRX593884/SRR1386333/SRR1386333.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCRW-03A-01D_TARGET-20-PARCRW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCRW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCRW-14A-01D	DNA	EFO	SRS635924	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCRW-14A-01D A42510 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42510	SRX593884	"Specific Capture analysis of normal sample TARGET-20-PARCRW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARCRW-14A-01D A42510 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42510_1_lane_dupsFlagged.bam	SRR1386333	@dbgap@:reads/SRP012000/SRS635924/SRX593884/SRR1386333/SRR1386333.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCRW-03A-01D_TARGET-20-PARCRW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCTW-09A-01D	DNA	EFO	SRS633640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCTW-09A-01D A33385 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33385	SRX587934	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCTW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARCTW-09A-01D A33385 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33385_1_lane_dupsFlagged.bam	SRR1373826	@dbgap@:reads/SRP012000/SRS633640/SRX587934/SRR1373826/SRR1373826.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCTW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCTW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-04A-02D	DNA	EFO	SRS270703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCUK-04A-02D A42273 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42273	SRX597698	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCUK-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARCUK-04A-02D A42273 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42273_1_lane_dupsFlagged.bam	SRR1394971	@dbgap@:reads/SRP012000/SRS270703/SRX597698/SRR1394971/SRR1394971.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCUK-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCUK-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-04A-02D	DNA	EFO	SRS270703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCUK-04A-02D A42273 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42273	SRX597698	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCUK-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARCUK-04A-02D A42273 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42273_1_lane_dupsFlagged.bam	SRR1394971	@dbgap@:reads/SRP012000/SRS270703/SRX597698/SRR1394971/SRR1394971.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCUK-04A-02D_TARGET-20-PARCUK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-04A-02D	DNA	EFO	SRS270703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCUK-04A-02D A42273 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42273	SRX597698	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCUK-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARCUK-04A-02D A42273 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42273_1_lane_dupsFlagged.bam	SRR1394971	@dbgap@:reads/SRP012000/SRS270703/SRX597698/SRR1394971/SRR1394971.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCUK-04A-02D_TARGET-20-PARCUK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-01D	DNA	EFO	SRS628723	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCUK-09A-01D A32179 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32179	SRX574418	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCUK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARCUK-09A-01D A32179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32179_1_lane_dupsFlagged.bam	SRR1344873	@dbgap@:reads/SRP012000/SRS628723/SRX574418/SRR1344873/SRR1344873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCUK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCUK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-01D	DNA	EFO	SRS628723	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCUK-09A-01D A32179 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32179	SRX574418	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCUK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARCUK-09A-01D A32179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32179_1_lane_dupsFlagged.bam	SRR1344873	@dbgap@:reads/SRP012000/SRS628723/SRX574418/SRR1344873/SRR1344873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCUK-09A-01D_TARGET-20-PARCUK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-01D	DNA	EFO	SRS628723	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCUK-09A-01D A32179 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32179	SRX574418	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCUK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARCUK-09A-01D A32179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32179_1_lane_dupsFlagged.bam	SRR1344873	@dbgap@:reads/SRP012000/SRS628723/SRX574418/SRR1344873/SRR1344873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCUK-09A-01D_TARGET-20-PARCUK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-01D	DNA	EFO	SRS637506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCUK-14A-01D A42919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42919	SRX597940	"Specific Capture analysis of normal sample TARGET-20-PARCUK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARCUK-14A-01D A42919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42919_1_lane_dupsFlagged.bam	SRR1395187	@dbgap@:reads/SRP012000/SRS637506/SRX597940/SRR1395187/SRR1395187.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCUK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCUK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-01D	DNA	EFO	SRS637506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCUK-14A-01D A42919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42919	SRX597940	"Specific Capture analysis of normal sample TARGET-20-PARCUK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARCUK-14A-01D A42919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42919_1_lane_dupsFlagged.bam	SRR1395187	@dbgap@:reads/SRP012000/SRS637506/SRX597940/SRR1395187/SRR1395187.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCUK-04A-02D_TARGET-20-PARCUK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-01D	DNA	EFO	SRS637506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCUK-14A-01D A42919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42919	SRX597940	"Specific Capture analysis of normal sample TARGET-20-PARCUK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARCUK-14A-01D A42919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42919_1_lane_dupsFlagged.bam	SRR1395187	@dbgap@:reads/SRP012000/SRS637506/SRX597940/SRR1395187/SRR1395187.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCUK-04A-02D_TARGET-20-PARCUK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-01D	DNA	EFO	SRS637506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCUK-14A-01D A42919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42919	SRX597940	"Specific Capture analysis of normal sample TARGET-20-PARCUK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARCUK-14A-01D A42919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42919_1_lane_dupsFlagged.bam	SRR1395187	@dbgap@:reads/SRP012000/SRS637506/SRX597940/SRR1395187/SRR1395187.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCUK-09A-01D_TARGET-20-PARCUK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-14A-01D	DNA	EFO	SRS637506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCUK-14A-01D A42919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42919	SRX597940	"Specific Capture analysis of normal sample TARGET-20-PARCUK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARCUK-14A-01D A42919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42919_1_lane_dupsFlagged.bam	SRR1395187	@dbgap@:reads/SRP012000/SRS637506/SRX597940/SRR1395187/SRR1395187.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCUK-09A-01D_TARGET-20-PARCUK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVP-09A-02D	DNA	EFO	SRS628688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVP-09A-02D A32180 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32180	SRX574381	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCVP-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARCVP-09A-02D A32180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32180_1_lane_dupsFlagged.bam	SRR1344889	@dbgap@:reads/SRP012000/SRS628688/SRX574381/SRR1344889/SRR1344889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCVP-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCVP-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARCVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVP-09A-02D	DNA	EFO	SRS628688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVP-09A-02D A32180 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32180	SRX574381	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCVP-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARCVP-09A-02D A32180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32180_1_lane_dupsFlagged.bam	SRR1344889	@dbgap@:reads/SRP012000/SRS628688/SRX574381/SRR1344889/SRR1344889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCVP-09A-02D_TARGET-20-PARCVP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVP-09A-02D	DNA	EFO	SRS628688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVP-09A-02D A32180 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32180	SRX574381	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCVP-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARCVP-09A-02D A32180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32180_1_lane_dupsFlagged.bam	SRR1344889	@dbgap@:reads/SRP012000/SRS628688/SRX574381/SRR1344889/SRR1344889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCVP-09A-02D_TARGET-20-PARCVP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVP-14A-01D	DNA	EFO	SRS635737	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVP-14A-01D A42365 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42365	SRX593569	"Specific Capture analysis of normal sample TARGET-20-PARCVP-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARCVP-14A-01D A42365 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42365_1_lane_dupsFlagged.bam	SRR1386034	@dbgap@:reads/SRP012000/SRS635737/SRX593569/SRR1386034/SRR1386034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCVP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCVP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARCVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVP-14A-01D	DNA	EFO	SRS635737	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVP-14A-01D A42365 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42365	SRX593569	"Specific Capture analysis of normal sample TARGET-20-PARCVP-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARCVP-14A-01D A42365 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42365_1_lane_dupsFlagged.bam	SRR1386034	@dbgap@:reads/SRP012000/SRS635737/SRX593569/SRR1386034/SRR1386034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCVP-09A-02D_TARGET-20-PARCVP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVP-14A-01D	DNA	EFO	SRS635737	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVP-14A-01D A42365 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42365	SRX593569	"Specific Capture analysis of normal sample TARGET-20-PARCVP-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARCVP-14A-01D A42365 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42365_1_lane_dupsFlagged.bam	SRR1386034	@dbgap@:reads/SRP012000/SRS635737/SRX593569/SRR1386034/SRR1386034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCVP-09A-02D_TARGET-20-PARCVP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-03A-02D	DNA	EFO	SRS628753	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVS-03A-02D A32181 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32181	SRX574449	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCVS-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARCVS-03A-02D A32181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32181_1_lane_dupsFlagged.bam	SRR1344888	@dbgap@:reads/SRP012000/SRS628753/SRX574449/SRR1344888/SRR1344888.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCVS-03A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCVS-03A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-03A-02D	DNA	EFO	SRS628753	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVS-03A-02D A32181 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32181	SRX574449	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCVS-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARCVS-03A-02D A32181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32181_1_lane_dupsFlagged.bam	SRR1344888	@dbgap@:reads/SRP012000/SRS628753/SRX574449/SRR1344888/SRR1344888.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCVS-03A-02D_TARGET-20-PARCVS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-03A-02D	DNA	EFO	SRS628753	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVS-03A-02D A32181 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32181	SRX574449	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCVS-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARCVS-03A-02D A32181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32181_1_lane_dupsFlagged.bam	SRR1344888	@dbgap@:reads/SRP012000/SRS628753/SRX574449/SRR1344888/SRR1344888.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCVS-03A-02D_TARGET-20-PARCVS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01D	DNA	EFO	SRS270706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVS-04A-01D A42708 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42708	SRX597988	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCVS-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARCVS-04A-01D A42708 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42708_1_lane_dupsFlagged.bam	SRR1395271	@dbgap@:reads/SRP012000/SRS270706/SRX597988/SRR1395271/SRR1395271.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCVS-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCVS-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01D	DNA	EFO	SRS270706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVS-04A-01D A42708 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42708	SRX597988	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCVS-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARCVS-04A-01D A42708 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42708_1_lane_dupsFlagged.bam	SRR1395271	@dbgap@:reads/SRP012000/SRS270706/SRX597988/SRR1395271/SRR1395271.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCVS-04A-01D_TARGET-20-PARCVS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01D	DNA	EFO	SRS270706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVS-04A-01D A42708 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42708	SRX597988	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCVS-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARCVS-04A-01D A42708 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42708_1_lane_dupsFlagged.bam	SRR1395271	@dbgap@:reads/SRP012000/SRS270706/SRX597988/SRR1395271/SRR1395271.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCVS-04A-01D_TARGET-20-PARCVS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVS-14A-01D A42890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42890	SRX597861	"Specific Capture analysis of normal sample TARGET-20-PARCVS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARCVS-14A-01D A42890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42890_1_lane_dupsFlagged.bam	SRR1395188	@dbgap@:reads/SRP012000/SRS270707/SRX597861/SRR1395188/SRR1395188.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCVS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCVS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVS-14A-01D A42890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42890	SRX597861	"Specific Capture analysis of normal sample TARGET-20-PARCVS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARCVS-14A-01D A42890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42890_1_lane_dupsFlagged.bam	SRR1395188	@dbgap@:reads/SRP012000/SRS270707/SRX597861/SRR1395188/SRR1395188.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCVS-03A-02D_TARGET-20-PARCVS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVS-14A-01D A42890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42890	SRX597861	"Specific Capture analysis of normal sample TARGET-20-PARCVS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARCVS-14A-01D A42890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42890_1_lane_dupsFlagged.bam	SRR1395188	@dbgap@:reads/SRP012000/SRS270707/SRX597861/SRR1395188/SRR1395188.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCVS-03A-02D_TARGET-20-PARCVS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVS-14A-01D A42890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42890	SRX597861	"Specific Capture analysis of normal sample TARGET-20-PARCVS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARCVS-14A-01D A42890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42890_1_lane_dupsFlagged.bam	SRR1395188	@dbgap@:reads/SRP012000/SRS270707/SRX597861/SRR1395188/SRR1395188.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCVS-04A-01D_TARGET-20-PARCVS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-14A-01D	DNA	EFO	SRS270707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVS-14A-01D A42890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42890	SRX597861	"Specific Capture analysis of normal sample TARGET-20-PARCVS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARCVS-14A-01D A42890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42890_1_lane_dupsFlagged.bam	SRR1395188	@dbgap@:reads/SRP012000/SRS270707/SRX597861/SRR1395188/SRR1395188.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCVS-04A-01D_TARGET-20-PARCVS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-01D	DNA	EFO	SRS270708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-04A-01D A42236 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42236	SRX597750	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCZL-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARCZL-04A-01D A42236 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42236_1_lane_dupsFlagged.bam	SRR1395022	@dbgap@:reads/SRP012000/SRS270708/SRX597750/SRR1395022/SRR1395022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCZL-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCZL-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-01D	DNA	EFO	SRS270708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-04A-01D A42236 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42236	SRX597750	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCZL-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARCZL-04A-01D A42236 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42236_1_lane_dupsFlagged.bam	SRR1395022	@dbgap@:reads/SRP012000/SRS270708/SRX597750/SRR1395022/SRR1395022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCZL-04A-01D_TARGET-20-PARCZL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-01D	DNA	EFO	SRS270708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-04A-01D A42236 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42236	SRX597750	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCZL-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARCZL-04A-01D A42236 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42236_1_lane_dupsFlagged.bam	SRR1395022	@dbgap@:reads/SRP012000/SRS270708/SRX597750/SRR1395022/SRR1395022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCZL-04A-01D_TARGET-20-PARCZL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-03D	DNA	EFO	SRS628734	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-09A-03D A32182 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32182	SRX574429	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCZL-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARCZL-09A-03D A32182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32182_1_lane_dupsFlagged.bam	SRR1344870	@dbgap@:reads/SRP012000/SRS628734/SRX574429/SRR1344870/SRR1344870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCZL-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCZL-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-03D	DNA	EFO	SRS628734	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-09A-03D A32182 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32182	SRX574429	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCZL-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARCZL-09A-03D A32182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32182_1_lane_dupsFlagged.bam	SRR1344870	@dbgap@:reads/SRP012000/SRS628734/SRX574429/SRR1344870/SRR1344870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCZL-09A-03D_TARGET-20-PARCZL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-03D	DNA	EFO	SRS628734	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-09A-03D A32182 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32182	SRX574429	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCZL-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARCZL-09A-03D A32182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32182_1_lane_dupsFlagged.bam	SRR1344870	@dbgap@:reads/SRP012000/SRS628734/SRX574429/SRR1344870/SRR1344870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCZL-09A-03D_TARGET-20-PARCZL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-01D	DNA	EFO	SRS635680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-14A-01D A41662 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41662	SRX593504	"Specific Capture analysis of normal sample TARGET-20-PARCZL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARCZL-14A-01D A41662 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41662_1_lane_dupsFlagged.bam	SRR1386016	@dbgap@:reads/SRP012000/SRS635680/SRX593504/SRR1386016/SRR1386016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCZL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCZL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-01D	DNA	EFO	SRS635680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-14A-01D A41662 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41662	SRX593504	"Specific Capture analysis of normal sample TARGET-20-PARCZL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARCZL-14A-01D A41662 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41662_1_lane_dupsFlagged.bam	SRR1386016	@dbgap@:reads/SRP012000/SRS635680/SRX593504/SRR1386016/SRR1386016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCZL-04A-01D_TARGET-20-PARCZL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-01D	DNA	EFO	SRS635680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-14A-01D A41662 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41662	SRX593504	"Specific Capture analysis of normal sample TARGET-20-PARCZL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARCZL-14A-01D A41662 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41662_1_lane_dupsFlagged.bam	SRR1386016	@dbgap@:reads/SRP012000/SRS635680/SRX593504/SRR1386016/SRR1386016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCZL-04A-01D_TARGET-20-PARCZL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-01D	DNA	EFO	SRS635680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-14A-01D A41662 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41662	SRX593504	"Specific Capture analysis of normal sample TARGET-20-PARCZL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARCZL-14A-01D A41662 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41662_1_lane_dupsFlagged.bam	SRR1386016	@dbgap@:reads/SRP012000/SRS635680/SRX593504/SRR1386016/SRR1386016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCZL-09A-03D_TARGET-20-PARCZL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-14A-01D	DNA	EFO	SRS635680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-14A-01D A41662 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41662	SRX593504	"Specific Capture analysis of normal sample TARGET-20-PARCZL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARCZL-14A-01D A41662 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41662_1_lane_dupsFlagged.bam	SRR1386016	@dbgap@:reads/SRP012000/SRS635680/SRX593504/SRR1386016/SRR1386016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCZL-09A-03D_TARGET-20-PARCZL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCZP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZP-09A-01D	DNA	EFO	SRS633678	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZP-09A-01D A33364 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33364	SRX587972	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCZP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARCZP-09A-01D A33364 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33364_1_lane_dupsFlagged.bam	SRR1373796	@dbgap@:reads/SRP012000/SRS633678/SRX587972/SRR1373796/SRR1373796.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCZP-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCZP-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARCZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCZP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZP-09A-01D	DNA	EFO	SRS633678	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZP-09A-01D A33364 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33364	SRX587972	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCZP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARCZP-09A-01D A33364 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33364_1_lane_dupsFlagged.bam	SRR1373796	@dbgap@:reads/SRP012000/SRS633678/SRX587972/SRR1373796/SRR1373796.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCZP-09A-01D_TARGET-20-PARCZP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCZP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZP-09A-01D	DNA	EFO	SRS633678	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZP-09A-01D A33364 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33364	SRX587972	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARCZP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARCZP-09A-01D A33364 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33364_1_lane_dupsFlagged.bam	SRR1373796	@dbgap@:reads/SRP012000/SRS633678/SRX587972/SRR1373796/SRR1373796.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCZP-09A-01D_TARGET-20-PARCZP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARCZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCZP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZP-14A-01D	DNA	EFO	SRS634723	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZP-14A-01D A41534 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41534	SRX590831	"Specific Capture analysis of normal sample TARGET-20-PARCZP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARCZP-14A-01D A41534 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41534_1_lane_dupsFlagged.bam	SRR1379850	@dbgap@:reads/SRP012000/SRS634723/SRX590831/SRR1379850/SRR1379850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARCZP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARCZP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARCZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCZP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZP-14A-01D	DNA	EFO	SRS634723	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZP-14A-01D A41534 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41534	SRX590831	"Specific Capture analysis of normal sample TARGET-20-PARCZP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARCZP-14A-01D A41534 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41534_1_lane_dupsFlagged.bam	SRR1379850	@dbgap@:reads/SRP012000/SRS634723/SRX590831/SRR1379850/SRR1379850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCZP-09A-01D_TARGET-20-PARCZP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARCZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARCZP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZP-14A-01D	DNA	EFO	SRS634723	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZP-14A-01D A41534 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41534	SRX590831	"Specific Capture analysis of normal sample TARGET-20-PARCZP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARCZP-14A-01D A41534 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41534_1_lane_dupsFlagged.bam	SRR1379850	@dbgap@:reads/SRP012000/SRS634723/SRX590831/SRR1379850/SRR1379850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARCZP-09A-01D_TARGET-20-PARCZP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01D	DNA	EFO	SRS628739	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDA-09A-01D A32183 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32183	SRX574434	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDDA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARDDA-09A-01D A32183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32183_1_lane_dupsFlagged.bam	SRR1344845	@dbgap@:reads/SRP012000/SRS628739/SRX574434/SRR1344845/SRR1344845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDDA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDDA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01D	DNA	EFO	SRS628739	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDA-09A-01D A32183 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32183	SRX574434	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDDA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARDDA-09A-01D A32183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32183_1_lane_dupsFlagged.bam	SRR1344845	@dbgap@:reads/SRP012000/SRS628739/SRX574434/SRR1344845/SRR1344845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDDA-09A-01D_TARGET-20-PARDDA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01D	DNA	EFO	SRS628739	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDA-09A-01D A32183 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32183	SRX574434	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDDA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARDDA-09A-01D A32183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32183_1_lane_dupsFlagged.bam	SRR1344845	@dbgap@:reads/SRP012000/SRS628739/SRX574434/SRR1344845/SRR1344845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDDA-09A-01D_TARGET-20-PARDDA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-14A-01D	DNA	EFO	SRS637491	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDA-14A-01D A42901 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42901	SRX597922	"Specific Capture analysis of normal sample TARGET-20-PARDDA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARDDA-14A-01D A42901 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42901_1_lane_dupsFlagged.bam	SRR1395200	@dbgap@:reads/SRP012000/SRS637491/SRX597922/SRR1395200/SRR1395200.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDDA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDDA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-14A-01D	DNA	EFO	SRS637491	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDA-14A-01D A42901 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42901	SRX597922	"Specific Capture analysis of normal sample TARGET-20-PARDDA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARDDA-14A-01D A42901 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42901_1_lane_dupsFlagged.bam	SRR1395200	@dbgap@:reads/SRP012000/SRS637491/SRX597922/SRR1395200/SRR1395200.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDDA-09A-01D_TARGET-20-PARDDA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-14A-01D	DNA	EFO	SRS637491	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDA-14A-01D A42901 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42901	SRX597922	"Specific Capture analysis of normal sample TARGET-20-PARDDA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARDDA-14A-01D A42901 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42901_1_lane_dupsFlagged.bam	SRR1395200	@dbgap@:reads/SRP012000/SRS637491/SRX597922/SRR1395200/SRR1395200.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDDA-09A-01D_TARGET-20-PARDDA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-02D	DNA	EFO	SRS270711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-04A-02D A42212 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42212	SRX597673	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDDY-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARDDY-04A-02D A42212 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42212_1_lane_dupsFlagged.bam	SRR1394988	@dbgap@:reads/SRP012000/SRS270711/SRX597673/SRR1394988/SRR1394988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDDY-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDDY-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-02D	DNA	EFO	SRS270711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-04A-02D A42212 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42212	SRX597673	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDDY-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARDDY-04A-02D A42212 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42212_1_lane_dupsFlagged.bam	SRR1394988	@dbgap@:reads/SRP012000/SRS270711/SRX597673/SRR1394988/SRR1394988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDDY-04A-02D_TARGET-20-PARDDY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-02D	DNA	EFO	SRS270711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-04A-02D A42212 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42212	SRX597673	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDDY-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARDDY-04A-02D A42212 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42212_1_lane_dupsFlagged.bam	SRR1394988	@dbgap@:reads/SRP012000/SRS270711/SRX597673/SRR1394988/SRR1394988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDDY-04A-02D_TARGET-20-PARDDY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-03D	DNA	EFO	SRS270712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-09A-03D A31210 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31210	SRX573334	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDDY-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARDDY-09A-03D A31210 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31210_1_lane_dupsFlagged.bam	SRR1342618	@dbgap@:reads/SRP012000/SRS270712/SRX573334/SRR1342618/SRR1342618.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDDY-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDDY-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-03D	DNA	EFO	SRS270712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-09A-03D A31210 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31210	SRX573334	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDDY-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARDDY-09A-03D A31210 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31210_1_lane_dupsFlagged.bam	SRR1342618	@dbgap@:reads/SRP012000/SRS270712/SRX573334/SRR1342618/SRR1342618.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDDY-09A-03D_TARGET-20-PARDDY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-03D	DNA	EFO	SRS270712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-09A-03D A31210 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31210	SRX573334	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDDY-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARDDY-09A-03D A31210 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31210_1_lane_dupsFlagged.bam	SRR1342618	@dbgap@:reads/SRP012000/SRS270712/SRX573334/SRR1342618/SRR1342618.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDDY-09A-03D_TARGET-20-PARDDY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-14A-01D A42296 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42296	SRX593583	"Specific Capture analysis of normal sample TARGET-20-PARDDY-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARDDY-14A-01D A42296 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42296_1_lane_dupsFlagged.bam	SRR1386028	@dbgap@:reads/SRP012000/SRS270713/SRX593583/SRR1386028/SRR1386028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDDY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDDY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-14A-01D A42296 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42296	SRX593583	"Specific Capture analysis of normal sample TARGET-20-PARDDY-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARDDY-14A-01D A42296 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42296_1_lane_dupsFlagged.bam	SRR1386028	@dbgap@:reads/SRP012000/SRS270713/SRX593583/SRR1386028/SRR1386028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDDY-04A-02D_TARGET-20-PARDDY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-14A-01D A42296 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42296	SRX593583	"Specific Capture analysis of normal sample TARGET-20-PARDDY-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARDDY-14A-01D A42296 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42296_1_lane_dupsFlagged.bam	SRR1386028	@dbgap@:reads/SRP012000/SRS270713/SRX593583/SRR1386028/SRR1386028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDDY-04A-02D_TARGET-20-PARDDY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-14A-01D A42296 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42296	SRX593583	"Specific Capture analysis of normal sample TARGET-20-PARDDY-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARDDY-14A-01D A42296 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42296_1_lane_dupsFlagged.bam	SRR1386028	@dbgap@:reads/SRP012000/SRS270713/SRX593583/SRR1386028/SRR1386028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDDY-09A-03D_TARGET-20-PARDDY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-14A-01D	DNA	EFO	SRS270713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-14A-01D A42296 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42296	SRX593583	"Specific Capture analysis of normal sample TARGET-20-PARDDY-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARDDY-14A-01D A42296 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42296_1_lane_dupsFlagged.bam	SRR1386028	@dbgap@:reads/SRP012000/SRS270713/SRX593583/SRR1386028/SRR1386028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDDY-09A-03D_TARGET-20-PARDDY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-03A-01D	DNA	EFO	SRS489652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDEV-03A-01D A41841 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41841	SRX593336	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDEV-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARDEV-03A-01D A41841 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41841_1_lane_dupsFlagged.bam	SRR1385804	@dbgap@:reads/SRP012000/SRS489652/SRX593336/SRR1385804/SRR1385804.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDEV-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDEV-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-03A-01D	DNA	EFO	SRS489652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDEV-03A-01D A41841 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41841	SRX593336	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDEV-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARDEV-03A-01D A41841 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41841_1_lane_dupsFlagged.bam	SRR1385804	@dbgap@:reads/SRP012000/SRS489652/SRX593336/SRR1385804/SRR1385804.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDEV-03A-01D_TARGET-20-PARDEV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-03A-01D	DNA	EFO	SRS489652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDEV-03A-01D A41841 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41841	SRX593336	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDEV-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARDEV-03A-01D A41841 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41841_1_lane_dupsFlagged.bam	SRR1385804	@dbgap@:reads/SRP012000/SRS489652/SRX593336/SRR1385804/SRR1385804.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDEV-03A-01D_TARGET-20-PARDEV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-14A-01D	DNA	EFO	SRS635990	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDEV-14A-01D A42566 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42566	SRX593955	"Specific Capture analysis of normal sample TARGET-20-PARDEV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARDEV-14A-01D A42566 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42566_1_lane_dupsFlagged.bam	SRR1386451	@dbgap@:reads/SRP012000/SRS635990/SRX593955/SRR1386451/SRR1386451.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDEV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDEV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-14A-01D	DNA	EFO	SRS635990	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDEV-14A-01D A42566 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42566	SRX593955	"Specific Capture analysis of normal sample TARGET-20-PARDEV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARDEV-14A-01D A42566 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42566_1_lane_dupsFlagged.bam	SRR1386451	@dbgap@:reads/SRP012000/SRS635990/SRX593955/SRR1386451/SRR1386451.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDEV-03A-01D_TARGET-20-PARDEV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDEV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDEV-14A-01D	DNA	EFO	SRS635990	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDEV-14A-01D A42566 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42566	SRX593955	"Specific Capture analysis of normal sample TARGET-20-PARDEV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARDEV-14A-01D A42566 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42566_1_lane_dupsFlagged.bam	SRR1386451	@dbgap@:reads/SRP012000/SRS635990/SRX593955/SRR1386451/SRR1386451.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDEV-03A-01D_TARGET-20-PARDEV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDFM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDFM-03A-01D	DNA	EFO	SRS635442	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDFM-03A-01D A41730 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41730	SRX593164	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDFM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARDFM-03A-01D A41730 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41730_1_lane_dupsFlagged.bam	SRR1385611	@dbgap@:reads/SRP012000/SRS635442/SRX593164/SRR1385611/SRR1385611.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDFM-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDFM-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARDFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDFM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDFM-03A-01D	DNA	EFO	SRS635442	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDFM-03A-01D A41730 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41730	SRX593164	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDFM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARDFM-03A-01D A41730 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41730_1_lane_dupsFlagged.bam	SRR1385611	@dbgap@:reads/SRP012000/SRS635442/SRX593164/SRR1385611/SRR1385611.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDFM-03A-01D_TARGET-20-PARDFM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDFM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDFM-03A-01D	DNA	EFO	SRS635442	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDFM-03A-01D A41730 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41730	SRX593164	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDFM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARDFM-03A-01D A41730 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41730_1_lane_dupsFlagged.bam	SRR1385611	@dbgap@:reads/SRP012000/SRS635442/SRX593164/SRR1385611/SRR1385611.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDFM-03A-01D_TARGET-20-PARDFM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDFM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDFM-14A-01D	DNA	EFO	SRS637449	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDFM-14A-01D A42892 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42892	SRX597866	"Specific Capture analysis of normal sample TARGET-20-PARDFM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARDFM-14A-01D A42892 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42892_1_lane_dupsFlagged.bam	SRR1395164	@dbgap@:reads/SRP012000/SRS637449/SRX597866/SRR1395164/SRR1395164.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDFM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDFM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARDFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDFM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDFM-14A-01D	DNA	EFO	SRS637449	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDFM-14A-01D A42892 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42892	SRX597866	"Specific Capture analysis of normal sample TARGET-20-PARDFM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARDFM-14A-01D A42892 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42892_1_lane_dupsFlagged.bam	SRR1395164	@dbgap@:reads/SRP012000/SRS637449/SRX597866/SRR1395164/SRR1395164.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDFM-03A-01D_TARGET-20-PARDFM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDFM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDFM-14A-01D	DNA	EFO	SRS637449	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDFM-14A-01D A42892 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42892	SRX597866	"Specific Capture analysis of normal sample TARGET-20-PARDFM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARDFM-14A-01D A42892 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42892_1_lane_dupsFlagged.bam	SRR1395164	@dbgap@:reads/SRP012000/SRS637449/SRX597866/SRR1395164/SRR1395164.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDFM-03A-01D_TARGET-20-PARDFM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDKT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDKT-09A-01D	DNA	EFO	SRS633931	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDKT-09A-01D A41433 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41433	SRX588536	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDKT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARDKT-09A-01D A41433 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41433_1_lane_dupsFlagged.bam	SRR1374899	@dbgap@:reads/SRP012000/SRS633931/SRX588536/SRR1374899/SRR1374899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDKT-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDKT-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARDKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDKT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDKT-09A-01D	DNA	EFO	SRS633931	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDKT-09A-01D A41433 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41433	SRX588536	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDKT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARDKT-09A-01D A41433 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41433_1_lane_dupsFlagged.bam	SRR1374899	@dbgap@:reads/SRP012000/SRS633931/SRX588536/SRR1374899/SRR1374899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDKT-09A-01D_TARGET-20-PARDKT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDKT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDKT-09A-01D	DNA	EFO	SRS633931	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDKT-09A-01D A41433 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41433	SRX588536	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDKT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARDKT-09A-01D A41433 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41433_1_lane_dupsFlagged.bam	SRR1374899	@dbgap@:reads/SRP012000/SRS633931/SRX588536/SRR1374899/SRR1374899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDKT-09A-01D_TARGET-20-PARDKT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDKT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDKT-14A-01D	DNA	EFO	SRS635914	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDKT-14A-01D A42517 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42517	SRX593874	"Specific Capture analysis of normal sample TARGET-20-PARDKT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARDKT-14A-01D A42517 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42517_1_lane_dupsFlagged.bam	SRR1386347	@dbgap@:reads/SRP012000/SRS635914/SRX593874/SRR1386347/SRR1386347.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDKT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDKT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARDKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDKT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDKT-14A-01D	DNA	EFO	SRS635914	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDKT-14A-01D A42517 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42517	SRX593874	"Specific Capture analysis of normal sample TARGET-20-PARDKT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARDKT-14A-01D A42517 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42517_1_lane_dupsFlagged.bam	SRR1386347	@dbgap@:reads/SRP012000/SRS635914/SRX593874/SRR1386347/SRR1386347.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDKT-09A-01D_TARGET-20-PARDKT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDKT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDKT-14A-01D	DNA	EFO	SRS635914	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDKT-14A-01D A42517 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42517	SRX593874	"Specific Capture analysis of normal sample TARGET-20-PARDKT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARDKT-14A-01D A42517 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42517_1_lane_dupsFlagged.bam	SRR1386347	@dbgap@:reads/SRP012000/SRS635914/SRX593874/SRR1386347/SRR1386347.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDKT-09A-01D_TARGET-20-PARDKT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDLW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDLW-03A-01D	DNA	EFO	SRS635514	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDLW-03A-01D A41723 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41723	SRX593236	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDLW-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARDLW-03A-01D A41723 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41723_1_lane_dupsFlagged.bam	SRR1385595	@dbgap@:reads/SRP012000/SRS635514/SRX593236/SRR1385595/SRR1385595.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDLW-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDLW-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARDLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDLW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDLW-03A-01D	DNA	EFO	SRS635514	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDLW-03A-01D A41723 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41723	SRX593236	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDLW-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARDLW-03A-01D A41723 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41723_1_lane_dupsFlagged.bam	SRR1385595	@dbgap@:reads/SRP012000/SRS635514/SRX593236/SRR1385595/SRR1385595.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDLW-03A-01D_TARGET-20-PARDLW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDLW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDLW-03A-01D	DNA	EFO	SRS635514	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDLW-03A-01D A41723 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41723	SRX593236	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDLW-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARDLW-03A-01D A41723 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41723_1_lane_dupsFlagged.bam	SRR1385595	@dbgap@:reads/SRP012000/SRS635514/SRX593236/SRR1385595/SRR1385595.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDLW-03A-01D_TARGET-20-PARDLW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDLW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDLW-04A-01D	DNA	EFO	SRS637541	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDLW-04A-01D A42734 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42734	SRX597979	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDLW-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARDLW-04A-01D A42734 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42734_1_lane_dupsFlagged.bam	SRR1395278	@dbgap@:reads/SRP012000/SRS637541/SRX597979/SRR1395278/SRR1395278.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDLW-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDLW-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARDLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDLW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDLW-04A-01D	DNA	EFO	SRS637541	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDLW-04A-01D A42734 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42734	SRX597979	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDLW-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARDLW-04A-01D A42734 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42734_1_lane_dupsFlagged.bam	SRR1395278	@dbgap@:reads/SRP012000/SRS637541/SRX597979/SRR1395278/SRR1395278.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDLW-04A-01D_TARGET-20-PARDLW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDLW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDLW-04A-01D	DNA	EFO	SRS637541	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDLW-04A-01D A42734 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42734	SRX597979	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDLW-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARDLW-04A-01D A42734 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42734_1_lane_dupsFlagged.bam	SRR1395278	@dbgap@:reads/SRP012000/SRS637541/SRX597979/SRR1395278/SRR1395278.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDLW-04A-01D_TARGET-20-PARDLW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDLW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDLW-14A-01D	DNA	EFO	SRS635952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDLW-14A-01D A42514 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42514	SRX593914	"Specific Capture analysis of normal sample TARGET-20-PARDLW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARDLW-14A-01D A42514 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42514_1_lane_dupsFlagged.bam	SRR1386323	@dbgap@:reads/SRP012000/SRS635952/SRX593914/SRR1386323/SRR1386323.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDLW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDLW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARDLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDLW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDLW-14A-01D	DNA	EFO	SRS635952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDLW-14A-01D A42514 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42514	SRX593914	"Specific Capture analysis of normal sample TARGET-20-PARDLW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARDLW-14A-01D A42514 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42514_1_lane_dupsFlagged.bam	SRR1386323	@dbgap@:reads/SRP012000/SRS635952/SRX593914/SRR1386323/SRR1386323.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDLW-03A-01D_TARGET-20-PARDLW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDLW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDLW-14A-01D	DNA	EFO	SRS635952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDLW-14A-01D A42514 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42514	SRX593914	"Specific Capture analysis of normal sample TARGET-20-PARDLW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARDLW-14A-01D A42514 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42514_1_lane_dupsFlagged.bam	SRR1386323	@dbgap@:reads/SRP012000/SRS635952/SRX593914/SRR1386323/SRR1386323.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDLW-03A-01D_TARGET-20-PARDLW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDLW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDLW-14A-01D	DNA	EFO	SRS635952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDLW-14A-01D A42514 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42514	SRX593914	"Specific Capture analysis of normal sample TARGET-20-PARDLW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARDLW-14A-01D A42514 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42514_1_lane_dupsFlagged.bam	SRR1386323	@dbgap@:reads/SRP012000/SRS635952/SRX593914/SRR1386323/SRR1386323.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDLW-04A-01D_TARGET-20-PARDLW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDLW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDLW-14A-01D	DNA	EFO	SRS635952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDLW-14A-01D A42514 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42514	SRX593914	"Specific Capture analysis of normal sample TARGET-20-PARDLW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARDLW-14A-01D A42514 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42514_1_lane_dupsFlagged.bam	SRR1386323	@dbgap@:reads/SRP012000/SRS635952/SRX593914/SRR1386323/SRR1386323.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDLW-04A-01D_TARGET-20-PARDLW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-01D	DNA	EFO	SRS270714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDMG-09A-01D A31187 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31187	SRX573360	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDMG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARDMG-09A-01D A31187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31187_1_lane_dupsFlagged.bam	SRR1342641	@dbgap@:reads/SRP012000/SRS270714/SRX573360/SRR1342641/SRR1342641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDMG-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDMG-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-01D	DNA	EFO	SRS270714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDMG-09A-01D A31187 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31187	SRX573360	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDMG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARDMG-09A-01D A31187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31187_1_lane_dupsFlagged.bam	SRR1342641	@dbgap@:reads/SRP012000/SRS270714/SRX573360/SRR1342641/SRR1342641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDMG-09A-01D_TARGET-20-PARDMG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-01D	DNA	EFO	SRS270714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDMG-09A-01D A31187 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31187	SRX573360	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDMG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARDMG-09A-01D A31187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31187_1_lane_dupsFlagged.bam	SRR1342641	@dbgap@:reads/SRP012000/SRS270714/SRX573360/SRR1342641/SRR1342641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDMG-09A-01D_TARGET-20-PARDMG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14A-01D	DNA	EFO	SRS637473	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDMG-14A-01D A42897 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42897	SRX597898	"Specific Capture analysis of normal sample TARGET-20-PARDMG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARDMG-14A-01D A42897 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42897_1_lane_dupsFlagged.bam	SRR1395219	@dbgap@:reads/SRP012000/SRS637473/SRX597898/SRR1395219/SRR1395219.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDMG-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDMG-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14A-01D	DNA	EFO	SRS637473	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDMG-14A-01D A42897 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42897	SRX597898	"Specific Capture analysis of normal sample TARGET-20-PARDMG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARDMG-14A-01D A42897 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42897_1_lane_dupsFlagged.bam	SRR1395219	@dbgap@:reads/SRP012000/SRS637473/SRX597898/SRR1395219/SRR1395219.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDMG-09A-01D_TARGET-20-PARDMG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-14A-01D	DNA	EFO	SRS637473	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDMG-14A-01D A42897 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42897	SRX597898	"Specific Capture analysis of normal sample TARGET-20-PARDMG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARDMG-14A-01D A42897 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42897_1_lane_dupsFlagged.bam	SRR1395219	@dbgap@:reads/SRP012000/SRS637473/SRX597898/SRR1395219/SRR1395219.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDMG-09A-01D_TARGET-20-PARDMG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDPM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDPM-03A-01D	DNA	EFO	SRS633634	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDPM-03A-01D A33365 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33365	SRX587928	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDPM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARDPM-03A-01D A33365 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33365_1_lane_dupsFlagged.bam	SRR1373850	@dbgap@:reads/SRP012000/SRS633634/SRX587928/SRR1373850/SRR1373850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDPM-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDPM-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARDPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDPM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDPM-03A-01D	DNA	EFO	SRS633634	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDPM-03A-01D A33365 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33365	SRX587928	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDPM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARDPM-03A-01D A33365 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33365_1_lane_dupsFlagged.bam	SRR1373850	@dbgap@:reads/SRP012000/SRS633634/SRX587928/SRR1373850/SRR1373850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDPM-03A-01D_TARGET-20-PARDPM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDPM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDPM-03A-01D	DNA	EFO	SRS633634	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDPM-03A-01D A33365 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33365	SRX587928	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDPM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARDPM-03A-01D A33365 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33365_1_lane_dupsFlagged.bam	SRR1373850	@dbgap@:reads/SRP012000/SRS633634/SRX587928/SRR1373850/SRR1373850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDPM-03A-01D_TARGET-20-PARDPM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDPM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDPM-14A-01D	DNA	EFO	SRS635989	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDPM-14A-01D A42627 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42627	SRX593951	"Specific Capture analysis of normal sample TARGET-20-PARDPM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARDPM-14A-01D A42627 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42627_1_lane_dupsFlagged.bam	SRR1386445	@dbgap@:reads/SRP012000/SRS635989/SRX593951/SRR1386445/SRR1386445.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDPM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDPM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARDPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDPM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDPM-14A-01D	DNA	EFO	SRS635989	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDPM-14A-01D A42627 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42627	SRX593951	"Specific Capture analysis of normal sample TARGET-20-PARDPM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARDPM-14A-01D A42627 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42627_1_lane_dupsFlagged.bam	SRR1386445	@dbgap@:reads/SRP012000/SRS635989/SRX593951/SRR1386445/SRR1386445.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDPM-03A-01D_TARGET-20-PARDPM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDPM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDPM-14A-01D	DNA	EFO	SRS635989	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDPM-14A-01D A42627 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42627	SRX593951	"Specific Capture analysis of normal sample TARGET-20-PARDPM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARDPM-14A-01D A42627 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42627_1_lane_dupsFlagged.bam	SRR1386445	@dbgap@:reads/SRP012000/SRS635989/SRX593951/SRR1386445/SRR1386445.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDPM-03A-01D_TARGET-20-PARDPM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDRM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDRM-03A-01D	DNA	EFO	SRS629158	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDRM-03A-01D A33270 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33270	SRX575214	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDRM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARDRM-03A-01D A33270 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33270_1_lane_dupsFlagged.bam	SRR1346417	@dbgap@:reads/SRP012000/SRS629158/SRX575214/SRR1346417/SRR1346417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDRM-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDRM-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDRM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDRM-03A-01D	DNA	EFO	SRS629158	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDRM-03A-01D A33270 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33270	SRX575214	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDRM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARDRM-03A-01D A33270 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33270_1_lane_dupsFlagged.bam	SRR1346417	@dbgap@:reads/SRP012000/SRS629158/SRX575214/SRR1346417/SRR1346417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDRM-03A-01D_TARGET-20-PARDRM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDRM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDRM-03A-01D	DNA	EFO	SRS629158	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDRM-03A-01D A33270 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33270	SRX575214	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDRM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARDRM-03A-01D A33270 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33270_1_lane_dupsFlagged.bam	SRR1346417	@dbgap@:reads/SRP012000/SRS629158/SRX575214/SRR1346417/SRR1346417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDRM-03A-01D_TARGET-20-PARDRM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDRM-14A-01D	DNA	EFO	SRS636022	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDRM-14A-01D A42608 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42608	SRX593999	"Specific Capture analysis of normal sample TARGET-20-PARDRM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARDRM-14A-01D A42608 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42608_1_lane_dupsFlagged.bam	SRR1386457	@dbgap@:reads/SRP012000/SRS636022/SRX593999/SRR1386457/SRR1386457.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDRM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDRM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDRM-14A-01D	DNA	EFO	SRS636022	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDRM-14A-01D A42608 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42608	SRX593999	"Specific Capture analysis of normal sample TARGET-20-PARDRM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARDRM-14A-01D A42608 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42608_1_lane_dupsFlagged.bam	SRR1386457	@dbgap@:reads/SRP012000/SRS636022/SRX593999/SRR1386457/SRR1386457.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDRM-03A-01D_TARGET-20-PARDRM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDRM-14A-01D	DNA	EFO	SRS636022	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDRM-14A-01D A42608 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42608	SRX593999	"Specific Capture analysis of normal sample TARGET-20-PARDRM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARDRM-14A-01D A42608 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42608_1_lane_dupsFlagged.bam	SRR1386457	@dbgap@:reads/SRP012000/SRS636022/SRX593999/SRR1386457/SRR1386457.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDRM-03A-01D_TARGET-20-PARDRM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDYL-09A-01D	DNA	EFO	SRS635513	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDYL-09A-01D A41743 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41743	SRX593235	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDYL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARDYL-09A-01D A41743 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41743_1_lane_dupsFlagged.bam	SRR1385603	@dbgap@:reads/SRP012000/SRS635513/SRX593235/SRR1385603/SRR1385603.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDYL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDYL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARDYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDYL-09A-01D	DNA	EFO	SRS635513	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDYL-09A-01D A41743 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41743	SRX593235	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDYL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARDYL-09A-01D A41743 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41743_1_lane_dupsFlagged.bam	SRR1385603	@dbgap@:reads/SRP012000/SRS635513/SRX593235/SRR1385603/SRR1385603.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDYL-09A-01D_TARGET-20-PARDYL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDYL-09A-01D	DNA	EFO	SRS635513	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDYL-09A-01D A41743 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41743	SRX593235	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDYL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARDYL-09A-01D A41743 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41743_1_lane_dupsFlagged.bam	SRR1385603	@dbgap@:reads/SRP012000/SRS635513/SRX593235/SRR1385603/SRR1385603.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDYL-09A-01D_TARGET-20-PARDYL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDYL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDYL-14A-01D	DNA	EFO	SRS635985	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDYL-14A-01D A42609 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42609	SRX593950	"Specific Capture analysis of normal sample TARGET-20-PARDYL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARDYL-14A-01D A42609 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42609_1_lane_dupsFlagged.bam	SRR1386482	@dbgap@:reads/SRP012000/SRS635985/SRX593950/SRR1386482/SRR1386482.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDYL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDYL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARDYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDYL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDYL-14A-01D	DNA	EFO	SRS635985	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDYL-14A-01D A42609 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42609	SRX593950	"Specific Capture analysis of normal sample TARGET-20-PARDYL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARDYL-14A-01D A42609 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42609_1_lane_dupsFlagged.bam	SRR1386482	@dbgap@:reads/SRP012000/SRS635985/SRX593950/SRR1386482/SRR1386482.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDYL-09A-01D_TARGET-20-PARDYL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDYL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDYL-14A-01D	DNA	EFO	SRS635985	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDYL-14A-01D A42609 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42609	SRX593950	"Specific Capture analysis of normal sample TARGET-20-PARDYL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARDYL-14A-01D A42609 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42609_1_lane_dupsFlagged.bam	SRR1386482	@dbgap@:reads/SRP012000/SRS635985/SRX593950/SRR1386482/SRR1386482.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDYL-09A-01D_TARGET-20-PARDYL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARDYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDYW-09A-01D	DNA	EFO	SRS635477	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDYW-09A-01D A41744 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41744	SRX593199	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDYW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARDYW-09A-01D A41744 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41744_1_lane_dupsFlagged.bam	SRR1385646	@dbgap@:reads/SRP012000/SRS635477/SRX593199/SRR1385646/SRR1385646.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDYW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDYW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARDZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDZW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDZW-09A-01D	DNA	EFO	SRS628906	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDZW-09A-01D A32320 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32320	SRX574962	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDZW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARDZW-09A-01D A32320 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32320_1_lane_dupsFlagged.bam	SRR1346175	@dbgap@:reads/SRP012000/SRS628906/SRX574962/SRR1346175/SRR1346175.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDZW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDZW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARDZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDZW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDZW-09A-01D	DNA	EFO	SRS628906	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDZW-09A-01D A32320 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32320	SRX574962	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDZW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARDZW-09A-01D A32320 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32320_1_lane_dupsFlagged.bam	SRR1346175	@dbgap@:reads/SRP012000/SRS628906/SRX574962/SRR1346175/SRR1346175.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDZW-09A-01D_TARGET-20-PARDZW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDZW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDZW-09A-01D	DNA	EFO	SRS628906	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDZW-09A-01D A32320 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32320	SRX574962	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARDZW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARDZW-09A-01D A32320 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32320_1_lane_dupsFlagged.bam	SRR1346175	@dbgap@:reads/SRP012000/SRS628906/SRX574962/SRR1346175/SRR1346175.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDZW-09A-01D_TARGET-20-PARDZW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARDZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDZW-14A-01D	DNA	EFO	SRS635960	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDZW-14A-01D A42610 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42610	SRX593922	"Specific Capture analysis of normal sample TARGET-20-PARDZW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARDZW-14A-01D A42610 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42610_1_lane_dupsFlagged.bam	SRR1386431	@dbgap@:reads/SRP012000/SRS635960/SRX593922/SRR1386431/SRR1386431.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARDZW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARDZW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARDZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDZW-14A-01D	DNA	EFO	SRS635960	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDZW-14A-01D A42610 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42610	SRX593922	"Specific Capture analysis of normal sample TARGET-20-PARDZW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARDZW-14A-01D A42610 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42610_1_lane_dupsFlagged.bam	SRR1386431	@dbgap@:reads/SRP012000/SRS635960/SRX593922/SRR1386431/SRR1386431.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDZW-09A-01D_TARGET-20-PARDZW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARDZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDZW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDZW-14A-01D	DNA	EFO	SRS635960	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDZW-14A-01D A42610 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42610	SRX593922	"Specific Capture analysis of normal sample TARGET-20-PARDZW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARDZW-14A-01D A42610 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42610_1_lane_dupsFlagged.bam	SRR1386431	@dbgap@:reads/SRP012000/SRS635960/SRX593922/SRR1386431/SRR1386431.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARDZW-09A-01D_TARGET-20-PARDZW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAREEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAREEC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREEC-09A-01D	DNA	EFO	SRS635609	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREEC-09A-01D A41924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41924	SRX593428	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAREEC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAREEC-09A-01D A41924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41924_1_lane_dupsFlagged.bam	SRR1385900	@dbgap@:reads/SRP012000/SRS635609/SRX593428/SRR1385900/SRR1385900.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAREEC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAREEC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAREEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAREEC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREEC-09A-01D	DNA	EFO	SRS635609	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREEC-09A-01D A41924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41924	SRX593428	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAREEC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAREEC-09A-01D A41924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41924_1_lane_dupsFlagged.bam	SRR1385900	@dbgap@:reads/SRP012000/SRS635609/SRX593428/SRR1385900/SRR1385900.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAREEC-09A-01D_TARGET-20-PAREEC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAREEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAREEC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREEC-09A-01D	DNA	EFO	SRS635609	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREEC-09A-01D A41924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41924	SRX593428	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAREEC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PAREEC-09A-01D A41924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41924_1_lane_dupsFlagged.bam	SRR1385900	@dbgap@:reads/SRP012000/SRS635609/SRX593428/SRR1385900/SRR1385900.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAREEC-09A-01D_TARGET-20-PAREEC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAREEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAREEC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREEC-14A-01D	DNA	EFO	SRS637481	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREEC-14A-01D A42895 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42895	SRX597910	"Specific Capture analysis of normal sample TARGET-20-PAREEC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAREEC-14A-01D A42895 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42895_1_lane_dupsFlagged.bam	SRR1395184	@dbgap@:reads/SRP012000/SRS637481/SRX597910/SRR1395184/SRR1395184.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAREEC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAREEC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAREEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAREEC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREEC-14A-01D	DNA	EFO	SRS637481	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREEC-14A-01D A42895 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42895	SRX597910	"Specific Capture analysis of normal sample TARGET-20-PAREEC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAREEC-14A-01D A42895 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42895_1_lane_dupsFlagged.bam	SRR1395184	@dbgap@:reads/SRP012000/SRS637481/SRX597910/SRR1395184/SRR1395184.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAREEC-09A-01D_TARGET-20-PAREEC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAREEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAREEC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREEC-14A-01D	DNA	EFO	SRS637481	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREEC-14A-01D A42895 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42895	SRX597910	"Specific Capture analysis of normal sample TARGET-20-PAREEC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAREEC-14A-01D A42895 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42895_1_lane_dupsFlagged.bam	SRR1395184	@dbgap@:reads/SRP012000/SRS637481/SRX597910/SRR1395184/SRR1395184.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAREEC-09A-01D_TARGET-20-PAREEC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAREFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAREFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREFM-09A-02D	DNA	EFO	SRS628740	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREFM-09A-02D A32184 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32184	SRX574435	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAREFM-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAREFM-09A-02D A32184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32184_1_lane_dupsFlagged.bam	SRR1344918	@dbgap@:reads/SRP012000/SRS628740/SRX574435/SRR1344918/SRR1344918.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAREFM-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAREFM-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAREFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAREFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREFM-09A-02D	DNA	EFO	SRS628740	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREFM-09A-02D A32184 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32184	SRX574435	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAREFM-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAREFM-09A-02D A32184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32184_1_lane_dupsFlagged.bam	SRR1344918	@dbgap@:reads/SRP012000/SRS628740/SRX574435/SRR1344918/SRR1344918.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAREFM-09A-02D_TARGET-20-PAREFM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAREFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAREFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREFM-09A-02D	DNA	EFO	SRS628740	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREFM-09A-02D A32184 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32184	SRX574435	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAREFM-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PAREFM-09A-02D A32184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32184_1_lane_dupsFlagged.bam	SRR1344918	@dbgap@:reads/SRP012000/SRS628740/SRX574435/SRR1344918/SRR1344918.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAREFM-09A-02D_TARGET-20-PAREFM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAREFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAREFM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREFM-14A-01D	DNA	EFO	SRS635888	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREFM-14A-01D A42544 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42544	SRX593849	"Specific Capture analysis of normal sample TARGET-20-PAREFM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAREFM-14A-01D A42544 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42544_1_lane_dupsFlagged.bam	SRR1386379	@dbgap@:reads/SRP012000/SRS635888/SRX593849/SRR1386379/SRR1386379.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAREFM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAREFM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAREFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAREFM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREFM-14A-01D	DNA	EFO	SRS635888	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREFM-14A-01D A42544 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42544	SRX593849	"Specific Capture analysis of normal sample TARGET-20-PAREFM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAREFM-14A-01D A42544 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42544_1_lane_dupsFlagged.bam	SRR1386379	@dbgap@:reads/SRP012000/SRS635888/SRX593849/SRR1386379/SRR1386379.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAREFM-09A-02D_TARGET-20-PAREFM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAREFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAREFM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREFM-14A-01D	DNA	EFO	SRS635888	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREFM-14A-01D A42544 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42544	SRX593849	"Specific Capture analysis of normal sample TARGET-20-PAREFM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PAREFM-14A-01D A42544 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42544_1_lane_dupsFlagged.bam	SRR1386379	@dbgap@:reads/SRP012000/SRS635888/SRX593849/SRR1386379/SRR1386379.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAREFM-09A-02D_TARGET-20-PAREFM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAREHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAREHK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREHK-03A-01D	DNA	EFO	SRS633676	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREHK-03A-01D A33386 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33386	SRX587970	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAREHK-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PAREHK-03A-01D A33386 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33386_1_lane_dupsFlagged.bam	SRR1373825	@dbgap@:reads/SRP012000/SRS633676/SRX587970/SRR1373825/SRR1373825.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAREHK-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAREHK-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAREHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAREHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREHP-09A-01D	DNA	EFO	SRS635432	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREHP-09A-01D A41745 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41745	SRX593154	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAREHP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAREHP-09A-01D A41745 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41745_1_lane_dupsFlagged.bam	SRR1385644	@dbgap@:reads/SRP012000/SRS635432/SRX593154/SRR1385644/SRR1385644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAREHP-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAREHP-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PAREHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAREHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREHP-09A-01D	DNA	EFO	SRS635432	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREHP-09A-01D A41745 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41745	SRX593154	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAREHP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAREHP-09A-01D A41745 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41745_1_lane_dupsFlagged.bam	SRR1385644	@dbgap@:reads/SRP012000/SRS635432/SRX593154/SRR1385644/SRR1385644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAREHP-09A-01D_TARGET-20-PAREHP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAREHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAREHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREHP-09A-01D	DNA	EFO	SRS635432	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREHP-09A-01D A41745 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41745	SRX593154	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAREHP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAREHP-09A-01D A41745 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41745_1_lane_dupsFlagged.bam	SRR1385644	@dbgap@:reads/SRP012000/SRS635432/SRX593154/SRR1385644/SRR1385644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAREHP-09A-01D_TARGET-20-PAREHP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAREHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAREHP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREHP-10A-01D	DNA	EFO	SRS635758	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREHP-10A-01D A42339 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42339	SRX593593	"Specific Capture analysis of normal sample TARGET-20-PAREHP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAREHP-10A-01D A42339 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42339_1_lane_dupsFlagged.bam	SRR1386035	@dbgap@:reads/SRP012000/SRS635758/SRX593593/SRR1386035/SRR1386035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAREHP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAREHP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PAREHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAREHP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREHP-10A-01D	DNA	EFO	SRS635758	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREHP-10A-01D A42339 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42339	SRX593593	"Specific Capture analysis of normal sample TARGET-20-PAREHP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAREHP-10A-01D A42339 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42339_1_lane_dupsFlagged.bam	SRR1386035	@dbgap@:reads/SRP012000/SRS635758/SRX593593/SRR1386035/SRR1386035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAREHP-09A-01D_TARGET-20-PAREHP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PAREHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAREHP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREHP-10A-01D	DNA	EFO	SRS635758	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREHP-10A-01D A42339 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42339	SRX593593	"Specific Capture analysis of normal sample TARGET-20-PAREHP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PAREHP-10A-01D A42339 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42339_1_lane_dupsFlagged.bam	SRR1386035	@dbgap@:reads/SRP012000/SRS635758/SRX593593/SRR1386035/SRR1386035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PAREHP-09A-01D_TARGET-20-PAREHP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-03D	DNA	EFO	SRS628750	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARENB-09A-03D A32185 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32185	SRX574446	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARENB-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARENB-09A-03D A32185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32185_1_lane_dupsFlagged.bam	SRR1344876	@dbgap@:reads/SRP012000/SRS628750/SRX574446/SRR1344876/SRR1344876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARENB-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARENB-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-03D	DNA	EFO	SRS628750	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARENB-09A-03D A32185 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32185	SRX574446	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARENB-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARENB-09A-03D A32185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32185_1_lane_dupsFlagged.bam	SRR1344876	@dbgap@:reads/SRP012000/SRS628750/SRX574446/SRR1344876/SRR1344876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARENB-09A-03D_TARGET-20-PARENB-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-03D	DNA	EFO	SRS628750	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARENB-09A-03D A32185 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32185	SRX574446	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARENB-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARENB-09A-03D A32185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32185_1_lane_dupsFlagged.bam	SRR1344876	@dbgap@:reads/SRP012000/SRS628750/SRX574446/SRR1344876/SRR1344876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARENB-09A-03D_TARGET-20-PARENB-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-14A-02D	DNA	EFO	SRS489723	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARENB-14A-02D A42782 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42782	SRX597843	"Specific Capture analysis of normal sample TARGET-20-PARENB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARENB-14A-02D A42782 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42782_1_lane_dupsFlagged.bam	SRR1395053	@dbgap@:reads/SRP012000/SRS489723/SRX597843/SRR1395053/SRR1395053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARENB-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARENB-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-14A-02D	DNA	EFO	SRS489723	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARENB-14A-02D A42782 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42782	SRX597843	"Specific Capture analysis of normal sample TARGET-20-PARENB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARENB-14A-02D A42782 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42782_1_lane_dupsFlagged.bam	SRR1395053	@dbgap@:reads/SRP012000/SRS489723/SRX597843/SRR1395053/SRR1395053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARENB-09A-03D_TARGET-20-PARENB-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-14A-02D	DNA	EFO	SRS489723	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARENB-14A-02D A42782 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42782	SRX597843	"Specific Capture analysis of normal sample TARGET-20-PARENB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARENB-14A-02D A42782 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42782_1_lane_dupsFlagged.bam	SRR1395053	@dbgap@:reads/SRP012000/SRS489723/SRX597843/SRR1395053/SRR1395053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARENB-09A-03D_TARGET-20-PARENB-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARERV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARERV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARERV-09A-02D	DNA	EFO	SRS628713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARERV-09A-02D A32186 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32186	SRX574406	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARERV-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARERV-09A-02D A32186 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32186_1_lane_dupsFlagged.bam	SRR1344911	@dbgap@:reads/SRP012000/SRS628713/SRX574406/SRR1344911/SRR1344911.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARERV-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARERV-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARERV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARERV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARERV-09A-02D	DNA	EFO	SRS628713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARERV-09A-02D A32186 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32186	SRX574406	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARERV-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARERV-09A-02D A32186 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32186_1_lane_dupsFlagged.bam	SRR1344911	@dbgap@:reads/SRP012000/SRS628713/SRX574406/SRR1344911/SRR1344911.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARERV-09A-02D_TARGET-20-PARERV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARERV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARERV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARERV-09A-02D	DNA	EFO	SRS628713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARERV-09A-02D A32186 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32186	SRX574406	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARERV-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARERV-09A-02D A32186 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32186_1_lane_dupsFlagged.bam	SRR1344911	@dbgap@:reads/SRP012000/SRS628713/SRX574406/SRR1344911/SRR1344911.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARERV-09A-02D_TARGET-20-PARERV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARERV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARERV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARERV-14A-01D	DNA	EFO	SRS637440	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARERV-14A-01D A42783 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42783	SRX597852	"Specific Capture analysis of normal sample TARGET-20-PARERV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARERV-14A-01D A42783 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42783_1_lane_dupsFlagged.bam	SRR1395123	@dbgap@:reads/SRP012000/SRS637440/SRX597852/SRR1395123/SRR1395123.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARERV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARERV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARERV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARERV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARERV-14A-01D	DNA	EFO	SRS637440	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARERV-14A-01D A42783 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42783	SRX597852	"Specific Capture analysis of normal sample TARGET-20-PARERV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARERV-14A-01D A42783 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42783_1_lane_dupsFlagged.bam	SRR1395123	@dbgap@:reads/SRP012000/SRS637440/SRX597852/SRR1395123/SRR1395123.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARERV-09A-02D_TARGET-20-PARERV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARERV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARERV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARERV-14A-01D	DNA	EFO	SRS637440	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARERV-14A-01D A42783 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42783	SRX597852	"Specific Capture analysis of normal sample TARGET-20-PARERV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARERV-14A-01D A42783 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42783_1_lane_dupsFlagged.bam	SRR1395123	@dbgap@:reads/SRP012000/SRS637440/SRX597852/SRR1395123/SRR1395123.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARERV-09A-02D_TARGET-20-PARERV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PAREWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PAREWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREWJ-09A-01D	DNA	EFO	SRS635480	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREWJ-09A-01D A41746 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41746	SRX593201	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAREWJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PAREWJ-09A-01D A41746 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41746_1_lane_dupsFlagged.bam	SRR1385597	@dbgap@:reads/SRP012000/SRS635480/SRX593201/SRR1385597/SRR1385597.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PAREWJ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PAREWJ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01D	DNA	EFO	SRS270717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-04A-01D A42244 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42244	SRX597719	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFAL-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARFAL-04A-01D A42244 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42244_1_lane_dupsFlagged.bam	SRR1394956	@dbgap@:reads/SRP012000/SRS270717/SRX597719/SRR1394956/SRR1394956.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFAL-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFAL-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01D	DNA	EFO	SRS270717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-04A-01D A42244 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42244	SRX597719	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFAL-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARFAL-04A-01D A42244 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42244_1_lane_dupsFlagged.bam	SRR1394956	@dbgap@:reads/SRP012000/SRS270717/SRX597719/SRR1394956/SRR1394956.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFAL-04A-01D_TARGET-20-PARFAL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01D	DNA	EFO	SRS270717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-04A-01D A42244 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42244	SRX597719	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFAL-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARFAL-04A-01D A42244 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42244_1_lane_dupsFlagged.bam	SRR1394956	@dbgap@:reads/SRP012000/SRS270717/SRX597719/SRR1394956/SRR1394956.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFAL-04A-01D_TARGET-20-PARFAL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-01D	DNA	EFO	SRS628771	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-09A-01D A32187 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32187	SRX574468	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFAL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARFAL-09A-01D A32187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32187_1_lane_dupsFlagged.bam	SRR1344867	@dbgap@:reads/SRP012000/SRS628771/SRX574468/SRR1344867/SRR1344867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFAL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFAL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-01D	DNA	EFO	SRS628771	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-09A-01D A32187 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32187	SRX574468	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFAL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARFAL-09A-01D A32187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32187_1_lane_dupsFlagged.bam	SRR1344867	@dbgap@:reads/SRP012000/SRS628771/SRX574468/SRR1344867/SRR1344867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFAL-09A-01D_TARGET-20-PARFAL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-01D	DNA	EFO	SRS628771	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-09A-01D A32187 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32187	SRX574468	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFAL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARFAL-09A-01D A32187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32187_1_lane_dupsFlagged.bam	SRR1344867	@dbgap@:reads/SRP012000/SRS628771/SRX574468/SRR1344867/SRR1344867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFAL-09A-01D_TARGET-20-PARFAL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-01D	DNA	EFO	SRS636005	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-14A-01D A42565 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42565	SRX593972	"Specific Capture analysis of normal sample TARGET-20-PARFAL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARFAL-14A-01D A42565 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42565_1_lane_dupsFlagged.bam	SRR1386465	@dbgap@:reads/SRP012000/SRS636005/SRX593972/SRR1386465/SRR1386465.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFAL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFAL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-01D	DNA	EFO	SRS636005	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-14A-01D A42565 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42565	SRX593972	"Specific Capture analysis of normal sample TARGET-20-PARFAL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARFAL-14A-01D A42565 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42565_1_lane_dupsFlagged.bam	SRR1386465	@dbgap@:reads/SRP012000/SRS636005/SRX593972/SRR1386465/SRR1386465.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFAL-04A-01D_TARGET-20-PARFAL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-01D	DNA	EFO	SRS636005	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-14A-01D A42565 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42565	SRX593972	"Specific Capture analysis of normal sample TARGET-20-PARFAL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARFAL-14A-01D A42565 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42565_1_lane_dupsFlagged.bam	SRR1386465	@dbgap@:reads/SRP012000/SRS636005/SRX593972/SRR1386465/SRR1386465.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFAL-04A-01D_TARGET-20-PARFAL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-01D	DNA	EFO	SRS636005	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-14A-01D A42565 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42565	SRX593972	"Specific Capture analysis of normal sample TARGET-20-PARFAL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARFAL-14A-01D A42565 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42565_1_lane_dupsFlagged.bam	SRR1386465	@dbgap@:reads/SRP012000/SRS636005/SRX593972/SRR1386465/SRR1386465.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFAL-09A-01D_TARGET-20-PARFAL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-14A-01D	DNA	EFO	SRS636005	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-14A-01D A42565 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42565	SRX593972	"Specific Capture analysis of normal sample TARGET-20-PARFAL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARFAL-14A-01D A42565 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42565_1_lane_dupsFlagged.bam	SRR1386465	@dbgap@:reads/SRP012000/SRS636005/SRX593972/SRR1386465/SRR1386465.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFAL-09A-01D_TARGET-20-PARFAL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-02D	DNA	EFO	SRS628730	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFGK-09A-02D A32188 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32188	SRX574425	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFGK-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARFGK-09A-02D A32188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32188_1_lane_dupsFlagged.bam	SRR1344896	@dbgap@:reads/SRP012000/SRS628730/SRX574425/SRR1344896/SRR1344896.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFGK-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFGK-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-03A-02D	DNA	EFO	SRS628686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFIW-03A-02D A32189 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32189	SRX574379	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFIW-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARFIW-03A-02D A32189 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32189_1_lane_dupsFlagged.bam	SRR1344853	@dbgap@:reads/SRP012000/SRS628686/SRX574379/SRR1344853/SRR1344853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFIW-03A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFIW-03A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-03A-02D	DNA	EFO	SRS628686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFIW-03A-02D A32189 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32189	SRX574379	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFIW-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARFIW-03A-02D A32189 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32189_1_lane_dupsFlagged.bam	SRR1344853	@dbgap@:reads/SRP012000/SRS628686/SRX574379/SRR1344853/SRR1344853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFIW-03A-02D_TARGET-20-PARFIW-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-03A-02D	DNA	EFO	SRS628686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFIW-03A-02D A32189 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32189	SRX574379	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFIW-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARFIW-03A-02D A32189 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32189_1_lane_dupsFlagged.bam	SRR1344853	@dbgap@:reads/SRP012000/SRS628686/SRX574379/SRR1344853/SRR1344853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFIW-03A-02D_TARGET-20-PARFIW-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-14A-03D	DNA	EFO	SRS635919	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFIW-14A-03D A42520 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42520	SRX593880	"Specific Capture analysis of normal sample TARGET-20-PARFIW-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARFIW-14A-03D A42520 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42520_1_lane_dupsFlagged.bam	SRR1386410	@dbgap@:reads/SRP012000/SRS635919/SRX593880/SRR1386410/SRR1386410.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFIW-14A-03D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFIW-14A-03D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-14A-03D	DNA	EFO	SRS635919	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFIW-14A-03D A42520 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42520	SRX593880	"Specific Capture analysis of normal sample TARGET-20-PARFIW-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARFIW-14A-03D A42520 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42520_1_lane_dupsFlagged.bam	SRR1386410	@dbgap@:reads/SRP012000/SRS635919/SRX593880/SRR1386410/SRR1386410.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFIW-03A-02D_TARGET-20-PARFIW-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFIW-14A-03D	DNA	EFO	SRS635919	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFIW-14A-03D A42520 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42520	SRX593880	"Specific Capture analysis of normal sample TARGET-20-PARFIW-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARFIW-14A-03D A42520 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42520_1_lane_dupsFlagged.bam	SRR1386410	@dbgap@:reads/SRP012000/SRS635919/SRX593880/SRR1386410/SRR1386410.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFIW-03A-02D_TARGET-20-PARFIW-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFJN-09A-01D	DNA	EFO	SRS635628	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFJN-09A-01D A41923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41923	SRX593450	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFJN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARFJN-09A-01D A41923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41923_1_lane_dupsFlagged.bam	SRR1385875	@dbgap@:reads/SRP012000/SRS635628/SRX593450/SRR1385875/SRR1385875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFJN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFJN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARFJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFJN-09A-01D	DNA	EFO	SRS635628	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFJN-09A-01D A41923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41923	SRX593450	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFJN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARFJN-09A-01D A41923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41923_1_lane_dupsFlagged.bam	SRR1385875	@dbgap@:reads/SRP012000/SRS635628/SRX593450/SRR1385875/SRR1385875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFJN-09A-01D_TARGET-20-PARFJN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFJN-09A-01D	DNA	EFO	SRS635628	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFJN-09A-01D A41923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41923	SRX593450	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFJN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARFJN-09A-01D A41923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41923_1_lane_dupsFlagged.bam	SRR1385875	@dbgap@:reads/SRP012000/SRS635628/SRX593450/SRR1385875/SRR1385875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFJN-09A-01D_TARGET-20-PARFJN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFJN-14A-01D	DNA	EFO	SRS637382	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFJN-14A-01D A42784 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42784	SRX597787	"Specific Capture analysis of normal sample TARGET-20-PARFJN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARFJN-14A-01D A42784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42784_1_lane_dupsFlagged.bam	SRR1395117	@dbgap@:reads/SRP012000/SRS637382/SRX597787/SRR1395117/SRR1395117.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFJN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFJN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARFJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFJN-14A-01D	DNA	EFO	SRS637382	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFJN-14A-01D A42784 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42784	SRX597787	"Specific Capture analysis of normal sample TARGET-20-PARFJN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARFJN-14A-01D A42784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42784_1_lane_dupsFlagged.bam	SRR1395117	@dbgap@:reads/SRP012000/SRS637382/SRX597787/SRR1395117/SRR1395117.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFJN-09A-01D_TARGET-20-PARFJN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFJN-14A-01D	DNA	EFO	SRS637382	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFJN-14A-01D A42784 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42784	SRX597787	"Specific Capture analysis of normal sample TARGET-20-PARFJN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARFJN-14A-01D A42784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42784_1_lane_dupsFlagged.bam	SRR1395117	@dbgap@:reads/SRP012000/SRS637382/SRX597787/SRR1395117/SRR1395117.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFJN-09A-01D_TARGET-20-PARFJN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFKS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFKS-09A-01D	DNA	EFO	SRS635464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFKS-09A-01D A41747 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41747	SRX593186	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFKS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARFKS-09A-01D A41747 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41747_1_lane_dupsFlagged.bam	SRR1385658	@dbgap@:reads/SRP012000/SRS635464/SRX593186/SRR1385658/SRR1385658.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFKS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFKS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARFKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFKS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFKS-09A-01D	DNA	EFO	SRS635464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFKS-09A-01D A41747 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41747	SRX593186	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFKS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARFKS-09A-01D A41747 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41747_1_lane_dupsFlagged.bam	SRR1385658	@dbgap@:reads/SRP012000/SRS635464/SRX593186/SRR1385658/SRR1385658.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFKS-09A-01D_TARGET-20-PARFKS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFKS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFKS-09A-01D	DNA	EFO	SRS635464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFKS-09A-01D A41747 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41747	SRX593186	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFKS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARFKS-09A-01D A41747 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41747_1_lane_dupsFlagged.bam	SRR1385658	@dbgap@:reads/SRP012000/SRS635464/SRX593186/SRR1385658/SRR1385658.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFKS-09A-01D_TARGET-20-PARFKS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFKS-14A-01D	DNA	EFO	SRS635634	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFKS-14A-01D A41663 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41663	SRX593456	"Specific Capture analysis of normal sample TARGET-20-PARFKS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARFKS-14A-01D A41663 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41663_1_lane_dupsFlagged.bam	SRR1386002	@dbgap@:reads/SRP012000/SRS635634/SRX593456/SRR1386002/SRR1386002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFKS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFKS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARFKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFKS-14A-01D	DNA	EFO	SRS635634	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFKS-14A-01D A41663 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41663	SRX593456	"Specific Capture analysis of normal sample TARGET-20-PARFKS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARFKS-14A-01D A41663 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41663_1_lane_dupsFlagged.bam	SRR1386002	@dbgap@:reads/SRP012000/SRS635634/SRX593456/SRR1386002/SRR1386002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFKS-09A-01D_TARGET-20-PARFKS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFKS-14A-01D	DNA	EFO	SRS635634	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFKS-14A-01D A41663 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41663	SRX593456	"Specific Capture analysis of normal sample TARGET-20-PARFKS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARFKS-14A-01D A41663 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41663_1_lane_dupsFlagged.bam	SRR1386002	@dbgap@:reads/SRP012000/SRS635634/SRX593456/SRR1386002/SRR1386002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFKS-09A-01D_TARGET-20-PARFKS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFLB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFLB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFLB-09A-01D	DNA	EFO	SRS633684	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFLB-09A-01D A33387 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33387	SRX587978	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFLB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARFLB-09A-01D A33387 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33387_1_lane_dupsFlagged.bam	SRR1373774	@dbgap@:reads/SRP012000/SRS633684/SRX587978/SRR1373774/SRR1373774.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFLB-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFLB-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARFLB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFLB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFLB-09A-01D	DNA	EFO	SRS633684	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFLB-09A-01D A33387 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33387	SRX587978	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFLB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARFLB-09A-01D A33387 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33387_1_lane_dupsFlagged.bam	SRR1373774	@dbgap@:reads/SRP012000/SRS633684/SRX587978/SRR1373774/SRR1373774.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFLB-09A-01D_TARGET-20-PARFLB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFLB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFLB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFLB-09A-01D	DNA	EFO	SRS633684	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFLB-09A-01D A33387 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33387	SRX587978	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFLB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARFLB-09A-01D A33387 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33387_1_lane_dupsFlagged.bam	SRR1373774	@dbgap@:reads/SRP012000/SRS633684/SRX587978/SRR1373774/SRR1373774.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFLB-09A-01D_TARGET-20-PARFLB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFLB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFLB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFLB-14A-01D	DNA	EFO	SRS635638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFLB-14A-01D A41685 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41685	SRX593460	"Specific Capture analysis of normal sample TARGET-20-PARFLB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARFLB-14A-01D A41685 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41685_1_lane_dupsFlagged.bam	SRR1385928	@dbgap@:reads/SRP012000/SRS635638/SRX593460/SRR1385928/SRR1385928.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFLB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFLB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARFLB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFLB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFLB-14A-01D	DNA	EFO	SRS635638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFLB-14A-01D A41685 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41685	SRX593460	"Specific Capture analysis of normal sample TARGET-20-PARFLB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARFLB-14A-01D A41685 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41685_1_lane_dupsFlagged.bam	SRR1385928	@dbgap@:reads/SRP012000/SRS635638/SRX593460/SRR1385928/SRR1385928.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFLB-09A-01D_TARGET-20-PARFLB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFLB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFLB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFLB-14A-01D	DNA	EFO	SRS635638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFLB-14A-01D A41685 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41685	SRX593460	"Specific Capture analysis of normal sample TARGET-20-PARFLB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARFLB-14A-01D A41685 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41685_1_lane_dupsFlagged.bam	SRR1385928	@dbgap@:reads/SRP012000/SRS635638/SRX593460/SRR1385928/SRR1385928.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFLB-09A-01D_TARGET-20-PARFLB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFMY-09A-01D	DNA	EFO	SRS633653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFMY-09A-01D A33388 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33388	SRX587947	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFMY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARFMY-09A-01D A33388 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33388_1_lane_dupsFlagged.bam	SRR1373777	@dbgap@:reads/SRP012000/SRS633653/SRX587947/SRR1373777/SRR1373777.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFMY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFMY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARFMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFMY-09A-01D	DNA	EFO	SRS633653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFMY-09A-01D A33388 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33388	SRX587947	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFMY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARFMY-09A-01D A33388 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33388_1_lane_dupsFlagged.bam	SRR1373777	@dbgap@:reads/SRP012000/SRS633653/SRX587947/SRR1373777/SRR1373777.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFMY-09A-01D_TARGET-20-PARFMY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFMY-09A-01D	DNA	EFO	SRS633653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFMY-09A-01D A33388 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33388	SRX587947	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFMY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARFMY-09A-01D A33388 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33388_1_lane_dupsFlagged.bam	SRR1373777	@dbgap@:reads/SRP012000/SRS633653/SRX587947/SRR1373777/SRR1373777.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFMY-09A-01D_TARGET-20-PARFMY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFMY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFMY-14A-01D	DNA	EFO	SRS637472	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFMY-14A-01D A42896 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42896	SRX597895	"Specific Capture analysis of normal sample TARGET-20-PARFMY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARFMY-14A-01D A42896 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42896_1_lane_dupsFlagged.bam	SRR1395223	@dbgap@:reads/SRP012000/SRS637472/SRX597895/SRR1395223/SRR1395223.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFMY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFMY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARFMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFMY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFMY-14A-01D	DNA	EFO	SRS637472	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFMY-14A-01D A42896 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42896	SRX597895	"Specific Capture analysis of normal sample TARGET-20-PARFMY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARFMY-14A-01D A42896 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42896_1_lane_dupsFlagged.bam	SRR1395223	@dbgap@:reads/SRP012000/SRS637472/SRX597895/SRR1395223/SRR1395223.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFMY-09A-01D_TARGET-20-PARFMY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFMY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFMY-14A-01D	DNA	EFO	SRS637472	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFMY-14A-01D A42896 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42896	SRX597895	"Specific Capture analysis of normal sample TARGET-20-PARFMY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARFMY-14A-01D A42896 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42896_1_lane_dupsFlagged.bam	SRR1395223	@dbgap@:reads/SRP012000/SRS637472/SRX597895/SRR1395223/SRR1395223.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFMY-09A-01D_TARGET-20-PARFMY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFPI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFPI-09A-01D	DNA	EFO	SRS635484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFPI-09A-01D A41726 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41726	SRX593205	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFPI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARFPI-09A-01D A41726 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41726_1_lane_dupsFlagged.bam	SRR1385667	@dbgap@:reads/SRP012000/SRS635484/SRX593205/SRR1385667/SRR1385667.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFPI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFPI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARFPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFPI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFPI-09A-01D	DNA	EFO	SRS635484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFPI-09A-01D A41726 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41726	SRX593205	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFPI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARFPI-09A-01D A41726 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41726_1_lane_dupsFlagged.bam	SRR1385667	@dbgap@:reads/SRP012000/SRS635484/SRX593205/SRR1385667/SRR1385667.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFPI-09A-01D_TARGET-20-PARFPI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFPI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFPI-09A-01D	DNA	EFO	SRS635484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFPI-09A-01D A41726 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41726	SRX593205	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFPI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARFPI-09A-01D A41726 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41726_1_lane_dupsFlagged.bam	SRR1385667	@dbgap@:reads/SRP012000/SRS635484/SRX593205/SRR1385667/SRR1385667.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFPI-09A-01D_TARGET-20-PARFPI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFPI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFPI-10A-01D	DNA	EFO	SRS635739	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFPI-10A-01D A42297 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42297	SRX593571	"Specific Capture analysis of normal sample TARGET-20-PARFPI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARFPI-10A-01D A42297 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42297_1_lane_dupsFlagged.bam	SRR1386055	@dbgap@:reads/SRP012000/SRS635739/SRX593571/SRR1386055/SRR1386055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFPI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFPI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARFPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFPI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFPI-10A-01D	DNA	EFO	SRS635739	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFPI-10A-01D A42297 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42297	SRX593571	"Specific Capture analysis of normal sample TARGET-20-PARFPI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARFPI-10A-01D A42297 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42297_1_lane_dupsFlagged.bam	SRR1386055	@dbgap@:reads/SRP012000/SRS635739/SRX593571/SRR1386055/SRR1386055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFPI-09A-01D_TARGET-20-PARFPI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFPI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFPI-10A-01D	DNA	EFO	SRS635739	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFPI-10A-01D A42297 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42297	SRX593571	"Specific Capture analysis of normal sample TARGET-20-PARFPI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARFPI-10A-01D A42297 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42297_1_lane_dupsFlagged.bam	SRR1386055	@dbgap@:reads/SRP012000/SRS635739/SRX593571/SRR1386055/SRR1386055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFPI-09A-01D_TARGET-20-PARFPI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-03A-01D	DNA	EFO	SRS628694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFRN-03A-01D A32190 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32190	SRX574387	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFRN-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARFRN-03A-01D A32190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32190_1_lane_dupsFlagged.bam	SRR1344907	@dbgap@:reads/SRP012000/SRS628694/SRX574387/SRR1344907/SRR1344907.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFRN-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFRN-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-03A-01D	DNA	EFO	SRS628694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFRN-03A-01D A32190 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32190	SRX574387	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFRN-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARFRN-03A-01D A32190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32190_1_lane_dupsFlagged.bam	SRR1344907	@dbgap@:reads/SRP012000/SRS628694/SRX574387/SRR1344907/SRR1344907.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFRN-03A-01D_TARGET-20-PARFRN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-03A-01D	DNA	EFO	SRS628694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFRN-03A-01D A32190 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32190	SRX574387	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFRN-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARFRN-03A-01D A32190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32190_1_lane_dupsFlagged.bam	SRR1344907	@dbgap@:reads/SRP012000/SRS628694/SRX574387/SRR1344907/SRR1344907.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFRN-03A-01D_TARGET-20-PARFRN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-04A-01D	DNA	EFO	SRS637529	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFRN-04A-01D A42736 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42736	SRX597967	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFRN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARFRN-04A-01D A42736 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42736_1_lane_dupsFlagged.bam	SRR1395241	@dbgap@:reads/SRP012000/SRS637529/SRX597967/SRR1395241/SRR1395241.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFRN-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFRN-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-04A-01D	DNA	EFO	SRS637529	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFRN-04A-01D A42736 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42736	SRX597967	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFRN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARFRN-04A-01D A42736 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42736_1_lane_dupsFlagged.bam	SRR1395241	@dbgap@:reads/SRP012000/SRS637529/SRX597967/SRR1395241/SRR1395241.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFRN-04A-01D_TARGET-20-PARFRN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-04A-01D	DNA	EFO	SRS637529	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFRN-04A-01D A42736 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42736	SRX597967	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFRN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARFRN-04A-01D A42736 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42736_1_lane_dupsFlagged.bam	SRR1395241	@dbgap@:reads/SRP012000/SRS637529/SRX597967/SRR1395241/SRR1395241.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFRN-04A-01D_TARGET-20-PARFRN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFRN-14A-01D A42340 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42340	SRX593554	"Specific Capture analysis of normal sample TARGET-20-PARFRN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARFRN-14A-01D A42340 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42340_1_lane_dupsFlagged.bam	SRR1386062	@dbgap@:reads/SRP012000/SRS301088/SRX593554/SRR1386062/SRR1386062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFRN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFRN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFRN-14A-01D A42340 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42340	SRX593554	"Specific Capture analysis of normal sample TARGET-20-PARFRN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARFRN-14A-01D A42340 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42340_1_lane_dupsFlagged.bam	SRR1386062	@dbgap@:reads/SRP012000/SRS301088/SRX593554/SRR1386062/SRR1386062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFRN-03A-01D_TARGET-20-PARFRN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFRN-14A-01D A42340 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42340	SRX593554	"Specific Capture analysis of normal sample TARGET-20-PARFRN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARFRN-14A-01D A42340 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42340_1_lane_dupsFlagged.bam	SRR1386062	@dbgap@:reads/SRP012000/SRS301088/SRX593554/SRR1386062/SRR1386062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFRN-03A-01D_TARGET-20-PARFRN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFRN-14A-01D A42340 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42340	SRX593554	"Specific Capture analysis of normal sample TARGET-20-PARFRN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARFRN-14A-01D A42340 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42340_1_lane_dupsFlagged.bam	SRR1386062	@dbgap@:reads/SRP012000/SRS301088/SRX593554/SRR1386062/SRR1386062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFRN-04A-01D_TARGET-20-PARFRN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFRN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFRN-14A-01D	DNA	EFO	SRS301088	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFRN-14A-01D A42340 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42340	SRX593554	"Specific Capture analysis of normal sample TARGET-20-PARFRN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARFRN-14A-01D A42340 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42340_1_lane_dupsFlagged.bam	SRR1386062	@dbgap@:reads/SRP012000/SRS301088/SRX593554/SRR1386062/SRR1386062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFRN-04A-01D_TARGET-20-PARFRN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFUZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFUZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFUZ-09A-01D	DNA	EFO	SRS635489	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFUZ-09A-01D A41732 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41732	SRX593212	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFUZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARFUZ-09A-01D A41732 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41732_1_lane_dupsFlagged.bam	SRR1385583	@dbgap@:reads/SRP012000/SRS635489/SRX593212/SRR1385583/SRR1385583.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFUZ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFUZ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARFUZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFUZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFUZ-09A-01D	DNA	EFO	SRS635489	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFUZ-09A-01D A41732 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41732	SRX593212	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFUZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARFUZ-09A-01D A41732 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41732_1_lane_dupsFlagged.bam	SRR1385583	@dbgap@:reads/SRP012000/SRS635489/SRX593212/SRR1385583/SRR1385583.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFUZ-09A-01D_TARGET-20-PARFUZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFUZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFUZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFUZ-09A-01D	DNA	EFO	SRS635489	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFUZ-09A-01D A41732 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41732	SRX593212	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFUZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARFUZ-09A-01D A41732 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41732_1_lane_dupsFlagged.bam	SRR1385583	@dbgap@:reads/SRP012000/SRS635489/SRX593212/SRR1385583/SRR1385583.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFUZ-09A-01D_TARGET-20-PARFUZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFUZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFUZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFUZ-14A-01D	DNA	EFO	SRS637422	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFUZ-14A-01D A42840 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42840	SRX597831	"Specific Capture analysis of normal sample TARGET-20-PARFUZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARFUZ-14A-01D A42840 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42840_1_lane_dupsFlagged.bam	SRR1395057	@dbgap@:reads/SRP012000/SRS637422/SRX597831/SRR1395057/SRR1395057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFUZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFUZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARFUZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFUZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFUZ-14A-01D	DNA	EFO	SRS637422	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFUZ-14A-01D A42840 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42840	SRX597831	"Specific Capture analysis of normal sample TARGET-20-PARFUZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARFUZ-14A-01D A42840 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42840_1_lane_dupsFlagged.bam	SRR1395057	@dbgap@:reads/SRP012000/SRS637422/SRX597831/SRR1395057/SRR1395057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFUZ-09A-01D_TARGET-20-PARFUZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFUZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFUZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFUZ-14A-01D	DNA	EFO	SRS637422	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFUZ-14A-01D A42840 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42840	SRX597831	"Specific Capture analysis of normal sample TARGET-20-PARFUZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARFUZ-14A-01D A42840 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42840_1_lane_dupsFlagged.bam	SRR1395057	@dbgap@:reads/SRP012000/SRS637422/SRX597831/SRR1395057/SRR1395057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFUZ-09A-01D_TARGET-20-PARFUZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFWM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFWM-09A-01D	DNA	EFO	SRS633627	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFWM-09A-01D A33389 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33389	SRX587920	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFWM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARFWM-09A-01D A33389 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33389_1_lane_dupsFlagged.bam	SRR1373795	@dbgap@:reads/SRP012000/SRS633627/SRX587920/SRR1373795/SRR1373795.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFWM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFWM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARFWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFWM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFWM-09A-01D	DNA	EFO	SRS633627	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFWM-09A-01D A33389 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33389	SRX587920	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFWM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARFWM-09A-01D A33389 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33389_1_lane_dupsFlagged.bam	SRR1373795	@dbgap@:reads/SRP012000/SRS633627/SRX587920/SRR1373795/SRR1373795.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFWM-09A-01D_TARGET-20-PARFWM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFWM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFWM-09A-01D	DNA	EFO	SRS633627	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFWM-09A-01D A33389 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33389	SRX587920	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFWM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARFWM-09A-01D A33389 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33389_1_lane_dupsFlagged.bam	SRR1373795	@dbgap@:reads/SRP012000/SRS633627/SRX587920/SRR1373795/SRR1373795.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFWM-09A-01D_TARGET-20-PARFWM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFWM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFWM-14A-01D	DNA	EFO	SRS637490	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFWM-14A-01D A42893 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42893	SRX597920	"Specific Capture analysis of normal sample TARGET-20-PARFWM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARFWM-14A-01D A42893 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42893_1_lane_dupsFlagged.bam	SRR1395142	@dbgap@:reads/SRP012000/SRS637490/SRX597920/SRR1395142/SRR1395142.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFWM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFWM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARFWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFWM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFWM-14A-01D	DNA	EFO	SRS637490	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFWM-14A-01D A42893 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42893	SRX597920	"Specific Capture analysis of normal sample TARGET-20-PARFWM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARFWM-14A-01D A42893 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42893_1_lane_dupsFlagged.bam	SRR1395142	@dbgap@:reads/SRP012000/SRS637490/SRX597920/SRR1395142/SRR1395142.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFWM-09A-01D_TARGET-20-PARFWM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFWM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFWM-14A-01D	DNA	EFO	SRS637490	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFWM-14A-01D A42893 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42893	SRX597920	"Specific Capture analysis of normal sample TARGET-20-PARFWM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARFWM-14A-01D A42893 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42893_1_lane_dupsFlagged.bam	SRR1395142	@dbgap@:reads/SRP012000/SRS637490/SRX597920/SRR1395142/SRR1395142.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFWM-09A-01D_TARGET-20-PARFWM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-09A-01D	DNA	EFO	SRS489886	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFXF-09A-01D A41842 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41842	SRX593356	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFXF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARFXF-09A-01D A41842 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41842_1_lane_dupsFlagged.bam	SRR1385848	@dbgap@:reads/SRP012000/SRS489886/SRX593356/SRR1385848/SRR1385848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFXF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFXF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-09A-01D	DNA	EFO	SRS489886	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFXF-09A-01D A41842 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41842	SRX593356	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFXF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARFXF-09A-01D A41842 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41842_1_lane_dupsFlagged.bam	SRR1385848	@dbgap@:reads/SRP012000/SRS489886/SRX593356/SRR1385848/SRR1385848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFXF-09A-01D_TARGET-20-PARFXF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-09A-01D	DNA	EFO	SRS489886	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFXF-09A-01D A41842 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41842	SRX593356	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFXF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARFXF-09A-01D A41842 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41842_1_lane_dupsFlagged.bam	SRR1385848	@dbgap@:reads/SRP012000/SRS489886/SRX593356/SRR1385848/SRR1385848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFXF-09A-01D_TARGET-20-PARFXF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-14A-01D	DNA	EFO	SRS489885	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFXF-14A-01D A42785 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42785	SRX597790	"Specific Capture analysis of normal sample TARGET-20-PARFXF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARFXF-14A-01D A42785 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42785_1_lane_dupsFlagged.bam	SRR1395121	@dbgap@:reads/SRP012000/SRS489885/SRX597790/SRR1395121/SRR1395121.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFXF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFXF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-14A-01D	DNA	EFO	SRS489885	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFXF-14A-01D A42785 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42785	SRX597790	"Specific Capture analysis of normal sample TARGET-20-PARFXF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARFXF-14A-01D A42785 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42785_1_lane_dupsFlagged.bam	SRR1395121	@dbgap@:reads/SRP012000/SRS489885/SRX597790/SRR1395121/SRR1395121.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFXF-09A-01D_TARGET-20-PARFXF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFXF-14A-01D	DNA	EFO	SRS489885	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFXF-14A-01D A42785 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42785	SRX597790	"Specific Capture analysis of normal sample TARGET-20-PARFXF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARFXF-14A-01D A42785 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42785_1_lane_dupsFlagged.bam	SRR1395121	@dbgap@:reads/SRP012000/SRS489885/SRX597790/SRR1395121/SRR1395121.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARFXF-09A-01D_TARGET-20-PARFXF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARFZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARFZP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFZP-09A-01D	DNA	EFO	SRS635469	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFZP-09A-01D A41748 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41748	SRX593191	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARFZP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARFZP-09A-01D A41748 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41748_1_lane_dupsFlagged.bam	SRR1385643	@dbgap@:reads/SRP012000/SRS635469/SRX593191/SRR1385643/SRR1385643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARFZP-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARFZP-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-03A-01D	DNA	EFO	SRS489873	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGDB-03A-01D A32191 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32191	SRX574461	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGDB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARGDB-03A-01D A32191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32191_1_lane_dupsFlagged.bam	SRR1344903	@dbgap@:reads/SRP012000/SRS489873/SRX574461/SRR1344903/SRR1344903.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARGDB-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARGDB-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-03A-01D	DNA	EFO	SRS489873	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGDB-03A-01D A32191 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32191	SRX574461	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGDB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARGDB-03A-01D A32191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32191_1_lane_dupsFlagged.bam	SRR1344903	@dbgap@:reads/SRP012000/SRS489873/SRX574461/SRR1344903/SRR1344903.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGDB-03A-01D_TARGET-20-PARGDB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-03A-01D	DNA	EFO	SRS489873	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGDB-03A-01D A32191 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32191	SRX574461	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGDB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARGDB-03A-01D A32191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32191_1_lane_dupsFlagged.bam	SRR1344903	@dbgap@:reads/SRP012000/SRS489873/SRX574461/SRR1344903/SRR1344903.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGDB-03A-01D_TARGET-20-PARGDB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-04A-03D	DNA	EFO	SRS489872	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGDB-04A-03D A42275 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42275	SRX597753	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGDB-04A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARGDB-04A-03D A42275 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42275_1_lane_dupsFlagged.bam	SRR1395014	@dbgap@:reads/SRP012000/SRS489872/SRX597753/SRR1395014/SRR1395014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARGDB-04A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARGDB-04A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-04A-03D	DNA	EFO	SRS489872	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGDB-04A-03D A42275 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42275	SRX597753	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGDB-04A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARGDB-04A-03D A42275 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42275_1_lane_dupsFlagged.bam	SRR1395014	@dbgap@:reads/SRP012000/SRS489872/SRX597753/SRR1395014/SRR1395014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGDB-04A-03D_TARGET-20-PARGDB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-04A-03D	DNA	EFO	SRS489872	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGDB-04A-03D A42275 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42275	SRX597753	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGDB-04A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARGDB-04A-03D A42275 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42275_1_lane_dupsFlagged.bam	SRR1395014	@dbgap@:reads/SRP012000/SRS489872/SRX597753/SRR1395014/SRR1395014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGDB-04A-03D_TARGET-20-PARGDB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-14A-01D	DNA	EFO	SRS637486	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGDB-14A-01D A42922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42922	SRX597916	"Specific Capture analysis of normal sample TARGET-20-PARGDB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGDB-14A-01D A42922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42922_1_lane_dupsFlagged.bam	SRR1395182	@dbgap@:reads/SRP012000/SRS637486/SRX597916/SRR1395182/SRR1395182.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARGDB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARGDB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-14A-01D	DNA	EFO	SRS637486	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGDB-14A-01D A42922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42922	SRX597916	"Specific Capture analysis of normal sample TARGET-20-PARGDB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGDB-14A-01D A42922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42922_1_lane_dupsFlagged.bam	SRR1395182	@dbgap@:reads/SRP012000/SRS637486/SRX597916/SRR1395182/SRR1395182.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGDB-03A-01D_TARGET-20-PARGDB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-14A-01D	DNA	EFO	SRS637486	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGDB-14A-01D A42922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42922	SRX597916	"Specific Capture analysis of normal sample TARGET-20-PARGDB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGDB-14A-01D A42922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42922_1_lane_dupsFlagged.bam	SRR1395182	@dbgap@:reads/SRP012000/SRS637486/SRX597916/SRR1395182/SRR1395182.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGDB-03A-01D_TARGET-20-PARGDB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-14A-01D	DNA	EFO	SRS637486	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGDB-14A-01D A42922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42922	SRX597916	"Specific Capture analysis of normal sample TARGET-20-PARGDB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGDB-14A-01D A42922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42922_1_lane_dupsFlagged.bam	SRR1395182	@dbgap@:reads/SRP012000/SRS637486/SRX597916/SRR1395182/SRR1395182.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGDB-04A-03D_TARGET-20-PARGDB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGDB-14A-01D	DNA	EFO	SRS637486	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGDB-14A-01D A42922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42922	SRX597916	"Specific Capture analysis of normal sample TARGET-20-PARGDB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGDB-14A-01D A42922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42922_1_lane_dupsFlagged.bam	SRR1395182	@dbgap@:reads/SRP012000/SRS637486/SRX597916/SRR1395182/SRR1395182.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGDB-04A-03D_TARGET-20-PARGDB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARGMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARGMH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGMH-03A-01D	DNA	EFO	SRS633689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGMH-03A-01D A33366 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33366	SRX587981	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGMH-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARGMH-03A-01D A33366 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33366_1_lane_dupsFlagged.bam	SRR1373809	@dbgap@:reads/SRP012000/SRS633689/SRX587981/SRR1373809/SRR1373809.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARGMH-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARGMH-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARGMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARGMH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGMH-03A-01D	DNA	EFO	SRS633689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGMH-03A-01D A33366 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33366	SRX587981	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGMH-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARGMH-03A-01D A33366 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33366_1_lane_dupsFlagged.bam	SRR1373809	@dbgap@:reads/SRP012000/SRS633689/SRX587981/SRR1373809/SRR1373809.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGMH-03A-01D_TARGET-20-PARGMH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARGMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARGMH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGMH-03A-01D	DNA	EFO	SRS633689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGMH-03A-01D A33366 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33366	SRX587981	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGMH-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARGMH-03A-01D A33366 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33366_1_lane_dupsFlagged.bam	SRR1373809	@dbgap@:reads/SRP012000/SRS633689/SRX587981/SRR1373809/SRR1373809.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGMH-03A-01D_TARGET-20-PARGMH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARGMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARGMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGMH-14A-01D	DNA	EFO	SRS636002	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGMH-14A-01D A42572 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42572	SRX593970	"Specific Capture analysis of normal sample TARGET-20-PARGMH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARGMH-14A-01D A42572 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42572_1_lane_dupsFlagged.bam	SRR1386433	@dbgap@:reads/SRP012000/SRS636002/SRX593970/SRR1386433/SRR1386433.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARGMH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARGMH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARGMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARGMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGMH-14A-01D	DNA	EFO	SRS636002	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGMH-14A-01D A42572 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42572	SRX593970	"Specific Capture analysis of normal sample TARGET-20-PARGMH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARGMH-14A-01D A42572 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42572_1_lane_dupsFlagged.bam	SRR1386433	@dbgap@:reads/SRP012000/SRS636002/SRX593970/SRR1386433/SRR1386433.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGMH-03A-01D_TARGET-20-PARGMH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARGMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARGMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGMH-14A-01D	DNA	EFO	SRS636002	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGMH-14A-01D A42572 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42572	SRX593970	"Specific Capture analysis of normal sample TARGET-20-PARGMH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARGMH-14A-01D A42572 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42572_1_lane_dupsFlagged.bam	SRR1386433	@dbgap@:reads/SRP012000/SRS636002/SRX593970/SRR1386433/SRR1386433.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGMH-03A-01D_TARGET-20-PARGMH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARGSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARGSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGSY-09A-01D	DNA	EFO	SRS635569	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGSY-09A-01D A41925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41925	SRX593387	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGSY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARGSY-09A-01D A41925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41925_1_lane_dupsFlagged.bam	SRR1385864	@dbgap@:reads/SRP012000/SRS635569/SRX593387/SRR1385864/SRR1385864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARGSY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARGSY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARGSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARGSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGSY-09A-01D	DNA	EFO	SRS635569	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGSY-09A-01D A41925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41925	SRX593387	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGSY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARGSY-09A-01D A41925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41925_1_lane_dupsFlagged.bam	SRR1385864	@dbgap@:reads/SRP012000/SRS635569/SRX593387/SRR1385864/SRR1385864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGSY-09A-01D_TARGET-20-PARGSY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARGSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARGSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGSY-09A-01D	DNA	EFO	SRS635569	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGSY-09A-01D A41925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41925	SRX593387	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGSY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARGSY-09A-01D A41925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41925_1_lane_dupsFlagged.bam	SRR1385864	@dbgap@:reads/SRP012000/SRS635569/SRX593387/SRR1385864/SRR1385864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGSY-09A-01D_TARGET-20-PARGSY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARGSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARGSY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGSY-14A-01D	DNA	EFO	SRS637437	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGSY-14A-01D A42786 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42786	SRX597849	"Specific Capture analysis of normal sample TARGET-20-PARGSY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARGSY-14A-01D A42786 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42786_1_lane_dupsFlagged.bam	SRR1395131	@dbgap@:reads/SRP012000/SRS637437/SRX597849/SRR1395131/SRR1395131.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARGSY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARGSY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARGSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARGSY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGSY-14A-01D	DNA	EFO	SRS637437	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGSY-14A-01D A42786 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42786	SRX597849	"Specific Capture analysis of normal sample TARGET-20-PARGSY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARGSY-14A-01D A42786 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42786_1_lane_dupsFlagged.bam	SRR1395131	@dbgap@:reads/SRP012000/SRS637437/SRX597849/SRR1395131/SRR1395131.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGSY-09A-01D_TARGET-20-PARGSY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARGSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARGSY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGSY-14A-01D	DNA	EFO	SRS637437	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGSY-14A-01D A42786 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42786	SRX597849	"Specific Capture analysis of normal sample TARGET-20-PARGSY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARGSY-14A-01D A42786 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42786_1_lane_dupsFlagged.bam	SRR1395131	@dbgap@:reads/SRP012000/SRS637437/SRX597849/SRR1395131/SRR1395131.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGSY-09A-01D_TARGET-20-PARGSY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARGTF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGTF-03A-01D	DNA	EFO	SRS635580	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGTF-03A-01D A41926 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41926	SRX593399	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGTF-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARGTF-03A-01D A41926 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41926_1_lane_dupsFlagged.bam	SRR1385872	@dbgap@:reads/SRP012000/SRS635580/SRX593399/SRR1385872/SRR1385872.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARGTF-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARGTF-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARGTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGTL-09A-02D	DNA	EFO	SRS628706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGTL-09A-02D A32192 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32192	SRX574399	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGTL-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARGTL-09A-02D A32192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32192_1_lane_dupsFlagged.bam	SRR1344883	@dbgap@:reads/SRP012000/SRS628706/SRX574399/SRR1344883/SRR1344883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARGTL-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARGTL-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARGTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGTL-09A-02D	DNA	EFO	SRS628706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGTL-09A-02D A32192 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32192	SRX574399	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGTL-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARGTL-09A-02D A32192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32192_1_lane_dupsFlagged.bam	SRR1344883	@dbgap@:reads/SRP012000/SRS628706/SRX574399/SRR1344883/SRR1344883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGTL-09A-02D_TARGET-20-PARGTL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARGTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGTL-09A-02D	DNA	EFO	SRS628706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGTL-09A-02D A32192 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32192	SRX574399	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGTL-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARGTL-09A-02D A32192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32192_1_lane_dupsFlagged.bam	SRR1344883	@dbgap@:reads/SRP012000/SRS628706/SRX574399/SRR1344883/SRR1344883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGTL-09A-02D_TARGET-20-PARGTL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARGTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGTL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGTL-14A-01D	DNA	EFO	SRS637468	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGTL-14A-01D A42899 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42899	SRX597886	"Specific Capture analysis of normal sample TARGET-20-PARGTL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGTL-14A-01D A42899 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42899_1_lane_dupsFlagged.bam	SRR1395227	@dbgap@:reads/SRP012000/SRS637468/SRX597886/SRR1395227/SRR1395227.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARGTL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARGTL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARGTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGTL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGTL-14A-01D	DNA	EFO	SRS637468	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGTL-14A-01D A42899 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42899	SRX597886	"Specific Capture analysis of normal sample TARGET-20-PARGTL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGTL-14A-01D A42899 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42899_1_lane_dupsFlagged.bam	SRR1395227	@dbgap@:reads/SRP012000/SRS637468/SRX597886/SRR1395227/SRR1395227.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGTL-09A-02D_TARGET-20-PARGTL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARGTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGTL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGTL-14A-01D	DNA	EFO	SRS637468	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGTL-14A-01D A42899 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42899	SRX597886	"Specific Capture analysis of normal sample TARGET-20-PARGTL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGTL-14A-01D A42899 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42899_1_lane_dupsFlagged.bam	SRR1395227	@dbgap@:reads/SRP012000/SRS637468/SRX597886/SRR1395227/SRR1395227.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGTL-09A-02D_TARGET-20-PARGTL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARGTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGTR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGTR-03A-02D	DNA	EFO	SRS628303	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGTR-03A-02D A31207 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31207	SRX573366	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGTR-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARGTR-03A-02D A31207 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31207_1_lane_dupsFlagged.bam	SRR1342631	@dbgap@:reads/SRP012000/SRS628303/SRX573366/SRR1342631/SRR1342631.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARGTR-03A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARGTR-03A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARGTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGTR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGTR-03A-02D	DNA	EFO	SRS628303	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGTR-03A-02D A31207 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31207	SRX573366	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGTR-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARGTR-03A-02D A31207 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31207_1_lane_dupsFlagged.bam	SRR1342631	@dbgap@:reads/SRP012000/SRS628303/SRX573366/SRR1342631/SRR1342631.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGTR-03A-02D_TARGET-20-PARGTR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARGTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGTR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGTR-03A-02D	DNA	EFO	SRS628303	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGTR-03A-02D A31207 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31207	SRX573366	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGTR-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARGTR-03A-02D A31207 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31207_1_lane_dupsFlagged.bam	SRR1342631	@dbgap@:reads/SRP012000/SRS628303/SRX573366/SRR1342631/SRR1342631.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGTR-03A-02D_TARGET-20-PARGTR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARGTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGTR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGTR-14A-01D	DNA	EFO	SRS635902	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGTR-14A-01D A42515 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42515	SRX593862	"Specific Capture analysis of normal sample TARGET-20-PARGTR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGTR-14A-01D A42515 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42515_1_lane_dupsFlagged.bam	SRR1386368	@dbgap@:reads/SRP012000/SRS635902/SRX593862/SRR1386368/SRR1386368.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARGTR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARGTR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARGTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGTR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGTR-14A-01D	DNA	EFO	SRS635902	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGTR-14A-01D A42515 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42515	SRX593862	"Specific Capture analysis of normal sample TARGET-20-PARGTR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGTR-14A-01D A42515 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42515_1_lane_dupsFlagged.bam	SRR1386368	@dbgap@:reads/SRP012000/SRS635902/SRX593862/SRR1386368/SRR1386368.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGTR-03A-02D_TARGET-20-PARGTR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARGTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGTR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGTR-14A-01D	DNA	EFO	SRS635902	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGTR-14A-01D A42515 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42515	SRX593862	"Specific Capture analysis of normal sample TARGET-20-PARGTR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGTR-14A-01D A42515 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42515_1_lane_dupsFlagged.bam	SRR1386368	@dbgap@:reads/SRP012000/SRS635902/SRX593862/SRR1386368/SRR1386368.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGTR-03A-02D_TARGET-20-PARGTR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-01D	DNA	EFO	SRS160293	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGVC-03A-01D A31241 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31241	SRX573367	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGVC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARGVC-03A-01D A31241 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31241_1_lane_dupsFlagged.bam	SRR1342612	@dbgap@:reads/SRP012000/SRS160293/SRX573367/SRR1342612/SRR1342612.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARGVC-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARGVC-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-01D	DNA	EFO	SRS160293	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGVC-03A-01D A31241 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31241	SRX573367	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGVC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARGVC-03A-01D A31241 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31241_1_lane_dupsFlagged.bam	SRR1342612	@dbgap@:reads/SRP012000/SRS160293/SRX573367/SRR1342612/SRR1342612.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGVC-03A-01D_TARGET-20-PARGVC-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-01D	DNA	EFO	SRS160293	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGVC-03A-01D A31241 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31241	SRX573367	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGVC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARGVC-03A-01D A31241 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31241_1_lane_dupsFlagged.bam	SRR1342612	@dbgap@:reads/SRP012000/SRS160293/SRX573367/SRR1342612/SRR1342612.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGVC-03A-01D_TARGET-20-PARGVC-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-03D	DNA	EFO	SRS635907	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGVC-14A-03D A42553 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42553	SRX593868	"Specific Capture analysis of normal sample TARGET-20-PARGVC-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGVC-14A-03D A42553 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42553_1_lane_dupsFlagged.bam	SRR1386369	@dbgap@:reads/SRP012000/SRS635907/SRX593868/SRR1386369/SRR1386369.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARGVC-14A-03D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARGVC-14A-03D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-03D	DNA	EFO	SRS635907	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGVC-14A-03D A42553 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42553	SRX593868	"Specific Capture analysis of normal sample TARGET-20-PARGVC-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGVC-14A-03D A42553 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42553_1_lane_dupsFlagged.bam	SRR1386369	@dbgap@:reads/SRP012000/SRS635907/SRX593868/SRR1386369/SRR1386369.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGVC-03A-01D_TARGET-20-PARGVC-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-03D	DNA	EFO	SRS635907	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGVC-14A-03D A42553 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42553	SRX593868	"Specific Capture analysis of normal sample TARGET-20-PARGVC-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGVC-14A-03D A42553 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42553_1_lane_dupsFlagged.bam	SRR1386369	@dbgap@:reads/SRP012000/SRS635907/SRX593868/SRR1386369/SRR1386369.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGVC-03A-01D_TARGET-20-PARGVC-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARGXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGXP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGXP-03A-01D	DNA	EFO	SRS635538	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGXP-03A-01D A41835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41835	SRX593319	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGXP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARGXP-03A-01D A41835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41835_1_lane_dupsFlagged.bam	SRR1385851	@dbgap@:reads/SRP012000/SRS635538/SRX593319/SRR1385851/SRR1385851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARGXP-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARGXP-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARGXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGXP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGXP-03A-01D	DNA	EFO	SRS635538	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGXP-03A-01D A41835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41835	SRX593319	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGXP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARGXP-03A-01D A41835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41835_1_lane_dupsFlagged.bam	SRR1385851	@dbgap@:reads/SRP012000/SRS635538/SRX593319/SRR1385851/SRR1385851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGXP-03A-01D_TARGET-20-PARGXP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARGXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGXP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGXP-03A-01D	DNA	EFO	SRS635538	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGXP-03A-01D A41835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41835	SRX593319	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGXP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARGXP-03A-01D A41835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41835_1_lane_dupsFlagged.bam	SRR1385851	@dbgap@:reads/SRP012000/SRS635538/SRX593319/SRR1385851/SRR1385851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGXP-03A-01D_TARGET-20-PARGXP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARGXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGXP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGXP-14A-01D	DNA	EFO	SRS635871	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGXP-14A-01D A42545 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42545	SRX593831	"Specific Capture analysis of normal sample TARGET-20-PARGXP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGXP-14A-01D A42545 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42545_1_lane_dupsFlagged.bam	SRR1386370	@dbgap@:reads/SRP012000/SRS635871/SRX593831/SRR1386370/SRR1386370.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARGXP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARGXP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARGXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGXP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGXP-14A-01D	DNA	EFO	SRS635871	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGXP-14A-01D A42545 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42545	SRX593831	"Specific Capture analysis of normal sample TARGET-20-PARGXP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGXP-14A-01D A42545 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42545_1_lane_dupsFlagged.bam	SRR1386370	@dbgap@:reads/SRP012000/SRS635871/SRX593831/SRR1386370/SRR1386370.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGXP-03A-01D_TARGET-20-PARGXP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARGXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGXP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGXP-14A-01D	DNA	EFO	SRS635871	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGXP-14A-01D A42545 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42545	SRX593831	"Specific Capture analysis of normal sample TARGET-20-PARGXP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGXP-14A-01D A42545 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42545_1_lane_dupsFlagged.bam	SRR1386370	@dbgap@:reads/SRP012000/SRS635871/SRX593831/SRR1386370/SRR1386370.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGXP-03A-01D_TARGET-20-PARGXP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARGYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARGYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGYS-09A-01D	DNA	EFO	SRS633631	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGYS-09A-01D A33367 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33367	SRX587926	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGYS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARGYS-09A-01D A33367 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33367_1_lane_dupsFlagged.bam	SRR1373779	@dbgap@:reads/SRP012000/SRS633631/SRX587926/SRR1373779/SRR1373779.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARGYS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARGYS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARGYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARGYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGYS-09A-01D	DNA	EFO	SRS633631	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGYS-09A-01D A33367 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33367	SRX587926	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGYS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARGYS-09A-01D A33367 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33367_1_lane_dupsFlagged.bam	SRR1373779	@dbgap@:reads/SRP012000/SRS633631/SRX587926/SRR1373779/SRR1373779.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGYS-09A-01D_TARGET-20-PARGYS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARGYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARGYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGYS-09A-01D	DNA	EFO	SRS633631	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGYS-09A-01D A33367 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33367	SRX587926	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARGYS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARGYS-09A-01D A33367 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33367_1_lane_dupsFlagged.bam	SRR1373779	@dbgap@:reads/SRP012000/SRS633631/SRX587926/SRR1373779/SRR1373779.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGYS-09A-01D_TARGET-20-PARGYS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARGYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARGYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGYS-14A-01D	DNA	EFO	SRS635893	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGYS-14A-01D A42533 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42533	SRX593853	"Specific Capture analysis of normal sample TARGET-20-PARGYS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGYS-14A-01D A42533 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42533_1_lane_dupsFlagged.bam	SRR1386408	@dbgap@:reads/SRP012000/SRS635893/SRX593853/SRR1386408/SRR1386408.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARGYS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARGYS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARGYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARGYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGYS-14A-01D	DNA	EFO	SRS635893	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGYS-14A-01D A42533 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42533	SRX593853	"Specific Capture analysis of normal sample TARGET-20-PARGYS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGYS-14A-01D A42533 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42533_1_lane_dupsFlagged.bam	SRR1386408	@dbgap@:reads/SRP012000/SRS635893/SRX593853/SRR1386408/SRR1386408.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGYS-09A-01D_TARGET-20-PARGYS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARGYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARGYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGYS-14A-01D	DNA	EFO	SRS635893	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGYS-14A-01D A42533 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42533	SRX593853	"Specific Capture analysis of normal sample TARGET-20-PARGYS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARGYS-14A-01D A42533 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42533_1_lane_dupsFlagged.bam	SRR1386408	@dbgap@:reads/SRP012000/SRS635893/SRX593853/SRR1386408/SRR1386408.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARGYS-09A-01D_TARGET-20-PARGYS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHBA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHBA-03A-01D	DNA	EFO	SRS628701	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHBA-03A-01D A32193 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32193	SRX574394	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHBA-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARHBA-03A-01D A32193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32193_1_lane_dupsFlagged.bam	SRR1344893	@dbgap@:reads/SRP012000/SRS628701/SRX574394/SRR1344893/SRR1344893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHBA-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHBA-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARHBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHBA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHBA-03A-01D	DNA	EFO	SRS628701	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHBA-03A-01D A32193 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32193	SRX574394	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHBA-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARHBA-03A-01D A32193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32193_1_lane_dupsFlagged.bam	SRR1344893	@dbgap@:reads/SRP012000/SRS628701/SRX574394/SRR1344893/SRR1344893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHBA-03A-01D_TARGET-20-PARHBA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHBA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHBA-03A-01D	DNA	EFO	SRS628701	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHBA-03A-01D A32193 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32193	SRX574394	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHBA-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARHBA-03A-01D A32193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32193_1_lane_dupsFlagged.bam	SRR1344893	@dbgap@:reads/SRP012000/SRS628701/SRX574394/SRR1344893/SRR1344893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHBA-03A-01D_TARGET-20-PARHBA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHBA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHBA-14A-01D	DNA	EFO	SRS635992	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHBA-14A-01D A42611 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42611	SRX593958	"Specific Capture analysis of normal sample TARGET-20-PARHBA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARHBA-14A-01D A42611 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42611_1_lane_dupsFlagged.bam	SRR1386441	@dbgap@:reads/SRP012000/SRS635992/SRX593958/SRR1386441/SRR1386441.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHBA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHBA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARHBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHBA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHBA-14A-01D	DNA	EFO	SRS635992	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHBA-14A-01D A42611 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42611	SRX593958	"Specific Capture analysis of normal sample TARGET-20-PARHBA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARHBA-14A-01D A42611 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42611_1_lane_dupsFlagged.bam	SRR1386441	@dbgap@:reads/SRP012000/SRS635992/SRX593958/SRR1386441/SRR1386441.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHBA-03A-01D_TARGET-20-PARHBA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHBA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHBA-14A-01D	DNA	EFO	SRS635992	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHBA-14A-01D A42611 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42611	SRX593958	"Specific Capture analysis of normal sample TARGET-20-PARHBA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARHBA-14A-01D A42611 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42611_1_lane_dupsFlagged.bam	SRR1386441	@dbgap@:reads/SRP012000/SRS635992/SRX593958/SRR1386441/SRR1386441.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHBA-03A-01D_TARGET-20-PARHBA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHJA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHJA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHJA-09A-01D	DNA	EFO	SRS635430	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHJA-09A-01D A41749 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41749	SRX593152	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHJA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARHJA-09A-01D A41749 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41749_1_lane_dupsFlagged.bam	SRR1385627	@dbgap@:reads/SRP012000/SRS635430/SRX593152/SRR1385627/SRR1385627.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHJA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHJA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARHJA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHJA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHJA-09A-01D	DNA	EFO	SRS635430	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHJA-09A-01D A41749 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41749	SRX593152	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHJA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARHJA-09A-01D A41749 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41749_1_lane_dupsFlagged.bam	SRR1385627	@dbgap@:reads/SRP012000/SRS635430/SRX593152/SRR1385627/SRR1385627.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHJA-09A-01D_TARGET-20-PARHJA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHJA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHJA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHJA-09A-01D	DNA	EFO	SRS635430	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHJA-09A-01D A41749 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41749	SRX593152	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHJA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARHJA-09A-01D A41749 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41749_1_lane_dupsFlagged.bam	SRR1385627	@dbgap@:reads/SRP012000/SRS635430/SRX593152/SRR1385627/SRR1385627.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHJA-09A-01D_TARGET-20-PARHJA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHJA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHJA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHJA-14A-01D	DNA	EFO	SRS635753	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHJA-14A-01D A42313 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42313	SRX593587	"Specific Capture analysis of normal sample TARGET-20-PARHJA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARHJA-14A-01D A42313 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42313_1_lane_dupsFlagged.bam	SRR1386043	@dbgap@:reads/SRP012000/SRS635753/SRX593587/SRR1386043/SRR1386043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHJA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHJA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARHJA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHJA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHJA-14A-01D	DNA	EFO	SRS635753	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHJA-14A-01D A42313 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42313	SRX593587	"Specific Capture analysis of normal sample TARGET-20-PARHJA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARHJA-14A-01D A42313 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42313_1_lane_dupsFlagged.bam	SRR1386043	@dbgap@:reads/SRP012000/SRS635753/SRX593587/SRR1386043/SRR1386043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHJA-09A-01D_TARGET-20-PARHJA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHJA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHJA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHJA-14A-01D	DNA	EFO	SRS635753	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHJA-14A-01D A42313 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42313	SRX593587	"Specific Capture analysis of normal sample TARGET-20-PARHJA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARHJA-14A-01D A42313 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42313_1_lane_dupsFlagged.bam	SRR1386043	@dbgap@:reads/SRP012000/SRS635753/SRX593587/SRR1386043/SRR1386043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHJA-09A-01D_TARGET-20-PARHJA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHJL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHJL-03A-01D	DNA	EFO	SRS633666	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHJL-03A-01D A33390 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33390	SRX587961	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHJL-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARHJL-03A-01D A33390 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33390_1_lane_dupsFlagged.bam	SRR1373799	@dbgap@:reads/SRP012000/SRS633666/SRX587961/SRR1373799/SRR1373799.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHJL-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHJL-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARHJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHJV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHJV-09A-02D	DNA	EFO	SRS628913	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHJV-09A-02D A32321 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32321	SRX574969	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHJV-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARHJV-09A-02D A32321 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32321_1_lane_dupsFlagged.bam	SRR1346187	@dbgap@:reads/SRP012000/SRS628913/SRX574969/SRR1346187/SRR1346187.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHJV-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHJV-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARHJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHJV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHJV-09A-02D	DNA	EFO	SRS628913	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHJV-09A-02D A32321 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32321	SRX574969	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHJV-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARHJV-09A-02D A32321 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32321_1_lane_dupsFlagged.bam	SRR1346187	@dbgap@:reads/SRP012000/SRS628913/SRX574969/SRR1346187/SRR1346187.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHJV-09A-02D_TARGET-20-PARHJV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHJV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHJV-09A-02D	DNA	EFO	SRS628913	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHJV-09A-02D A32321 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32321	SRX574969	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHJV-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARHJV-09A-02D A32321 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32321_1_lane_dupsFlagged.bam	SRR1346187	@dbgap@:reads/SRP012000/SRS628913/SRX574969/SRR1346187/SRR1346187.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHJV-09A-02D_TARGET-20-PARHJV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHJV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHJV-14A-01D	DNA	EFO	SRS637442	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHJV-14A-01D A42902 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42902	SRX597856	"Specific Capture analysis of normal sample TARGET-20-PARHJV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHJV-14A-01D A42902 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42902_1_lane_dupsFlagged.bam	SRR1395185	@dbgap@:reads/SRP012000/SRS637442/SRX597856/SRR1395185/SRR1395185.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHJV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHJV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARHJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHJV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHJV-14A-01D	DNA	EFO	SRS637442	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHJV-14A-01D A42902 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42902	SRX597856	"Specific Capture analysis of normal sample TARGET-20-PARHJV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHJV-14A-01D A42902 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42902_1_lane_dupsFlagged.bam	SRR1395185	@dbgap@:reads/SRP012000/SRS637442/SRX597856/SRR1395185/SRR1395185.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHJV-09A-02D_TARGET-20-PARHJV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHJV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHJV-14A-01D	DNA	EFO	SRS637442	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHJV-14A-01D A42902 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42902	SRX597856	"Specific Capture analysis of normal sample TARGET-20-PARHJV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHJV-14A-01D A42902 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42902_1_lane_dupsFlagged.bam	SRR1395185	@dbgap@:reads/SRP012000/SRS637442/SRX597856/SRR1395185/SRR1395185.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHJV-09A-02D_TARGET-20-PARHJV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHKJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHKJ-03A-01D	DNA	EFO	SRS635462	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHKJ-03A-01D A41750 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41750	SRX593184	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHKJ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARHKJ-03A-01D A41750 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41750_1_lane_dupsFlagged.bam	SRR1385663	@dbgap@:reads/SRP012000/SRS635462/SRX593184/SRR1385663/SRR1385663.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHKJ-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHKJ-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARHKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHKJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHKJ-03A-01D	DNA	EFO	SRS635462	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHKJ-03A-01D A41750 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41750	SRX593184	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHKJ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARHKJ-03A-01D A41750 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41750_1_lane_dupsFlagged.bam	SRR1385663	@dbgap@:reads/SRP012000/SRS635462/SRX593184/SRR1385663/SRR1385663.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHKJ-03A-01D_TARGET-20-PARHKJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHKJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHKJ-03A-01D	DNA	EFO	SRS635462	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHKJ-03A-01D A41750 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41750	SRX593184	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHKJ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARHKJ-03A-01D A41750 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41750_1_lane_dupsFlagged.bam	SRR1385663	@dbgap@:reads/SRP012000/SRS635462/SRX593184/SRR1385663/SRR1385663.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHKJ-03A-01D_TARGET-20-PARHKJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHKJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHKJ-14A-01D	DNA	EFO	SRS637455	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHKJ-14A-01D A42904 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42904	SRX597873	"Specific Capture analysis of normal sample TARGET-20-PARHKJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHKJ-14A-01D A42904 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42904_1_lane_dupsFlagged.bam	SRR1395224	@dbgap@:reads/SRP012000/SRS637455/SRX597873/SRR1395224/SRR1395224.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHKJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHKJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARHKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHKJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHKJ-14A-01D	DNA	EFO	SRS637455	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHKJ-14A-01D A42904 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42904	SRX597873	"Specific Capture analysis of normal sample TARGET-20-PARHKJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHKJ-14A-01D A42904 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42904_1_lane_dupsFlagged.bam	SRR1395224	@dbgap@:reads/SRP012000/SRS637455/SRX597873/SRR1395224/SRR1395224.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHKJ-03A-01D_TARGET-20-PARHKJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHKJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHKJ-14A-01D	DNA	EFO	SRS637455	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHKJ-14A-01D A42904 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42904	SRX597873	"Specific Capture analysis of normal sample TARGET-20-PARHKJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHKJ-14A-01D A42904 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42904_1_lane_dupsFlagged.bam	SRR1395224	@dbgap@:reads/SRP012000/SRS637455/SRX597873/SRR1395224/SRR1395224.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHKJ-03A-01D_TARGET-20-PARHKJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHKX-09A-01D	DNA	EFO	SRS633638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHKX-09A-01D A33391 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33391	SRX587932	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHKX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARHKX-09A-01D A33391 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33391_1_lane_dupsFlagged.bam	SRR1373819	@dbgap@:reads/SRP012000/SRS633638/SRX587932/SRR1373819/SRR1373819.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHKX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHKX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARHKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHKX-09A-01D	DNA	EFO	SRS633638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHKX-09A-01D A33391 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33391	SRX587932	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHKX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARHKX-09A-01D A33391 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33391_1_lane_dupsFlagged.bam	SRR1373819	@dbgap@:reads/SRP012000/SRS633638/SRX587932/SRR1373819/SRR1373819.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHKX-09A-01D_TARGET-20-PARHKX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHKX-09A-01D	DNA	EFO	SRS633638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHKX-09A-01D A33391 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33391	SRX587932	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHKX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARHKX-09A-01D A33391 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33391_1_lane_dupsFlagged.bam	SRR1373819	@dbgap@:reads/SRP012000/SRS633638/SRX587932/SRR1373819/SRR1373819.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHKX-09A-01D_TARGET-20-PARHKX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHKX-14A-01D	DNA	EFO	SRS637457	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHKX-14A-01D A42898 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42898	SRX597874	"Specific Capture analysis of normal sample TARGET-20-PARHKX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHKX-14A-01D A42898 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42898_1_lane_dupsFlagged.bam	SRR1395220	@dbgap@:reads/SRP012000/SRS637457/SRX597874/SRR1395220/SRR1395220.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHKX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHKX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARHKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHKX-14A-01D	DNA	EFO	SRS637457	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHKX-14A-01D A42898 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42898	SRX597874	"Specific Capture analysis of normal sample TARGET-20-PARHKX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHKX-14A-01D A42898 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42898_1_lane_dupsFlagged.bam	SRR1395220	@dbgap@:reads/SRP012000/SRS637457/SRX597874/SRR1395220/SRR1395220.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHKX-09A-01D_TARGET-20-PARHKX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHKX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHKX-14A-01D	DNA	EFO	SRS637457	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHKX-14A-01D A42898 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42898	SRX597874	"Specific Capture analysis of normal sample TARGET-20-PARHKX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHKX-14A-01D A42898 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42898_1_lane_dupsFlagged.bam	SRR1395220	@dbgap@:reads/SRP012000/SRS637457/SRX597874/SRR1395220/SRR1395220.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHKX-09A-01D_TARGET-20-PARHKX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHKY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHKY-09A-01D	DNA	EFO	SRS628981	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHKY-09A-01D A32347 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32347	SRX575037	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHKY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARHKY-09A-01D A32347 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32347_1_lane_dupsFlagged.bam	SRR1346159	@dbgap@:reads/SRP012000/SRS628981/SRX575037/SRR1346159/SRR1346159.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHKY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHKY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARHKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHKZ-09A-01D	DNA	EFO	SRS628309	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHKZ-09A-01D A31245 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31245	SRX573377	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHKZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARHKZ-09A-01D A31245 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31245_1_lane_dupsFlagged.bam	SRR1342649	@dbgap@:reads/SRP012000/SRS628309/SRX573377/SRR1342649/SRR1342649.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHKZ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHKZ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARHKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHKZ-09A-01D	DNA	EFO	SRS628309	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHKZ-09A-01D A31245 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31245	SRX573377	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHKZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARHKZ-09A-01D A31245 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31245_1_lane_dupsFlagged.bam	SRR1342649	@dbgap@:reads/SRP012000/SRS628309/SRX573377/SRR1342649/SRR1342649.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHKZ-09A-01D_TARGET-20-PARHKZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHKZ-09A-01D	DNA	EFO	SRS628309	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHKZ-09A-01D A31245 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31245	SRX573377	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHKZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARHKZ-09A-01D A31245 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31245_1_lane_dupsFlagged.bam	SRR1342649	@dbgap@:reads/SRP012000/SRS628309/SRX573377/SRR1342649/SRR1342649.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHKZ-09A-01D_TARGET-20-PARHKZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHKZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHKZ-10A-01D	DNA	EFO	SRS635918	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHKZ-10A-01D A42522 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42522	SRX593878	"Specific Capture analysis of normal sample TARGET-20-PARHKZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHKZ-10A-01D A42522 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42522_1_lane_dupsFlagged.bam	SRR1386355	@dbgap@:reads/SRP012000/SRS635918/SRX593878/SRR1386355/SRR1386355.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHKZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHKZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARHKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHKZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHKZ-10A-01D	DNA	EFO	SRS635918	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHKZ-10A-01D A42522 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42522	SRX593878	"Specific Capture analysis of normal sample TARGET-20-PARHKZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHKZ-10A-01D A42522 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42522_1_lane_dupsFlagged.bam	SRR1386355	@dbgap@:reads/SRP012000/SRS635918/SRX593878/SRR1386355/SRR1386355.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHKZ-09A-01D_TARGET-20-PARHKZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHKZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHKZ-10A-01D	DNA	EFO	SRS635918	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHKZ-10A-01D A42522 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42522	SRX593878	"Specific Capture analysis of normal sample TARGET-20-PARHKZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHKZ-10A-01D A42522 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42522_1_lane_dupsFlagged.bam	SRR1386355	@dbgap@:reads/SRP012000/SRS635918/SRX593878/SRR1386355/SRR1386355.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHKZ-09A-01D_TARGET-20-PARHKZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHPP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHPP-03A-01D	DNA	EFO	SRS628927	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHPP-03A-01D A32322 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32322	SRX574983	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHPP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARHPP-03A-01D A32322 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32322_1_lane_dupsFlagged.bam	SRR1346197	@dbgap@:reads/SRP012000/SRS628927/SRX574983/SRR1346197/SRR1346197.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHPP-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHPP-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARHPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHPP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHPP-04A-01D	DNA	EFO	SRS637557	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHPP-04A-01D A42738 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42738	SRX597997	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHPP-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARHPP-04A-01D A42738 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42738_1_lane_dupsFlagged.bam	SRR1395233	@dbgap@:reads/SRP012000/SRS637557/SRX597997/SRR1395233/SRR1395233.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHPP-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHPP-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHRS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHRS-09A-01D	DNA	EFO	SRS628743	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHRS-09A-01D A32194 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32194	SRX574438	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHRS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARHRS-09A-01D A32194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32194_1_lane_dupsFlagged.bam	SRR1344861	@dbgap@:reads/SRP012000/SRS628743/SRX574438/SRR1344861/SRR1344861.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHRS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHRS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARHSA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHSA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHSA-09A-01D	DNA	EFO	SRS635505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHSA-09A-01D A41751 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41751	SRX593227	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHSA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARHSA-09A-01D A41751 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41751_1_lane_dupsFlagged.bam	SRR1385601	@dbgap@:reads/SRP012000/SRS635505/SRX593227/SRR1385601/SRR1385601.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHSA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHSA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARHSA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHSA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHSA-09A-01D	DNA	EFO	SRS635505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHSA-09A-01D A41751 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41751	SRX593227	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHSA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARHSA-09A-01D A41751 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41751_1_lane_dupsFlagged.bam	SRR1385601	@dbgap@:reads/SRP012000/SRS635505/SRX593227/SRR1385601/SRR1385601.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHSA-09A-01D_TARGET-20-PARHSA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHSA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHSA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHSA-09A-01D	DNA	EFO	SRS635505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHSA-09A-01D A41751 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41751	SRX593227	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHSA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARHSA-09A-01D A41751 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41751_1_lane_dupsFlagged.bam	SRR1385601	@dbgap@:reads/SRP012000/SRS635505/SRX593227/SRR1385601/SRR1385601.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHSA-09A-01D_TARGET-20-PARHSA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHSA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHSA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHSA-14A-01D	DNA	EFO	SRS635996	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHSA-14A-01D A42612 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42612	SRX593956	"Specific Capture analysis of normal sample TARGET-20-PARHSA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARHSA-14A-01D A42612 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42612_1_lane_dupsFlagged.bam	SRR1386437	@dbgap@:reads/SRP012000/SRS635996/SRX593956/SRR1386437/SRR1386437.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHSA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHSA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARHSA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHSA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHSA-14A-01D	DNA	EFO	SRS635996	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHSA-14A-01D A42612 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42612	SRX593956	"Specific Capture analysis of normal sample TARGET-20-PARHSA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARHSA-14A-01D A42612 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42612_1_lane_dupsFlagged.bam	SRR1386437	@dbgap@:reads/SRP012000/SRS635996/SRX593956/SRR1386437/SRR1386437.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHSA-09A-01D_TARGET-20-PARHSA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHSA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHSA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHSA-14A-01D	DNA	EFO	SRS635996	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHSA-14A-01D A42612 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42612	SRX593956	"Specific Capture analysis of normal sample TARGET-20-PARHSA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARHSA-14A-01D A42612 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42612_1_lane_dupsFlagged.bam	SRR1386437	@dbgap@:reads/SRP012000/SRS635996/SRX593956/SRR1386437/SRR1386437.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHSA-09A-01D_TARGET-20-PARHSA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHUP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHUP-09A-01D	DNA	EFO	SRS633646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHUP-09A-01D A33392 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33392	SRX587941	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHUP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARHUP-09A-01D A33392 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33392_1_lane_dupsFlagged.bam	SRR1373857	@dbgap@:reads/SRP012000/SRS633646/SRX587941/SRR1373857/SRR1373857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHUP-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHUP-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARHUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHUP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHUP-09A-01D	DNA	EFO	SRS633646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHUP-09A-01D A33392 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33392	SRX587941	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHUP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARHUP-09A-01D A33392 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33392_1_lane_dupsFlagged.bam	SRR1373857	@dbgap@:reads/SRP012000/SRS633646/SRX587941/SRR1373857/SRR1373857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHUP-09A-01D_TARGET-20-PARHUP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHUP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHUP-09A-01D	DNA	EFO	SRS633646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHUP-09A-01D A33392 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33392	SRX587941	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHUP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARHUP-09A-01D A33392 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33392_1_lane_dupsFlagged.bam	SRR1373857	@dbgap@:reads/SRP012000/SRS633646/SRX587941/SRR1373857/SRR1373857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHUP-09A-01D_TARGET-20-PARHUP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHUP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHUP-14A-01D	DNA	EFO	SRS637507	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHUP-14A-01D A42907 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42907	SRX597942	"Specific Capture analysis of normal sample TARGET-20-PARHUP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHUP-14A-01D A42907 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42907_1_lane_dupsFlagged.bam	SRR1395215	@dbgap@:reads/SRP012000/SRS637507/SRX597942/SRR1395215/SRR1395215.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHUP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHUP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARHUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHUP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHUP-14A-01D	DNA	EFO	SRS637507	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHUP-14A-01D A42907 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42907	SRX597942	"Specific Capture analysis of normal sample TARGET-20-PARHUP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHUP-14A-01D A42907 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42907_1_lane_dupsFlagged.bam	SRR1395215	@dbgap@:reads/SRP012000/SRS637507/SRX597942/SRR1395215/SRR1395215.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHUP-09A-01D_TARGET-20-PARHUP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHUP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHUP-14A-01D	DNA	EFO	SRS637507	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHUP-14A-01D A42907 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42907	SRX597942	"Specific Capture analysis of normal sample TARGET-20-PARHUP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHUP-14A-01D A42907 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42907_1_lane_dupsFlagged.bam	SRR1395215	@dbgap@:reads/SRP012000/SRS637507/SRX597942/SRR1395215/SRR1395215.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHUP-09A-01D_TARGET-20-PARHUP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVI-03A-02D	DNA	EFO	SRS628961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVI-03A-02D A32323 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32323	SRX575018	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHVI-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARHVI-03A-02D A32323 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32323_1_lane_dupsFlagged.bam	SRR1346170	@dbgap@:reads/SRP012000/SRS628961/SRX575018/SRR1346170/SRR1346170.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHVI-03A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHVI-03A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARHVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVI-03A-02D	DNA	EFO	SRS628961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVI-03A-02D A32323 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32323	SRX575018	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHVI-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARHVI-03A-02D A32323 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32323_1_lane_dupsFlagged.bam	SRR1346170	@dbgap@:reads/SRP012000/SRS628961/SRX575018/SRR1346170/SRR1346170.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHVI-03A-02D_TARGET-20-PARHVI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVI-03A-02D	DNA	EFO	SRS628961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVI-03A-02D A32323 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32323	SRX575018	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHVI-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARHVI-03A-02D A32323 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32323_1_lane_dupsFlagged.bam	SRR1346170	@dbgap@:reads/SRP012000/SRS628961/SRX575018/SRR1346170/SRR1346170.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHVI-03A-02D_TARGET-20-PARHVI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVI-14A-01D	DNA	EFO	SRS637396	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVI-14A-01D A42787 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42787	SRX597804	"Specific Capture analysis of normal sample TARGET-20-PARHVI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARHVI-14A-01D A42787 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42787_1_lane_dupsFlagged.bam	SRR1395065	@dbgap@:reads/SRP012000/SRS637396/SRX597804/SRR1395065/SRR1395065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHVI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHVI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARHVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVI-14A-01D	DNA	EFO	SRS637396	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVI-14A-01D A42787 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42787	SRX597804	"Specific Capture analysis of normal sample TARGET-20-PARHVI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARHVI-14A-01D A42787 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42787_1_lane_dupsFlagged.bam	SRR1395065	@dbgap@:reads/SRP012000/SRS637396/SRX597804/SRR1395065/SRR1395065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHVI-03A-02D_TARGET-20-PARHVI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVI-14A-01D	DNA	EFO	SRS637396	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVI-14A-01D A42787 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42787	SRX597804	"Specific Capture analysis of normal sample TARGET-20-PARHVI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARHVI-14A-01D A42787 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42787_1_lane_dupsFlagged.bam	SRR1395065	@dbgap@:reads/SRP012000/SRS637396/SRX597804/SRR1395065/SRR1395065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHVI-03A-02D_TARGET-20-PARHVI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-04A-01D	DNA	EFO	SRS637511	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVK-04A-01D A42709 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42709	SRX597947	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHVK-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARHVK-04A-01D A42709 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42709_1_lane_dupsFlagged.bam	SRR1395294	@dbgap@:reads/SRP012000/SRS637511/SRX597947/SRR1395294/SRR1395294.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHVK-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHVK-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-04A-01D	DNA	EFO	SRS637511	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVK-04A-01D A42709 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42709	SRX597947	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHVK-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARHVK-04A-01D A42709 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42709_1_lane_dupsFlagged.bam	SRR1395294	@dbgap@:reads/SRP012000/SRS637511/SRX597947/SRR1395294/SRR1395294.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHVK-04A-01D_TARGET-20-PARHVK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-04A-01D	DNA	EFO	SRS637511	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVK-04A-01D A42709 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42709	SRX597947	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHVK-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARHVK-04A-01D A42709 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42709_1_lane_dupsFlagged.bam	SRR1395294	@dbgap@:reads/SRP012000/SRS637511/SRX597947/SRR1395294/SRR1395294.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHVK-04A-01D_TARGET-20-PARHVK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-03D	DNA	EFO	SRS628735	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVK-09A-03D A32195 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32195	SRX574430	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHVK-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARHVK-09A-03D A32195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32195_1_lane_dupsFlagged.bam	SRR1344891	@dbgap@:reads/SRP012000/SRS628735/SRX574430/SRR1344891/SRR1344891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHVK-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHVK-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-03D	DNA	EFO	SRS628735	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVK-09A-03D A32195 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32195	SRX574430	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHVK-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARHVK-09A-03D A32195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32195_1_lane_dupsFlagged.bam	SRR1344891	@dbgap@:reads/SRP012000/SRS628735/SRX574430/SRR1344891/SRR1344891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHVK-09A-03D_TARGET-20-PARHVK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-03D	DNA	EFO	SRS628735	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVK-09A-03D A32195 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32195	SRX574430	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHVK-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARHVK-09A-03D A32195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32195_1_lane_dupsFlagged.bam	SRR1344891	@dbgap@:reads/SRP012000/SRS628735/SRX574430/SRR1344891/SRR1344891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHVK-09A-03D_TARGET-20-PARHVK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVK-14A-01D A42906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42906	SRX597900	"Specific Capture analysis of normal sample TARGET-20-PARHVK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHVK-14A-01D A42906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42906_1_lane_dupsFlagged.bam	SRR1395154	@dbgap@:reads/SRP012000/SRS118048/SRX597900/SRR1395154/SRR1395154.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHVK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHVK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVK-14A-01D A42906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42906	SRX597900	"Specific Capture analysis of normal sample TARGET-20-PARHVK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHVK-14A-01D A42906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42906_1_lane_dupsFlagged.bam	SRR1395154	@dbgap@:reads/SRP012000/SRS118048/SRX597900/SRR1395154/SRR1395154.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHVK-04A-01D_TARGET-20-PARHVK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVK-14A-01D A42906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42906	SRX597900	"Specific Capture analysis of normal sample TARGET-20-PARHVK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHVK-14A-01D A42906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42906_1_lane_dupsFlagged.bam	SRR1395154	@dbgap@:reads/SRP012000/SRS118048/SRX597900/SRR1395154/SRR1395154.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHVK-04A-01D_TARGET-20-PARHVK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVK-14A-01D A42906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42906	SRX597900	"Specific Capture analysis of normal sample TARGET-20-PARHVK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHVK-14A-01D A42906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42906_1_lane_dupsFlagged.bam	SRR1395154	@dbgap@:reads/SRP012000/SRS118048/SRX597900/SRR1395154/SRR1395154.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHVK-09A-03D_TARGET-20-PARHVK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-14A-01D	DNA	EFO	SRS118048	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVK-14A-01D A42906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42906	SRX597900	"Specific Capture analysis of normal sample TARGET-20-PARHVK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHVK-14A-01D A42906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42906_1_lane_dupsFlagged.bam	SRR1395154	@dbgap@:reads/SRP012000/SRS118048/SRX597900/SRR1395154/SRR1395154.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHVK-09A-03D_TARGET-20-PARHVK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHXT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHXT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHXT-03A-01D	DNA	EFO	SRS635474	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHXT-03A-01D A41752 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41752	SRX593196	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHXT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARHXT-03A-01D A41752 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41752_1_lane_dupsFlagged.bam	SRR1385652	@dbgap@:reads/SRP012000/SRS635474/SRX593196/SRR1385652/SRR1385652.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHXT-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHXT-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARHXT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHXT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHXT-03A-01D	DNA	EFO	SRS635474	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHXT-03A-01D A41752 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41752	SRX593196	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHXT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARHXT-03A-01D A41752 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41752_1_lane_dupsFlagged.bam	SRR1385652	@dbgap@:reads/SRP012000/SRS635474/SRX593196/SRR1385652/SRR1385652.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHXT-03A-01D_TARGET-20-PARHXT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHXT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHXT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHXT-03A-01D	DNA	EFO	SRS635474	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHXT-03A-01D A41752 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41752	SRX593196	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHXT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARHXT-03A-01D A41752 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41752_1_lane_dupsFlagged.bam	SRR1385652	@dbgap@:reads/SRP012000/SRS635474/SRX593196/SRR1385652/SRR1385652.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHXT-03A-01D_TARGET-20-PARHXT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHXT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHXT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHXT-04A-01D	DNA	EFO	SRS637538	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHXT-04A-01D A42737 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42737	SRX597976	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHXT-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARHXT-04A-01D A42737 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42737_1_lane_dupsFlagged.bam	SRR1395253	@dbgap@:reads/SRP012000/SRS637538/SRX597976/SRR1395253/SRR1395253.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHXT-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHXT-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARHXT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHXT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHXT-04A-01D	DNA	EFO	SRS637538	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHXT-04A-01D A42737 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42737	SRX597976	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHXT-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARHXT-04A-01D A42737 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42737_1_lane_dupsFlagged.bam	SRR1395253	@dbgap@:reads/SRP012000/SRS637538/SRX597976/SRR1395253/SRR1395253.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHXT-04A-01D_TARGET-20-PARHXT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHXT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHXT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHXT-04A-01D	DNA	EFO	SRS637538	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHXT-04A-01D A42737 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42737	SRX597976	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHXT-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARHXT-04A-01D A42737 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42737_1_lane_dupsFlagged.bam	SRR1395253	@dbgap@:reads/SRP012000/SRS637538/SRX597976/SRR1395253/SRR1395253.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHXT-04A-01D_TARGET-20-PARHXT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHXT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHXT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHXT-14A-01D	DNA	EFO	SRS635774	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHXT-14A-01D A42289 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42289	SRX593608	"Specific Capture analysis of normal sample TARGET-20-PARHXT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARHXT-14A-01D A42289 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42289_1_lane_dupsFlagged.bam	SRR1386047	@dbgap@:reads/SRP012000/SRS635774/SRX593608/SRR1386047/SRR1386047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHXT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHXT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARHXT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHXT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHXT-14A-01D	DNA	EFO	SRS635774	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHXT-14A-01D A42289 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42289	SRX593608	"Specific Capture analysis of normal sample TARGET-20-PARHXT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARHXT-14A-01D A42289 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42289_1_lane_dupsFlagged.bam	SRR1386047	@dbgap@:reads/SRP012000/SRS635774/SRX593608/SRR1386047/SRR1386047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHXT-03A-01D_TARGET-20-PARHXT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHXT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHXT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHXT-14A-01D	DNA	EFO	SRS635774	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHXT-14A-01D A42289 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42289	SRX593608	"Specific Capture analysis of normal sample TARGET-20-PARHXT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARHXT-14A-01D A42289 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42289_1_lane_dupsFlagged.bam	SRR1386047	@dbgap@:reads/SRP012000/SRS635774/SRX593608/SRR1386047/SRR1386047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHXT-03A-01D_TARGET-20-PARHXT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHXT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHXT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHXT-14A-01D	DNA	EFO	SRS635774	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHXT-14A-01D A42289 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42289	SRX593608	"Specific Capture analysis of normal sample TARGET-20-PARHXT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARHXT-14A-01D A42289 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42289_1_lane_dupsFlagged.bam	SRR1386047	@dbgap@:reads/SRP012000/SRS635774/SRX593608/SRR1386047/SRR1386047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHXT-04A-01D_TARGET-20-PARHXT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHXT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHXT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHXT-14A-01D	DNA	EFO	SRS635774	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHXT-14A-01D A42289 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42289	SRX593608	"Specific Capture analysis of normal sample TARGET-20-PARHXT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARHXT-14A-01D A42289 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42289_1_lane_dupsFlagged.bam	SRR1386047	@dbgap@:reads/SRP012000/SRS635774/SRX593608/SRR1386047/SRR1386047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHXT-04A-01D_TARGET-20-PARHXT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHYP-09A-01D	DNA	EFO	SRS633677	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHYP-09A-01D A33368 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33368	SRX587971	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHYP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARHYP-09A-01D A33368 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33368_1_lane_dupsFlagged.bam	SRR1373780	@dbgap@:reads/SRP012000/SRS633677/SRX587971/SRR1373780/SRR1373780.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHYP-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHYP-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARHYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHYP-09A-01D	DNA	EFO	SRS633677	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHYP-09A-01D A33368 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33368	SRX587971	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHYP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARHYP-09A-01D A33368 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33368_1_lane_dupsFlagged.bam	SRR1373780	@dbgap@:reads/SRP012000/SRS633677/SRX587971/SRR1373780/SRR1373780.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHYP-09A-01D_TARGET-20-PARHYP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHYP-09A-01D	DNA	EFO	SRS633677	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHYP-09A-01D A33368 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33368	SRX587971	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARHYP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARHYP-09A-01D A33368 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33368_1_lane_dupsFlagged.bam	SRR1373780	@dbgap@:reads/SRP012000/SRS633677/SRX587971/SRR1373780/SRR1373780.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHYP-09A-01D_TARGET-20-PARHYP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARHYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHYP-14A-01D	DNA	EFO	SRS637489	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHYP-14A-01D A42900 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42900	SRX597919	"Specific Capture analysis of normal sample TARGET-20-PARHYP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHYP-14A-01D A42900 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42900_1_lane_dupsFlagged.bam	SRR1395160	@dbgap@:reads/SRP012000/SRS637489/SRX597919/SRR1395160/SRR1395160.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARHYP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARHYP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARHYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHYP-14A-01D	DNA	EFO	SRS637489	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHYP-14A-01D A42900 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42900	SRX597919	"Specific Capture analysis of normal sample TARGET-20-PARHYP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHYP-14A-01D A42900 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42900_1_lane_dupsFlagged.bam	SRR1395160	@dbgap@:reads/SRP012000/SRS637489/SRX597919/SRR1395160/SRR1395160.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHYP-09A-01D_TARGET-20-PARHYP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARHYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARHYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHYP-14A-01D	DNA	EFO	SRS637489	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHYP-14A-01D A42900 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42900	SRX597919	"Specific Capture analysis of normal sample TARGET-20-PARHYP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARHYP-14A-01D A42900 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42900_1_lane_dupsFlagged.bam	SRR1395160	@dbgap@:reads/SRP012000/SRS637489/SRX597919/SRR1395160/SRR1395160.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARHYP-09A-01D_TARGET-20-PARHYP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-01D	DNA	EFO	SRS287498	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIEG-09A-01D A32196 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32196	SRX574408	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARIEG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARIEG-09A-01D A32196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32196_1_lane_dupsFlagged.bam	SRR1344872	@dbgap@:reads/SRP012000/SRS287498/SRX574408/SRR1344872/SRR1344872.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARIEG-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARIEG-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARIFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARIFD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIFD-09A-01D	DNA	EFO	SRS635467	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIFD-09A-01D A41753 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41753	SRX593189	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARIFD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARIFD-09A-01D A41753 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41753_1_lane_dupsFlagged.bam	SRR1385620	@dbgap@:reads/SRP012000/SRS635467/SRX593189/SRR1385620/SRR1385620.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARIFD-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARIFD-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-03A-01D	DNA	EFO	SRS628279	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIHK-03A-01D A31246 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31246	SRX573332	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARIHK-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARIHK-03A-01D A31246 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31246_1_lane_dupsFlagged.bam	SRR1342616	@dbgap@:reads/SRP012000/SRS628279/SRX573332/SRR1342616/SRR1342616.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARIHK-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARIHK-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-03A-01D	DNA	EFO	SRS628279	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIHK-03A-01D A31246 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31246	SRX573332	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARIHK-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARIHK-03A-01D A31246 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31246_1_lane_dupsFlagged.bam	SRR1342616	@dbgap@:reads/SRP012000/SRS628279/SRX573332/SRR1342616/SRR1342616.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARIHK-03A-01D_TARGET-20-PARIHK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-03A-01D	DNA	EFO	SRS628279	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIHK-03A-01D A31246 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31246	SRX573332	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARIHK-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARIHK-03A-01D A31246 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31246_1_lane_dupsFlagged.bam	SRR1342616	@dbgap@:reads/SRP012000/SRS628279/SRX573332/SRR1342616/SRR1342616.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARIHK-03A-01D_TARGET-20-PARIHK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-01D	DNA	EFO	SRS637480	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIHK-14A-01D A42908 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42908	SRX597907	"Specific Capture analysis of normal sample TARGET-20-PARIHK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARIHK-14A-01D A42908 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42908_1_lane_dupsFlagged.bam	SRR1395165	@dbgap@:reads/SRP012000/SRS637480/SRX597907/SRR1395165/SRR1395165.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARIHK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARIHK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-01D	DNA	EFO	SRS637480	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIHK-14A-01D A42908 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42908	SRX597907	"Specific Capture analysis of normal sample TARGET-20-PARIHK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARIHK-14A-01D A42908 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42908_1_lane_dupsFlagged.bam	SRR1395165	@dbgap@:reads/SRP012000/SRS637480/SRX597907/SRR1395165/SRR1395165.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARIHK-03A-01D_TARGET-20-PARIHK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-14A-01D	DNA	EFO	SRS637480	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIHK-14A-01D A42908 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42908	SRX597907	"Specific Capture analysis of normal sample TARGET-20-PARIHK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARIHK-14A-01D A42908 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42908_1_lane_dupsFlagged.bam	SRR1395165	@dbgap@:reads/SRP012000/SRS637480/SRX597907/SRR1395165/SRR1395165.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARIHK-03A-01D_TARGET-20-PARIHK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARILH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARILH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARILH-03A-01D	DNA	EFO	SRS628918	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARILH-03A-01D A32346 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32346	SRX574974	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARILH-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARILH-03A-01D A32346 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32346_1_lane_dupsFlagged.bam	SRR1346207	@dbgap@:reads/SRP012000/SRS628918/SRX574974/SRR1346207/SRR1346207.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARILH-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARILH-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARILH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARILH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARILH-03A-01D	DNA	EFO	SRS628918	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARILH-03A-01D A32346 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32346	SRX574974	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARILH-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARILH-03A-01D A32346 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32346_1_lane_dupsFlagged.bam	SRR1346207	@dbgap@:reads/SRP012000/SRS628918/SRX574974/SRR1346207/SRR1346207.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARILH-03A-01D_TARGET-20-PARILH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARILH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARILH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARILH-03A-01D	DNA	EFO	SRS628918	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARILH-03A-01D A32346 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32346	SRX574974	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARILH-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARILH-03A-01D A32346 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32346_1_lane_dupsFlagged.bam	SRR1346207	@dbgap@:reads/SRP012000/SRS628918/SRX574974/SRR1346207/SRR1346207.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARILH-03A-01D_TARGET-20-PARILH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARILH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARILH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARILH-04A-01D	DNA	EFO	SRS637311	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARILH-04A-01D A42229 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42229	SRX597677	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARILH-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARILH-04A-01D A42229 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42229_1_lane_dupsFlagged.bam	SRR1395003	@dbgap@:reads/SRP012000/SRS637311/SRX597677/SRR1395003/SRR1395003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARILH-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARILH-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARILH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARILH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARILH-04A-01D	DNA	EFO	SRS637311	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARILH-04A-01D A42229 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42229	SRX597677	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARILH-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARILH-04A-01D A42229 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42229_1_lane_dupsFlagged.bam	SRR1395003	@dbgap@:reads/SRP012000/SRS637311/SRX597677/SRR1395003/SRR1395003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARILH-04A-01D_TARGET-20-PARILH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARILH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARILH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARILH-04A-01D	DNA	EFO	SRS637311	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARILH-04A-01D A42229 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42229	SRX597677	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARILH-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARILH-04A-01D A42229 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42229_1_lane_dupsFlagged.bam	SRR1395003	@dbgap@:reads/SRP012000/SRS637311/SRX597677/SRR1395003/SRR1395003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARILH-04A-01D_TARGET-20-PARILH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARILH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARILH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARILH-14A-01D	DNA	EFO	SRS635711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARILH-14A-01D A41664 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41664	SRX593534	"Specific Capture analysis of normal sample TARGET-20-PARILH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARILH-14A-01D A41664 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41664_1_lane_dupsFlagged.bam	SRR1386004	@dbgap@:reads/SRP012000/SRS635711/SRX593534/SRR1386004/SRR1386004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARILH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARILH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARILH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARILH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARILH-14A-01D	DNA	EFO	SRS635711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARILH-14A-01D A41664 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41664	SRX593534	"Specific Capture analysis of normal sample TARGET-20-PARILH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARILH-14A-01D A41664 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41664_1_lane_dupsFlagged.bam	SRR1386004	@dbgap@:reads/SRP012000/SRS635711/SRX593534/SRR1386004/SRR1386004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARILH-03A-01D_TARGET-20-PARILH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARILH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARILH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARILH-14A-01D	DNA	EFO	SRS635711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARILH-14A-01D A41664 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41664	SRX593534	"Specific Capture analysis of normal sample TARGET-20-PARILH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARILH-14A-01D A41664 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41664_1_lane_dupsFlagged.bam	SRR1386004	@dbgap@:reads/SRP012000/SRS635711/SRX593534/SRR1386004/SRR1386004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARILH-03A-01D_TARGET-20-PARILH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARILH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARILH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARILH-14A-01D	DNA	EFO	SRS635711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARILH-14A-01D A41664 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41664	SRX593534	"Specific Capture analysis of normal sample TARGET-20-PARILH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARILH-14A-01D A41664 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41664_1_lane_dupsFlagged.bam	SRR1386004	@dbgap@:reads/SRP012000/SRS635711/SRX593534/SRR1386004/SRR1386004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARILH-04A-01D_TARGET-20-PARILH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARILH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARILH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARILH-14A-01D	DNA	EFO	SRS635711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARILH-14A-01D A41664 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41664	SRX593534	"Specific Capture analysis of normal sample TARGET-20-PARILH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARILH-14A-01D A41664 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41664_1_lane_dupsFlagged.bam	SRR1386004	@dbgap@:reads/SRP012000/SRS635711/SRX593534/SRR1386004/SRR1386004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARILH-04A-01D_TARGET-20-PARILH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-03A-01D	DNA	EFO	SRS270726	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIMT-03A-01D A31277 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31277	SRX573329	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARIMT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARIMT-03A-01D A31277 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31277_1_lane_dupsFlagged.bam	SRR1342633	@dbgap@:reads/SRP012000/SRS270726/SRX573329/SRR1342633/SRR1342633.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARIMT-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARIMT-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-03A-01D	DNA	EFO	SRS270726	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIMT-03A-01D A31277 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31277	SRX573329	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARIMT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARIMT-03A-01D A31277 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31277_1_lane_dupsFlagged.bam	SRR1342633	@dbgap@:reads/SRP012000/SRS270726/SRX573329/SRR1342633/SRR1342633.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARIMT-03A-01D_TARGET-20-PARIMT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-03A-01D	DNA	EFO	SRS270726	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIMT-03A-01D A31277 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31277	SRX573329	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARIMT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARIMT-03A-01D A31277 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31277_1_lane_dupsFlagged.bam	SRR1342633	@dbgap@:reads/SRP012000/SRS270726/SRX573329/SRR1342633/SRR1342633.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARIMT-03A-01D_TARGET-20-PARIMT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-14A-01D	DNA	EFO	SRS635980	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIMT-14A-01D A42573 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42573	SRX593944	"Specific Capture analysis of normal sample TARGET-20-PARIMT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARIMT-14A-01D A42573 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42573_1_lane_dupsFlagged.bam	SRR1386428	@dbgap@:reads/SRP012000/SRS635980/SRX593944/SRR1386428/SRR1386428.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARIMT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARIMT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-14A-01D	DNA	EFO	SRS635980	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIMT-14A-01D A42573 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42573	SRX593944	"Specific Capture analysis of normal sample TARGET-20-PARIMT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARIMT-14A-01D A42573 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42573_1_lane_dupsFlagged.bam	SRR1386428	@dbgap@:reads/SRP012000/SRS635980/SRX593944/SRR1386428/SRR1386428.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARIMT-03A-01D_TARGET-20-PARIMT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-14A-01D	DNA	EFO	SRS635980	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIMT-14A-01D A42573 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42573	SRX593944	"Specific Capture analysis of normal sample TARGET-20-PARIMT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARIMT-14A-01D A42573 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42573_1_lane_dupsFlagged.bam	SRR1386428	@dbgap@:reads/SRP012000/SRS635980/SRX593944/SRR1386428/SRR1386428.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARIMT-03A-01D_TARGET-20-PARIMT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARINM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARINM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARINM-09A-01D	DNA	EFO	SRS628689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARINM-09A-01D A32197 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32197	SRX574382	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARINM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARINM-09A-01D A32197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32197_1_lane_dupsFlagged.bam	SRR1344897	@dbgap@:reads/SRP012000/SRS628689/SRX574382/SRR1344897/SRR1344897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARINM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARINM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARINM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARINM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARINM-09A-01D	DNA	EFO	SRS628689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARINM-09A-01D A32197 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32197	SRX574382	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARINM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARINM-09A-01D A32197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32197_1_lane_dupsFlagged.bam	SRR1344897	@dbgap@:reads/SRP012000/SRS628689/SRX574382/SRR1344897/SRR1344897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARINM-09A-01D_TARGET-20-PARINM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARINM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARINM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARINM-09A-01D	DNA	EFO	SRS628689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARINM-09A-01D A32197 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32197	SRX574382	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARINM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARINM-09A-01D A32197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32197_1_lane_dupsFlagged.bam	SRR1344897	@dbgap@:reads/SRP012000/SRS628689/SRX574382/SRR1344897/SRR1344897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARINM-09A-01D_TARGET-20-PARINM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARINM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARINM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARINM-14A-01D	DNA	EFO	SRS635632	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARINM-14A-01D A41665 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41665	SRX593454	"Specific Capture analysis of normal sample TARGET-20-PARINM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARINM-14A-01D A41665 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41665_1_lane_dupsFlagged.bam	SRR1385933	@dbgap@:reads/SRP012000/SRS635632/SRX593454/SRR1385933/SRR1385933.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARINM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARINM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARINM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARINM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARINM-14A-01D	DNA	EFO	SRS635632	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARINM-14A-01D A41665 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41665	SRX593454	"Specific Capture analysis of normal sample TARGET-20-PARINM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARINM-14A-01D A41665 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41665_1_lane_dupsFlagged.bam	SRR1385933	@dbgap@:reads/SRP012000/SRS635632/SRX593454/SRR1385933/SRR1385933.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARINM-09A-01D_TARGET-20-PARINM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARINM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARINM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARINM-14A-01D	DNA	EFO	SRS635632	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARINM-14A-01D A41665 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41665	SRX593454	"Specific Capture analysis of normal sample TARGET-20-PARINM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARINM-14A-01D A41665 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41665_1_lane_dupsFlagged.bam	SRR1385933	@dbgap@:reads/SRP012000/SRS635632/SRX593454/SRR1385933/SRR1385933.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARINM-09A-01D_TARGET-20-PARINM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARIYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARIYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIYP-03A-01D	DNA	EFO	SRS635455	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIYP-03A-01D A41739 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41739	SRX593177	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARIYP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARIYP-03A-01D A41739 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41739_1_lane_dupsFlagged.bam	SRR1385660	@dbgap@:reads/SRP012000/SRS635455/SRX593177/SRR1385660/SRR1385660.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARIYP-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARIYP-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-03A-01D	DNA	EFO	SRS628752	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIZR-03A-01D A32198 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32198	SRX574448	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARIZR-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARIZR-03A-01D A32198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32198_1_lane_dupsFlagged.bam	SRR1344874	@dbgap@:reads/SRP012000/SRS628752/SRX574448/SRR1344874/SRR1344874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARIZR-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARIZR-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-03A-01D	DNA	EFO	SRS628752	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIZR-03A-01D A32198 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32198	SRX574448	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARIZR-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARIZR-03A-01D A32198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32198_1_lane_dupsFlagged.bam	SRR1344874	@dbgap@:reads/SRP012000/SRS628752/SRX574448/SRR1344874/SRR1344874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARIZR-03A-01D_TARGET-20-PARIZR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-03A-01D	DNA	EFO	SRS628752	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIZR-03A-01D A32198 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32198	SRX574448	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARIZR-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARIZR-03A-01D A32198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32198_1_lane_dupsFlagged.bam	SRR1344874	@dbgap@:reads/SRP012000/SRS628752/SRX574448/SRR1344874/SRR1344874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARIZR-03A-01D_TARGET-20-PARIZR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-14A-01D	DNA	EFO	SRS301090	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIZR-14A-01D A42366 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42366	SRX593564	"Specific Capture analysis of normal sample TARGET-20-PARIZR-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARIZR-14A-01D A42366 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42366_1_lane_dupsFlagged.bam	SRR1386061	@dbgap@:reads/SRP012000/SRS301090/SRX593564/SRR1386061/SRR1386061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARIZR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARIZR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-14A-01D	DNA	EFO	SRS301090	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIZR-14A-01D A42366 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42366	SRX593564	"Specific Capture analysis of normal sample TARGET-20-PARIZR-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARIZR-14A-01D A42366 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42366_1_lane_dupsFlagged.bam	SRR1386061	@dbgap@:reads/SRP012000/SRS301090/SRX593564/SRR1386061/SRR1386061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARIZR-03A-01D_TARGET-20-PARIZR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-14A-01D	DNA	EFO	SRS301090	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIZR-14A-01D A42366 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42366	SRX593564	"Specific Capture analysis of normal sample TARGET-20-PARIZR-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARIZR-14A-01D A42366 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42366_1_lane_dupsFlagged.bam	SRR1386061	@dbgap@:reads/SRP012000/SRS301090/SRX593564/SRR1386061/SRR1386061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARIZR-03A-01D_TARGET-20-PARIZR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-01D	DNA	EFO	SRS628975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJCR-09A-01D A32324 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32324	SRX575032	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJCR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARJCR-09A-01D A32324 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32324_1_lane_dupsFlagged.bam	SRR1346161	@dbgap@:reads/SRP012000/SRS628975/SRX575032/SRR1346161/SRR1346161.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJCR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJCR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-01D	DNA	EFO	SRS628975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJCR-09A-01D A32324 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32324	SRX575032	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJCR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARJCR-09A-01D A32324 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32324_1_lane_dupsFlagged.bam	SRR1346161	@dbgap@:reads/SRP012000/SRS628975/SRX575032/SRR1346161/SRR1346161.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJCR-09A-01D_TARGET-20-PARJCR-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-01D	DNA	EFO	SRS628975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJCR-09A-01D A32324 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32324	SRX575032	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJCR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARJCR-09A-01D A32324 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32324_1_lane_dupsFlagged.bam	SRR1346161	@dbgap@:reads/SRP012000/SRS628975/SRX575032/SRR1346161/SRR1346161.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJCR-09A-01D_TARGET-20-PARJCR-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-02D	DNA	EFO	SRS637400	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJCR-14A-02D A42844 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42844	SRX597806	"Specific Capture analysis of normal sample TARGET-20-PARJCR-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARJCR-14A-02D A42844 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42844_1_lane_dupsFlagged.bam	SRR1395102	@dbgap@:reads/SRP012000/SRS637400/SRX597806/SRR1395102/SRR1395102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJCR-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJCR-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-02D	DNA	EFO	SRS637400	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJCR-14A-02D A42844 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42844	SRX597806	"Specific Capture analysis of normal sample TARGET-20-PARJCR-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARJCR-14A-02D A42844 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42844_1_lane_dupsFlagged.bam	SRR1395102	@dbgap@:reads/SRP012000/SRS637400/SRX597806/SRR1395102/SRR1395102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJCR-09A-01D_TARGET-20-PARJCR-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-14A-02D	DNA	EFO	SRS637400	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJCR-14A-02D A42844 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42844	SRX597806	"Specific Capture analysis of normal sample TARGET-20-PARJCR-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARJCR-14A-02D A42844 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42844_1_lane_dupsFlagged.bam	SRR1395102	@dbgap@:reads/SRP012000/SRS637400/SRX597806/SRR1395102/SRR1395102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJCR-09A-01D_TARGET-20-PARJCR-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJET-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJET-03A-01D	DNA	EFO	SRS635494	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJET-03A-01D A41755 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41755	SRX593214	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJET-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARJET-03A-01D A41755 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41755_1_lane_dupsFlagged.bam	SRR1385587	@dbgap@:reads/SRP012000/SRS635494/SRX593214/SRR1385587/SRR1385587.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJET-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJET-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARJGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJGD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJGD-03A-01D	DNA	EFO	SRS635434	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJGD-03A-01D A41754 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41754	SRX593156	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJGD-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARJGD-03A-01D A41754 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41754_1_lane_dupsFlagged.bam	SRR1385661	@dbgap@:reads/SRP012000/SRS635434/SRX593156/SRR1385661/SRR1385661.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJGD-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJGD-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARJGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJGD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJGD-03A-01D	DNA	EFO	SRS635434	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJGD-03A-01D A41754 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41754	SRX593156	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJGD-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARJGD-03A-01D A41754 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41754_1_lane_dupsFlagged.bam	SRR1385661	@dbgap@:reads/SRP012000/SRS635434/SRX593156/SRR1385661/SRR1385661.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJGD-03A-01D_TARGET-20-PARJGD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJGD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJGD-03A-01D	DNA	EFO	SRS635434	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJGD-03A-01D A41754 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41754	SRX593156	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJGD-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARJGD-03A-01D A41754 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41754_1_lane_dupsFlagged.bam	SRR1385661	@dbgap@:reads/SRP012000/SRS635434/SRX593156/SRR1385661/SRR1385661.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJGD-03A-01D_TARGET-20-PARJGD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJGD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJGD-14A-01D	DNA	EFO	SRS637501	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJGD-14A-01D A42903 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42903	SRX597934	"Specific Capture analysis of normal sample TARGET-20-PARJGD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARJGD-14A-01D A42903 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42903_1_lane_dupsFlagged.bam	SRR1395159	@dbgap@:reads/SRP012000/SRS637501/SRX597934/SRR1395159/SRR1395159.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJGD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJGD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARJGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJGD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJGD-14A-01D	DNA	EFO	SRS637501	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJGD-14A-01D A42903 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42903	SRX597934	"Specific Capture analysis of normal sample TARGET-20-PARJGD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARJGD-14A-01D A42903 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42903_1_lane_dupsFlagged.bam	SRR1395159	@dbgap@:reads/SRP012000/SRS637501/SRX597934/SRR1395159/SRR1395159.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJGD-03A-01D_TARGET-20-PARJGD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJGD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJGD-14A-01D	DNA	EFO	SRS637501	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJGD-14A-01D A42903 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42903	SRX597934	"Specific Capture analysis of normal sample TARGET-20-PARJGD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARJGD-14A-01D A42903 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42903_1_lane_dupsFlagged.bam	SRR1395159	@dbgap@:reads/SRP012000/SRS637501/SRX597934/SRR1395159/SRR1395159.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJGD-03A-01D_TARGET-20-PARJGD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJHP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJHP-03A-01D	DNA	EFO	SRS635436	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJHP-03A-01D A41756 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41756	SRX593158	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJHP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARJHP-03A-01D A41756 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41756_1_lane_dupsFlagged.bam	SRR1385580	@dbgap@:reads/SRP012000/SRS635436/SRX593158/SRR1385580/SRR1385580.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJHP-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJHP-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARJHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJHP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJHP-03A-01D	DNA	EFO	SRS635436	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJHP-03A-01D A41756 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41756	SRX593158	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJHP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARJHP-03A-01D A41756 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41756_1_lane_dupsFlagged.bam	SRR1385580	@dbgap@:reads/SRP012000/SRS635436/SRX593158/SRR1385580/SRR1385580.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJHP-03A-01D_TARGET-20-PARJHP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJHP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJHP-03A-01D	DNA	EFO	SRS635436	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJHP-03A-01D A41756 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41756	SRX593158	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJHP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARJHP-03A-01D A41756 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41756_1_lane_dupsFlagged.bam	SRR1385580	@dbgap@:reads/SRP012000/SRS635436/SRX593158/SRR1385580/SRR1385580.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJHP-03A-01D_TARGET-20-PARJHP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJHP-14A-01D	DNA	EFO	SRS635720	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJHP-14A-01D A42327 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42327	SRX593547	"Specific Capture analysis of normal sample TARGET-20-PARJHP-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARJHP-14A-01D A42327 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42327_1_lane_dupsFlagged.bam	SRR1386018	@dbgap@:reads/SRP012000/SRS635720/SRX593547/SRR1386018/SRR1386018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJHP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJHP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARJHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJHP-14A-01D	DNA	EFO	SRS635720	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJHP-14A-01D A42327 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42327	SRX593547	"Specific Capture analysis of normal sample TARGET-20-PARJHP-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARJHP-14A-01D A42327 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42327_1_lane_dupsFlagged.bam	SRR1386018	@dbgap@:reads/SRP012000/SRS635720/SRX593547/SRR1386018/SRR1386018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJHP-03A-01D_TARGET-20-PARJHP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJHP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJHP-14A-01D	DNA	EFO	SRS635720	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJHP-14A-01D A42327 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42327	SRX593547	"Specific Capture analysis of normal sample TARGET-20-PARJHP-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARJHP-14A-01D A42327 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42327_1_lane_dupsFlagged.bam	SRR1386018	@dbgap@:reads/SRP012000/SRS635720/SRX593547/SRR1386018/SRR1386018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJHP-03A-01D_TARGET-20-PARJHP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJKM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJKM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJKM-04A-01D	DNA	EFO	SRS637342	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJKM-04A-01D A42200 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42200	SRX597733	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJKM-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARJKM-04A-01D A42200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42200_1_lane_dupsFlagged.bam	SRR1394959	@dbgap@:reads/SRP012000/SRS637342/SRX597733/SRR1394959/SRR1394959.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJKM-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJKM-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARJKM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJKM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJKM-04A-01D	DNA	EFO	SRS637342	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJKM-04A-01D A42200 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42200	SRX597733	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJKM-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARJKM-04A-01D A42200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42200_1_lane_dupsFlagged.bam	SRR1394959	@dbgap@:reads/SRP012000/SRS637342/SRX597733/SRR1394959/SRR1394959.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJKM-04A-01D_TARGET-20-PARJKM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJKM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJKM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJKM-04A-01D	DNA	EFO	SRS637342	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJKM-04A-01D A42200 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42200	SRX597733	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJKM-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARJKM-04A-01D A42200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42200_1_lane_dupsFlagged.bam	SRR1394959	@dbgap@:reads/SRP012000/SRS637342/SRX597733/SRR1394959/SRR1394959.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJKM-04A-01D_TARGET-20-PARJKM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJKM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJKM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJKM-09A-01D	DNA	EFO	SRS633674	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJKM-09A-01D A33381 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33381	SRX587968	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJKM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARJKM-09A-01D A33381 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33381_1_lane_dupsFlagged.bam	SRR1373801	@dbgap@:reads/SRP012000/SRS633674/SRX587968/SRR1373801/SRR1373801.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJKM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJKM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARJKM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJKM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJKM-09A-01D	DNA	EFO	SRS633674	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJKM-09A-01D A33381 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33381	SRX587968	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJKM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARJKM-09A-01D A33381 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33381_1_lane_dupsFlagged.bam	SRR1373801	@dbgap@:reads/SRP012000/SRS633674/SRX587968/SRR1373801/SRR1373801.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJKM-09A-01D_TARGET-20-PARJKM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJKM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJKM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJKM-09A-01D	DNA	EFO	SRS633674	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJKM-09A-01D A33381 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33381	SRX587968	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJKM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARJKM-09A-01D A33381 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33381_1_lane_dupsFlagged.bam	SRR1373801	@dbgap@:reads/SRP012000/SRS633674/SRX587968/SRR1373801/SRR1373801.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJKM-09A-01D_TARGET-20-PARJKM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJKM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJKM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJKM-14A-01D	DNA	EFO	SRS635729	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJKM-14A-01D A42342 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42342	SRX593560	"Specific Capture analysis of normal sample TARGET-20-PARJKM-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARJKM-14A-01D A42342 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42342_1_lane_dupsFlagged.bam	SRR1386021	@dbgap@:reads/SRP012000/SRS635729/SRX593560/SRR1386021/SRR1386021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJKM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJKM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARJKM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJKM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJKM-14A-01D	DNA	EFO	SRS635729	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJKM-14A-01D A42342 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42342	SRX593560	"Specific Capture analysis of normal sample TARGET-20-PARJKM-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARJKM-14A-01D A42342 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42342_1_lane_dupsFlagged.bam	SRR1386021	@dbgap@:reads/SRP012000/SRS635729/SRX593560/SRR1386021/SRR1386021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJKM-04A-01D_TARGET-20-PARJKM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJKM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJKM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJKM-14A-01D	DNA	EFO	SRS635729	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJKM-14A-01D A42342 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42342	SRX593560	"Specific Capture analysis of normal sample TARGET-20-PARJKM-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARJKM-14A-01D A42342 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42342_1_lane_dupsFlagged.bam	SRR1386021	@dbgap@:reads/SRP012000/SRS635729/SRX593560/SRR1386021/SRR1386021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJKM-04A-01D_TARGET-20-PARJKM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJKM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJKM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJKM-14A-01D	DNA	EFO	SRS635729	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJKM-14A-01D A42342 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42342	SRX593560	"Specific Capture analysis of normal sample TARGET-20-PARJKM-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARJKM-14A-01D A42342 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42342_1_lane_dupsFlagged.bam	SRR1386021	@dbgap@:reads/SRP012000/SRS635729/SRX593560/SRR1386021/SRR1386021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJKM-09A-01D_TARGET-20-PARJKM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJKM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJKM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJKM-14A-01D	DNA	EFO	SRS635729	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJKM-14A-01D A42342 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42342	SRX593560	"Specific Capture analysis of normal sample TARGET-20-PARJKM-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARJKM-14A-01D A42342 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42342_1_lane_dupsFlagged.bam	SRR1386021	@dbgap@:reads/SRP012000/SRS635729/SRX593560/SRR1386021/SRR1386021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJKM-09A-01D_TARGET-20-PARJKM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJLW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJLW-09A-01D	DNA	EFO	SRS633672	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJLW-09A-01D A33393 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33393	SRX587966	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJLW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARJLW-09A-01D A33393 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33393_1_lane_dupsFlagged.bam	SRR1373848	@dbgap@:reads/SRP012000/SRS633672/SRX587966/SRR1373848/SRR1373848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJLW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJLW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARJLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJLW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJLW-09A-01D	DNA	EFO	SRS633672	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJLW-09A-01D A33393 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33393	SRX587966	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJLW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARJLW-09A-01D A33393 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33393_1_lane_dupsFlagged.bam	SRR1373848	@dbgap@:reads/SRP012000/SRS633672/SRX587966/SRR1373848/SRR1373848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJLW-09A-01D_TARGET-20-PARJLW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJLW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJLW-09A-01D	DNA	EFO	SRS633672	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJLW-09A-01D A33393 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33393	SRX587966	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJLW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARJLW-09A-01D A33393 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33393_1_lane_dupsFlagged.bam	SRR1373848	@dbgap@:reads/SRP012000/SRS633672/SRX587966/SRR1373848/SRR1373848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJLW-09A-01D_TARGET-20-PARJLW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJLW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJLW-14A-01D	DNA	EFO	SRS635701	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJLW-14A-01D A41666 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41666	SRX593526	"Specific Capture analysis of normal sample TARGET-20-PARJLW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARJLW-14A-01D A41666 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41666_1_lane_dupsFlagged.bam	SRR1385983	@dbgap@:reads/SRP012000/SRS635701/SRX593526/SRR1385983/SRR1385983.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJLW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJLW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARJLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJLW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJLW-14A-01D	DNA	EFO	SRS635701	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJLW-14A-01D A41666 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41666	SRX593526	"Specific Capture analysis of normal sample TARGET-20-PARJLW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARJLW-14A-01D A41666 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41666_1_lane_dupsFlagged.bam	SRR1385983	@dbgap@:reads/SRP012000/SRS635701/SRX593526/SRR1385983/SRR1385983.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJLW-09A-01D_TARGET-20-PARJLW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJLW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJLW-14A-01D	DNA	EFO	SRS635701	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJLW-14A-01D A41666 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41666	SRX593526	"Specific Capture analysis of normal sample TARGET-20-PARJLW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARJLW-14A-01D A41666 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41666_1_lane_dupsFlagged.bam	SRR1385983	@dbgap@:reads/SRP012000/SRS635701/SRX593526/SRR1385983/SRR1385983.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJLW-09A-01D_TARGET-20-PARJLW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJRG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJRG-04A-01D	DNA	EFO	SRS637515	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJRG-04A-01D A42748 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42748	SRX597951	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJRG-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARJRG-04A-01D A42748 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42748_1_lane_dupsFlagged.bam	SRR1395272	@dbgap@:reads/SRP012000/SRS637515/SRX597951/SRR1395272/SRR1395272.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJRG-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJRG-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARJRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJRG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJRG-04A-01D	DNA	EFO	SRS637515	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJRG-04A-01D A42748 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42748	SRX597951	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJRG-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARJRG-04A-01D A42748 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42748_1_lane_dupsFlagged.bam	SRR1395272	@dbgap@:reads/SRP012000/SRS637515/SRX597951/SRR1395272/SRR1395272.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJRG-04A-01D_TARGET-20-PARJRG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJRG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJRG-04A-01D	DNA	EFO	SRS637515	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJRG-04A-01D A42748 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42748	SRX597951	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJRG-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARJRG-04A-01D A42748 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42748_1_lane_dupsFlagged.bam	SRR1395272	@dbgap@:reads/SRP012000/SRS637515/SRX597951/SRR1395272/SRR1395272.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJRG-04A-01D_TARGET-20-PARJRG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJRG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJRG-09A-01D	DNA	EFO	SRS633691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJRG-09A-01D A33369 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33369	SRX587986	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJRG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARJRG-09A-01D A33369 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33369_1_lane_dupsFlagged.bam	SRR1373841	@dbgap@:reads/SRP012000/SRS633691/SRX587986/SRR1373841/SRR1373841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJRG-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJRG-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARJRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJRG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJRG-09A-01D	DNA	EFO	SRS633691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJRG-09A-01D A33369 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33369	SRX587986	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJRG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARJRG-09A-01D A33369 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33369_1_lane_dupsFlagged.bam	SRR1373841	@dbgap@:reads/SRP012000/SRS633691/SRX587986/SRR1373841/SRR1373841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJRG-09A-01D_TARGET-20-PARJRG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJRG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJRG-09A-01D	DNA	EFO	SRS633691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJRG-09A-01D A33369 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33369	SRX587986	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJRG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARJRG-09A-01D A33369 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33369_1_lane_dupsFlagged.bam	SRR1373841	@dbgap@:reads/SRP012000/SRS633691/SRX587986/SRR1373841/SRR1373841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJRG-09A-01D_TARGET-20-PARJRG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJRG-14A-01D	DNA	EFO	SRS635761	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJRG-14A-01D A42314 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42314	SRX593597	"Specific Capture analysis of normal sample TARGET-20-PARJRG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARJRG-14A-01D A42314 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42314_1_lane_dupsFlagged.bam	SRR1386069	@dbgap@:reads/SRP012000/SRS635761/SRX593597/SRR1386069/SRR1386069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJRG-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJRG-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARJRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJRG-14A-01D	DNA	EFO	SRS635761	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJRG-14A-01D A42314 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42314	SRX593597	"Specific Capture analysis of normal sample TARGET-20-PARJRG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARJRG-14A-01D A42314 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42314_1_lane_dupsFlagged.bam	SRR1386069	@dbgap@:reads/SRP012000/SRS635761/SRX593597/SRR1386069/SRR1386069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJRG-04A-01D_TARGET-20-PARJRG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJRG-14A-01D	DNA	EFO	SRS635761	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJRG-14A-01D A42314 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42314	SRX593597	"Specific Capture analysis of normal sample TARGET-20-PARJRG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARJRG-14A-01D A42314 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42314_1_lane_dupsFlagged.bam	SRR1386069	@dbgap@:reads/SRP012000/SRS635761/SRX593597/SRR1386069/SRR1386069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJRG-04A-01D_TARGET-20-PARJRG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJRG-14A-01D	DNA	EFO	SRS635761	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJRG-14A-01D A42314 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42314	SRX593597	"Specific Capture analysis of normal sample TARGET-20-PARJRG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARJRG-14A-01D A42314 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42314_1_lane_dupsFlagged.bam	SRR1386069	@dbgap@:reads/SRP012000/SRS635761/SRX593597/SRR1386069/SRR1386069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJRG-09A-01D_TARGET-20-PARJRG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJRG-14A-01D	DNA	EFO	SRS635761	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJRG-14A-01D A42314 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42314	SRX593597	"Specific Capture analysis of normal sample TARGET-20-PARJRG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARJRG-14A-01D A42314 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42314_1_lane_dupsFlagged.bam	SRR1386069	@dbgap@:reads/SRP012000/SRS635761/SRX593597/SRR1386069/SRR1386069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJRG-09A-01D_TARGET-20-PARJRG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJUJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJUJ-09A-01D	DNA	EFO	SRS635617	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJUJ-09A-01D A41927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41927	SRX593436	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJUJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARJUJ-09A-01D A41927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41927_1_lane_dupsFlagged.bam	SRR1385901	@dbgap@:reads/SRP012000/SRS635617/SRX593436/SRR1385901/SRR1385901.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJUJ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJUJ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARJUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJUJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJUJ-09A-01D	DNA	EFO	SRS635617	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJUJ-09A-01D A41927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41927	SRX593436	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJUJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARJUJ-09A-01D A41927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41927_1_lane_dupsFlagged.bam	SRR1385901	@dbgap@:reads/SRP012000/SRS635617/SRX593436/SRR1385901/SRR1385901.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJUJ-09A-01D_TARGET-20-PARJUJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJUJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJUJ-09A-01D	DNA	EFO	SRS635617	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJUJ-09A-01D A41927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41927	SRX593436	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJUJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARJUJ-09A-01D A41927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41927_1_lane_dupsFlagged.bam	SRR1385901	@dbgap@:reads/SRP012000/SRS635617/SRX593436/SRR1385901/SRR1385901.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJUJ-09A-01D_TARGET-20-PARJUJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJUJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJUJ-14A-01D	DNA	EFO	SRS637407	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJUJ-14A-01D A42788 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42788	SRX597813	"Specific Capture analysis of normal sample TARGET-20-PARJUJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARJUJ-14A-01D A42788 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42788_1_lane_dupsFlagged.bam	SRR1395124	@dbgap@:reads/SRP012000/SRS637407/SRX597813/SRR1395124/SRR1395124.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJUJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJUJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARJUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJUJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJUJ-14A-01D	DNA	EFO	SRS637407	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJUJ-14A-01D A42788 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42788	SRX597813	"Specific Capture analysis of normal sample TARGET-20-PARJUJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARJUJ-14A-01D A42788 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42788_1_lane_dupsFlagged.bam	SRR1395124	@dbgap@:reads/SRP012000/SRS637407/SRX597813/SRR1395124/SRR1395124.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJUJ-09A-01D_TARGET-20-PARJUJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJUJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJUJ-14A-01D	DNA	EFO	SRS637407	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJUJ-14A-01D A42788 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42788	SRX597813	"Specific Capture analysis of normal sample TARGET-20-PARJUJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARJUJ-14A-01D A42788 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42788_1_lane_dupsFlagged.bam	SRR1395124	@dbgap@:reads/SRP012000/SRS637407/SRX597813/SRR1395124/SRR1395124.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJUJ-09A-01D_TARGET-20-PARJUJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJVU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJVU-03A-01D	DNA	EFO	SRS635468	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJVU-03A-01D A41757 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41757	SRX593190	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJVU-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARJVU-03A-01D A41757 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41757_1_lane_dupsFlagged.bam	SRR1385617	@dbgap@:reads/SRP012000/SRS635468/SRX593190/SRR1385617/SRR1385617.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJVU-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJVU-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARJVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJVU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJVU-03A-01D	DNA	EFO	SRS635468	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJVU-03A-01D A41757 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41757	SRX593190	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJVU-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARJVU-03A-01D A41757 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41757_1_lane_dupsFlagged.bam	SRR1385617	@dbgap@:reads/SRP012000/SRS635468/SRX593190/SRR1385617/SRR1385617.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJVU-03A-01D_TARGET-20-PARJVU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJVU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJVU-03A-01D	DNA	EFO	SRS635468	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJVU-03A-01D A41757 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41757	SRX593190	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJVU-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARJVU-03A-01D A41757 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41757_1_lane_dupsFlagged.bam	SRR1385617	@dbgap@:reads/SRP012000/SRS635468/SRX593190/SRR1385617/SRR1385617.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJVU-03A-01D_TARGET-20-PARJVU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJVU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJVU-14A-01D	DNA	EFO	SRS634696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJVU-14A-01D A41539 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41539	SRX590797	"Specific Capture analysis of normal sample TARGET-20-PARJVU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARJVU-14A-01D A41539 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41539_1_lane_dupsFlagged.bam	SRR1379863	@dbgap@:reads/SRP012000/SRS634696/SRX590797/SRR1379863/SRR1379863.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJVU-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJVU-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARJVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJVU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJVU-14A-01D	DNA	EFO	SRS634696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJVU-14A-01D A41539 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41539	SRX590797	"Specific Capture analysis of normal sample TARGET-20-PARJVU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARJVU-14A-01D A41539 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41539_1_lane_dupsFlagged.bam	SRR1379863	@dbgap@:reads/SRP012000/SRS634696/SRX590797/SRR1379863/SRR1379863.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJVU-03A-01D_TARGET-20-PARJVU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARJVU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJVU-14A-01D	DNA	EFO	SRS634696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJVU-14A-01D A41539 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41539	SRX590797	"Specific Capture analysis of normal sample TARGET-20-PARJVU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARJVU-14A-01D A41539 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41539_1_lane_dupsFlagged.bam	SRR1379863	@dbgap@:reads/SRP012000/SRS634696/SRX590797/SRR1379863/SRR1379863.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJVU-03A-01D_TARGET-20-PARJVU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJWH-04A-01D	DNA	EFO	SRS637321	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJWH-04A-01D A42225 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42225	SRX597694	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJWH-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARJWH-04A-01D A42225 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42225_1_lane_dupsFlagged.bam	SRR1394969	@dbgap@:reads/SRP012000/SRS637321/SRX597694/SRR1394969/SRR1394969.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJWH-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJWH-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARJWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJWH-04A-01D	DNA	EFO	SRS637321	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJWH-04A-01D A42225 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42225	SRX597694	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJWH-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARJWH-04A-01D A42225 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42225_1_lane_dupsFlagged.bam	SRR1394969	@dbgap@:reads/SRP012000/SRS637321/SRX597694/SRR1394969/SRR1394969.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJWH-04A-01D_TARGET-20-PARJWH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJWH-04A-01D	DNA	EFO	SRS637321	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJWH-04A-01D A42225 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42225	SRX597694	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJWH-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARJWH-04A-01D A42225 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42225_1_lane_dupsFlagged.bam	SRR1394969	@dbgap@:reads/SRP012000/SRS637321/SRX597694/SRR1394969/SRR1394969.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJWH-04A-01D_TARGET-20-PARJWH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJWH-09A-01D	DNA	EFO	SRS628324	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJWH-09A-01D A31225 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31225	SRX573398	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJWH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARJWH-09A-01D A31225 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31225_1_lane_dupsFlagged.bam	SRR1342685	@dbgap@:reads/SRP012000/SRS628324/SRX573398/SRR1342685/SRR1342685.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJWH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJWH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARJWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJWH-09A-01D	DNA	EFO	SRS628324	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJWH-09A-01D A31225 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31225	SRX573398	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJWH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARJWH-09A-01D A31225 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31225_1_lane_dupsFlagged.bam	SRR1342685	@dbgap@:reads/SRP012000/SRS628324/SRX573398/SRR1342685/SRR1342685.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJWH-09A-01D_TARGET-20-PARJWH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJWH-09A-01D	DNA	EFO	SRS628324	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJWH-09A-01D A31225 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31225	SRX573398	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJWH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARJWH-09A-01D A31225 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31225_1_lane_dupsFlagged.bam	SRR1342685	@dbgap@:reads/SRP012000/SRS628324/SRX573398/SRR1342685/SRR1342685.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJWH-09A-01D_TARGET-20-PARJWH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJWH-14A-01D	DNA	EFO	SRS637441	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJWH-14A-01D A42923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42923	SRX597853	"Specific Capture analysis of normal sample TARGET-20-PARJWH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARJWH-14A-01D A42923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42923_1_lane_dupsFlagged.bam	SRR1395192	@dbgap@:reads/SRP012000/SRS637441/SRX597853/SRR1395192/SRR1395192.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJWH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJWH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARJWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJWH-14A-01D	DNA	EFO	SRS637441	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJWH-14A-01D A42923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42923	SRX597853	"Specific Capture analysis of normal sample TARGET-20-PARJWH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARJWH-14A-01D A42923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42923_1_lane_dupsFlagged.bam	SRR1395192	@dbgap@:reads/SRP012000/SRS637441/SRX597853/SRR1395192/SRR1395192.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJWH-04A-01D_TARGET-20-PARJWH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJWH-14A-01D	DNA	EFO	SRS637441	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJWH-14A-01D A42923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42923	SRX597853	"Specific Capture analysis of normal sample TARGET-20-PARJWH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARJWH-14A-01D A42923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42923_1_lane_dupsFlagged.bam	SRR1395192	@dbgap@:reads/SRP012000/SRS637441/SRX597853/SRR1395192/SRR1395192.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJWH-04A-01D_TARGET-20-PARJWH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJWH-14A-01D	DNA	EFO	SRS637441	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJWH-14A-01D A42923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42923	SRX597853	"Specific Capture analysis of normal sample TARGET-20-PARJWH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARJWH-14A-01D A42923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42923_1_lane_dupsFlagged.bam	SRR1395192	@dbgap@:reads/SRP012000/SRS637441/SRX597853/SRR1395192/SRR1395192.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJWH-09A-01D_TARGET-20-PARJWH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJWH-14A-01D	DNA	EFO	SRS637441	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJWH-14A-01D A42923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42923	SRX597853	"Specific Capture analysis of normal sample TARGET-20-PARJWH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARJWH-14A-01D A42923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42923_1_lane_dupsFlagged.bam	SRR1395192	@dbgap@:reads/SRP012000/SRS637441/SRX597853/SRR1395192/SRR1395192.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJWH-09A-01D_TARGET-20-PARJWH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01D	DNA	EFO	SRS489671	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJYP-03A-01D A31247 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31247	SRX573388	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJYP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARJYP-03A-01D A31247 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31247_1_lane_dupsFlagged.bam	SRR1342661	@dbgap@:reads/SRP012000/SRS489671/SRX573388/SRR1342661/SRR1342661.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJYP-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJYP-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01D	DNA	EFO	SRS489671	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJYP-03A-01D A31247 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31247	SRX573388	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJYP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARJYP-03A-01D A31247 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31247_1_lane_dupsFlagged.bam	SRR1342661	@dbgap@:reads/SRP012000/SRS489671/SRX573388/SRR1342661/SRR1342661.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJYP-03A-01D_TARGET-20-PARJYP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01D	DNA	EFO	SRS489671	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJYP-03A-01D A31247 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31247	SRX573388	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARJYP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARJYP-03A-01D A31247 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31247_1_lane_dupsFlagged.bam	SRR1342661	@dbgap@:reads/SRP012000/SRS489671/SRX573388/SRR1342661/SRR1342661.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJYP-03A-01D_TARGET-20-PARJYP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-14A-01D	DNA	EFO	SRS637446	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJYP-14A-01D A42905 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42905	SRX597863	"Specific Capture analysis of normal sample TARGET-20-PARJYP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARJYP-14A-01D A42905 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42905_1_lane_dupsFlagged.bam	SRR1395150	@dbgap@:reads/SRP012000/SRS637446/SRX597863/SRR1395150/SRR1395150.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARJYP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARJYP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-14A-01D	DNA	EFO	SRS637446	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJYP-14A-01D A42905 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42905	SRX597863	"Specific Capture analysis of normal sample TARGET-20-PARJYP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARJYP-14A-01D A42905 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42905_1_lane_dupsFlagged.bam	SRR1395150	@dbgap@:reads/SRP012000/SRS637446/SRX597863/SRR1395150/SRR1395150.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJYP-03A-01D_TARGET-20-PARJYP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-14A-01D	DNA	EFO	SRS637446	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJYP-14A-01D A42905 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42905	SRX597863	"Specific Capture analysis of normal sample TARGET-20-PARJYP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARJYP-14A-01D A42905 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42905_1_lane_dupsFlagged.bam	SRR1395150	@dbgap@:reads/SRP012000/SRS637446/SRX597863/SRR1395150/SRR1395150.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARJYP-03A-01D_TARGET-20-PARJYP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-03D	DNA	EFO	SRS628725	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKCX-09A-03D A32199 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32199	SRX574420	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKCX-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARKCX-09A-03D A32199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32199_1_lane_dupsFlagged.bam	SRR1344923	@dbgap@:reads/SRP012000/SRS628725/SRX574420/SRR1344923/SRR1344923.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARKCX-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARKCX-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-03D	DNA	EFO	SRS628725	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKCX-09A-03D A32199 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32199	SRX574420	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKCX-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARKCX-09A-03D A32199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32199_1_lane_dupsFlagged.bam	SRR1344923	@dbgap@:reads/SRP012000/SRS628725/SRX574420/SRR1344923/SRR1344923.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKCX-09A-03D_TARGET-20-PARKCX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-03D	DNA	EFO	SRS628725	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKCX-09A-03D A32199 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32199	SRX574420	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKCX-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARKCX-09A-03D A32199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32199_1_lane_dupsFlagged.bam	SRR1344923	@dbgap@:reads/SRP012000/SRS628725/SRX574420/SRR1344923/SRR1344923.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKCX-09A-03D_TARGET-20-PARKCX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-14A-01D	DNA	EFO	SRS301095	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKCX-14A-01D A42343 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42343	SRX593546	"Specific Capture analysis of normal sample TARGET-20-PARKCX-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARKCX-14A-01D A42343 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42343_1_lane_dupsFlagged.bam	SRR1386032	@dbgap@:reads/SRP012000/SRS301095/SRX593546/SRR1386032/SRR1386032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARKCX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARKCX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-14A-01D	DNA	EFO	SRS301095	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKCX-14A-01D A42343 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42343	SRX593546	"Specific Capture analysis of normal sample TARGET-20-PARKCX-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARKCX-14A-01D A42343 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42343_1_lane_dupsFlagged.bam	SRR1386032	@dbgap@:reads/SRP012000/SRS301095/SRX593546/SRR1386032/SRR1386032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKCX-09A-03D_TARGET-20-PARKCX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-14A-01D	DNA	EFO	SRS301095	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKCX-14A-01D A42343 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42343	SRX593546	"Specific Capture analysis of normal sample TARGET-20-PARKCX-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARKCX-14A-01D A42343 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42343_1_lane_dupsFlagged.bam	SRR1386032	@dbgap@:reads/SRP012000/SRS301095/SRX593546/SRR1386032/SRR1386032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKCX-09A-03D_TARGET-20-PARKCX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARKFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKFB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKFB-03A-01D	DNA	EFO	SRS628322	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKFB-03A-01D A31248 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31248	SRX573397	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKFB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARKFB-03A-01D A31248 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31248_1_lane_dupsFlagged.bam	SRR1342693	@dbgap@:reads/SRP012000/SRS628322/SRX573397/SRR1342693/SRR1342693.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARKFB-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARKFB-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARKFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKFB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKFB-03A-01D	DNA	EFO	SRS628322	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKFB-03A-01D A31248 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31248	SRX573397	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKFB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARKFB-03A-01D A31248 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31248_1_lane_dupsFlagged.bam	SRR1342693	@dbgap@:reads/SRP012000/SRS628322/SRX573397/SRR1342693/SRR1342693.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKFB-03A-01D_TARGET-20-PARKFB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARKFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKFB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKFB-03A-01D	DNA	EFO	SRS628322	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKFB-03A-01D A31248 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31248	SRX573397	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKFB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARKFB-03A-01D A31248 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31248_1_lane_dupsFlagged.bam	SRR1342693	@dbgap@:reads/SRP012000/SRS628322/SRX573397/SRR1342693/SRR1342693.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKFB-03A-01D_TARGET-20-PARKFB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARKFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKFB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKFB-14A-01D	DNA	EFO	SRS635776	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKFB-14A-01D A42286 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42286	SRX593615	"Specific Capture analysis of normal sample TARGET-20-PARKFB-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARKFB-14A-01D A42286 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42286_1_lane_dupsFlagged.bam	SRR1386039	@dbgap@:reads/SRP012000/SRS635776/SRX593615/SRR1386039/SRR1386039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARKFB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARKFB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARKFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKFB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKFB-14A-01D	DNA	EFO	SRS635776	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKFB-14A-01D A42286 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42286	SRX593615	"Specific Capture analysis of normal sample TARGET-20-PARKFB-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARKFB-14A-01D A42286 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42286_1_lane_dupsFlagged.bam	SRR1386039	@dbgap@:reads/SRP012000/SRS635776/SRX593615/SRR1386039/SRR1386039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKFB-03A-01D_TARGET-20-PARKFB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARKFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKFB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKFB-14A-01D	DNA	EFO	SRS635776	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKFB-14A-01D A42286 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42286	SRX593615	"Specific Capture analysis of normal sample TARGET-20-PARKFB-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARKFB-14A-01D A42286 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42286_1_lane_dupsFlagged.bam	SRR1386039	@dbgap@:reads/SRP012000/SRS635776/SRX593615/SRR1386039/SRR1386039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKFB-03A-01D_TARGET-20-PARKFB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARKGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKGB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKGB-03A-01D	DNA	EFO	SRS635445	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKGB-03A-01D A41759 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41759	SRX593167	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKGB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARKGB-03A-01D A41759 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41759_1_lane_dupsFlagged.bam	SRR1385618	@dbgap@:reads/SRP012000/SRS635445/SRX593167/SRR1385618/SRR1385618.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARKGB-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARKGB-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARKGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKGB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKGB-03A-01D	DNA	EFO	SRS635445	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKGB-03A-01D A41759 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41759	SRX593167	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKGB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARKGB-03A-01D A41759 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41759_1_lane_dupsFlagged.bam	SRR1385618	@dbgap@:reads/SRP012000/SRS635445/SRX593167/SRR1385618/SRR1385618.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKGB-03A-01D_TARGET-20-PARKGB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARKGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKGB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKGB-03A-01D	DNA	EFO	SRS635445	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKGB-03A-01D A41759 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41759	SRX593167	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKGB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARKGB-03A-01D A41759 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41759_1_lane_dupsFlagged.bam	SRR1385618	@dbgap@:reads/SRP012000/SRS635445/SRX593167/SRR1385618/SRR1385618.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKGB-03A-01D_TARGET-20-PARKGB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARKGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKGB-14A-01D	DNA	EFO	SRS637369	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKGB-14A-01D A42839 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42839	SRX597775	"Specific Capture analysis of normal sample TARGET-20-PARKGB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARKGB-14A-01D A42839 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42839_1_lane_dupsFlagged.bam	SRR1395070	@dbgap@:reads/SRP012000/SRS637369/SRX597775/SRR1395070/SRR1395070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARKGB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARKGB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARKGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKGB-14A-01D	DNA	EFO	SRS637369	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKGB-14A-01D A42839 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42839	SRX597775	"Specific Capture analysis of normal sample TARGET-20-PARKGB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARKGB-14A-01D A42839 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42839_1_lane_dupsFlagged.bam	SRR1395070	@dbgap@:reads/SRP012000/SRS637369/SRX597775/SRR1395070/SRR1395070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKGB-03A-01D_TARGET-20-PARKGB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARKGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKGB-14A-01D	DNA	EFO	SRS637369	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKGB-14A-01D A42839 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42839	SRX597775	"Specific Capture analysis of normal sample TARGET-20-PARKGB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARKGB-14A-01D A42839 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42839_1_lane_dupsFlagged.bam	SRR1395070	@dbgap@:reads/SRP012000/SRS637369/SRX597775/SRR1395070/SRR1395070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKGB-03A-01D_TARGET-20-PARKGB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARKHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKHV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKHV-09A-01D	DNA	EFO	SRS635440	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKHV-09A-01D A41758 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41758	SRX593162	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKHV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARKHV-09A-01D A41758 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41758_1_lane_dupsFlagged.bam	SRR1385626	@dbgap@:reads/SRP012000/SRS635440/SRX593162/SRR1385626/SRR1385626.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARKHV-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARKHV-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARKHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKHV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKHV-09A-01D	DNA	EFO	SRS635440	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKHV-09A-01D A41758 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41758	SRX593162	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKHV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARKHV-09A-01D A41758 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41758_1_lane_dupsFlagged.bam	SRR1385626	@dbgap@:reads/SRP012000/SRS635440/SRX593162/SRR1385626/SRR1385626.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKHV-09A-01D_TARGET-20-PARKHV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARKHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKHV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKHV-09A-01D	DNA	EFO	SRS635440	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKHV-09A-01D A41758 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41758	SRX593162	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKHV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARKHV-09A-01D A41758 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41758_1_lane_dupsFlagged.bam	SRR1385626	@dbgap@:reads/SRP012000/SRS635440/SRX593162/SRR1385626/SRR1385626.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKHV-09A-01D_TARGET-20-PARKHV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARKHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKHV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKHV-14A-01D	DNA	EFO	SRS637504	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKHV-14A-01D A42913 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42913	SRX597937	"Specific Capture analysis of normal sample TARGET-20-PARKHV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARKHV-14A-01D A42913 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42913_1_lane_dupsFlagged.bam	SRR1395194	@dbgap@:reads/SRP012000/SRS637504/SRX597937/SRR1395194/SRR1395194.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARKHV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARKHV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARKHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKHV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKHV-14A-01D	DNA	EFO	SRS637504	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKHV-14A-01D A42913 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42913	SRX597937	"Specific Capture analysis of normal sample TARGET-20-PARKHV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARKHV-14A-01D A42913 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42913_1_lane_dupsFlagged.bam	SRR1395194	@dbgap@:reads/SRP012000/SRS637504/SRX597937/SRR1395194/SRR1395194.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKHV-09A-01D_TARGET-20-PARKHV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARKHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKHV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKHV-14A-01D	DNA	EFO	SRS637504	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKHV-14A-01D A42913 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42913	SRX597937	"Specific Capture analysis of normal sample TARGET-20-PARKHV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARKHV-14A-01D A42913 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42913_1_lane_dupsFlagged.bam	SRR1395194	@dbgap@:reads/SRP012000/SRS637504/SRX597937/SRR1395194/SRR1395194.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKHV-09A-01D_TARGET-20-PARKHV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARKJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKJZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKJZ-03A-01D	DNA	EFO	SRS633675	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKJZ-03A-01D A33394 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33394	SRX587969	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKJZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARKJZ-03A-01D A33394 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33394_1_lane_dupsFlagged.bam	SRR1373771	@dbgap@:reads/SRP012000/SRS633675/SRX587969/SRR1373771/SRR1373771.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARKJZ-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARKJZ-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARKJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKJZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKJZ-03A-01D	DNA	EFO	SRS633675	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKJZ-03A-01D A33394 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33394	SRX587969	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKJZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARKJZ-03A-01D A33394 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33394_1_lane_dupsFlagged.bam	SRR1373771	@dbgap@:reads/SRP012000/SRS633675/SRX587969/SRR1373771/SRR1373771.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKJZ-03A-01D_TARGET-20-PARKJZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARKJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKJZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKJZ-03A-01D	DNA	EFO	SRS633675	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKJZ-03A-01D A33394 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33394	SRX587969	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKJZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARKJZ-03A-01D A33394 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33394_1_lane_dupsFlagged.bam	SRR1373771	@dbgap@:reads/SRP012000/SRS633675/SRX587969/SRR1373771/SRR1373771.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKJZ-03A-01D_TARGET-20-PARKJZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARKJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKJZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKJZ-04A-01D	DNA	EFO	SRS637336	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKJZ-04A-01D A42201 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42201	SRX597725	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKJZ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARKJZ-04A-01D A42201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42201_1_lane_dupsFlagged.bam	SRR1394991	@dbgap@:reads/SRP012000/SRS637336/SRX597725/SRR1394991/SRR1394991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARKJZ-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARKJZ-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARKJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKJZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKJZ-04A-01D	DNA	EFO	SRS637336	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKJZ-04A-01D A42201 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42201	SRX597725	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKJZ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARKJZ-04A-01D A42201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42201_1_lane_dupsFlagged.bam	SRR1394991	@dbgap@:reads/SRP012000/SRS637336/SRX597725/SRR1394991/SRR1394991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKJZ-04A-01D_TARGET-20-PARKJZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARKJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKJZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKJZ-04A-01D	DNA	EFO	SRS637336	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKJZ-04A-01D A42201 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42201	SRX597725	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKJZ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARKJZ-04A-01D A42201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42201_1_lane_dupsFlagged.bam	SRR1394991	@dbgap@:reads/SRP012000/SRS637336/SRX597725/SRR1394991/SRR1394991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKJZ-04A-01D_TARGET-20-PARKJZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARKJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKJZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKJZ-14A-01D	DNA	EFO	SRS637479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKJZ-14A-01D A42924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42924	SRX597909	"Specific Capture analysis of normal sample TARGET-20-PARKJZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARKJZ-14A-01D A42924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42924_1_lane_dupsFlagged.bam	SRR1395207	@dbgap@:reads/SRP012000/SRS637479/SRX597909/SRR1395207/SRR1395207.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARKJZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARKJZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARKJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKJZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKJZ-14A-01D	DNA	EFO	SRS637479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKJZ-14A-01D A42924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42924	SRX597909	"Specific Capture analysis of normal sample TARGET-20-PARKJZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARKJZ-14A-01D A42924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42924_1_lane_dupsFlagged.bam	SRR1395207	@dbgap@:reads/SRP012000/SRS637479/SRX597909/SRR1395207/SRR1395207.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKJZ-03A-01D_TARGET-20-PARKJZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARKJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKJZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKJZ-14A-01D	DNA	EFO	SRS637479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKJZ-14A-01D A42924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42924	SRX597909	"Specific Capture analysis of normal sample TARGET-20-PARKJZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARKJZ-14A-01D A42924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42924_1_lane_dupsFlagged.bam	SRR1395207	@dbgap@:reads/SRP012000/SRS637479/SRX597909/SRR1395207/SRR1395207.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKJZ-03A-01D_TARGET-20-PARKJZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARKJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKJZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKJZ-14A-01D	DNA	EFO	SRS637479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKJZ-14A-01D A42924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42924	SRX597909	"Specific Capture analysis of normal sample TARGET-20-PARKJZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARKJZ-14A-01D A42924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42924_1_lane_dupsFlagged.bam	SRR1395207	@dbgap@:reads/SRP012000/SRS637479/SRX597909/SRR1395207/SRR1395207.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKJZ-04A-01D_TARGET-20-PARKJZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARKJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKJZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKJZ-14A-01D	DNA	EFO	SRS637479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKJZ-14A-01D A42924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42924	SRX597909	"Specific Capture analysis of normal sample TARGET-20-PARKJZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARKJZ-14A-01D A42924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42924_1_lane_dupsFlagged.bam	SRR1395207	@dbgap@:reads/SRP012000/SRS637479/SRX597909/SRR1395207/SRR1395207.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKJZ-04A-01D_TARGET-20-PARKJZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARKLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKLC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKLC-03A-01D	DNA	EFO	SRS628290	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKLC-03A-01D A31215 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31215	SRX573349	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKLC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARKLC-03A-01D A31215 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31215_1_lane_dupsFlagged.bam	SRR1342642	@dbgap@:reads/SRP012000/SRS628290/SRX573349/SRR1342642/SRR1342642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARKLC-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARKLC-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARKLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKLC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKLC-03A-01D	DNA	EFO	SRS628290	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKLC-03A-01D A31215 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31215	SRX573349	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKLC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARKLC-03A-01D A31215 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31215_1_lane_dupsFlagged.bam	SRR1342642	@dbgap@:reads/SRP012000/SRS628290/SRX573349/SRR1342642/SRR1342642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKLC-03A-01D_TARGET-20-PARKLC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARKLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKLC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKLC-03A-01D	DNA	EFO	SRS628290	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKLC-03A-01D A31215 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31215	SRX573349	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKLC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARKLC-03A-01D A31215 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31215_1_lane_dupsFlagged.bam	SRR1342642	@dbgap@:reads/SRP012000/SRS628290/SRX573349/SRR1342642/SRR1342642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKLC-03A-01D_TARGET-20-PARKLC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARKLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKLC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKLC-14A-01D	DNA	EFO	SRS635751	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKLC-14A-01D A42307 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42307	SRX593584	"Specific Capture analysis of normal sample TARGET-20-PARKLC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARKLC-14A-01D A42307 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42307_1_lane_dupsFlagged.bam	SRR1386064	@dbgap@:reads/SRP012000/SRS635751/SRX593584/SRR1386064/SRR1386064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARKLC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARKLC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARKLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKLC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKLC-14A-01D	DNA	EFO	SRS635751	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKLC-14A-01D A42307 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42307	SRX593584	"Specific Capture analysis of normal sample TARGET-20-PARKLC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARKLC-14A-01D A42307 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42307_1_lane_dupsFlagged.bam	SRR1386064	@dbgap@:reads/SRP012000/SRS635751/SRX593584/SRR1386064/SRR1386064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKLC-03A-01D_TARGET-20-PARKLC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARKLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKLC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKLC-14A-01D	DNA	EFO	SRS635751	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKLC-14A-01D A42307 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42307	SRX593584	"Specific Capture analysis of normal sample TARGET-20-PARKLC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARKLC-14A-01D A42307 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42307_1_lane_dupsFlagged.bam	SRR1386064	@dbgap@:reads/SRP012000/SRS635751/SRX593584/SRR1386064/SRR1386064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARKLC-03A-01D_TARGET-20-PARKLC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARKSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARKSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKSY-09A-01D	DNA	EFO	SRS635503	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKSY-09A-01D A41779 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41779	SRX593224	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARKSY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARKSY-09A-01D A41779 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41779_1_lane_dupsFlagged.bam	SRR1385642	@dbgap@:reads/SRP012000/SRS635503/SRX593224/SRR1385642/SRR1385642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARKSY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARKSY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARLFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLFE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLFE-03A-01D	DNA	EFO	SRS628712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLFE-03A-01D A32200 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32200	SRX574405	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLFE-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARLFE-03A-01D A32200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32200_1_lane_dupsFlagged.bam	SRR1344875	@dbgap@:reads/SRP012000/SRS628712/SRX574405/SRR1344875/SRR1344875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARLFE-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARLFE-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARLFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLFE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLFE-03A-01D	DNA	EFO	SRS628712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLFE-03A-01D A32200 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32200	SRX574405	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLFE-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARLFE-03A-01D A32200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32200_1_lane_dupsFlagged.bam	SRR1344875	@dbgap@:reads/SRP012000/SRS628712/SRX574405/SRR1344875/SRR1344875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLFE-03A-01D_TARGET-20-PARLFE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLFE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLFE-03A-01D	DNA	EFO	SRS628712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLFE-03A-01D A32200 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32200	SRX574405	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLFE-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARLFE-03A-01D A32200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32200_1_lane_dupsFlagged.bam	SRR1344875	@dbgap@:reads/SRP012000/SRS628712/SRX574405/SRR1344875/SRR1344875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLFE-03A-01D_TARGET-20-PARLFE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARLFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLFE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLFE-14A-01D	DNA	EFO	SRS637478	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLFE-14A-01D A42911 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42911	SRX597904	"Specific Capture analysis of normal sample TARGET-20-PARLFE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARLFE-14A-01D A42911 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42911_1_lane_dupsFlagged.bam	SRR1395217	@dbgap@:reads/SRP012000/SRS637478/SRX597904/SRR1395217/SRR1395217.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARLFE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARLFE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARLFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLFE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLFE-14A-01D	DNA	EFO	SRS637478	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLFE-14A-01D A42911 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42911	SRX597904	"Specific Capture analysis of normal sample TARGET-20-PARLFE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARLFE-14A-01D A42911 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42911_1_lane_dupsFlagged.bam	SRR1395217	@dbgap@:reads/SRP012000/SRS637478/SRX597904/SRR1395217/SRR1395217.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLFE-03A-01D_TARGET-20-PARLFE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLFE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLFE-14A-01D	DNA	EFO	SRS637478	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLFE-14A-01D A42911 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42911	SRX597904	"Specific Capture analysis of normal sample TARGET-20-PARLFE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARLFE-14A-01D A42911 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42911_1_lane_dupsFlagged.bam	SRR1395217	@dbgap@:reads/SRP012000/SRS637478/SRX597904/SRR1395217/SRR1395217.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLFE-03A-01D_TARGET-20-PARLFE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARLGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLGT-09A-01D	DNA	EFO	SRS635453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLGT-09A-01D A41780 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41780	SRX593175	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLGT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARLGT-09A-01D A41780 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41780_1_lane_dupsFlagged.bam	SRR1385656	@dbgap@:reads/SRP012000/SRS635453/SRX593175/SRR1385656/SRR1385656.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARLGT-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARLGT-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARLGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLGT-09A-01D	DNA	EFO	SRS635453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLGT-09A-01D A41780 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41780	SRX593175	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLGT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARLGT-09A-01D A41780 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41780_1_lane_dupsFlagged.bam	SRR1385656	@dbgap@:reads/SRP012000/SRS635453/SRX593175/SRR1385656/SRR1385656.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLGT-09A-01D_TARGET-20-PARLGT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLGT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLGT-09A-01D	DNA	EFO	SRS635453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLGT-09A-01D A41780 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41780	SRX593175	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLGT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARLGT-09A-01D A41780 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41780_1_lane_dupsFlagged.bam	SRR1385656	@dbgap@:reads/SRP012000/SRS635453/SRX593175/SRR1385656/SRR1385656.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLGT-09A-01D_TARGET-20-PARLGT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARLGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLGT-14A-01D	DNA	EFO	SRS637462	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLGT-14A-01D A42910 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42910	SRX597880	"Specific Capture analysis of normal sample TARGET-20-PARLGT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARLGT-14A-01D A42910 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42910_1_lane_dupsFlagged.bam	SRR1395147	@dbgap@:reads/SRP012000/SRS637462/SRX597880/SRR1395147/SRR1395147.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARLGT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARLGT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARLGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLGT-14A-01D	DNA	EFO	SRS637462	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLGT-14A-01D A42910 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42910	SRX597880	"Specific Capture analysis of normal sample TARGET-20-PARLGT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARLGT-14A-01D A42910 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42910_1_lane_dupsFlagged.bam	SRR1395147	@dbgap@:reads/SRP012000/SRS637462/SRX597880/SRR1395147/SRR1395147.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLGT-09A-01D_TARGET-20-PARLGT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLGT-14A-01D	DNA	EFO	SRS637462	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLGT-14A-01D A42910 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42910	SRX597880	"Specific Capture analysis of normal sample TARGET-20-PARLGT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARLGT-14A-01D A42910 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42910_1_lane_dupsFlagged.bam	SRR1395147	@dbgap@:reads/SRP012000/SRS637462/SRX597880/SRR1395147/SRR1395147.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLGT-09A-01D_TARGET-20-PARLGT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARLHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLHW-09A-01D	DNA	EFO	SRS635458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLHW-09A-01D A41781 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41781	SRX593180	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLHW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARLHW-09A-01D A41781 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41781_1_lane_dupsFlagged.bam	SRR1385632	@dbgap@:reads/SRP012000/SRS635458/SRX593180/SRR1385632/SRR1385632.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARLHW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARLHW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARLHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLHW-09A-01D	DNA	EFO	SRS635458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLHW-09A-01D A41781 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41781	SRX593180	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLHW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARLHW-09A-01D A41781 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41781_1_lane_dupsFlagged.bam	SRR1385632	@dbgap@:reads/SRP012000/SRS635458/SRX593180/SRR1385632/SRR1385632.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLHW-09A-01D_TARGET-20-PARLHW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLHW-09A-01D	DNA	EFO	SRS635458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLHW-09A-01D A41781 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41781	SRX593180	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLHW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARLHW-09A-01D A41781 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41781_1_lane_dupsFlagged.bam	SRR1385632	@dbgap@:reads/SRP012000/SRS635458/SRX593180/SRR1385632/SRR1385632.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLHW-09A-01D_TARGET-20-PARLHW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARLHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLHW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLHW-14A-01D	DNA	EFO	SRS637461	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLHW-14A-01D A42912 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42912	SRX597879	"Specific Capture analysis of normal sample TARGET-20-PARLHW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARLHW-14A-01D A42912 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42912_1_lane_dupsFlagged.bam	SRR1395196	@dbgap@:reads/SRP012000/SRS637461/SRX597879/SRR1395196/SRR1395196.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARLHW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARLHW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARLHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLHW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLHW-14A-01D	DNA	EFO	SRS637461	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLHW-14A-01D A42912 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42912	SRX597879	"Specific Capture analysis of normal sample TARGET-20-PARLHW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARLHW-14A-01D A42912 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42912_1_lane_dupsFlagged.bam	SRR1395196	@dbgap@:reads/SRP012000/SRS637461/SRX597879/SRR1395196/SRR1395196.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLHW-09A-01D_TARGET-20-PARLHW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLHW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLHW-14A-01D	DNA	EFO	SRS637461	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLHW-14A-01D A42912 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42912	SRX597879	"Specific Capture analysis of normal sample TARGET-20-PARLHW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARLHW-14A-01D A42912 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42912_1_lane_dupsFlagged.bam	SRR1395196	@dbgap@:reads/SRP012000/SRS637461/SRX597879/SRR1395196/SRR1395196.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLHW-09A-01D_TARGET-20-PARLHW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARLMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLMY-09A-01D	DNA	EFO	SRS628722	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLMY-09A-01D A32201 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32201	SRX574417	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLMY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARLMY-09A-01D A32201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32201_1_lane_dupsFlagged.bam	SRR1344881	@dbgap@:reads/SRP012000/SRS628722/SRX574417/SRR1344881/SRR1344881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARLMY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARLMY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARLMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLMY-09A-01D	DNA	EFO	SRS628722	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLMY-09A-01D A32201 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32201	SRX574417	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLMY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARLMY-09A-01D A32201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32201_1_lane_dupsFlagged.bam	SRR1344881	@dbgap@:reads/SRP012000/SRS628722/SRX574417/SRR1344881/SRR1344881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLMY-09A-01D_TARGET-20-PARLMY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLMY-09A-01D	DNA	EFO	SRS628722	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLMY-09A-01D A32201 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32201	SRX574417	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLMY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARLMY-09A-01D A32201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32201_1_lane_dupsFlagged.bam	SRR1344881	@dbgap@:reads/SRP012000/SRS628722/SRX574417/SRR1344881/SRR1344881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLMY-09A-01D_TARGET-20-PARLMY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARLMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLMY-10A-01D	DNA	EFO	SRS635936	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLMY-10A-01D A42516 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42516	SRX593897	"Specific Capture analysis of normal sample TARGET-20-PARLMY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARLMY-10A-01D A42516 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42516_1_lane_dupsFlagged.bam	SRR1386364	@dbgap@:reads/SRP012000/SRS635936/SRX593897/SRR1386364/SRR1386364.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARLMY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARLMY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARLMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLMY-10A-01D	DNA	EFO	SRS635936	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLMY-10A-01D A42516 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42516	SRX593897	"Specific Capture analysis of normal sample TARGET-20-PARLMY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARLMY-10A-01D A42516 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42516_1_lane_dupsFlagged.bam	SRR1386364	@dbgap@:reads/SRP012000/SRS635936/SRX593897/SRR1386364/SRR1386364.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLMY-09A-01D_TARGET-20-PARLMY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLMY-10A-01D	DNA	EFO	SRS635936	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLMY-10A-01D A42516 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42516	SRX593897	"Specific Capture analysis of normal sample TARGET-20-PARLMY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARLMY-10A-01D A42516 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42516_1_lane_dupsFlagged.bam	SRR1386364	@dbgap@:reads/SRP012000/SRS635936/SRX593897/SRR1386364/SRR1386364.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLMY-09A-01D_TARGET-20-PARLMY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLSL-09A-02D	DNA	EFO	SRS628333	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLSL-09A-02D A31208 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31208	SRX573414	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLSL-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARLSL-09A-02D A31208 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31208_1_lane_dupsFlagged.bam	SRR1342648	@dbgap@:reads/SRP012000/SRS628333/SRX573414/SRR1342648/SRR1342648.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARLSL-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARLSL-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLSL-09A-02D	DNA	EFO	SRS628333	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLSL-09A-02D A31208 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31208	SRX573414	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLSL-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARLSL-09A-02D A31208 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31208_1_lane_dupsFlagged.bam	SRR1342648	@dbgap@:reads/SRP012000/SRS628333/SRX573414/SRR1342648/SRR1342648.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLSL-09A-02D_TARGET-20-PARLSL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLSL-09A-02D	DNA	EFO	SRS628333	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLSL-09A-02D A31208 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31208	SRX573414	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLSL-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARLSL-09A-02D A31208 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31208_1_lane_dupsFlagged.bam	SRR1342648	@dbgap@:reads/SRP012000/SRS628333/SRX573414/SRR1342648/SRR1342648.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLSL-09A-02D_TARGET-20-PARLSL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLSL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLSL-14A-01D	DNA	EFO	SRS635726	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLSL-14A-01D A42290 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42290	SRX593555	"Specific Capture analysis of normal sample TARGET-20-PARLSL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARLSL-14A-01D A42290 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42290_1_lane_dupsFlagged.bam	SRR1386076	@dbgap@:reads/SRP012000/SRS635726/SRX593555/SRR1386076/SRR1386076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARLSL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARLSL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLSL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLSL-14A-01D	DNA	EFO	SRS635726	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLSL-14A-01D A42290 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42290	SRX593555	"Specific Capture analysis of normal sample TARGET-20-PARLSL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARLSL-14A-01D A42290 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42290_1_lane_dupsFlagged.bam	SRR1386076	@dbgap@:reads/SRP012000/SRS635726/SRX593555/SRR1386076/SRR1386076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLSL-09A-02D_TARGET-20-PARLSL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLSL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLSL-14A-01D	DNA	EFO	SRS635726	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLSL-14A-01D A42290 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42290	SRX593555	"Specific Capture analysis of normal sample TARGET-20-PARLSL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARLSL-14A-01D A42290 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42290_1_lane_dupsFlagged.bam	SRR1386076	@dbgap@:reads/SRP012000/SRS635726/SRX593555/SRR1386076/SRR1386076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLSL-09A-02D_TARGET-20-PARLSL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARLSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLSW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLSW-09A-02D	DNA	EFO	SRS628937	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLSW-09A-02D A32325 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32325	SRX574992	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLSW-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARLSW-09A-02D A32325 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32325_1_lane_dupsFlagged.bam	SRR1346154	@dbgap@:reads/SRP012000/SRS628937/SRX574992/SRR1346154/SRR1346154.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARLSW-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARLSW-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARLSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLSW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLSW-09A-02D	DNA	EFO	SRS628937	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLSW-09A-02D A32325 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32325	SRX574992	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLSW-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARLSW-09A-02D A32325 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32325_1_lane_dupsFlagged.bam	SRR1346154	@dbgap@:reads/SRP012000/SRS628937/SRX574992/SRR1346154/SRR1346154.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLSW-09A-02D_TARGET-20-PARLSW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLSW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLSW-09A-02D	DNA	EFO	SRS628937	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLSW-09A-02D A32325 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32325	SRX574992	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLSW-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARLSW-09A-02D A32325 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32325_1_lane_dupsFlagged.bam	SRR1346154	@dbgap@:reads/SRP012000/SRS628937/SRX574992/SRR1346154/SRR1346154.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLSW-09A-02D_TARGET-20-PARLSW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARLSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLSW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLSW-14A-01D	DNA	EFO	SRS635917	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLSW-14A-01D A42540 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42540	SRX593877	"Specific Capture analysis of normal sample TARGET-20-PARLSW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARLSW-14A-01D A42540 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42540_1_lane_dupsFlagged.bam	SRR1386407	@dbgap@:reads/SRP012000/SRS635917/SRX593877/SRR1386407/SRR1386407.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARLSW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARLSW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARLSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLSW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLSW-14A-01D	DNA	EFO	SRS635917	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLSW-14A-01D A42540 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42540	SRX593877	"Specific Capture analysis of normal sample TARGET-20-PARLSW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARLSW-14A-01D A42540 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42540_1_lane_dupsFlagged.bam	SRR1386407	@dbgap@:reads/SRP012000/SRS635917/SRX593877/SRR1386407/SRR1386407.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLSW-09A-02D_TARGET-20-PARLSW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLSW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLSW-14A-01D	DNA	EFO	SRS635917	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLSW-14A-01D A42540 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42540	SRX593877	"Specific Capture analysis of normal sample TARGET-20-PARLSW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARLSW-14A-01D A42540 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42540_1_lane_dupsFlagged.bam	SRR1386407	@dbgap@:reads/SRP012000/SRS635917/SRX593877/SRR1386407/SRR1386407.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLSW-09A-02D_TARGET-20-PARLSW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARLUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLUS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLUS-03A-01D	DNA	EFO	SRS635459	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLUS-03A-01D A41782 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41782	SRX593181	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLUS-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARLUS-03A-01D A41782 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41782_1_lane_dupsFlagged.bam	SRR1385662	@dbgap@:reads/SRP012000/SRS635459/SRX593181/SRR1385662/SRR1385662.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARLUS-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARLUS-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARLUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLUS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLUS-03A-01D	DNA	EFO	SRS635459	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLUS-03A-01D A41782 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41782	SRX593181	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLUS-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARLUS-03A-01D A41782 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41782_1_lane_dupsFlagged.bam	SRR1385662	@dbgap@:reads/SRP012000/SRS635459/SRX593181/SRR1385662/SRR1385662.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLUS-03A-01D_TARGET-20-PARLUS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLUS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLUS-03A-01D	DNA	EFO	SRS635459	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLUS-03A-01D A41782 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41782	SRX593181	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLUS-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARLUS-03A-01D A41782 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41782_1_lane_dupsFlagged.bam	SRR1385662	@dbgap@:reads/SRP012000/SRS635459/SRX593181/SRR1385662/SRR1385662.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLUS-03A-01D_TARGET-20-PARLUS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARLUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLUS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLUS-14A-01D	DNA	EFO	SRS634732	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLUS-14A-01D A41537 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41537	SRX590842	"Specific Capture analysis of normal sample TARGET-20-PARLUS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARLUS-14A-01D A41537 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41537_1_lane_dupsFlagged.bam	SRR1379816	@dbgap@:reads/SRP012000/SRS634732/SRX590842/SRR1379816/SRR1379816.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARLUS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARLUS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARLUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLUS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLUS-14A-01D	DNA	EFO	SRS634732	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLUS-14A-01D A41537 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41537	SRX590842	"Specific Capture analysis of normal sample TARGET-20-PARLUS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARLUS-14A-01D A41537 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41537_1_lane_dupsFlagged.bam	SRR1379816	@dbgap@:reads/SRP012000/SRS634732/SRX590842/SRR1379816/SRR1379816.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLUS-03A-01D_TARGET-20-PARLUS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLUS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLUS-14A-01D	DNA	EFO	SRS634732	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLUS-14A-01D A41537 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41537	SRX590842	"Specific Capture analysis of normal sample TARGET-20-PARLUS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARLUS-14A-01D A41537 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41537_1_lane_dupsFlagged.bam	SRR1379816	@dbgap@:reads/SRP012000/SRS634732/SRX590842/SRR1379816/SRR1379816.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLUS-03A-01D_TARGET-20-PARLUS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-01D	DNA	EFO	SRS489692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLVL-04A-01D A42246 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42246	SRX597760	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLVL-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARLVL-04A-01D A42246 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42246_1_lane_dupsFlagged.bam	SRR1394972	@dbgap@:reads/SRP012000/SRS489692/SRX597760/SRR1394972/SRR1394972.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARLVL-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARLVL-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-01D	DNA	EFO	SRS489692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLVL-04A-01D A42246 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42246	SRX597760	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLVL-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARLVL-04A-01D A42246 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42246_1_lane_dupsFlagged.bam	SRR1394972	@dbgap@:reads/SRP012000/SRS489692/SRX597760/SRR1394972/SRR1394972.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLVL-04A-01D_TARGET-20-PARLVL-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-01D	DNA	EFO	SRS489692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLVL-04A-01D A42246 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42246	SRX597760	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLVL-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARLVL-04A-01D A42246 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42246_1_lane_dupsFlagged.bam	SRR1394972	@dbgap@:reads/SRP012000/SRS489692/SRX597760/SRR1394972/SRR1394972.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLVL-04A-01D_TARGET-20-PARLVL-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01D	DNA	EFO	SRS628760	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLVL-09A-01D A32202 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32202	SRX574456	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLVL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARLVL-09A-01D A32202 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32202_1_lane_dupsFlagged.bam	SRR1344859	@dbgap@:reads/SRP012000/SRS628760/SRX574456/SRR1344859/SRR1344859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARLVL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARLVL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01D	DNA	EFO	SRS628760	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLVL-09A-01D A32202 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32202	SRX574456	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLVL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARLVL-09A-01D A32202 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32202_1_lane_dupsFlagged.bam	SRR1344859	@dbgap@:reads/SRP012000/SRS628760/SRX574456/SRR1344859/SRR1344859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLVL-09A-01D_TARGET-20-PARLVL-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01D	DNA	EFO	SRS628760	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLVL-09A-01D A32202 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32202	SRX574456	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLVL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARLVL-09A-01D A32202 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32202_1_lane_dupsFlagged.bam	SRR1344859	@dbgap@:reads/SRP012000/SRS628760/SRX574456/SRR1344859/SRR1344859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLVL-09A-01D_TARGET-20-PARLVL-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-03D	DNA	EFO	SRS635894	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLVL-14A-03D A42518 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42518	SRX593854	"Specific Capture analysis of normal sample TARGET-20-PARLVL-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARLVL-14A-03D A42518 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42518_1_lane_dupsFlagged.bam	SRR1386367	@dbgap@:reads/SRP012000/SRS635894/SRX593854/SRR1386367/SRR1386367.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARLVL-14A-03D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARLVL-14A-03D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-03D	DNA	EFO	SRS635894	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLVL-14A-03D A42518 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42518	SRX593854	"Specific Capture analysis of normal sample TARGET-20-PARLVL-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARLVL-14A-03D A42518 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42518_1_lane_dupsFlagged.bam	SRR1386367	@dbgap@:reads/SRP012000/SRS635894/SRX593854/SRR1386367/SRR1386367.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLVL-04A-01D_TARGET-20-PARLVL-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-03D	DNA	EFO	SRS635894	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLVL-14A-03D A42518 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42518	SRX593854	"Specific Capture analysis of normal sample TARGET-20-PARLVL-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARLVL-14A-03D A42518 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42518_1_lane_dupsFlagged.bam	SRR1386367	@dbgap@:reads/SRP012000/SRS635894/SRX593854/SRR1386367/SRR1386367.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLVL-04A-01D_TARGET-20-PARLVL-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-03D	DNA	EFO	SRS635894	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLVL-14A-03D A42518 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42518	SRX593854	"Specific Capture analysis of normal sample TARGET-20-PARLVL-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARLVL-14A-03D A42518 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42518_1_lane_dupsFlagged.bam	SRR1386367	@dbgap@:reads/SRP012000/SRS635894/SRX593854/SRR1386367/SRR1386367.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLVL-09A-01D_TARGET-20-PARLVL-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-14A-03D	DNA	EFO	SRS635894	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLVL-14A-03D A42518 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42518	SRX593854	"Specific Capture analysis of normal sample TARGET-20-PARLVL-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARLVL-14A-03D A42518 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42518_1_lane_dupsFlagged.bam	SRR1386367	@dbgap@:reads/SRP012000/SRS635894/SRX593854/SRR1386367/SRR1386367.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLVL-09A-01D_TARGET-20-PARLVL-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARLXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLXL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLXL-09A-01D	DNA	EFO	SRS628974	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLXL-09A-01D A32326 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32326	SRX575028	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLXL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARLXL-09A-01D A32326 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32326_1_lane_dupsFlagged.bam	SRR1346203	@dbgap@:reads/SRP012000/SRS628974/SRX575028/SRR1346203/SRR1346203.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARLXL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARLXL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARLXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLXL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLXL-09A-01D	DNA	EFO	SRS628974	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLXL-09A-01D A32326 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32326	SRX575028	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLXL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARLXL-09A-01D A32326 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32326_1_lane_dupsFlagged.bam	SRR1346203	@dbgap@:reads/SRP012000/SRS628974/SRX575028/SRR1346203/SRR1346203.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLXL-09A-01D_TARGET-20-PARLXL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLXL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLXL-09A-01D	DNA	EFO	SRS628974	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLXL-09A-01D A32326 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32326	SRX575028	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARLXL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARLXL-09A-01D A32326 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32326_1_lane_dupsFlagged.bam	SRR1346203	@dbgap@:reads/SRP012000/SRS628974/SRX575028/SRR1346203/SRR1346203.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLXL-09A-01D_TARGET-20-PARLXL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARLXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLXL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLXL-14A-01D	DNA	EFO	SRS637418	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLXL-14A-01D A42838 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42838	SRX597827	"Specific Capture analysis of normal sample TARGET-20-PARLXL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARLXL-14A-01D A42838 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42838_1_lane_dupsFlagged.bam	SRR1395114	@dbgap@:reads/SRP012000/SRS637418/SRX597827/SRR1395114/SRR1395114.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARLXL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARLXL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARLXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLXL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLXL-14A-01D	DNA	EFO	SRS637418	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLXL-14A-01D A42838 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42838	SRX597827	"Specific Capture analysis of normal sample TARGET-20-PARLXL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARLXL-14A-01D A42838 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42838_1_lane_dupsFlagged.bam	SRR1395114	@dbgap@:reads/SRP012000/SRS637418/SRX597827/SRR1395114/SRR1395114.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLXL-09A-01D_TARGET-20-PARLXL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARLXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARLXL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLXL-14A-01D	DNA	EFO	SRS637418	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLXL-14A-01D A42838 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42838	SRX597827	"Specific Capture analysis of normal sample TARGET-20-PARLXL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARLXL-14A-01D A42838 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42838_1_lane_dupsFlagged.bam	SRR1395114	@dbgap@:reads/SRP012000/SRS637418/SRX597827/SRR1395114/SRR1395114.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARLXL-09A-01D_TARGET-20-PARLXL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMGH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMGH-03A-01D	DNA	EFO	SRS635544	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMGH-03A-01D A41813 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41813	SRX593341	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMGH-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARMGH-03A-01D A41813 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41813_1_lane_dupsFlagged.bam	SRR1385837	@dbgap@:reads/SRP012000/SRS635544/SRX593341/SRR1385837/SRR1385837.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMGH-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMGH-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARMHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMHD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMHD-09A-01D	DNA	EFO	SRS628690	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMHD-09A-01D A32203 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32203	SRX574383	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMHD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARMHD-09A-01D A32203 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32203_1_lane_dupsFlagged.bam	SRR1344910	@dbgap@:reads/SRP012000/SRS628690/SRX574383/SRR1344910/SRR1344910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMHD-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMHD-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARMHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMHD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMHD-09A-01D	DNA	EFO	SRS628690	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMHD-09A-01D A32203 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32203	SRX574383	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMHD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARMHD-09A-01D A32203 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32203_1_lane_dupsFlagged.bam	SRR1344910	@dbgap@:reads/SRP012000/SRS628690/SRX574383/SRR1344910/SRR1344910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMHD-09A-01D_TARGET-20-PARMHD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMHD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMHD-09A-01D	DNA	EFO	SRS628690	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMHD-09A-01D A32203 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32203	SRX574383	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMHD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARMHD-09A-01D A32203 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32203_1_lane_dupsFlagged.bam	SRR1344910	@dbgap@:reads/SRP012000/SRS628690/SRX574383/SRR1344910/SRR1344910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMHD-09A-01D_TARGET-20-PARMHD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMHD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMHD-14A-01D	DNA	EFO	SRS635921	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMHD-14A-01D A42465 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42465	SRX593881	"Specific Capture analysis of normal sample TARGET-20-PARMHD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARMHD-14A-01D A42465 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42465_1_lane_dupsFlagged.bam	SRR1386357	@dbgap@:reads/SRP012000/SRS635921/SRX593881/SRR1386357/SRR1386357.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMHD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMHD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARMHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMHD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMHD-14A-01D	DNA	EFO	SRS635921	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMHD-14A-01D A42465 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42465	SRX593881	"Specific Capture analysis of normal sample TARGET-20-PARMHD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARMHD-14A-01D A42465 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42465_1_lane_dupsFlagged.bam	SRR1386357	@dbgap@:reads/SRP012000/SRS635921/SRX593881/SRR1386357/SRR1386357.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMHD-09A-01D_TARGET-20-PARMHD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMHD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMHD-14A-01D	DNA	EFO	SRS635921	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMHD-14A-01D A42465 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42465	SRX593881	"Specific Capture analysis of normal sample TARGET-20-PARMHD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARMHD-14A-01D A42465 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42465_1_lane_dupsFlagged.bam	SRR1386357	@dbgap@:reads/SRP012000/SRS635921/SRX593881/SRR1386357/SRR1386357.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMHD-09A-01D_TARGET-20-PARMHD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMIX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMIX-03A-01D	DNA	EFO	SRS628685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMIX-03A-01D A32204 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32204	SRX574378	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMIX-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARMIX-03A-01D A32204 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32204_1_lane_dupsFlagged.bam	SRR1344920	@dbgap@:reads/SRP012000/SRS628685/SRX574378/SRR1344920/SRR1344920.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMIX-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMIX-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARMIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMIX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMIX-03A-01D	DNA	EFO	SRS628685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMIX-03A-01D A32204 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32204	SRX574378	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMIX-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARMIX-03A-01D A32204 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32204_1_lane_dupsFlagged.bam	SRR1344920	@dbgap@:reads/SRP012000/SRS628685/SRX574378/SRR1344920/SRR1344920.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMIX-03A-01D_TARGET-20-PARMIX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMIX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMIX-03A-01D	DNA	EFO	SRS628685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMIX-03A-01D A32204 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32204	SRX574378	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMIX-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARMIX-03A-01D A32204 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32204_1_lane_dupsFlagged.bam	SRR1344920	@dbgap@:reads/SRP012000/SRS628685/SRX574378/SRR1344920/SRR1344920.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMIX-03A-01D_TARGET-20-PARMIX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMIX-14A-01D	DNA	EFO	SRS635975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMIX-14A-01D A42567 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42567	SRX593937	"Specific Capture analysis of normal sample TARGET-20-PARMIX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARMIX-14A-01D A42567 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42567_1_lane_dupsFlagged.bam	SRR1386476	@dbgap@:reads/SRP012000/SRS635975/SRX593937/SRR1386476/SRR1386476.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMIX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMIX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARMIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMIX-14A-01D	DNA	EFO	SRS635975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMIX-14A-01D A42567 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42567	SRX593937	"Specific Capture analysis of normal sample TARGET-20-PARMIX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARMIX-14A-01D A42567 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42567_1_lane_dupsFlagged.bam	SRR1386476	@dbgap@:reads/SRP012000/SRS635975/SRX593937/SRR1386476/SRR1386476.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMIX-03A-01D_TARGET-20-PARMIX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMIX-14A-01D	DNA	EFO	SRS635975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMIX-14A-01D A42567 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42567	SRX593937	"Specific Capture analysis of normal sample TARGET-20-PARMIX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARMIX-14A-01D A42567 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42567_1_lane_dupsFlagged.bam	SRR1386476	@dbgap@:reads/SRP012000/SRS635975/SRX593937/SRR1386476/SRR1386476.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMIX-03A-01D_TARGET-20-PARMIX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMIZ-09A-01D	DNA	EFO	SRS629106	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMIZ-09A-01D A33356 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33356	SRX575162	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMIZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARMIZ-09A-01D A33356 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33356_1_lane_dupsFlagged.bam	SRR1346476	@dbgap@:reads/SRP012000/SRS629106/SRX575162/SRR1346476/SRR1346476.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMIZ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMIZ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMIZ-09A-01D	DNA	EFO	SRS629106	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMIZ-09A-01D A33356 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33356	SRX575162	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMIZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARMIZ-09A-01D A33356 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33356_1_lane_dupsFlagged.bam	SRR1346476	@dbgap@:reads/SRP012000/SRS629106/SRX575162/SRR1346476/SRR1346476.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMIZ-09A-01D_TARGET-20-PARMIZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMIZ-09A-01D	DNA	EFO	SRS629106	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMIZ-09A-01D A33356 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33356	SRX575162	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMIZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARMIZ-09A-01D A33356 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33356_1_lane_dupsFlagged.bam	SRR1346476	@dbgap@:reads/SRP012000/SRS629106/SRX575162/SRR1346476/SRR1346476.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMIZ-09A-01D_TARGET-20-PARMIZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMIZ-14A-01D	DNA	EFO	SRS637404	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMIZ-14A-01D A42841 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42841	SRX597811	"Specific Capture analysis of normal sample TARGET-20-PARMIZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARMIZ-14A-01D A42841 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42841_1_lane_dupsFlagged.bam	SRR1395059	@dbgap@:reads/SRP012000/SRS637404/SRX597811/SRR1395059/SRR1395059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMIZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMIZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMIZ-14A-01D	DNA	EFO	SRS637404	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMIZ-14A-01D A42841 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42841	SRX597811	"Specific Capture analysis of normal sample TARGET-20-PARMIZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARMIZ-14A-01D A42841 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42841_1_lane_dupsFlagged.bam	SRR1395059	@dbgap@:reads/SRP012000/SRS637404/SRX597811/SRR1395059/SRR1395059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMIZ-09A-01D_TARGET-20-PARMIZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMIZ-14A-01D	DNA	EFO	SRS637404	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMIZ-14A-01D A42841 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42841	SRX597811	"Specific Capture analysis of normal sample TARGET-20-PARMIZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARMIZ-14A-01D A42841 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42841_1_lane_dupsFlagged.bam	SRR1395059	@dbgap@:reads/SRP012000/SRS637404/SRX597811/SRR1395059/SRR1395059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMIZ-09A-01D_TARGET-20-PARMIZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMLW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMLW-09A-01D	DNA	EFO	SRS635533	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMLW-09A-01D A41814 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41814	SRX593312	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMLW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARMLW-09A-01D A41814 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41814_1_lane_dupsFlagged.bam	SRR1385840	@dbgap@:reads/SRP012000/SRS635533/SRX593312/SRR1385840/SRR1385840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMLW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMLW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARMLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMLW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMLW-09A-01D	DNA	EFO	SRS635533	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMLW-09A-01D A41814 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41814	SRX593312	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMLW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARMLW-09A-01D A41814 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41814_1_lane_dupsFlagged.bam	SRR1385840	@dbgap@:reads/SRP012000/SRS635533/SRX593312/SRR1385840/SRR1385840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMLW-09A-01D_TARGET-20-PARMLW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMLW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMLW-09A-01D	DNA	EFO	SRS635533	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMLW-09A-01D A41814 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41814	SRX593312	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMLW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARMLW-09A-01D A41814 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41814_1_lane_dupsFlagged.bam	SRR1385840	@dbgap@:reads/SRP012000/SRS635533/SRX593312/SRR1385840/SRR1385840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMLW-09A-01D_TARGET-20-PARMLW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMLW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMLW-14A-01D	DNA	EFO	SRS635748	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMLW-14A-01D A42344 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42344	SRX593580	"Specific Capture analysis of normal sample TARGET-20-PARMLW-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARMLW-14A-01D A42344 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42344_1_lane_dupsFlagged.bam	SRR1386063	@dbgap@:reads/SRP012000/SRS635748/SRX593580/SRR1386063/SRR1386063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMLW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMLW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARMLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMLW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMLW-14A-01D	DNA	EFO	SRS635748	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMLW-14A-01D A42344 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42344	SRX593580	"Specific Capture analysis of normal sample TARGET-20-PARMLW-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARMLW-14A-01D A42344 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42344_1_lane_dupsFlagged.bam	SRR1386063	@dbgap@:reads/SRP012000/SRS635748/SRX593580/SRR1386063/SRR1386063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMLW-09A-01D_TARGET-20-PARMLW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMLW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMLW-14A-01D	DNA	EFO	SRS635748	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMLW-14A-01D A42344 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42344	SRX593580	"Specific Capture analysis of normal sample TARGET-20-PARMLW-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PARMLW-14A-01D A42344 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42344_1_lane_dupsFlagged.bam	SRR1386063	@dbgap@:reads/SRP012000/SRS635748/SRX593580/SRR1386063/SRR1386063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMLW-09A-01D_TARGET-20-PARMLW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMME-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMME-09A-01D	DNA	EFO	SRS628733	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMME-09A-01D A32205 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32205	SRX574428	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMME-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARMME-09A-01D A32205 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32205_1_lane_dupsFlagged.bam	SRR1344900	@dbgap@:reads/SRP012000/SRS628733/SRX574428/SRR1344900/SRR1344900.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMME-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMME-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARMME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMME-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMME-09A-01D	DNA	EFO	SRS628733	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMME-09A-01D A32205 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32205	SRX574428	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMME-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARMME-09A-01D A32205 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32205_1_lane_dupsFlagged.bam	SRR1344900	@dbgap@:reads/SRP012000/SRS628733/SRX574428/SRR1344900/SRR1344900.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMME-09A-01D_TARGET-20-PARMME-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMME-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMME-09A-01D	DNA	EFO	SRS628733	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMME-09A-01D A32205 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32205	SRX574428	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMME-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARMME-09A-01D A32205 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32205_1_lane_dupsFlagged.bam	SRR1344900	@dbgap@:reads/SRP012000/SRS628733/SRX574428/SRR1344900/SRR1344900.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMME-09A-01D_TARGET-20-PARMME-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMME-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMME-14A-01D	DNA	EFO	SRS635913	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMME-14A-01D A42546 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42546	SRX593873	"Specific Capture analysis of normal sample TARGET-20-PARMME-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARMME-14A-01D A42546 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42546_1_lane_dupsFlagged.bam	SRR1386328	@dbgap@:reads/SRP012000/SRS635913/SRX593873/SRR1386328/SRR1386328.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMME-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMME-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARMME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMME-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMME-14A-01D	DNA	EFO	SRS635913	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMME-14A-01D A42546 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42546	SRX593873	"Specific Capture analysis of normal sample TARGET-20-PARMME-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARMME-14A-01D A42546 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42546_1_lane_dupsFlagged.bam	SRR1386328	@dbgap@:reads/SRP012000/SRS635913/SRX593873/SRR1386328/SRR1386328.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMME-09A-01D_TARGET-20-PARMME-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMME-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMME-14A-01D	DNA	EFO	SRS635913	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMME-14A-01D A42546 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42546	SRX593873	"Specific Capture analysis of normal sample TARGET-20-PARMME-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARMME-14A-01D A42546 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42546_1_lane_dupsFlagged.bam	SRR1386328	@dbgap@:reads/SRP012000/SRS635913/SRX593873/SRR1386328/SRR1386328.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMME-09A-01D_TARGET-20-PARMME-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMMN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMMN-09A-02D	DNA	EFO	SRS628709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMMN-09A-02D A32206 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32206	SRX574402	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMMN-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARMMN-09A-02D A32206 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32206_1_lane_dupsFlagged.bam	SRR1344926	@dbgap@:reads/SRP012000/SRS628709/SRX574402/SRR1344926/SRR1344926.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMMN-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMMN-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARMMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMMN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMMN-09A-02D	DNA	EFO	SRS628709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMMN-09A-02D A32206 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32206	SRX574402	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMMN-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARMMN-09A-02D A32206 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32206_1_lane_dupsFlagged.bam	SRR1344926	@dbgap@:reads/SRP012000/SRS628709/SRX574402/SRR1344926/SRR1344926.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMMN-09A-02D_TARGET-20-PARMMN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMMN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMMN-09A-02D	DNA	EFO	SRS628709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMMN-09A-02D A32206 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32206	SRX574402	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMMN-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARMMN-09A-02D A32206 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32206_1_lane_dupsFlagged.bam	SRR1344926	@dbgap@:reads/SRP012000/SRS628709/SRX574402/SRR1344926/SRR1344926.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMMN-09A-02D_TARGET-20-PARMMN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMMN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMMN-14A-01D	DNA	EFO	SRS637367	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMMN-14A-01D A42843 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42843	SRX597770	"Specific Capture analysis of normal sample TARGET-20-PARMMN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARMMN-14A-01D A42843 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42843_1_lane_dupsFlagged.bam	SRR1395071	@dbgap@:reads/SRP012000/SRS637367/SRX597770/SRR1395071/SRR1395071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMMN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMMN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARMMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMMN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMMN-14A-01D	DNA	EFO	SRS637367	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMMN-14A-01D A42843 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42843	SRX597770	"Specific Capture analysis of normal sample TARGET-20-PARMMN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARMMN-14A-01D A42843 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42843_1_lane_dupsFlagged.bam	SRR1395071	@dbgap@:reads/SRP012000/SRS637367/SRX597770/SRR1395071/SRR1395071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMMN-09A-02D_TARGET-20-PARMMN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMMN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMMN-14A-01D	DNA	EFO	SRS637367	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMMN-14A-01D A42843 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42843	SRX597770	"Specific Capture analysis of normal sample TARGET-20-PARMMN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARMMN-14A-01D A42843 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42843_1_lane_dupsFlagged.bam	SRR1395071	@dbgap@:reads/SRP012000/SRS637367/SRX597770/SRR1395071/SRR1395071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMMN-09A-02D_TARGET-20-PARMMN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMMZ-03A-01D	DNA	EFO	SRS628900	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMMZ-03A-01D A32327 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32327	SRX574956	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMMZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARMMZ-03A-01D A32327 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32327_1_lane_dupsFlagged.bam	SRR1346182	@dbgap@:reads/SRP012000/SRS628900/SRX574956/SRR1346182/SRR1346182.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMMZ-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMMZ-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARMMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMMZ-03A-01D	DNA	EFO	SRS628900	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMMZ-03A-01D A32327 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32327	SRX574956	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMMZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARMMZ-03A-01D A32327 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32327_1_lane_dupsFlagged.bam	SRR1346182	@dbgap@:reads/SRP012000/SRS628900/SRX574956/SRR1346182/SRR1346182.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMMZ-03A-01D_TARGET-20-PARMMZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMMZ-03A-01D	DNA	EFO	SRS628900	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMMZ-03A-01D A32327 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32327	SRX574956	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMMZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARMMZ-03A-01D A32327 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32327_1_lane_dupsFlagged.bam	SRR1346182	@dbgap@:reads/SRP012000/SRS628900/SRX574956/SRR1346182/SRR1346182.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMMZ-03A-01D_TARGET-20-PARMMZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMMZ-14A-01D	DNA	EFO	SRS637381	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMMZ-14A-01D A42842 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42842	SRX597786	"Specific Capture analysis of normal sample TARGET-20-PARMMZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARMMZ-14A-01D A42842 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42842_1_lane_dupsFlagged.bam	SRR1395091	@dbgap@:reads/SRP012000/SRS637381/SRX597786/SRR1395091/SRR1395091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMMZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMMZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARMMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMMZ-14A-01D	DNA	EFO	SRS637381	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMMZ-14A-01D A42842 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42842	SRX597786	"Specific Capture analysis of normal sample TARGET-20-PARMMZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARMMZ-14A-01D A42842 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42842_1_lane_dupsFlagged.bam	SRR1395091	@dbgap@:reads/SRP012000/SRS637381/SRX597786/SRR1395091/SRR1395091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMMZ-03A-01D_TARGET-20-PARMMZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMMZ-14A-01D	DNA	EFO	SRS637381	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMMZ-14A-01D A42842 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42842	SRX597786	"Specific Capture analysis of normal sample TARGET-20-PARMMZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARMMZ-14A-01D A42842 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42842_1_lane_dupsFlagged.bam	SRR1395091	@dbgap@:reads/SRP012000/SRS637381/SRX597786/SRR1395091/SRR1395091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMMZ-03A-01D_TARGET-20-PARMMZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMPM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMPM-03A-01D	DNA	EFO	SRS628294	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMPM-03A-01D A31249 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31249	SRX573352	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMPM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARMPM-03A-01D A31249 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31249_1_lane_dupsFlagged.bam	SRR1342624	@dbgap@:reads/SRP012000/SRS628294/SRX573352/SRR1342624/SRR1342624.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMPM-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMPM-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARMPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMPM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMPM-03A-01D	DNA	EFO	SRS628294	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMPM-03A-01D A31249 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31249	SRX573352	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMPM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARMPM-03A-01D A31249 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31249_1_lane_dupsFlagged.bam	SRR1342624	@dbgap@:reads/SRP012000/SRS628294/SRX573352/SRR1342624/SRR1342624.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMPM-03A-01D_TARGET-20-PARMPM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMPM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMPM-03A-01D	DNA	EFO	SRS628294	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMPM-03A-01D A31249 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31249	SRX573352	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMPM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARMPM-03A-01D A31249 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31249_1_lane_dupsFlagged.bam	SRR1342624	@dbgap@:reads/SRP012000/SRS628294/SRX573352/SRR1342624/SRR1342624.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMPM-03A-01D_TARGET-20-PARMPM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMPM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMPM-14A-01D	DNA	EFO	SRS635749	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMPM-14A-01D A42308 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42308	SRX593582	"Specific Capture analysis of normal sample TARGET-20-PARMPM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARMPM-14A-01D A42308 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42308_1_lane_dupsFlagged.bam	SRR1386091	@dbgap@:reads/SRP012000/SRS635749/SRX593582/SRR1386091/SRR1386091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMPM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMPM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARMPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMPM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMPM-14A-01D	DNA	EFO	SRS635749	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMPM-14A-01D A42308 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42308	SRX593582	"Specific Capture analysis of normal sample TARGET-20-PARMPM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARMPM-14A-01D A42308 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42308_1_lane_dupsFlagged.bam	SRR1386091	@dbgap@:reads/SRP012000/SRS635749/SRX593582/SRR1386091/SRR1386091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMPM-03A-01D_TARGET-20-PARMPM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARMPM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMPM-14A-01D	DNA	EFO	SRS635749	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMPM-14A-01D A42308 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42308	SRX593582	"Specific Capture analysis of normal sample TARGET-20-PARMPM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARMPM-14A-01D A42308 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42308_1_lane_dupsFlagged.bam	SRR1386091	@dbgap@:reads/SRP012000/SRS635749/SRX593582/SRR1386091/SRR1386091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMPM-03A-01D_TARGET-20-PARMPM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZC-09A-02D	DNA	EFO	SRS628726	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZC-09A-02D A32207 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32207	SRX574421	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMZC-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARMZC-09A-02D A32207 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32207_1_lane_dupsFlagged.bam	SRR1344927	@dbgap@:reads/SRP012000/SRS628726/SRX574421/SRR1344927/SRR1344927.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMZC-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMZC-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARMZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZC-09A-02D	DNA	EFO	SRS628726	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZC-09A-02D A32207 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32207	SRX574421	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMZC-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARMZC-09A-02D A32207 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32207_1_lane_dupsFlagged.bam	SRR1344927	@dbgap@:reads/SRP012000/SRS628726/SRX574421/SRR1344927/SRR1344927.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMZC-09A-02D_TARGET-20-PARMZC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZC-09A-02D	DNA	EFO	SRS628726	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZC-09A-02D A32207 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32207	SRX574421	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMZC-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARMZC-09A-02D A32207 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32207_1_lane_dupsFlagged.bam	SRR1344927	@dbgap@:reads/SRP012000/SRS628726/SRX574421/SRR1344927/SRR1344927.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMZC-09A-02D_TARGET-20-PARMZC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZC-14A-01D	DNA	EFO	SRS635915	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZC-14A-01D A42466 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42466	SRX593875	"Specific Capture analysis of normal sample TARGET-20-PARMZC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARMZC-14A-01D A42466 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42466_1_lane_dupsFlagged.bam	SRR1386397	@dbgap@:reads/SRP012000/SRS635915/SRX593875/SRR1386397/SRR1386397.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMZC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMZC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARMZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZC-14A-01D	DNA	EFO	SRS635915	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZC-14A-01D A42466 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42466	SRX593875	"Specific Capture analysis of normal sample TARGET-20-PARMZC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARMZC-14A-01D A42466 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42466_1_lane_dupsFlagged.bam	SRR1386397	@dbgap@:reads/SRP012000/SRS635915/SRX593875/SRR1386397/SRR1386397.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMZC-09A-02D_TARGET-20-PARMZC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZC-14A-01D	DNA	EFO	SRS635915	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZC-14A-01D A42466 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42466	SRX593875	"Specific Capture analysis of normal sample TARGET-20-PARMZC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARMZC-14A-01D A42466 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42466_1_lane_dupsFlagged.bam	SRR1386397	@dbgap@:reads/SRP012000/SRS635915/SRX593875/SRR1386397/SRR1386397.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMZC-09A-02D_TARGET-20-PARMZC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02D	DNA	EFO	SRS301096	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZF-09A-02D A31234 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31234	SRX573359	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMZF-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARMZF-09A-02D A31234 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31234_1_lane_dupsFlagged.bam	SRR1342655	@dbgap@:reads/SRP012000/SRS301096/SRX573359/SRR1342655/SRR1342655.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMZF-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMZF-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02D	DNA	EFO	SRS301096	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZF-09A-02D A31234 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31234	SRX573359	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMZF-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARMZF-09A-02D A31234 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31234_1_lane_dupsFlagged.bam	SRR1342655	@dbgap@:reads/SRP012000/SRS301096/SRX573359/SRR1342655/SRR1342655.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMZF-09A-02D_TARGET-20-PARMZF-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02D	DNA	EFO	SRS301096	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZF-09A-02D A31234 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31234	SRX573359	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARMZF-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARMZF-09A-02D A31234 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31234_1_lane_dupsFlagged.bam	SRR1342655	@dbgap@:reads/SRP012000/SRS301096/SRX573359/SRR1342655/SRR1342655.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMZF-09A-02D_TARGET-20-PARMZF-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-02D	DNA	EFO	SRS637438	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZF-14A-02D A42789 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42789	SRX597850	"Specific Capture analysis of normal sample TARGET-20-PARMZF-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARMZF-14A-02D A42789 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42789_1_lane_dupsFlagged.bam	SRR1395132	@dbgap@:reads/SRP012000/SRS637438/SRX597850/SRR1395132/SRR1395132.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARMZF-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARMZF-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-02D	DNA	EFO	SRS637438	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZF-14A-02D A42789 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42789	SRX597850	"Specific Capture analysis of normal sample TARGET-20-PARMZF-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARMZF-14A-02D A42789 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42789_1_lane_dupsFlagged.bam	SRR1395132	@dbgap@:reads/SRP012000/SRS637438/SRX597850/SRR1395132/SRR1395132.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMZF-09A-02D_TARGET-20-PARMZF-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-14A-02D	DNA	EFO	SRS637438	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZF-14A-02D A42789 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42789	SRX597850	"Specific Capture analysis of normal sample TARGET-20-PARMZF-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARMZF-14A-02D A42789 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42789_1_lane_dupsFlagged.bam	SRR1395132	@dbgap@:reads/SRP012000/SRS637438/SRX597850/SRR1395132/SRR1395132.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARMZF-09A-02D_TARGET-20-PARMZF-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNAW-09A-01D	DNA	EFO	SRS628692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNAW-09A-01D A32208 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32208	SRX574385	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNAW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARNAW-09A-01D A32208 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32208_1_lane_dupsFlagged.bam	SRR1344844	@dbgap@:reads/SRP012000/SRS628692/SRX574385/SRR1344844/SRR1344844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNAW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNAW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNAW-09A-01D	DNA	EFO	SRS628692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNAW-09A-01D A32208 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32208	SRX574385	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNAW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARNAW-09A-01D A32208 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32208_1_lane_dupsFlagged.bam	SRR1344844	@dbgap@:reads/SRP012000/SRS628692/SRX574385/SRR1344844/SRR1344844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNAW-09A-01D_TARGET-20-PARNAW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNAW-09A-01D	DNA	EFO	SRS628692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNAW-09A-01D A32208 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32208	SRX574385	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNAW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARNAW-09A-01D A32208 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32208_1_lane_dupsFlagged.bam	SRR1344844	@dbgap@:reads/SRP012000/SRS628692/SRX574385/SRR1344844/SRR1344844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNAW-09A-01D_TARGET-20-PARNAW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNAW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNAW-10A-01D	DNA	EFO	SRS635734	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNAW-10A-01D A42291 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42291	SRX593565	"Specific Capture analysis of normal sample TARGET-20-PARNAW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARNAW-10A-01D A42291 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42291_1_lane_dupsFlagged.bam	SRR1386077	@dbgap@:reads/SRP012000/SRS635734/SRX593565/SRR1386077/SRR1386077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNAW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNAW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNAW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNAW-10A-01D	DNA	EFO	SRS635734	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNAW-10A-01D A42291 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42291	SRX593565	"Specific Capture analysis of normal sample TARGET-20-PARNAW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARNAW-10A-01D A42291 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42291_1_lane_dupsFlagged.bam	SRR1386077	@dbgap@:reads/SRP012000/SRS635734/SRX593565/SRR1386077/SRR1386077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNAW-09A-01D_TARGET-20-PARNAW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNAW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNAW-10A-01D	DNA	EFO	SRS635734	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNAW-10A-01D A42291 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42291	SRX593565	"Specific Capture analysis of normal sample TARGET-20-PARNAW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARNAW-10A-01D A42291 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42291_1_lane_dupsFlagged.bam	SRR1386077	@dbgap@:reads/SRP012000/SRS635734/SRX593565/SRR1386077/SRR1386077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNAW-09A-01D_TARGET-20-PARNAW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNFR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNFR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNFR-03A-01D	DNA	EFO	SRS628316	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNFR-03A-01D A31235 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31235	SRX573387	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNFR-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARNFR-03A-01D A31235 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31235_1_lane_dupsFlagged.bam	SRR1342681	@dbgap@:reads/SRP012000/SRS628316/SRX573387/SRR1342681/SRR1342681.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNFR-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNFR-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARNFR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNFR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNFR-03A-01D	DNA	EFO	SRS628316	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNFR-03A-01D A31235 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31235	SRX573387	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNFR-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARNFR-03A-01D A31235 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31235_1_lane_dupsFlagged.bam	SRR1342681	@dbgap@:reads/SRP012000/SRS628316/SRX573387/SRR1342681/SRR1342681.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNFR-03A-01D_TARGET-20-PARNFR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNFR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNFR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNFR-03A-01D	DNA	EFO	SRS628316	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNFR-03A-01D A31235 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31235	SRX573387	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNFR-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARNFR-03A-01D A31235 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31235_1_lane_dupsFlagged.bam	SRR1342681	@dbgap@:reads/SRP012000/SRS628316/SRX573387/SRR1342681/SRR1342681.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNFR-03A-01D_TARGET-20-PARNFR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNFR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNFR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNFR-14A-01D	DNA	EFO	SRS637375	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNFR-14A-01D A42790 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42790	SRX597781	"Specific Capture analysis of normal sample TARGET-20-PARNFR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARNFR-14A-01D A42790 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42790_1_lane_dupsFlagged.bam	SRR1395099	@dbgap@:reads/SRP012000/SRS637375/SRX597781/SRR1395099/SRR1395099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNFR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNFR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARNFR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNFR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNFR-14A-01D	DNA	EFO	SRS637375	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNFR-14A-01D A42790 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42790	SRX597781	"Specific Capture analysis of normal sample TARGET-20-PARNFR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARNFR-14A-01D A42790 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42790_1_lane_dupsFlagged.bam	SRR1395099	@dbgap@:reads/SRP012000/SRS637375/SRX597781/SRR1395099/SRR1395099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNFR-03A-01D_TARGET-20-PARNFR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNFR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNFR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNFR-14A-01D	DNA	EFO	SRS637375	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNFR-14A-01D A42790 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42790	SRX597781	"Specific Capture analysis of normal sample TARGET-20-PARNFR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARNFR-14A-01D A42790 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42790_1_lane_dupsFlagged.bam	SRR1395099	@dbgap@:reads/SRP012000/SRS637375/SRX597781/SRR1395099/SRR1395099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNFR-03A-01D_TARGET-20-PARNFR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNFZ-09A-01D	DNA	EFO	SRS635570	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNFZ-09A-01D A41931 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41931	SRX593389	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNFZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARNFZ-09A-01D A41931 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41931_1_lane_dupsFlagged.bam	SRR1385873	@dbgap@:reads/SRP012000/SRS635570/SRX593389/SRR1385873/SRR1385873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNFZ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNFZ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-04A-02D	DNA	EFO	SRS637526	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIA-04A-02D A42741 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42741	SRX597964	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNIA-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARNIA-04A-02D A42741 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42741_1_lane_dupsFlagged.bam	SRR1395289	@dbgap@:reads/SRP012000/SRS637526/SRX597964/SRR1395289/SRR1395289.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNIA-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNIA-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-04A-02D	DNA	EFO	SRS637526	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIA-04A-02D A42741 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42741	SRX597964	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNIA-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARNIA-04A-02D A42741 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42741_1_lane_dupsFlagged.bam	SRR1395289	@dbgap@:reads/SRP012000/SRS637526/SRX597964/SRR1395289/SRR1395289.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNIA-04A-02D_TARGET-20-PARNIA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-04A-02D	DNA	EFO	SRS637526	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIA-04A-02D A42741 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42741	SRX597964	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNIA-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARNIA-04A-02D A42741 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42741_1_lane_dupsFlagged.bam	SRR1395289	@dbgap@:reads/SRP012000/SRS637526/SRX597964/SRR1395289/SRR1395289.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNIA-04A-02D_TARGET-20-PARNIA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-09A-01D	DNA	EFO	SRS628314	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIA-09A-01D A31202 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31202	SRX573382	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNIA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARNIA-09A-01D A31202 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31202_1_lane_dupsFlagged.bam	SRR1342634	@dbgap@:reads/SRP012000/SRS628314/SRX573382/SRR1342634/SRR1342634.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNIA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNIA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-09A-01D	DNA	EFO	SRS628314	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIA-09A-01D A31202 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31202	SRX573382	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNIA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARNIA-09A-01D A31202 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31202_1_lane_dupsFlagged.bam	SRR1342634	@dbgap@:reads/SRP012000/SRS628314/SRX573382/SRR1342634/SRR1342634.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNIA-09A-01D_TARGET-20-PARNIA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-09A-01D	DNA	EFO	SRS628314	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIA-09A-01D A31202 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31202	SRX573382	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNIA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARNIA-09A-01D A31202 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31202_1_lane_dupsFlagged.bam	SRR1342634	@dbgap@:reads/SRP012000/SRS628314/SRX573382/SRR1342634/SRR1342634.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNIA-09A-01D_TARGET-20-PARNIA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-01D	DNA	EFO	SRS635747	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIA-14A-01D A42345 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42345	SRX593579	"Specific Capture analysis of normal sample TARGET-20-PARNIA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARNIA-14A-01D A42345 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42345_1_lane_dupsFlagged.bam	SRR1386046	@dbgap@:reads/SRP012000/SRS635747/SRX593579/SRR1386046/SRR1386046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNIA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNIA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-01D	DNA	EFO	SRS635747	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIA-14A-01D A42345 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42345	SRX593579	"Specific Capture analysis of normal sample TARGET-20-PARNIA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARNIA-14A-01D A42345 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42345_1_lane_dupsFlagged.bam	SRR1386046	@dbgap@:reads/SRP012000/SRS635747/SRX593579/SRR1386046/SRR1386046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNIA-04A-02D_TARGET-20-PARNIA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-01D	DNA	EFO	SRS635747	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIA-14A-01D A42345 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42345	SRX593579	"Specific Capture analysis of normal sample TARGET-20-PARNIA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARNIA-14A-01D A42345 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42345_1_lane_dupsFlagged.bam	SRR1386046	@dbgap@:reads/SRP012000/SRS635747/SRX593579/SRR1386046/SRR1386046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNIA-04A-02D_TARGET-20-PARNIA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-01D	DNA	EFO	SRS635747	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIA-14A-01D A42345 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42345	SRX593579	"Specific Capture analysis of normal sample TARGET-20-PARNIA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARNIA-14A-01D A42345 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42345_1_lane_dupsFlagged.bam	SRR1386046	@dbgap@:reads/SRP012000/SRS635747/SRX593579/SRR1386046/SRR1386046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNIA-09A-01D_TARGET-20-PARNIA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIA-14A-01D	DNA	EFO	SRS635747	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIA-14A-01D A42345 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42345	SRX593579	"Specific Capture analysis of normal sample TARGET-20-PARNIA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARNIA-14A-01D A42345 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42345_1_lane_dupsFlagged.bam	SRR1386046	@dbgap@:reads/SRP012000/SRS635747/SRX593579/SRR1386046/SRR1386046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNIA-09A-01D_TARGET-20-PARNIA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNIH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIH-09A-01D	DNA	EFO	SRS635497	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIH-09A-01D A41733 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41733	SRX593219	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNIH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARNIH-09A-01D A41733 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41733_1_lane_dupsFlagged.bam	SRR1385625	@dbgap@:reads/SRP012000/SRS635497/SRX593219/SRR1385625/SRR1385625.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNIH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNIH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARNIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNIH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIH-09A-01D	DNA	EFO	SRS635497	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIH-09A-01D A41733 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41733	SRX593219	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNIH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARNIH-09A-01D A41733 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41733_1_lane_dupsFlagged.bam	SRR1385625	@dbgap@:reads/SRP012000/SRS635497/SRX593219/SRR1385625/SRR1385625.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNIH-09A-01D_TARGET-20-PARNIH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNIH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIH-09A-01D	DNA	EFO	SRS635497	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIH-09A-01D A41733 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41733	SRX593219	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNIH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARNIH-09A-01D A41733 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41733_1_lane_dupsFlagged.bam	SRR1385625	@dbgap@:reads/SRP012000/SRS635497/SRX593219/SRR1385625/SRR1385625.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNIH-09A-01D_TARGET-20-PARNIH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNIH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIH-14A-01D	DNA	EFO	SRS635884	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIH-14A-01D A42467 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42467	SRX593844	"Specific Capture analysis of normal sample TARGET-20-PARNIH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARNIH-14A-01D A42467 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42467_1_lane_dupsFlagged.bam	SRR1386365	@dbgap@:reads/SRP012000/SRS635884/SRX593844/SRR1386365/SRR1386365.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNIH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNIH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARNIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNIH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIH-14A-01D	DNA	EFO	SRS635884	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIH-14A-01D A42467 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42467	SRX593844	"Specific Capture analysis of normal sample TARGET-20-PARNIH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARNIH-14A-01D A42467 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42467_1_lane_dupsFlagged.bam	SRR1386365	@dbgap@:reads/SRP012000/SRS635884/SRX593844/SRR1386365/SRR1386365.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNIH-09A-01D_TARGET-20-PARNIH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNIH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIH-14A-01D	DNA	EFO	SRS635884	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIH-14A-01D A42467 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42467	SRX593844	"Specific Capture analysis of normal sample TARGET-20-PARNIH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARNIH-14A-01D A42467 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42467_1_lane_dupsFlagged.bam	SRR1386365	@dbgap@:reads/SRP012000/SRS635884/SRX593844/SRR1386365/SRR1386365.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNIH-09A-01D_TARGET-20-PARNIH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNIL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIL-09A-01D	DNA	EFO	SRS633620	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIL-09A-01D A33434 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33434	SRX587914	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNIL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARNIL-09A-01D A33434 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33434_1_lane_dupsFlagged.bam	SRR1373849	@dbgap@:reads/SRP012000/SRS633620/SRX587914/SRR1373849/SRR1373849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNIL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNIL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARNIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNIN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIN-03A-01D	DNA	EFO	SRS635578	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIN-03A-01D A41932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41932	SRX593397	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNIN-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARNIN-03A-01D A41932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41932_1_lane_dupsFlagged.bam	SRR1385915	@dbgap@:reads/SRP012000/SRS635578/SRX593397/SRR1385915/SRR1385915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNIN-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNIN-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARNIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNIN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIN-03A-01D	DNA	EFO	SRS635578	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIN-03A-01D A41932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41932	SRX593397	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNIN-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARNIN-03A-01D A41932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41932_1_lane_dupsFlagged.bam	SRR1385915	@dbgap@:reads/SRP012000/SRS635578/SRX593397/SRR1385915/SRR1385915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNIN-03A-01D_TARGET-20-PARNIN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNIN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIN-03A-01D	DNA	EFO	SRS635578	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIN-03A-01D A41932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41932	SRX593397	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNIN-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARNIN-03A-01D A41932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41932_1_lane_dupsFlagged.bam	SRR1385915	@dbgap@:reads/SRP012000/SRS635578/SRX593397/SRR1385915/SRR1385915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNIN-03A-01D_TARGET-20-PARNIN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNIN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIN-14A-01D	DNA	EFO	SRS637391	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIN-14A-01D A42791 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42791	SRX597797	"Specific Capture analysis of normal sample TARGET-20-PARNIN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARNIN-14A-01D A42791 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42791_1_lane_dupsFlagged.bam	SRR1395129	@dbgap@:reads/SRP012000/SRS637391/SRX597797/SRR1395129/SRR1395129.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNIN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNIN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARNIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNIN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIN-14A-01D	DNA	EFO	SRS637391	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIN-14A-01D A42791 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42791	SRX597797	"Specific Capture analysis of normal sample TARGET-20-PARNIN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARNIN-14A-01D A42791 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42791_1_lane_dupsFlagged.bam	SRR1395129	@dbgap@:reads/SRP012000/SRS637391/SRX597797/SRR1395129/SRR1395129.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNIN-03A-01D_TARGET-20-PARNIN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNIN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNIN-14A-01D	DNA	EFO	SRS637391	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNIN-14A-01D A42791 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42791	SRX597797	"Specific Capture analysis of normal sample TARGET-20-PARNIN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARNIN-14A-01D A42791 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42791_1_lane_dupsFlagged.bam	SRR1395129	@dbgap@:reads/SRP012000/SRS637391/SRX597797/SRR1395129/SRR1395129.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNIN-03A-01D_TARGET-20-PARNIN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNJC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNJC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNJC-09A-01D	DNA	EFO	SRS635492	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNJC-09A-01D A41734 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41734	SRX593215	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNJC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARNJC-09A-01D A41734 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41734_1_lane_dupsFlagged.bam	SRR1385654	@dbgap@:reads/SRP012000/SRS635492/SRX593215/SRR1385654/SRR1385654.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNJC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNJC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARNJC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNJC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNJC-09A-01D	DNA	EFO	SRS635492	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNJC-09A-01D A41734 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41734	SRX593215	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNJC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARNJC-09A-01D A41734 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41734_1_lane_dupsFlagged.bam	SRR1385654	@dbgap@:reads/SRP012000/SRS635492/SRX593215/SRR1385654/SRR1385654.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNJC-09A-01D_TARGET-20-PARNJC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNJC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNJC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNJC-09A-01D	DNA	EFO	SRS635492	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNJC-09A-01D A41734 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41734	SRX593215	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNJC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARNJC-09A-01D A41734 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41734_1_lane_dupsFlagged.bam	SRR1385654	@dbgap@:reads/SRP012000/SRS635492/SRX593215/SRR1385654/SRR1385654.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNJC-09A-01D_TARGET-20-PARNJC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNJC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNJC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNJC-14A-01D	DNA	EFO	SRS635938	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNJC-14A-01D A42468 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42468	SRX593900	"Specific Capture analysis of normal sample TARGET-20-PARNJC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARNJC-14A-01D A42468 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42468_1_lane_dupsFlagged.bam	SRR1386362	@dbgap@:reads/SRP012000/SRS635938/SRX593900/SRR1386362/SRR1386362.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNJC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNJC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARNJC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNJC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNJC-14A-01D	DNA	EFO	SRS635938	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNJC-14A-01D A42468 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42468	SRX593900	"Specific Capture analysis of normal sample TARGET-20-PARNJC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARNJC-14A-01D A42468 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42468_1_lane_dupsFlagged.bam	SRR1386362	@dbgap@:reads/SRP012000/SRS635938/SRX593900/SRR1386362/SRR1386362.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNJC-09A-01D_TARGET-20-PARNJC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNJC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNJC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNJC-14A-01D	DNA	EFO	SRS635938	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNJC-14A-01D A42468 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42468	SRX593900	"Specific Capture analysis of normal sample TARGET-20-PARNJC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARNJC-14A-01D A42468 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42468_1_lane_dupsFlagged.bam	SRR1386362	@dbgap@:reads/SRP012000/SRS635938/SRX593900/SRR1386362/SRR1386362.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNJC-09A-01D_TARGET-20-PARNJC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-09A-01D	DNA	EFO	SRS489706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNNT-09A-01D A41844 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41844	SRX593298	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNNT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARNNT-09A-01D A41844 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41844_1_lane_dupsFlagged.bam	SRR1385780	@dbgap@:reads/SRP012000/SRS489706/SRX593298/SRR1385780/SRR1385780.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNNT-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNNT-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-09A-01D	DNA	EFO	SRS489706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNNT-09A-01D A41844 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41844	SRX593298	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNNT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARNNT-09A-01D A41844 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41844_1_lane_dupsFlagged.bam	SRR1385780	@dbgap@:reads/SRP012000/SRS489706/SRX593298/SRR1385780/SRR1385780.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNNT-09A-01D_TARGET-20-PARNNT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-09A-01D	DNA	EFO	SRS489706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNNT-09A-01D A41844 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41844	SRX593298	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNNT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARNNT-09A-01D A41844 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41844_1_lane_dupsFlagged.bam	SRR1385780	@dbgap@:reads/SRP012000/SRS489706/SRX593298/SRR1385780/SRR1385780.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNNT-09A-01D_TARGET-20-PARNNT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-14A-01D	DNA	EFO	SRS635661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNNT-14A-01D A41667 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41667	SRX593484	"Specific Capture analysis of normal sample TARGET-20-PARNNT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARNNT-14A-01D A41667 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41667_1_lane_dupsFlagged.bam	SRR1385992	@dbgap@:reads/SRP012000/SRS635661/SRX593484/SRR1385992/SRR1385992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNNT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNNT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-14A-01D	DNA	EFO	SRS635661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNNT-14A-01D A41667 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41667	SRX593484	"Specific Capture analysis of normal sample TARGET-20-PARNNT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARNNT-14A-01D A41667 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41667_1_lane_dupsFlagged.bam	SRR1385992	@dbgap@:reads/SRP012000/SRS635661/SRX593484/SRR1385992/SRR1385992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNNT-09A-01D_TARGET-20-PARNNT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNNT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNT-14A-01D	DNA	EFO	SRS635661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNNT-14A-01D A41667 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41667	SRX593484	"Specific Capture analysis of normal sample TARGET-20-PARNNT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARNNT-14A-01D A41667 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41667_1_lane_dupsFlagged.bam	SRR1385992	@dbgap@:reads/SRP012000/SRS635661/SRX593484/SRR1385992/SRR1385992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNNT-09A-01D_TARGET-20-PARNNT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNNX-09A-01D	DNA	EFO	SRS635530	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNNX-09A-01D A41815 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41815	SRX593304	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNNX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARNNX-09A-01D A41815 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41815_1_lane_dupsFlagged.bam	SRR1385793	@dbgap@:reads/SRP012000/SRS635530/SRX593304/SRR1385793/SRR1385793.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNNX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNNX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARNPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNPC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNPC-09A-01D	DNA	EFO	SRS633651	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNPC-09A-01D A33370 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33370	SRX587945	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNPC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARNPC-09A-01D A33370 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33370_1_lane_dupsFlagged.bam	SRR1373798	@dbgap@:reads/SRP012000/SRS633651/SRX587945/SRR1373798/SRR1373798.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNPC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNPC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARNPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNPC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNPC-09A-01D	DNA	EFO	SRS633651	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNPC-09A-01D A33370 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33370	SRX587945	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNPC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARNPC-09A-01D A33370 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33370_1_lane_dupsFlagged.bam	SRR1373798	@dbgap@:reads/SRP012000/SRS633651/SRX587945/SRR1373798/SRR1373798.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNPC-09A-01D_TARGET-20-PARNPC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNPC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNPC-09A-01D	DNA	EFO	SRS633651	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNPC-09A-01D A33370 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33370	SRX587945	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNPC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARNPC-09A-01D A33370 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33370_1_lane_dupsFlagged.bam	SRR1373798	@dbgap@:reads/SRP012000/SRS633651/SRX587945/SRR1373798/SRR1373798.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNPC-09A-01D_TARGET-20-PARNPC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNPC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNPC-14A-01D	DNA	EFO	SRS635946	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNPC-14A-01D A42469 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42469	SRX593907	"Specific Capture analysis of normal sample TARGET-20-PARNPC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARNPC-14A-01D A42469 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42469_1_lane_dupsFlagged.bam	SRR1386378	@dbgap@:reads/SRP012000/SRS635946/SRX593907/SRR1386378/SRR1386378.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNPC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNPC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARNPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNPC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNPC-14A-01D	DNA	EFO	SRS635946	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNPC-14A-01D A42469 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42469	SRX593907	"Specific Capture analysis of normal sample TARGET-20-PARNPC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARNPC-14A-01D A42469 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42469_1_lane_dupsFlagged.bam	SRR1386378	@dbgap@:reads/SRP012000/SRS635946/SRX593907/SRR1386378/SRR1386378.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNPC-09A-01D_TARGET-20-PARNPC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNPC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNPC-14A-01D	DNA	EFO	SRS635946	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNPC-14A-01D A42469 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42469	SRX593907	"Specific Capture analysis of normal sample TARGET-20-PARNPC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARNPC-14A-01D A42469 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42469_1_lane_dupsFlagged.bam	SRR1386378	@dbgap@:reads/SRP012000/SRS635946/SRX593907/SRR1386378/SRR1386378.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNPC-09A-01D_TARGET-20-PARNPC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNPF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNPF-09A-01D	DNA	EFO	SRS635559	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNPF-09A-01D A41816 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41816	SRX593369	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNPF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARNPF-09A-01D A41816 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41816_1_lane_dupsFlagged.bam	SRR1385839	@dbgap@:reads/SRP012000/SRS635559/SRX593369/SRR1385839/SRR1385839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNPF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNPF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARNPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNPF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNPF-09A-01D	DNA	EFO	SRS635559	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNPF-09A-01D A41816 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41816	SRX593369	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNPF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARNPF-09A-01D A41816 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41816_1_lane_dupsFlagged.bam	SRR1385839	@dbgap@:reads/SRP012000/SRS635559/SRX593369/SRR1385839/SRR1385839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNPF-09A-01D_TARGET-20-PARNPF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNPF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNPF-09A-01D	DNA	EFO	SRS635559	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNPF-09A-01D A41816 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41816	SRX593369	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNPF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARNPF-09A-01D A41816 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41816_1_lane_dupsFlagged.bam	SRR1385839	@dbgap@:reads/SRP012000/SRS635559/SRX593369/SRR1385839/SRR1385839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNPF-09A-01D_TARGET-20-PARNPF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNPF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNPF-14A-01D	DNA	EFO	SRS637366	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNPF-14A-01D A42845 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42845	SRX597772	"Specific Capture analysis of normal sample TARGET-20-PARNPF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARNPF-14A-01D A42845 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42845_1_lane_dupsFlagged.bam	SRR1395098	@dbgap@:reads/SRP012000/SRS637366/SRX597772/SRR1395098/SRR1395098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNPF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNPF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARNPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNPF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNPF-14A-01D	DNA	EFO	SRS637366	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNPF-14A-01D A42845 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42845	SRX597772	"Specific Capture analysis of normal sample TARGET-20-PARNPF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARNPF-14A-01D A42845 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42845_1_lane_dupsFlagged.bam	SRR1395098	@dbgap@:reads/SRP012000/SRS637366/SRX597772/SRR1395098/SRR1395098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNPF-09A-01D_TARGET-20-PARNPF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNPF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNPF-14A-01D	DNA	EFO	SRS637366	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNPF-14A-01D A42845 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42845	SRX597772	"Specific Capture analysis of normal sample TARGET-20-PARNPF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARNPF-14A-01D A42845 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42845_1_lane_dupsFlagged.bam	SRR1395098	@dbgap@:reads/SRP012000/SRS637366/SRX597772/SRR1395098/SRR1395098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNPF-09A-01D_TARGET-20-PARNPF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNRS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNRS-03A-01D	DNA	EFO	SRS633642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNRS-03A-01D A33379 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33379	SRX587936	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNRS-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARNRS-03A-01D A33379 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33379_1_lane_dupsFlagged.bam	SRR1373856	@dbgap@:reads/SRP012000/SRS633642/SRX587936/SRR1373856/SRR1373856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNRS-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNRS-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARNRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNRS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNRS-03A-01D	DNA	EFO	SRS633642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNRS-03A-01D A33379 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33379	SRX587936	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNRS-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARNRS-03A-01D A33379 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33379_1_lane_dupsFlagged.bam	SRR1373856	@dbgap@:reads/SRP012000/SRS633642/SRX587936/SRR1373856/SRR1373856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNRS-03A-01D_TARGET-20-PARNRS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNRS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNRS-03A-01D	DNA	EFO	SRS633642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNRS-03A-01D A33379 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33379	SRX587936	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNRS-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARNRS-03A-01D A33379 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33379_1_lane_dupsFlagged.bam	SRR1373856	@dbgap@:reads/SRP012000/SRS633642/SRX587936/SRR1373856/SRR1373856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNRS-03A-01D_TARGET-20-PARNRS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNRS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNRS-14A-01D	DNA	EFO	SRS634702	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNRS-14A-01D A41540 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41540	SRX590805	"Specific Capture analysis of normal sample TARGET-20-PARNRS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARNRS-14A-01D A41540 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41540_1_lane_dupsFlagged.bam	SRR1379804	@dbgap@:reads/SRP012000/SRS634702/SRX590805/SRR1379804/SRR1379804.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNRS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNRS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARNRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNRS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNRS-14A-01D	DNA	EFO	SRS634702	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNRS-14A-01D A41540 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41540	SRX590805	"Specific Capture analysis of normal sample TARGET-20-PARNRS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARNRS-14A-01D A41540 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41540_1_lane_dupsFlagged.bam	SRR1379804	@dbgap@:reads/SRP012000/SRS634702/SRX590805/SRR1379804/SRR1379804.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNRS-03A-01D_TARGET-20-PARNRS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNRS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNRS-14A-01D	DNA	EFO	SRS634702	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNRS-14A-01D A41540 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41540	SRX590805	"Specific Capture analysis of normal sample TARGET-20-PARNRS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARNRS-14A-01D A41540 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41540_1_lane_dupsFlagged.bam	SRR1379804	@dbgap@:reads/SRP012000/SRS634702/SRX590805/SRR1379804/SRR1379804.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNRS-03A-01D_TARGET-20-PARNRS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNTM-09A-01D	DNA	EFO	SRS629191	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNTM-09A-01D A33359 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33359	SRX575247	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNTM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-20-PARNTM-09A-01D A33359 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33359_1_lane_dupsFlagged.bam	SRR1346473	@dbgap@:reads/SRP012000/SRS629191/SRX575247/SRR1346473/SRR1346473.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNTM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNTM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARNTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNTM-09A-01D	DNA	EFO	SRS629191	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNTM-09A-01D A33359 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33359	SRX575247	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNTM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-20-PARNTM-09A-01D A33359 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33359_1_lane_dupsFlagged.bam	SRR1346473	@dbgap@:reads/SRP012000/SRS629191/SRX575247/SRR1346473/SRR1346473.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNTM-09A-01D_TARGET-20-PARNTM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNTM-09A-01D	DNA	EFO	SRS629191	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNTM-09A-01D A33359 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33359	SRX575247	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNTM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-20-PARNTM-09A-01D A33359 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33359_1_lane_dupsFlagged.bam	SRR1346473	@dbgap@:reads/SRP012000/SRS629191/SRX575247/SRR1346473/SRR1346473.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNTM-09A-01D_TARGET-20-PARNTM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNTM-14A-01D	DNA	EFO	SRS635887	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNTM-14A-01D A42470 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42470	SRX593846	"Specific Capture analysis of normal sample TARGET-20-PARNTM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARNTM-14A-01D A42470 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42470_1_lane_dupsFlagged.bam	SRR1386341	@dbgap@:reads/SRP012000/SRS635887/SRX593846/SRR1386341/SRR1386341.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNTM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNTM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARNTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNTM-14A-01D	DNA	EFO	SRS635887	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNTM-14A-01D A42470 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42470	SRX593846	"Specific Capture analysis of normal sample TARGET-20-PARNTM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARNTM-14A-01D A42470 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42470_1_lane_dupsFlagged.bam	SRR1386341	@dbgap@:reads/SRP012000/SRS635887/SRX593846/SRR1386341/SRR1386341.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNTM-09A-01D_TARGET-20-PARNTM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNTM-14A-01D	DNA	EFO	SRS635887	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNTM-14A-01D A42470 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42470	SRX593846	"Specific Capture analysis of normal sample TARGET-20-PARNTM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARNTM-14A-01D A42470 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42470_1_lane_dupsFlagged.bam	SRR1386341	@dbgap@:reads/SRP012000/SRS635887/SRX593846/SRR1386341/SRR1386341.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNTM-09A-01D_TARGET-20-PARNTM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNXW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNXW-03A-01D	DNA	EFO	SRS629180	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNXW-03A-01D A33358 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33358	SRX575236	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNXW-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARNXW-03A-01D A33358 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33358_1_lane_dupsFlagged.bam	SRR1346451	@dbgap@:reads/SRP012000/SRS629180/SRX575236/SRR1346451/SRR1346451.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNXW-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNXW-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARNXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNXW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNXW-03A-01D	DNA	EFO	SRS629180	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNXW-03A-01D A33358 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33358	SRX575236	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNXW-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARNXW-03A-01D A33358 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33358_1_lane_dupsFlagged.bam	SRR1346451	@dbgap@:reads/SRP012000/SRS629180/SRX575236/SRR1346451/SRR1346451.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNXW-03A-01D_TARGET-20-PARNXW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNXW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNXW-03A-01D	DNA	EFO	SRS629180	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNXW-03A-01D A33358 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33358	SRX575236	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNXW-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARNXW-03A-01D A33358 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33358_1_lane_dupsFlagged.bam	SRR1346451	@dbgap@:reads/SRP012000/SRS629180/SRX575236/SRR1346451/SRR1346451.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNXW-03A-01D_TARGET-20-PARNXW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNXW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNXW-14A-01D	DNA	EFO	SRS634680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNXW-14A-01D A41541 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41541	SRX590778	"Specific Capture analysis of normal sample TARGET-20-PARNXW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARNXW-14A-01D A41541 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41541_1_lane_dupsFlagged.bam	SRR1379795	@dbgap@:reads/SRP012000/SRS634680/SRX590778/SRR1379795/SRR1379795.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNXW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNXW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARNXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNXW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNXW-14A-01D	DNA	EFO	SRS634680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNXW-14A-01D A41541 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41541	SRX590778	"Specific Capture analysis of normal sample TARGET-20-PARNXW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARNXW-14A-01D A41541 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41541_1_lane_dupsFlagged.bam	SRR1379795	@dbgap@:reads/SRP012000/SRS634680/SRX590778/SRR1379795/SRR1379795.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNXW-03A-01D_TARGET-20-PARNXW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARNXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARNXW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNXW-14A-01D	DNA	EFO	SRS634680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNXW-14A-01D A41541 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41541	SRX590778	"Specific Capture analysis of normal sample TARGET-20-PARNXW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARNXW-14A-01D A41541 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41541_1_lane_dupsFlagged.bam	SRR1379795	@dbgap@:reads/SRP012000/SRS634680/SRX590778/SRR1379795/SRR1379795.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARNXW-03A-01D_TARGET-20-PARNXW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-09A-02D	DNA	EFO	SRS628325	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNZW-09A-02D A31242 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31242	SRX573400	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNZW-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARNZW-09A-02D A31242 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31242_1_lane_dupsFlagged.bam	SRR1342652	@dbgap@:reads/SRP012000/SRS628325/SRX573400/SRR1342652/SRR1342652.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNZW-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNZW-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARNZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARNZW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARNZW-40A-02D	DNA	EFO	SRS637521	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARNZW-40A-02D A42740 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42740	SRX597958	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARNZW-40A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARNZW-40A-02D A42740 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42740_1_lane_dupsFlagged.bam	SRR1395274	@dbgap@:reads/SRP012000/SRS637521/SRX597958/SRR1395274/SRR1395274.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARNZW-40A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARNZW-40A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARPBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPBA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPBA-09A-01D	DNA	EFO	SRS635542	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPBA-09A-01D A41817 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41817	SRX593338	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPBA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARPBA-09A-01D A41817 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41817_1_lane_dupsFlagged.bam	SRR1385770	@dbgap@:reads/SRP012000/SRS635542/SRX593338/SRR1385770/SRR1385770.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPBA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPBA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARPBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPBA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPBA-09A-01D	DNA	EFO	SRS635542	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPBA-09A-01D A41817 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41817	SRX593338	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPBA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARPBA-09A-01D A41817 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41817_1_lane_dupsFlagged.bam	SRR1385770	@dbgap@:reads/SRP012000/SRS635542/SRX593338/SRR1385770/SRR1385770.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPBA-09A-01D_TARGET-20-PARPBA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPBA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPBA-09A-01D	DNA	EFO	SRS635542	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPBA-09A-01D A41817 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41817	SRX593338	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPBA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARPBA-09A-01D A41817 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41817_1_lane_dupsFlagged.bam	SRR1385770	@dbgap@:reads/SRP012000/SRS635542/SRX593338/SRR1385770/SRR1385770.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPBA-09A-01D_TARGET-20-PARPBA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPBA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPBA-14A-01D	DNA	EFO	SRS634718	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPBA-14A-01D A41542 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41542	SRX590825	"Specific Capture analysis of normal sample TARGET-20-PARPBA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARPBA-14A-01D A41542 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41542_1_lane_dupsFlagged.bam	SRR1379847	@dbgap@:reads/SRP012000/SRS634718/SRX590825/SRR1379847/SRR1379847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPBA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPBA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARPBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPBA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPBA-14A-01D	DNA	EFO	SRS634718	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPBA-14A-01D A41542 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41542	SRX590825	"Specific Capture analysis of normal sample TARGET-20-PARPBA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARPBA-14A-01D A41542 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41542_1_lane_dupsFlagged.bam	SRR1379847	@dbgap@:reads/SRP012000/SRS634718/SRX590825/SRR1379847/SRR1379847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPBA-09A-01D_TARGET-20-PARPBA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPBA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPBA-14A-01D	DNA	EFO	SRS634718	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPBA-14A-01D A41542 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41542	SRX590825	"Specific Capture analysis of normal sample TARGET-20-PARPBA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARPBA-14A-01D A41542 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41542_1_lane_dupsFlagged.bam	SRR1379847	@dbgap@:reads/SRP012000/SRS634718/SRX590825/SRR1379847/SRR1379847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPBA-09A-01D_TARGET-20-PARPBA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPBF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPBF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPBF-09A-02D	DNA	EFO	SRS628718	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPBF-09A-02D A32209 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32209	SRX574412	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPBF-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARPBF-09A-02D A32209 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32209_1_lane_dupsFlagged.bam	SRR1344840	@dbgap@:reads/SRP012000/SRS628718/SRX574412/SRR1344840/SRR1344840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPBF-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPBF-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARPBF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPBF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPBF-09A-02D	DNA	EFO	SRS628718	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPBF-09A-02D A32209 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32209	SRX574412	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPBF-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARPBF-09A-02D A32209 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32209_1_lane_dupsFlagged.bam	SRR1344840	@dbgap@:reads/SRP012000/SRS628718/SRX574412/SRR1344840/SRR1344840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPBF-09A-02D_TARGET-20-PARPBF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPBF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPBF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPBF-09A-02D	DNA	EFO	SRS628718	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPBF-09A-02D A32209 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32209	SRX574412	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPBF-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARPBF-09A-02D A32209 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32209_1_lane_dupsFlagged.bam	SRR1344840	@dbgap@:reads/SRP012000/SRS628718/SRX574412/SRR1344840/SRR1344840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPBF-09A-02D_TARGET-20-PARPBF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPBF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPBF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPBF-14A-01D	DNA	EFO	SRS637416	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPBF-14A-01D A42792 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42792	SRX597825	"Specific Capture analysis of normal sample TARGET-20-PARPBF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARPBF-14A-01D A42792 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42792_1_lane_dupsFlagged.bam	SRR1395086	@dbgap@:reads/SRP012000/SRS637416/SRX597825/SRR1395086/SRR1395086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPBF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPBF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARPBF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPBF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPBF-14A-01D	DNA	EFO	SRS637416	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPBF-14A-01D A42792 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42792	SRX597825	"Specific Capture analysis of normal sample TARGET-20-PARPBF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARPBF-14A-01D A42792 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42792_1_lane_dupsFlagged.bam	SRR1395086	@dbgap@:reads/SRP012000/SRS637416/SRX597825/SRR1395086/SRR1395086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPBF-09A-02D_TARGET-20-PARPBF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPBF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPBF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPBF-14A-01D	DNA	EFO	SRS637416	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPBF-14A-01D A42792 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42792	SRX597825	"Specific Capture analysis of normal sample TARGET-20-PARPBF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARPBF-14A-01D A42792 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42792_1_lane_dupsFlagged.bam	SRR1395086	@dbgap@:reads/SRP012000/SRS637416/SRX597825/SRR1395086/SRR1395086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPBF-09A-02D_TARGET-20-PARPBF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPCT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPCT-09A-01D	DNA	EFO	SRS635583	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPCT-09A-01D A41933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41933	SRX593402	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPCT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARPCT-09A-01D A41933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41933_1_lane_dupsFlagged.bam	SRR1385903	@dbgap@:reads/SRP012000/SRS635583/SRX593402/SRR1385903/SRR1385903.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPCT-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPCT-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARPCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPCT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPCT-09A-01D	DNA	EFO	SRS635583	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPCT-09A-01D A41933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41933	SRX593402	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPCT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARPCT-09A-01D A41933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41933_1_lane_dupsFlagged.bam	SRR1385903	@dbgap@:reads/SRP012000/SRS635583/SRX593402/SRR1385903/SRR1385903.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPCT-09A-01D_TARGET-20-PARPCT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPCT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPCT-09A-01D	DNA	EFO	SRS635583	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPCT-09A-01D A41933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41933	SRX593402	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPCT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARPCT-09A-01D A41933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41933_1_lane_dupsFlagged.bam	SRR1385903	@dbgap@:reads/SRP012000/SRS635583/SRX593402/SRR1385903/SRR1385903.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPCT-09A-01D_TARGET-20-PARPCT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPCT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPCT-14A-01D	DNA	EFO	SRS637395	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPCT-14A-01D A42793 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42793	SRX597802	"Specific Capture analysis of normal sample TARGET-20-PARPCT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARPCT-14A-01D A42793 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42793_1_lane_dupsFlagged.bam	SRR1395103	@dbgap@:reads/SRP012000/SRS637395/SRX597802/SRR1395103/SRR1395103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPCT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPCT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARPCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPCT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPCT-14A-01D	DNA	EFO	SRS637395	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPCT-14A-01D A42793 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42793	SRX597802	"Specific Capture analysis of normal sample TARGET-20-PARPCT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARPCT-14A-01D A42793 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42793_1_lane_dupsFlagged.bam	SRR1395103	@dbgap@:reads/SRP012000/SRS637395/SRX597802/SRR1395103/SRR1395103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPCT-09A-01D_TARGET-20-PARPCT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPCT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPCT-14A-01D	DNA	EFO	SRS637395	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPCT-14A-01D A42793 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42793	SRX597802	"Specific Capture analysis of normal sample TARGET-20-PARPCT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARPCT-14A-01D A42793 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42793_1_lane_dupsFlagged.bam	SRR1395103	@dbgap@:reads/SRP012000/SRS637395/SRX597802/SRR1395103/SRR1395103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPCT-09A-01D_TARGET-20-PARPCT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-04A-02D	DNA	EFO	SRS637570	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPDS-04A-02D A42715 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42715	SRX598011	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPDS-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARPDS-04A-02D A42715 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42715_1_lane_dupsFlagged.bam	SRR1395244	@dbgap@:reads/SRP012000/SRS637570/SRX598011/SRR1395244/SRR1395244.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPDS-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPDS-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-04A-02D	DNA	EFO	SRS637570	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPDS-04A-02D A42715 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42715	SRX598011	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPDS-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARPDS-04A-02D A42715 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42715_1_lane_dupsFlagged.bam	SRR1395244	@dbgap@:reads/SRP012000/SRS637570/SRX598011/SRR1395244/SRR1395244.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPDS-04A-02D_TARGET-20-PARPDS-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-04A-02D	DNA	EFO	SRS637570	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPDS-04A-02D A42715 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42715	SRX598011	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPDS-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARPDS-04A-02D A42715 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42715_1_lane_dupsFlagged.bam	SRR1395244	@dbgap@:reads/SRP012000/SRS637570/SRX598011/SRR1395244/SRR1395244.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPDS-04A-02D_TARGET-20-PARPDS-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01D	DNA	EFO	SRS301099	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPDS-09A-01D A31236 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31236	SRX573343	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPDS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARPDS-09A-01D A31236 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31236_1_lane_dupsFlagged.bam	SRR1342683	@dbgap@:reads/SRP012000/SRS301099/SRX573343/SRR1342683/SRR1342683.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPDS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPDS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01D	DNA	EFO	SRS301099	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPDS-09A-01D A31236 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31236	SRX573343	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPDS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARPDS-09A-01D A31236 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31236_1_lane_dupsFlagged.bam	SRR1342683	@dbgap@:reads/SRP012000/SRS301099/SRX573343/SRR1342683/SRR1342683.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPDS-09A-01D_TARGET-20-PARPDS-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01D	DNA	EFO	SRS301099	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPDS-09A-01D A31236 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31236	SRX573343	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPDS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARPDS-09A-01D A31236 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31236_1_lane_dupsFlagged.bam	SRR1342683	@dbgap@:reads/SRP012000/SRS301099/SRX573343/SRR1342683/SRR1342683.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPDS-09A-01D_TARGET-20-PARPDS-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-03D	DNA	EFO	SRS635872	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPDS-14A-03D A42471 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42471	SRX593832	"Specific Capture analysis of normal sample TARGET-20-PARPDS-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARPDS-14A-03D A42471 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42471_1_lane_dupsFlagged.bam	SRR1386334	@dbgap@:reads/SRP012000/SRS635872/SRX593832/SRR1386334/SRR1386334.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPDS-14A-03D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPDS-14A-03D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-03D	DNA	EFO	SRS635872	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPDS-14A-03D A42471 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42471	SRX593832	"Specific Capture analysis of normal sample TARGET-20-PARPDS-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARPDS-14A-03D A42471 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42471_1_lane_dupsFlagged.bam	SRR1386334	@dbgap@:reads/SRP012000/SRS635872/SRX593832/SRR1386334/SRR1386334.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPDS-04A-02D_TARGET-20-PARPDS-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-03D	DNA	EFO	SRS635872	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPDS-14A-03D A42471 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42471	SRX593832	"Specific Capture analysis of normal sample TARGET-20-PARPDS-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARPDS-14A-03D A42471 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42471_1_lane_dupsFlagged.bam	SRR1386334	@dbgap@:reads/SRP012000/SRS635872/SRX593832/SRR1386334/SRR1386334.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPDS-04A-02D_TARGET-20-PARPDS-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-03D	DNA	EFO	SRS635872	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPDS-14A-03D A42471 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42471	SRX593832	"Specific Capture analysis of normal sample TARGET-20-PARPDS-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARPDS-14A-03D A42471 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42471_1_lane_dupsFlagged.bam	SRR1386334	@dbgap@:reads/SRP012000/SRS635872/SRX593832/SRR1386334/SRR1386334.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPDS-09A-01D_TARGET-20-PARPDS-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-14A-03D	DNA	EFO	SRS635872	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPDS-14A-03D A42471 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42471	SRX593832	"Specific Capture analysis of normal sample TARGET-20-PARPDS-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARPDS-14A-03D A42471 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42471_1_lane_dupsFlagged.bam	SRR1386334	@dbgap@:reads/SRP012000/SRS635872/SRX593832/SRR1386334/SRR1386334.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPDS-09A-01D_TARGET-20-PARPDS-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPEK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPEK-09A-01D	DNA	EFO	SRS635622	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPEK-09A-01D A41934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41934	SRX593443	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPEK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARPEK-09A-01D A41934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41934_1_lane_dupsFlagged.bam	SRR1385914	@dbgap@:reads/SRP012000/SRS635622/SRX593443/SRR1385914/SRR1385914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPEK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPEK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARPEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPEK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPEK-09A-01D	DNA	EFO	SRS635622	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPEK-09A-01D A41934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41934	SRX593443	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPEK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARPEK-09A-01D A41934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41934_1_lane_dupsFlagged.bam	SRR1385914	@dbgap@:reads/SRP012000/SRS635622/SRX593443/SRR1385914/SRR1385914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPEK-09A-01D_TARGET-20-PARPEK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPEK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPEK-09A-01D	DNA	EFO	SRS635622	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPEK-09A-01D A41934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41934	SRX593443	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPEK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARPEK-09A-01D A41934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41934_1_lane_dupsFlagged.bam	SRR1385914	@dbgap@:reads/SRP012000/SRS635622/SRX593443/SRR1385914/SRR1385914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPEK-09A-01D_TARGET-20-PARPEK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPEK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPEK-14A-01D	DNA	EFO	SRS637380	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPEK-14A-01D A42794 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42794	SRX597785	"Specific Capture analysis of normal sample TARGET-20-PARPEK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARPEK-14A-01D A42794 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42794_1_lane_dupsFlagged.bam	SRR1395135	@dbgap@:reads/SRP012000/SRS637380/SRX597785/SRR1395135/SRR1395135.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPEK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPEK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARPEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPEK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPEK-14A-01D	DNA	EFO	SRS637380	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPEK-14A-01D A42794 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42794	SRX597785	"Specific Capture analysis of normal sample TARGET-20-PARPEK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARPEK-14A-01D A42794 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42794_1_lane_dupsFlagged.bam	SRR1395135	@dbgap@:reads/SRP012000/SRS637380/SRX597785/SRR1395135/SRR1395135.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPEK-09A-01D_TARGET-20-PARPEK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPEK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPEK-14A-01D	DNA	EFO	SRS637380	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPEK-14A-01D A42794 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42794	SRX597785	"Specific Capture analysis of normal sample TARGET-20-PARPEK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARPEK-14A-01D A42794 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42794_1_lane_dupsFlagged.bam	SRR1395135	@dbgap@:reads/SRP012000/SRS637380/SRX597785/SRR1395135/SRR1395135.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPEK-09A-01D_TARGET-20-PARPEK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPHH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPHH-03A-01D	DNA	EFO	SRS633659	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPHH-03A-01D A33435 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33435	SRX587953	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPHH-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARPHH-03A-01D A33435 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33435_1_lane_dupsFlagged.bam	SRR1373805	@dbgap@:reads/SRP012000/SRS633659/SRX587953/SRR1373805/SRR1373805.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPHH-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPHH-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARPHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPHH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPHH-03A-01D	DNA	EFO	SRS633659	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPHH-03A-01D A33435 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33435	SRX587953	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPHH-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARPHH-03A-01D A33435 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33435_1_lane_dupsFlagged.bam	SRR1373805	@dbgap@:reads/SRP012000/SRS633659/SRX587953/SRR1373805/SRR1373805.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPHH-03A-01D_TARGET-20-PARPHH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPHH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPHH-03A-01D	DNA	EFO	SRS633659	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPHH-03A-01D A33435 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33435	SRX587953	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPHH-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARPHH-03A-01D A33435 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33435_1_lane_dupsFlagged.bam	SRR1373805	@dbgap@:reads/SRP012000/SRS633659/SRX587953/SRR1373805/SRR1373805.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPHH-03A-01D_TARGET-20-PARPHH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPHH-14A-01D	DNA	EFO	SRS634745	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPHH-14A-01D A41543 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41543	SRX590858	"Specific Capture analysis of normal sample TARGET-20-PARPHH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARPHH-14A-01D A41543 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41543_1_lane_dupsFlagged.bam	SRR1379837	@dbgap@:reads/SRP012000/SRS634745/SRX590858/SRR1379837/SRR1379837.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPHH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPHH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARPHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPHH-14A-01D	DNA	EFO	SRS634745	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPHH-14A-01D A41543 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41543	SRX590858	"Specific Capture analysis of normal sample TARGET-20-PARPHH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARPHH-14A-01D A41543 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41543_1_lane_dupsFlagged.bam	SRR1379837	@dbgap@:reads/SRP012000/SRS634745/SRX590858/SRR1379837/SRR1379837.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPHH-03A-01D_TARGET-20-PARPHH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPHH-14A-01D	DNA	EFO	SRS634745	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPHH-14A-01D A41543 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41543	SRX590858	"Specific Capture analysis of normal sample TARGET-20-PARPHH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARPHH-14A-01D A41543 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41543_1_lane_dupsFlagged.bam	SRR1379837	@dbgap@:reads/SRP012000/SRS634745/SRX590858/SRR1379837/SRR1379837.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPHH-03A-01D_TARGET-20-PARPHH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPLC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPLC-03A-01D	DNA	EFO	SRS628754	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPLC-03A-01D A32210 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32210	SRX574450	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPLC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARPLC-03A-01D A32210 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32210_1_lane_dupsFlagged.bam	SRR1344855	@dbgap@:reads/SRP012000/SRS628754/SRX574450/SRR1344855/SRR1344855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPLC-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPLC-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARPLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPLC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPLC-03A-01D	DNA	EFO	SRS628754	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPLC-03A-01D A32210 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32210	SRX574450	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPLC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARPLC-03A-01D A32210 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32210_1_lane_dupsFlagged.bam	SRR1344855	@dbgap@:reads/SRP012000/SRS628754/SRX574450/SRR1344855/SRR1344855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPLC-03A-01D_TARGET-20-PARPLC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPLC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPLC-03A-01D	DNA	EFO	SRS628754	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPLC-03A-01D A32210 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32210	SRX574450	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPLC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARPLC-03A-01D A32210 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32210_1_lane_dupsFlagged.bam	SRR1344855	@dbgap@:reads/SRP012000/SRS628754/SRX574450/SRR1344855/SRR1344855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPLC-03A-01D_TARGET-20-PARPLC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPLC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPLC-14A-01D	DNA	EFO	SRS634746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPLC-14A-01D A41544 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41544	SRX590860	"Specific Capture analysis of normal sample TARGET-20-PARPLC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARPLC-14A-01D A41544 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41544_1_lane_dupsFlagged.bam	SRR1379867	@dbgap@:reads/SRP012000/SRS634746/SRX590860/SRR1379867/SRR1379867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPLC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPLC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARPLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPLC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPLC-14A-01D	DNA	EFO	SRS634746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPLC-14A-01D A41544 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41544	SRX590860	"Specific Capture analysis of normal sample TARGET-20-PARPLC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARPLC-14A-01D A41544 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41544_1_lane_dupsFlagged.bam	SRR1379867	@dbgap@:reads/SRP012000/SRS634746/SRX590860/SRR1379867/SRR1379867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPLC-03A-01D_TARGET-20-PARPLC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPLC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPLC-14A-01D	DNA	EFO	SRS634746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPLC-14A-01D A41544 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41544	SRX590860	"Specific Capture analysis of normal sample TARGET-20-PARPLC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARPLC-14A-01D A41544 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41544_1_lane_dupsFlagged.bam	SRR1379867	@dbgap@:reads/SRP012000/SRS634746/SRX590860/SRR1379867/SRR1379867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPLC-03A-01D_TARGET-20-PARPLC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-03A-01D	DNA	EFO	SRS635598	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPPY-03A-01D A41947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41947	SRX593418	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPPY-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARPPY-03A-01D A41947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41947_1_lane_dupsFlagged.bam	SRR1385908	@dbgap@:reads/SRP012000/SRS635598/SRX593418/SRR1385908/SRR1385908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPPY-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPPY-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-03A-01D	DNA	EFO	SRS635598	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPPY-03A-01D A41947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41947	SRX593418	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPPY-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARPPY-03A-01D A41947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41947_1_lane_dupsFlagged.bam	SRR1385908	@dbgap@:reads/SRP012000/SRS635598/SRX593418/SRR1385908/SRR1385908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPPY-03A-01D_TARGET-20-PARPPY-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-03A-01D	DNA	EFO	SRS635598	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPPY-03A-01D A41947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41947	SRX593418	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPPY-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARPPY-03A-01D A41947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41947_1_lane_dupsFlagged.bam	SRR1385908	@dbgap@:reads/SRP012000/SRS635598/SRX593418/SRR1385908/SRR1385908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPPY-03A-01D_TARGET-20-PARPPY-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-02D	DNA	EFO	SRS637360	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPPY-14A-02D A42795 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42795	SRX597765	"Specific Capture analysis of normal sample TARGET-20-PARPPY-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARPPY-14A-02D A42795 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42795_1_lane_dupsFlagged.bam	SRR1395115	@dbgap@:reads/SRP012000/SRS637360/SRX597765/SRR1395115/SRR1395115.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPPY-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPPY-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-02D	DNA	EFO	SRS637360	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPPY-14A-02D A42795 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42795	SRX597765	"Specific Capture analysis of normal sample TARGET-20-PARPPY-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARPPY-14A-02D A42795 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42795_1_lane_dupsFlagged.bam	SRR1395115	@dbgap@:reads/SRP012000/SRS637360/SRX597765/SRR1395115/SRR1395115.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPPY-03A-01D_TARGET-20-PARPPY-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-02D	DNA	EFO	SRS637360	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPPY-14A-02D A42795 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42795	SRX597765	"Specific Capture analysis of normal sample TARGET-20-PARPPY-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARPPY-14A-02D A42795 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42795_1_lane_dupsFlagged.bam	SRR1395115	@dbgap@:reads/SRP012000/SRS637360/SRX597765/SRR1395115/SRR1395115.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPPY-03A-01D_TARGET-20-PARPPY-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-02D	DNA	EFO	SRS637360	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPPY-14A-02D A42795 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42795	SRX597765	"Specific Capture analysis of normal sample TARGET-20-PARPPY-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARPPY-14A-02D A42795 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42795_1_lane_dupsFlagged.bam	SRR1395115	@dbgap@:reads/SRP012000/SRS637360/SRX597765/SRR1395115/SRR1395115.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPPY-40A-02D_TARGET-20-PARPPY-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-14A-02D	DNA	EFO	SRS637360	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPPY-14A-02D A42795 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42795	SRX597765	"Specific Capture analysis of normal sample TARGET-20-PARPPY-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARPPY-14A-02D A42795 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42795_1_lane_dupsFlagged.bam	SRR1395115	@dbgap@:reads/SRP012000/SRS637360/SRX597765/SRR1395115/SRR1395115.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPPY-40A-02D_TARGET-20-PARPPY-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-02D	DNA	EFO	SRS637520	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPPY-40A-02D A42710 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42710	SRX597957	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPPY-40A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARPPY-40A-02D A42710 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42710_1_lane_dupsFlagged.bam	SRR1395252	@dbgap@:reads/SRP012000/SRS637520/SRX597957/SRR1395252/SRR1395252.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPPY-40A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPPY-40A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-02D	DNA	EFO	SRS637520	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPPY-40A-02D A42710 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42710	SRX597957	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPPY-40A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARPPY-40A-02D A42710 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42710_1_lane_dupsFlagged.bam	SRR1395252	@dbgap@:reads/SRP012000/SRS637520/SRX597957/SRR1395252/SRR1395252.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPPY-40A-02D_TARGET-20-PARPPY-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPPY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPPY-40A-02D	DNA	EFO	SRS637520	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPPY-40A-02D A42710 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42710	SRX597957	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPPY-40A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARPPY-40A-02D A42710 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42710_1_lane_dupsFlagged.bam	SRR1395252	@dbgap@:reads/SRP012000/SRS637520/SRX597957/SRR1395252/SRR1395252.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPPY-40A-02D_TARGET-20-PARPPY-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPVZ-09A-02D	DNA	EFO	SRS628710	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPVZ-09A-02D A32211 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32211	SRX574403	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPVZ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARPVZ-09A-02D A32211 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32211_1_lane_dupsFlagged.bam	SRR1344884	@dbgap@:reads/SRP012000/SRS628710/SRX574403/SRR1344884/SRR1344884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPVZ-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPVZ-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-03D	DNA	EFO	SRS628727	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPWL-09A-03D A32212 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32212	SRX574422	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPWL-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARPWL-09A-03D A32212 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32212_1_lane_dupsFlagged.bam	SRR1344841	@dbgap@:reads/SRP012000/SRS628727/SRX574422/SRR1344841/SRR1344841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPWL-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPWL-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-03D	DNA	EFO	SRS628727	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPWL-09A-03D A32212 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32212	SRX574422	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPWL-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARPWL-09A-03D A32212 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32212_1_lane_dupsFlagged.bam	SRR1344841	@dbgap@:reads/SRP012000/SRS628727/SRX574422/SRR1344841/SRR1344841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPWL-09A-03D_TARGET-20-PARPWL-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-03D	DNA	EFO	SRS628727	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPWL-09A-03D A32212 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32212	SRX574422	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPWL-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARPWL-09A-03D A32212 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32212_1_lane_dupsFlagged.bam	SRR1344841	@dbgap@:reads/SRP012000/SRS628727/SRX574422/SRR1344841/SRR1344841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPWL-09A-03D_TARGET-20-PARPWL-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-14A-02D	DNA	EFO	SRS635954	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPWL-14A-02D A42472 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42472	SRX593915	"Specific Capture analysis of normal sample TARGET-20-PARPWL-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARPWL-14A-02D A42472 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42472_1_lane_dupsFlagged.bam	SRR1386398	@dbgap@:reads/SRP012000/SRS635954/SRX593915/SRR1386398/SRR1386398.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPWL-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPWL-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-14A-02D	DNA	EFO	SRS635954	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPWL-14A-02D A42472 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42472	SRX593915	"Specific Capture analysis of normal sample TARGET-20-PARPWL-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARPWL-14A-02D A42472 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42472_1_lane_dupsFlagged.bam	SRR1386398	@dbgap@:reads/SRP012000/SRS635954/SRX593915/SRR1386398/SRR1386398.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPWL-09A-03D_TARGET-20-PARPWL-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-14A-02D	DNA	EFO	SRS635954	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPWL-14A-02D A42472 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42472	SRX593915	"Specific Capture analysis of normal sample TARGET-20-PARPWL-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARPWL-14A-02D A42472 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42472_1_lane_dupsFlagged.bam	SRR1386398	@dbgap@:reads/SRP012000/SRS635954/SRX593915/SRR1386398/SRR1386398.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPWL-09A-03D_TARGET-20-PARPWL-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPZP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPZP-04A-01D	DNA	EFO	SRS637559	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPZP-04A-01D A42711 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42711	SRX597999	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPZP-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARPZP-04A-01D A42711 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42711_1_lane_dupsFlagged.bam	SRR1395292	@dbgap@:reads/SRP012000/SRS637559/SRX597999/SRR1395292/SRR1395292.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPZP-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPZP-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARPZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPZP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPZP-04A-01D	DNA	EFO	SRS637559	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPZP-04A-01D A42711 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42711	SRX597999	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPZP-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARPZP-04A-01D A42711 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42711_1_lane_dupsFlagged.bam	SRR1395292	@dbgap@:reads/SRP012000/SRS637559/SRX597999/SRR1395292/SRR1395292.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPZP-04A-01D_TARGET-20-PARPZP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPZP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPZP-04A-01D	DNA	EFO	SRS637559	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPZP-04A-01D A42711 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42711	SRX597999	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPZP-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARPZP-04A-01D A42711 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42711_1_lane_dupsFlagged.bam	SRR1395292	@dbgap@:reads/SRP012000/SRS637559/SRX597999/SRR1395292/SRR1395292.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPZP-04A-01D_TARGET-20-PARPZP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPZP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPZP-09A-01D	DNA	EFO	SRS635501	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPZP-09A-01D A41724 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41724	SRX593225	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPZP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARPZP-09A-01D A41724 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41724_1_lane_dupsFlagged.bam	SRR1385629	@dbgap@:reads/SRP012000/SRS635501/SRX593225/SRR1385629/SRR1385629.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPZP-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPZP-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARPZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPZP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPZP-09A-01D	DNA	EFO	SRS635501	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPZP-09A-01D A41724 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41724	SRX593225	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPZP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARPZP-09A-01D A41724 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41724_1_lane_dupsFlagged.bam	SRR1385629	@dbgap@:reads/SRP012000/SRS635501/SRX593225/SRR1385629/SRR1385629.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPZP-09A-01D_TARGET-20-PARPZP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPZP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPZP-09A-01D	DNA	EFO	SRS635501	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPZP-09A-01D A41724 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41724	SRX593225	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARPZP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARPZP-09A-01D A41724 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41724_1_lane_dupsFlagged.bam	SRR1385629	@dbgap@:reads/SRP012000/SRS635501/SRX593225/SRR1385629/SRR1385629.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPZP-09A-01D_TARGET-20-PARPZP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPZP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPZP-14A-01D	DNA	EFO	SRS634722	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPZP-14A-01D A41545 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41545	SRX590830	"Specific Capture analysis of normal sample TARGET-20-PARPZP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARPZP-14A-01D A41545 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41545_1_lane_dupsFlagged.bam	SRR1379799	@dbgap@:reads/SRP012000/SRS634722/SRX590830/SRR1379799/SRR1379799.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARPZP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARPZP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARPZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPZP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPZP-14A-01D	DNA	EFO	SRS634722	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPZP-14A-01D A41545 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41545	SRX590830	"Specific Capture analysis of normal sample TARGET-20-PARPZP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARPZP-14A-01D A41545 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41545_1_lane_dupsFlagged.bam	SRR1379799	@dbgap@:reads/SRP012000/SRS634722/SRX590830/SRR1379799/SRR1379799.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPZP-04A-01D_TARGET-20-PARPZP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPZP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPZP-14A-01D	DNA	EFO	SRS634722	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPZP-14A-01D A41545 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41545	SRX590830	"Specific Capture analysis of normal sample TARGET-20-PARPZP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARPZP-14A-01D A41545 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41545_1_lane_dupsFlagged.bam	SRR1379799	@dbgap@:reads/SRP012000/SRS634722/SRX590830/SRR1379799/SRR1379799.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPZP-04A-01D_TARGET-20-PARPZP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARPZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPZP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPZP-14A-01D	DNA	EFO	SRS634722	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPZP-14A-01D A41545 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41545	SRX590830	"Specific Capture analysis of normal sample TARGET-20-PARPZP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARPZP-14A-01D A41545 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41545_1_lane_dupsFlagged.bam	SRR1379799	@dbgap@:reads/SRP012000/SRS634722/SRX590830/SRR1379799/SRR1379799.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPZP-09A-01D_TARGET-20-PARPZP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARPZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARPZP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPZP-14A-01D	DNA	EFO	SRS634722	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPZP-14A-01D A41545 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41545	SRX590830	"Specific Capture analysis of normal sample TARGET-20-PARPZP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARPZP-14A-01D A41545 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41545_1_lane_dupsFlagged.bam	SRR1379799	@dbgap@:reads/SRP012000/SRS634722/SRX590830/SRR1379799/SRR1379799.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARPZP-09A-01D_TARGET-20-PARPZP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARRAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRAD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRAD-09A-01D	DNA	EFO	SRS635471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRAD-09A-01D A41737 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41737	SRX593193	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRAD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRAD-09A-01D A41737 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41737_1_lane_dupsFlagged.bam	SRR1385585	@dbgap@:reads/SRP012000/SRS635471/SRX593193/SRR1385585/SRR1385585.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARRAD-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARRAD-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARRAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRAD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRAD-09A-01D	DNA	EFO	SRS635471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRAD-09A-01D A41737 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41737	SRX593193	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRAD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRAD-09A-01D A41737 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41737_1_lane_dupsFlagged.bam	SRR1385585	@dbgap@:reads/SRP012000/SRS635471/SRX593193/SRR1385585/SRR1385585.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRAD-09A-01D_TARGET-20-PARRAD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARRAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRAD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRAD-09A-01D	DNA	EFO	SRS635471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRAD-09A-01D A41737 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41737	SRX593193	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRAD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRAD-09A-01D A41737 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41737_1_lane_dupsFlagged.bam	SRR1385585	@dbgap@:reads/SRP012000/SRS635471/SRX593193/SRR1385585/SRR1385585.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRAD-09A-01D_TARGET-20-PARRAD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARRAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRAD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRAD-14A-01D	DNA	EFO	SRS634686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRAD-14A-01D A41546 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41546	SRX590786	"Specific Capture analysis of normal sample TARGET-20-PARRAD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRAD-14A-01D A41546 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41546_1_lane_dupsFlagged.bam	SRR1379825	@dbgap@:reads/SRP012000/SRS634686/SRX590786/SRR1379825/SRR1379825.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARRAD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARRAD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARRAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRAD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRAD-14A-01D	DNA	EFO	SRS634686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRAD-14A-01D A41546 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41546	SRX590786	"Specific Capture analysis of normal sample TARGET-20-PARRAD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRAD-14A-01D A41546 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41546_1_lane_dupsFlagged.bam	SRR1379825	@dbgap@:reads/SRP012000/SRS634686/SRX590786/SRR1379825/SRR1379825.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRAD-09A-01D_TARGET-20-PARRAD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARRAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRAD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRAD-14A-01D	DNA	EFO	SRS634686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRAD-14A-01D A41546 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41546	SRX590786	"Specific Capture analysis of normal sample TARGET-20-PARRAD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRAD-14A-01D A41546 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41546_1_lane_dupsFlagged.bam	SRR1379825	@dbgap@:reads/SRP012000/SRS634686/SRX590786/SRR1379825/SRR1379825.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRAD-09A-01D_TARGET-20-PARRAD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARRBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRBK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRBK-09A-01D	DNA	EFO	SRS635619	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRBK-09A-01D A41935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41935	SRX593439	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRBK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARRBK-09A-01D A41935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41935_1_lane_dupsFlagged.bam	SRR1385891	@dbgap@:reads/SRP012000/SRS635619/SRX593439/SRR1385891/SRR1385891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARRBK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARRBK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARRBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRBK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRBK-09A-01D	DNA	EFO	SRS635619	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRBK-09A-01D A41935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41935	SRX593439	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRBK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARRBK-09A-01D A41935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41935_1_lane_dupsFlagged.bam	SRR1385891	@dbgap@:reads/SRP012000/SRS635619/SRX593439/SRR1385891/SRR1385891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRBK-09A-01D_TARGET-20-PARRBK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARRBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRBK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRBK-09A-01D	DNA	EFO	SRS635619	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRBK-09A-01D A41935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41935	SRX593439	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRBK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARRBK-09A-01D A41935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41935_1_lane_dupsFlagged.bam	SRR1385891	@dbgap@:reads/SRP012000/SRS635619/SRX593439/SRR1385891/SRR1385891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRBK-09A-01D_TARGET-20-PARRBK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARRBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRBK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRBK-14A-01D	DNA	EFO	SRS637398	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRBK-14A-01D A42796 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42796	SRX597805	"Specific Capture analysis of normal sample TARGET-20-PARRBK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARRBK-14A-01D A42796 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42796_1_lane_dupsFlagged.bam	SRR1395092	@dbgap@:reads/SRP012000/SRS637398/SRX597805/SRR1395092/SRR1395092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARRBK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARRBK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARRBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRBK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRBK-14A-01D	DNA	EFO	SRS637398	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRBK-14A-01D A42796 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42796	SRX597805	"Specific Capture analysis of normal sample TARGET-20-PARRBK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARRBK-14A-01D A42796 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42796_1_lane_dupsFlagged.bam	SRR1395092	@dbgap@:reads/SRP012000/SRS637398/SRX597805/SRR1395092/SRR1395092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRBK-09A-01D_TARGET-20-PARRBK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARRBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRBK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRBK-14A-01D	DNA	EFO	SRS637398	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRBK-14A-01D A42796 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42796	SRX597805	"Specific Capture analysis of normal sample TARGET-20-PARRBK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARRBK-14A-01D A42796 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42796_1_lane_dupsFlagged.bam	SRR1395092	@dbgap@:reads/SRP012000/SRS637398/SRX597805/SRR1395092/SRR1395092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRBK-09A-01D_TARGET-20-PARRBK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARRDD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRDD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRDD-09A-01D	DNA	EFO	SRS633687	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRDD-09A-01D A33436 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33436	SRX587982	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRDD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARRDD-09A-01D A33436 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33436_1_lane_dupsFlagged.bam	SRR1373845	@dbgap@:reads/SRP012000/SRS633687/SRX587982/SRR1373845/SRR1373845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARRDD-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARRDD-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARRDD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRDD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRDD-09A-01D	DNA	EFO	SRS633687	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRDD-09A-01D A33436 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33436	SRX587982	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRDD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARRDD-09A-01D A33436 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33436_1_lane_dupsFlagged.bam	SRR1373845	@dbgap@:reads/SRP012000/SRS633687/SRX587982/SRR1373845/SRR1373845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRDD-09A-01D_TARGET-20-PARRDD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARRDD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRDD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRDD-09A-01D	DNA	EFO	SRS633687	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRDD-09A-01D A33436 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33436	SRX587982	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRDD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARRDD-09A-01D A33436 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33436_1_lane_dupsFlagged.bam	SRR1373845	@dbgap@:reads/SRP012000/SRS633687/SRX587982/SRR1373845/SRR1373845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRDD-09A-01D_TARGET-20-PARRDD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARRDD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRDD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRDD-14A-01D	DNA	EFO	SRS634706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRDD-14A-01D A41547 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41547	SRX590812	"Specific Capture analysis of normal sample TARGET-20-PARRDD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRDD-14A-01D A41547 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41547_1_lane_dupsFlagged.bam	SRR1379883	@dbgap@:reads/SRP012000/SRS634706/SRX590812/SRR1379883/SRR1379883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARRDD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARRDD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARRDD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRDD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRDD-14A-01D	DNA	EFO	SRS634706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRDD-14A-01D A41547 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41547	SRX590812	"Specific Capture analysis of normal sample TARGET-20-PARRDD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRDD-14A-01D A41547 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41547_1_lane_dupsFlagged.bam	SRR1379883	@dbgap@:reads/SRP012000/SRS634706/SRX590812/SRR1379883/SRR1379883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRDD-09A-01D_TARGET-20-PARRDD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARRDD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRDD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRDD-14A-01D	DNA	EFO	SRS634706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRDD-14A-01D A41547 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41547	SRX590812	"Specific Capture analysis of normal sample TARGET-20-PARRDD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRDD-14A-01D A41547 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41547_1_lane_dupsFlagged.bam	SRR1379883	@dbgap@:reads/SRP012000/SRS634706/SRX590812/SRR1379883/SRR1379883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRDD-09A-01D_TARGET-20-PARRDD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARRFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRFC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRFC-03A-01D	DNA	EFO	SRS633641	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRFC-03A-01D A33371 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33371	SRX587935	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRFC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARRFC-03A-01D A33371 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33371_1_lane_dupsFlagged.bam	SRR1373792	@dbgap@:reads/SRP012000/SRS633641/SRX587935/SRR1373792/SRR1373792.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARRFC-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARRFC-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARRFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRFC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRFC-03A-01D	DNA	EFO	SRS633641	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRFC-03A-01D A33371 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33371	SRX587935	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRFC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARRFC-03A-01D A33371 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33371_1_lane_dupsFlagged.bam	SRR1373792	@dbgap@:reads/SRP012000/SRS633641/SRX587935/SRR1373792/SRR1373792.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRFC-03A-01D_TARGET-20-PARRFC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARRFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRFC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRFC-03A-01D	DNA	EFO	SRS633641	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRFC-03A-01D A33371 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33371	SRX587935	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRFC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARRFC-03A-01D A33371 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33371_1_lane_dupsFlagged.bam	SRR1373792	@dbgap@:reads/SRP012000/SRS633641/SRX587935/SRR1373792/SRR1373792.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRFC-03A-01D_TARGET-20-PARRFC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARRFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRFC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRFC-14A-01D	DNA	EFO	SRS634688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRFC-14A-01D A41548 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41548	SRX590787	"Specific Capture analysis of normal sample TARGET-20-PARRFC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRFC-14A-01D A41548 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41548_1_lane_dupsFlagged.bam	SRR1379864	@dbgap@:reads/SRP012000/SRS634688/SRX590787/SRR1379864/SRR1379864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARRFC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARRFC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARRFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRFC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRFC-14A-01D	DNA	EFO	SRS634688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRFC-14A-01D A41548 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41548	SRX590787	"Specific Capture analysis of normal sample TARGET-20-PARRFC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRFC-14A-01D A41548 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41548_1_lane_dupsFlagged.bam	SRR1379864	@dbgap@:reads/SRP012000/SRS634688/SRX590787/SRR1379864/SRR1379864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRFC-03A-01D_TARGET-20-PARRFC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARRFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRFC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRFC-14A-01D	DNA	EFO	SRS634688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRFC-14A-01D A41548 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41548	SRX590787	"Specific Capture analysis of normal sample TARGET-20-PARRFC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRFC-14A-01D A41548 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41548_1_lane_dupsFlagged.bam	SRR1379864	@dbgap@:reads/SRP012000/SRS634688/SRX590787/SRR1379864/SRR1379864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRFC-03A-01D_TARGET-20-PARRFC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARRHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRHB-03A-01D	DNA	EFO	SRS633622	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRHB-03A-01D A33382 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33382	SRX587916	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRHB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARRHB-03A-01D A33382 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33382_1_lane_dupsFlagged.bam	SRR1373784	@dbgap@:reads/SRP012000/SRS633622/SRX587916/SRR1373784/SRR1373784.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARRHB-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARRHB-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARRHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRHB-03A-01D	DNA	EFO	SRS633622	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRHB-03A-01D A33382 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33382	SRX587916	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRHB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARRHB-03A-01D A33382 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33382_1_lane_dupsFlagged.bam	SRR1373784	@dbgap@:reads/SRP012000/SRS633622/SRX587916/SRR1373784/SRR1373784.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRHB-03A-01D_TARGET-20-PARRHB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARRHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRHB-03A-01D	DNA	EFO	SRS633622	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRHB-03A-01D A33382 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33382	SRX587916	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRHB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARRHB-03A-01D A33382 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33382_1_lane_dupsFlagged.bam	SRR1373784	@dbgap@:reads/SRP012000/SRS633622/SRX587916/SRR1373784/SRR1373784.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRHB-03A-01D_TARGET-20-PARRHB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARRHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRHB-04A-01D	DNA	EFO	SRS637568	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRHB-04A-01D A42739 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42739	SRX598008	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRHB-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARRHB-04A-01D A42739 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42739_1_lane_dupsFlagged.bam	SRR1395230	@dbgap@:reads/SRP012000/SRS637568/SRX598008/SRR1395230/SRR1395230.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARRHB-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARRHB-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARRHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRHB-04A-01D	DNA	EFO	SRS637568	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRHB-04A-01D A42739 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42739	SRX598008	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRHB-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARRHB-04A-01D A42739 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42739_1_lane_dupsFlagged.bam	SRR1395230	@dbgap@:reads/SRP012000/SRS637568/SRX598008/SRR1395230/SRR1395230.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRHB-04A-01D_TARGET-20-PARRHB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARRHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRHB-04A-01D	DNA	EFO	SRS637568	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRHB-04A-01D A42739 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42739	SRX598008	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRHB-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARRHB-04A-01D A42739 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42739_1_lane_dupsFlagged.bam	SRR1395230	@dbgap@:reads/SRP012000/SRS637568/SRX598008/SRR1395230/SRR1395230.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRHB-04A-01D_TARGET-20-PARRHB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARRHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRHB-10A-01D	DNA	EFO	SRS634728	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRHB-10A-01D A41549 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41549	SRX590838	"Specific Capture analysis of normal sample TARGET-20-PARRHB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRHB-10A-01D A41549 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41549_1_lane_dupsFlagged.bam	SRR1379823	@dbgap@:reads/SRP012000/SRS634728/SRX590838/SRR1379823/SRR1379823.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARRHB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARRHB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARRHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRHB-10A-01D	DNA	EFO	SRS634728	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRHB-10A-01D A41549 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41549	SRX590838	"Specific Capture analysis of normal sample TARGET-20-PARRHB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRHB-10A-01D A41549 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41549_1_lane_dupsFlagged.bam	SRR1379823	@dbgap@:reads/SRP012000/SRS634728/SRX590838/SRR1379823/SRR1379823.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRHB-03A-01D_TARGET-20-PARRHB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARRHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRHB-10A-01D	DNA	EFO	SRS634728	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRHB-10A-01D A41549 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41549	SRX590838	"Specific Capture analysis of normal sample TARGET-20-PARRHB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRHB-10A-01D A41549 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41549_1_lane_dupsFlagged.bam	SRR1379823	@dbgap@:reads/SRP012000/SRS634728/SRX590838/SRR1379823/SRR1379823.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRHB-03A-01D_TARGET-20-PARRHB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARRHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRHB-10A-01D	DNA	EFO	SRS634728	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRHB-10A-01D A41549 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41549	SRX590838	"Specific Capture analysis of normal sample TARGET-20-PARRHB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRHB-10A-01D A41549 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41549_1_lane_dupsFlagged.bam	SRR1379823	@dbgap@:reads/SRP012000/SRS634728/SRX590838/SRR1379823/SRR1379823.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRHB-04A-01D_TARGET-20-PARRHB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARRHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRHB-10A-01D	DNA	EFO	SRS634728	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRHB-10A-01D A41549 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41549	SRX590838	"Specific Capture analysis of normal sample TARGET-20-PARRHB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRHB-10A-01D A41549 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41549_1_lane_dupsFlagged.bam	SRR1379823	@dbgap@:reads/SRP012000/SRS634728/SRX590838/SRR1379823/SRR1379823.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRHB-04A-01D_TARGET-20-PARRHB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARRMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRMF-03A-01D	DNA	EFO	SRS635482	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRMF-03A-01D A41760 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41760	SRX593206	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRMF-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRMF-03A-01D A41760 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41760_1_lane_dupsFlagged.bam	SRR1385669	@dbgap@:reads/SRP012000/SRS635482/SRX593206/SRR1385669/SRR1385669.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARRMF-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARRMF-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARRTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRTH-09A-01D	DNA	EFO	SRS635452	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRTH-09A-01D A41761 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41761	SRX593174	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRTH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRTH-09A-01D A41761 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41761_1_lane_dupsFlagged.bam	SRR1385637	@dbgap@:reads/SRP012000/SRS635452/SRX593174/SRR1385637/SRR1385637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARRTH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARRTH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARRTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRTH-09A-01D	DNA	EFO	SRS635452	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRTH-09A-01D A41761 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41761	SRX593174	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRTH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRTH-09A-01D A41761 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41761_1_lane_dupsFlagged.bam	SRR1385637	@dbgap@:reads/SRP012000/SRS635452/SRX593174/SRR1385637/SRR1385637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRTH-09A-01D_TARGET-20-PARRTH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARRTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRTH-09A-01D	DNA	EFO	SRS635452	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRTH-09A-01D A41761 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41761	SRX593174	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRTH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRTH-09A-01D A41761 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41761_1_lane_dupsFlagged.bam	SRR1385637	@dbgap@:reads/SRP012000/SRS635452/SRX593174/SRR1385637/SRR1385637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRTH-09A-01D_TARGET-20-PARRTH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARRTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRTH-14A-01D	DNA	EFO	SRS637424	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRTH-14A-01D A42797 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42797	SRX597833	"Specific Capture analysis of normal sample TARGET-20-PARRTH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARRTH-14A-01D A42797 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42797_1_lane_dupsFlagged.bam	SRR1395101	@dbgap@:reads/SRP012000/SRS637424/SRX597833/SRR1395101/SRR1395101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARRTH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARRTH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARRTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRTH-14A-01D	DNA	EFO	SRS637424	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRTH-14A-01D A42797 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42797	SRX597833	"Specific Capture analysis of normal sample TARGET-20-PARRTH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARRTH-14A-01D A42797 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42797_1_lane_dupsFlagged.bam	SRR1395101	@dbgap@:reads/SRP012000/SRS637424/SRX597833/SRR1395101/SRR1395101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRTH-09A-01D_TARGET-20-PARRTH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARRTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRTH-14A-01D	DNA	EFO	SRS637424	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRTH-14A-01D A42797 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42797	SRX597833	"Specific Capture analysis of normal sample TARGET-20-PARRTH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARRTH-14A-01D A42797 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42797_1_lane_dupsFlagged.bam	SRR1395101	@dbgap@:reads/SRP012000/SRS637424/SRX597833/SRR1395101/SRR1395101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRTH-09A-01D_TARGET-20-PARRTH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARRYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRYL-09A-01D	DNA	EFO	SRS633694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRYL-09A-01D A33395 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33395	SRX587988	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRYL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARRYL-09A-01D A33395 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33395_1_lane_dupsFlagged.bam	SRR1373800	@dbgap@:reads/SRP012000/SRS633694/SRX587988/SRR1373800/SRR1373800.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARRYL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARRYL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARRYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRYL-09A-01D	DNA	EFO	SRS633694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRYL-09A-01D A33395 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33395	SRX587988	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRYL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARRYL-09A-01D A33395 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33395_1_lane_dupsFlagged.bam	SRR1373800	@dbgap@:reads/SRP012000/SRS633694/SRX587988/SRR1373800/SRR1373800.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRYL-09A-01D_TARGET-20-PARRYL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARRYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRYL-09A-01D	DNA	EFO	SRS633694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRYL-09A-01D A33395 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33395	SRX587988	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARRYL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARRYL-09A-01D A33395 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33395_1_lane_dupsFlagged.bam	SRR1373800	@dbgap@:reads/SRP012000/SRS633694/SRX587988/SRR1373800/SRR1373800.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRYL-09A-01D_TARGET-20-PARRYL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARRYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRYL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRYL-14A-01D	DNA	EFO	SRS634744	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRYL-14A-01D A41550 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41550	SRX590861	"Specific Capture analysis of normal sample TARGET-20-PARRYL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRYL-14A-01D A41550 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41550_1_lane_dupsFlagged.bam	SRR1379852	@dbgap@:reads/SRP012000/SRS634744/SRX590861/SRR1379852/SRR1379852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARRYL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARRYL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARRYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRYL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRYL-14A-01D	DNA	EFO	SRS634744	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRYL-14A-01D A41550 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41550	SRX590861	"Specific Capture analysis of normal sample TARGET-20-PARRYL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRYL-14A-01D A41550 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41550_1_lane_dupsFlagged.bam	SRR1379852	@dbgap@:reads/SRP012000/SRS634744/SRX590861/SRR1379852/SRR1379852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRYL-09A-01D_TARGET-20-PARRYL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARRYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARRYL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARRYL-14A-01D	DNA	EFO	SRS634744	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARRYL-14A-01D A41550 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41550	SRX590861	"Specific Capture analysis of normal sample TARGET-20-PARRYL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARRYL-14A-01D A41550 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41550_1_lane_dupsFlagged.bam	SRR1379852	@dbgap@:reads/SRP012000/SRS634744/SRX590861/SRR1379852/SRR1379852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARRYL-09A-01D_TARGET-20-PARRYL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSAA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAA-03A-01D	DNA	EFO	SRS633700	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAA-03A-01D A33372 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33372	SRX587994	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSAA-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARSAA-03A-01D A33372 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33372_1_lane_dupsFlagged.bam	SRR1373793	@dbgap@:reads/SRP012000/SRS633700/SRX587994/SRR1373793/SRR1373793.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSAA-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSAA-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARSAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSAA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAA-03A-01D	DNA	EFO	SRS633700	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAA-03A-01D A33372 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33372	SRX587994	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSAA-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARSAA-03A-01D A33372 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33372_1_lane_dupsFlagged.bam	SRR1373793	@dbgap@:reads/SRP012000/SRS633700/SRX587994/SRR1373793/SRR1373793.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSAA-03A-01D_TARGET-20-PARSAA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSAA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAA-03A-01D	DNA	EFO	SRS633700	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAA-03A-01D A33372 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33372	SRX587994	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSAA-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARSAA-03A-01D A33372 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33372_1_lane_dupsFlagged.bam	SRR1373793	@dbgap@:reads/SRP012000/SRS633700/SRX587994/SRR1373793/SRR1373793.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSAA-03A-01D_TARGET-20-PARSAA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSAA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAA-14A-01D	DNA	EFO	SRS634716	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAA-14A-01D A41551 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41551	SRX590820	"Specific Capture analysis of normal sample TARGET-20-PARSAA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARSAA-14A-01D A41551 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41551_1_lane_dupsFlagged.bam	SRR1379830	@dbgap@:reads/SRP012000/SRS634716/SRX590820/SRR1379830/SRR1379830.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSAA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSAA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARSAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSAA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAA-14A-01D	DNA	EFO	SRS634716	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAA-14A-01D A41551 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41551	SRX590820	"Specific Capture analysis of normal sample TARGET-20-PARSAA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARSAA-14A-01D A41551 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41551_1_lane_dupsFlagged.bam	SRR1379830	@dbgap@:reads/SRP012000/SRS634716/SRX590820/SRR1379830/SRR1379830.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSAA-03A-01D_TARGET-20-PARSAA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSAA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAA-14A-01D	DNA	EFO	SRS634716	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAA-14A-01D A41551 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41551	SRX590820	"Specific Capture analysis of normal sample TARGET-20-PARSAA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARSAA-14A-01D A41551 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41551_1_lane_dupsFlagged.bam	SRR1379830	@dbgap@:reads/SRP012000/SRS634716/SRX590820/SRR1379830/SRR1379830.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSAA-03A-01D_TARGET-20-PARSAA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-04A-01D	DNA	EFO	SRS270741	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAN-04A-01D A42245 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42245	SRX597696	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSAN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARSAN-04A-01D A42245 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42245_1_lane_dupsFlagged.bam	SRR1395010	@dbgap@:reads/SRP012000/SRS270741/SRX597696/SRR1395010/SRR1395010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSAN-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSAN-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-04A-01D	DNA	EFO	SRS270741	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAN-04A-01D A42245 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42245	SRX597696	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSAN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARSAN-04A-01D A42245 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42245_1_lane_dupsFlagged.bam	SRR1395010	@dbgap@:reads/SRP012000/SRS270741/SRX597696/SRR1395010/SRR1395010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSAN-04A-01D_TARGET-20-PARSAN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-04A-01D	DNA	EFO	SRS270741	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAN-04A-01D A42245 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42245	SRX597696	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSAN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARSAN-04A-01D A42245 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42245_1_lane_dupsFlagged.bam	SRR1395010	@dbgap@:reads/SRP012000/SRS270741/SRX597696/SRR1395010/SRR1395010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSAN-04A-01D_TARGET-20-PARSAN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-09A-01D	DNA	EFO	SRS270742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAN-09A-01D A31250 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31250	SRX573378	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSAN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARSAN-09A-01D A31250 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31250_1_lane_dupsFlagged.bam	SRR1342679	@dbgap@:reads/SRP012000/SRS270742/SRX573378/SRR1342679/SRR1342679.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSAN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSAN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-09A-01D	DNA	EFO	SRS270742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAN-09A-01D A31250 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31250	SRX573378	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSAN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARSAN-09A-01D A31250 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31250_1_lane_dupsFlagged.bam	SRR1342679	@dbgap@:reads/SRP012000/SRS270742/SRX573378/SRR1342679/SRR1342679.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSAN-09A-01D_TARGET-20-PARSAN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-09A-01D	DNA	EFO	SRS270742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAN-09A-01D A31250 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31250	SRX573378	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSAN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARSAN-09A-01D A31250 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31250_1_lane_dupsFlagged.bam	SRR1342679	@dbgap@:reads/SRP012000/SRS270742/SRX573378/SRR1342679/SRR1342679.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSAN-09A-01D_TARGET-20-PARSAN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-01D	DNA	EFO	SRS637502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAN-14A-01D A42925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42925	SRX597933	"Specific Capture analysis of normal sample TARGET-20-PARSAN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARSAN-14A-01D A42925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42925_1_lane_dupsFlagged.bam	SRR1395145	@dbgap@:reads/SRP012000/SRS637502/SRX597933/SRR1395145/SRR1395145.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSAN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSAN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-01D	DNA	EFO	SRS637502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAN-14A-01D A42925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42925	SRX597933	"Specific Capture analysis of normal sample TARGET-20-PARSAN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARSAN-14A-01D A42925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42925_1_lane_dupsFlagged.bam	SRR1395145	@dbgap@:reads/SRP012000/SRS637502/SRX597933/SRR1395145/SRR1395145.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSAN-04A-01D_TARGET-20-PARSAN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-01D	DNA	EFO	SRS637502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAN-14A-01D A42925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42925	SRX597933	"Specific Capture analysis of normal sample TARGET-20-PARSAN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARSAN-14A-01D A42925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42925_1_lane_dupsFlagged.bam	SRR1395145	@dbgap@:reads/SRP012000/SRS637502/SRX597933/SRR1395145/SRR1395145.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSAN-04A-01D_TARGET-20-PARSAN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-01D	DNA	EFO	SRS637502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAN-14A-01D A42925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42925	SRX597933	"Specific Capture analysis of normal sample TARGET-20-PARSAN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARSAN-14A-01D A42925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42925_1_lane_dupsFlagged.bam	SRR1395145	@dbgap@:reads/SRP012000/SRS637502/SRX597933/SRR1395145/SRR1395145.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSAN-09A-01D_TARGET-20-PARSAN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-14A-01D	DNA	EFO	SRS637502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAN-14A-01D A42925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42925	SRX597933	"Specific Capture analysis of normal sample TARGET-20-PARSAN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARSAN-14A-01D A42925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42925_1_lane_dupsFlagged.bam	SRR1395145	@dbgap@:reads/SRP012000/SRS637502/SRX597933/SRR1395145/SRR1395145.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSAN-09A-01D_TARGET-20-PARSAN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSFK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSFK-04A-01D	DNA	EFO	SRS637545	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSFK-04A-01D A42727 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42727	SRX597983	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSFK-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARSFK-04A-01D A42727 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42727_1_lane_dupsFlagged.bam	SRR1395256	@dbgap@:reads/SRP012000/SRS637545/SRX597983/SRR1395256/SRR1395256.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSFK-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSFK-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARSFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSFK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSFK-04A-01D	DNA	EFO	SRS637545	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSFK-04A-01D A42727 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42727	SRX597983	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSFK-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARSFK-04A-01D A42727 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42727_1_lane_dupsFlagged.bam	SRR1395256	@dbgap@:reads/SRP012000/SRS637545/SRX597983/SRR1395256/SRR1395256.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSFK-04A-01D_TARGET-20-PARSFK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSFK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSFK-04A-01D	DNA	EFO	SRS637545	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSFK-04A-01D A42727 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42727	SRX597983	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSFK-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARSFK-04A-01D A42727 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42727_1_lane_dupsFlagged.bam	SRR1395256	@dbgap@:reads/SRP012000/SRS637545/SRX597983/SRR1395256/SRR1395256.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSFK-04A-01D_TARGET-20-PARSFK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSFK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSFK-09A-01D	DNA	EFO	SRS633630	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSFK-09A-01D A33396 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33396	SRX587924	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSFK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARSFK-09A-01D A33396 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33396_1_lane_dupsFlagged.bam	SRR1373791	@dbgap@:reads/SRP012000/SRS633630/SRX587924/SRR1373791/SRR1373791.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSFK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSFK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARSFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSFK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSFK-09A-01D	DNA	EFO	SRS633630	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSFK-09A-01D A33396 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33396	SRX587924	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSFK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARSFK-09A-01D A33396 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33396_1_lane_dupsFlagged.bam	SRR1373791	@dbgap@:reads/SRP012000/SRS633630/SRX587924/SRR1373791/SRR1373791.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSFK-09A-01D_TARGET-20-PARSFK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSFK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSFK-09A-01D	DNA	EFO	SRS633630	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSFK-09A-01D A33396 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33396	SRX587924	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSFK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARSFK-09A-01D A33396 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33396_1_lane_dupsFlagged.bam	SRR1373791	@dbgap@:reads/SRP012000/SRS633630/SRX587924/SRR1373791/SRR1373791.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSFK-09A-01D_TARGET-20-PARSFK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSFK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSFK-14A-01D	DNA	EFO	SRS635937	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSFK-14A-01D A42473 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42473	SRX593898	"Specific Capture analysis of normal sample TARGET-20-PARSFK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARSFK-14A-01D A42473 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42473_1_lane_dupsFlagged.bam	SRR1386348	@dbgap@:reads/SRP012000/SRS635937/SRX593898/SRR1386348/SRR1386348.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSFK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSFK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARSFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSFK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSFK-14A-01D	DNA	EFO	SRS635937	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSFK-14A-01D A42473 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42473	SRX593898	"Specific Capture analysis of normal sample TARGET-20-PARSFK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARSFK-14A-01D A42473 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42473_1_lane_dupsFlagged.bam	SRR1386348	@dbgap@:reads/SRP012000/SRS635937/SRX593898/SRR1386348/SRR1386348.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSFK-04A-01D_TARGET-20-PARSFK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSFK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSFK-14A-01D	DNA	EFO	SRS635937	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSFK-14A-01D A42473 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42473	SRX593898	"Specific Capture analysis of normal sample TARGET-20-PARSFK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARSFK-14A-01D A42473 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42473_1_lane_dupsFlagged.bam	SRR1386348	@dbgap@:reads/SRP012000/SRS635937/SRX593898/SRR1386348/SRR1386348.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSFK-04A-01D_TARGET-20-PARSFK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSFK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSFK-14A-01D	DNA	EFO	SRS635937	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSFK-14A-01D A42473 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42473	SRX593898	"Specific Capture analysis of normal sample TARGET-20-PARSFK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARSFK-14A-01D A42473 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42473_1_lane_dupsFlagged.bam	SRR1386348	@dbgap@:reads/SRP012000/SRS635937/SRX593898/SRR1386348/SRR1386348.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSFK-09A-01D_TARGET-20-PARSFK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSFK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSFK-14A-01D	DNA	EFO	SRS635937	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSFK-14A-01D A42473 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42473	SRX593898	"Specific Capture analysis of normal sample TARGET-20-PARSFK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARSFK-14A-01D A42473 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42473_1_lane_dupsFlagged.bam	SRR1386348	@dbgap@:reads/SRP012000/SRS635937/SRX593898/SRR1386348/SRR1386348.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSFK-09A-01D_TARGET-20-PARSFK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSGE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSGE-03A-01D	DNA	EFO	SRS633695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSGE-03A-01D A33397 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33397	SRX587989	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSGE-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARSGE-03A-01D A33397 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33397_1_lane_dupsFlagged.bam	SRR1373768	@dbgap@:reads/SRP012000/SRS633695/SRX587989/SRR1373768/SRR1373768.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSGE-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSGE-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARSGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSGE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSGE-03A-01D	DNA	EFO	SRS633695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSGE-03A-01D A33397 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33397	SRX587989	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSGE-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARSGE-03A-01D A33397 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33397_1_lane_dupsFlagged.bam	SRR1373768	@dbgap@:reads/SRP012000/SRS633695/SRX587989/SRR1373768/SRR1373768.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSGE-03A-01D_TARGET-20-PARSGE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSGE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSGE-03A-01D	DNA	EFO	SRS633695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSGE-03A-01D A33397 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33397	SRX587989	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSGE-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARSGE-03A-01D A33397 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33397_1_lane_dupsFlagged.bam	SRR1373768	@dbgap@:reads/SRP012000/SRS633695/SRX587989/SRR1373768/SRR1373768.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSGE-03A-01D_TARGET-20-PARSGE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSGE-14A-01D	DNA	EFO	SRS635879	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSGE-14A-01D A42474 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42474	SRX593839	"Specific Capture analysis of normal sample TARGET-20-PARSGE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARSGE-14A-01D A42474 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42474_1_lane_dupsFlagged.bam	SRR1386326	@dbgap@:reads/SRP012000/SRS635879/SRX593839/SRR1386326/SRR1386326.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSGE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSGE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARSGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSGE-14A-01D	DNA	EFO	SRS635879	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSGE-14A-01D A42474 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42474	SRX593839	"Specific Capture analysis of normal sample TARGET-20-PARSGE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARSGE-14A-01D A42474 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42474_1_lane_dupsFlagged.bam	SRR1386326	@dbgap@:reads/SRP012000/SRS635879/SRX593839/SRR1386326/SRR1386326.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSGE-03A-01D_TARGET-20-PARSGE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSGE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSGE-14A-01D	DNA	EFO	SRS635879	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSGE-14A-01D A42474 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42474	SRX593839	"Specific Capture analysis of normal sample TARGET-20-PARSGE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARSGE-14A-01D A42474 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42474_1_lane_dupsFlagged.bam	SRR1386326	@dbgap@:reads/SRP012000/SRS635879/SRX593839/SRR1386326/SRR1386326.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSGE-03A-01D_TARGET-20-PARSGE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSGS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSGS-09A-01D	DNA	EFO	SRS633621	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSGS-09A-01D A33398 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33398	SRX587915	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSGS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARSGS-09A-01D A33398 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33398_1_lane_dupsFlagged.bam	SRR1373855	@dbgap@:reads/SRP012000/SRS633621/SRX587915/SRR1373855/SRR1373855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSGS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSGS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARSGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSGS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSGS-09A-01D	DNA	EFO	SRS633621	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSGS-09A-01D A33398 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33398	SRX587915	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSGS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARSGS-09A-01D A33398 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33398_1_lane_dupsFlagged.bam	SRR1373855	@dbgap@:reads/SRP012000/SRS633621/SRX587915/SRR1373855/SRR1373855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSGS-09A-01D_TARGET-20-PARSGS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSGS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSGS-09A-01D	DNA	EFO	SRS633621	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSGS-09A-01D A33398 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33398	SRX587915	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSGS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARSGS-09A-01D A33398 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33398_1_lane_dupsFlagged.bam	SRR1373855	@dbgap@:reads/SRP012000/SRS633621/SRX587915/SRR1373855/SRR1373855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSGS-09A-01D_TARGET-20-PARSGS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSGS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSGS-14A-01D	DNA	EFO	SRS634713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSGS-14A-01D A41552 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41552	SRX590819	"Specific Capture analysis of normal sample TARGET-20-PARSGS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARSGS-14A-01D A41552 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41552_1_lane_dupsFlagged.bam	SRR1379843	@dbgap@:reads/SRP012000/SRS634713/SRX590819/SRR1379843/SRR1379843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSGS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSGS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARSGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSGS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSGS-14A-01D	DNA	EFO	SRS634713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSGS-14A-01D A41552 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41552	SRX590819	"Specific Capture analysis of normal sample TARGET-20-PARSGS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARSGS-14A-01D A41552 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41552_1_lane_dupsFlagged.bam	SRR1379843	@dbgap@:reads/SRP012000/SRS634713/SRX590819/SRR1379843/SRR1379843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSGS-09A-01D_TARGET-20-PARSGS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSGS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSGS-14A-01D	DNA	EFO	SRS634713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSGS-14A-01D A41552 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41552	SRX590819	"Specific Capture analysis of normal sample TARGET-20-PARSGS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARSGS-14A-01D A41552 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41552_1_lane_dupsFlagged.bam	SRR1379843	@dbgap@:reads/SRP012000/SRS634713/SRX590819/SRR1379843/SRR1379843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSGS-09A-01D_TARGET-20-PARSGS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-01D	DNA	EFO	SRS628747	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSHM-03A-01D A32213 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32213	SRX574443	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSHM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARSHM-03A-01D A32213 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32213_1_lane_dupsFlagged.bam	SRR1344909	@dbgap@:reads/SRP012000/SRS628747/SRX574443/SRR1344909/SRR1344909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSHM-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSHM-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-01D	DNA	EFO	SRS628747	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSHM-03A-01D A32213 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32213	SRX574443	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSHM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARSHM-03A-01D A32213 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32213_1_lane_dupsFlagged.bam	SRR1344909	@dbgap@:reads/SRP012000/SRS628747/SRX574443/SRR1344909/SRR1344909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSHM-03A-01D_TARGET-20-PARSHM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-01D	DNA	EFO	SRS628747	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSHM-03A-01D A32213 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32213	SRX574443	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSHM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARSHM-03A-01D A32213 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32213_1_lane_dupsFlagged.bam	SRR1344909	@dbgap@:reads/SRP012000/SRS628747/SRX574443/SRR1344909/SRR1344909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSHM-03A-01D_TARGET-20-PARSHM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-04A-02D	DNA	EFO	SRS637551	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSHM-04A-02D A42728 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42728	SRX597990	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSHM-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARSHM-04A-02D A42728 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42728_1_lane_dupsFlagged.bam	SRR1395261	@dbgap@:reads/SRP012000/SRS637551/SRX597990/SRR1395261/SRR1395261.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSHM-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSHM-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-04A-02D	DNA	EFO	SRS637551	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSHM-04A-02D A42728 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42728	SRX597990	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSHM-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARSHM-04A-02D A42728 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42728_1_lane_dupsFlagged.bam	SRR1395261	@dbgap@:reads/SRP012000/SRS637551/SRX597990/SRR1395261/SRR1395261.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSHM-04A-02D_TARGET-20-PARSHM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-04A-02D	DNA	EFO	SRS637551	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSHM-04A-02D A42728 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42728	SRX597990	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSHM-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARSHM-04A-02D A42728 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42728_1_lane_dupsFlagged.bam	SRR1395261	@dbgap@:reads/SRP012000/SRS637551/SRX597990/SRR1395261/SRR1395261.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSHM-04A-02D_TARGET-20-PARSHM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSHM-14A-01D A41553 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41553	SRX590800	"Specific Capture analysis of normal sample TARGET-20-PARSHM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARSHM-14A-01D A41553 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41553_1_lane_dupsFlagged.bam	SRR1379826	@dbgap@:reads/SRP012000/SRS270746/SRX590800/SRR1379826/SRR1379826.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSHM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSHM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSHM-14A-01D A41553 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41553	SRX590800	"Specific Capture analysis of normal sample TARGET-20-PARSHM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARSHM-14A-01D A41553 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41553_1_lane_dupsFlagged.bam	SRR1379826	@dbgap@:reads/SRP012000/SRS270746/SRX590800/SRR1379826/SRR1379826.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSHM-03A-01D_TARGET-20-PARSHM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSHM-14A-01D A41553 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41553	SRX590800	"Specific Capture analysis of normal sample TARGET-20-PARSHM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARSHM-14A-01D A41553 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41553_1_lane_dupsFlagged.bam	SRR1379826	@dbgap@:reads/SRP012000/SRS270746/SRX590800/SRR1379826/SRR1379826.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSHM-03A-01D_TARGET-20-PARSHM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSHM-14A-01D A41553 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41553	SRX590800	"Specific Capture analysis of normal sample TARGET-20-PARSHM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARSHM-14A-01D A41553 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41553_1_lane_dupsFlagged.bam	SRR1379826	@dbgap@:reads/SRP012000/SRS270746/SRX590800/SRR1379826/SRR1379826.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSHM-04A-02D_TARGET-20-PARSHM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-14A-01D	DNA	EFO	SRS270746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSHM-14A-01D A41553 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41553	SRX590800	"Specific Capture analysis of normal sample TARGET-20-PARSHM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARSHM-14A-01D A41553 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41553_1_lane_dupsFlagged.bam	SRR1379826	@dbgap@:reads/SRP012000/SRS270746/SRX590800/SRR1379826/SRR1379826.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSHM-04A-02D_TARGET-20-PARSHM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSIN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSIN-04A-01D	DNA	EFO	SRS637329	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSIN-04A-01D A42228 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42228	SRX597710	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSIN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARSIN-04A-01D A42228 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42228_1_lane_dupsFlagged.bam	SRR1394970	@dbgap@:reads/SRP012000/SRS637329/SRX597710/SRR1394970/SRR1394970.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSIN-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSIN-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARSIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSIN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSIN-04A-01D	DNA	EFO	SRS637329	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSIN-04A-01D A42228 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42228	SRX597710	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSIN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARSIN-04A-01D A42228 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42228_1_lane_dupsFlagged.bam	SRR1394970	@dbgap@:reads/SRP012000/SRS637329/SRX597710/SRR1394970/SRR1394970.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSIN-04A-01D_TARGET-20-PARSIN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSIN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSIN-04A-01D	DNA	EFO	SRS637329	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSIN-04A-01D A42228 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42228	SRX597710	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSIN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARSIN-04A-01D A42228 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42228_1_lane_dupsFlagged.bam	SRR1394970	@dbgap@:reads/SRP012000/SRS637329/SRX597710/SRR1394970/SRR1394970.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSIN-04A-01D_TARGET-20-PARSIN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSIN-09A-01D	DNA	EFO	SRS633705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSIN-09A-01D A33437 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33437	SRX587999	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSIN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARSIN-09A-01D A33437 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33437_1_lane_dupsFlagged.bam	SRR1373783	@dbgap@:reads/SRP012000/SRS633705/SRX587999/SRR1373783/SRR1373783.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSIN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSIN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARSIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSIN-09A-01D	DNA	EFO	SRS633705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSIN-09A-01D A33437 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33437	SRX587999	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSIN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARSIN-09A-01D A33437 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33437_1_lane_dupsFlagged.bam	SRR1373783	@dbgap@:reads/SRP012000/SRS633705/SRX587999/SRR1373783/SRR1373783.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSIN-09A-01D_TARGET-20-PARSIN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSIN-09A-01D	DNA	EFO	SRS633705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSIN-09A-01D A33437 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33437	SRX587999	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSIN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARSIN-09A-01D A33437 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33437_1_lane_dupsFlagged.bam	SRR1373783	@dbgap@:reads/SRP012000/SRS633705/SRX587999/SRR1373783/SRR1373783.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSIN-09A-01D_TARGET-20-PARSIN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSIN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSIN-14A-01D	DNA	EFO	SRS634705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSIN-14A-01D A41554 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41554	SRX590811	"Specific Capture analysis of normal sample TARGET-20-PARSIN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARSIN-14A-01D A41554 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41554_1_lane_dupsFlagged.bam	SRR1379811	@dbgap@:reads/SRP012000/SRS634705/SRX590811/SRR1379811/SRR1379811.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSIN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSIN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARSIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSIN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSIN-14A-01D	DNA	EFO	SRS634705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSIN-14A-01D A41554 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41554	SRX590811	"Specific Capture analysis of normal sample TARGET-20-PARSIN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARSIN-14A-01D A41554 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41554_1_lane_dupsFlagged.bam	SRR1379811	@dbgap@:reads/SRP012000/SRS634705/SRX590811/SRR1379811/SRR1379811.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSIN-04A-01D_TARGET-20-PARSIN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSIN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSIN-14A-01D	DNA	EFO	SRS634705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSIN-14A-01D A41554 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41554	SRX590811	"Specific Capture analysis of normal sample TARGET-20-PARSIN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARSIN-14A-01D A41554 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41554_1_lane_dupsFlagged.bam	SRR1379811	@dbgap@:reads/SRP012000/SRS634705/SRX590811/SRR1379811/SRR1379811.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSIN-04A-01D_TARGET-20-PARSIN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSIN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSIN-14A-01D	DNA	EFO	SRS634705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSIN-14A-01D A41554 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41554	SRX590811	"Specific Capture analysis of normal sample TARGET-20-PARSIN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARSIN-14A-01D A41554 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41554_1_lane_dupsFlagged.bam	SRR1379811	@dbgap@:reads/SRP012000/SRS634705/SRX590811/SRR1379811/SRR1379811.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSIN-09A-01D_TARGET-20-PARSIN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARSIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSIN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSIN-14A-01D	DNA	EFO	SRS634705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSIN-14A-01D A41554 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41554	SRX590811	"Specific Capture analysis of normal sample TARGET-20-PARSIN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARSIN-14A-01D A41554 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41554_1_lane_dupsFlagged.bam	SRR1379811	@dbgap@:reads/SRP012000/SRS634705/SRX590811/SRR1379811/SRR1379811.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARSIN-09A-01D_TARGET-20-PARSIN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARSRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSRR-09A-01D	DNA	EFO	SRS633683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSRR-09A-01D A33438 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33438	SRX587977	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSRR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARSRR-09A-01D A33438 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33438_1_lane_dupsFlagged.bam	SRR1373843	@dbgap@:reads/SRP012000/SRS633683/SRX587977/SRR1373843/SRR1373843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSRR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSRR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARSXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARSXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSXZ-03A-01D	DNA	EFO	SRS635447	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSXZ-03A-01D A41762 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41762	SRX593169	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARSXZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARSXZ-03A-01D A41762 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41762_1_lane_dupsFlagged.bam	SRR1385609	@dbgap@:reads/SRP012000/SRS635447/SRX593169/SRR1385609/SRR1385609.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARSXZ-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARSXZ-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-01D	DNA	EFO	SRS301104	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-04A-01D A42215 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42215	SRX597709	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTAL-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARTAL-04A-01D A42215 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42215_1_lane_dupsFlagged.bam	SRR1395007	@dbgap@:reads/SRP012000/SRS301104/SRX597709/SRR1395007/SRR1395007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARTAL-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARTAL-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-01D	DNA	EFO	SRS301104	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-04A-01D A42215 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42215	SRX597709	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTAL-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARTAL-04A-01D A42215 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42215_1_lane_dupsFlagged.bam	SRR1395007	@dbgap@:reads/SRP012000/SRS301104/SRX597709/SRR1395007/SRR1395007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTAL-04A-01D_TARGET-20-PARTAL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-01D	DNA	EFO	SRS301104	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-04A-01D A42215 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42215	SRX597709	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTAL-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARTAL-04A-01D A42215 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42215_1_lane_dupsFlagged.bam	SRR1395007	@dbgap@:reads/SRP012000/SRS301104/SRX597709/SRR1395007/SRR1395007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTAL-04A-01D_TARGET-20-PARTAL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-02D	DNA	EFO	SRS628751	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-09A-02D A32214 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32214	SRX574447	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTAL-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARTAL-09A-02D A32214 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32214_1_lane_dupsFlagged.bam	SRR1344916	@dbgap@:reads/SRP012000/SRS628751/SRX574447/SRR1344916/SRR1344916.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARTAL-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARTAL-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-02D	DNA	EFO	SRS628751	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-09A-02D A32214 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32214	SRX574447	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTAL-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARTAL-09A-02D A32214 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32214_1_lane_dupsFlagged.bam	SRR1344916	@dbgap@:reads/SRP012000/SRS628751/SRX574447/SRR1344916/SRR1344916.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTAL-09A-02D_TARGET-20-PARTAL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-02D	DNA	EFO	SRS628751	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-09A-02D A32214 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32214	SRX574447	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTAL-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARTAL-09A-02D A32214 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32214_1_lane_dupsFlagged.bam	SRR1344916	@dbgap@:reads/SRP012000/SRS628751/SRX574447/SRR1344916/SRR1344916.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTAL-09A-02D_TARGET-20-PARTAL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-01D	DNA	EFO	SRS634711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-14A-01D A41555 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41555	SRX590817	"Specific Capture analysis of normal sample TARGET-20-PARTAL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTAL-14A-01D A41555 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41555_1_lane_dupsFlagged.bam	SRR1379836	@dbgap@:reads/SRP012000/SRS634711/SRX590817/SRR1379836/SRR1379836.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARTAL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARTAL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-01D	DNA	EFO	SRS634711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-14A-01D A41555 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41555	SRX590817	"Specific Capture analysis of normal sample TARGET-20-PARTAL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTAL-14A-01D A41555 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41555_1_lane_dupsFlagged.bam	SRR1379836	@dbgap@:reads/SRP012000/SRS634711/SRX590817/SRR1379836/SRR1379836.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTAL-04A-01D_TARGET-20-PARTAL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-01D	DNA	EFO	SRS634711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-14A-01D A41555 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41555	SRX590817	"Specific Capture analysis of normal sample TARGET-20-PARTAL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTAL-14A-01D A41555 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41555_1_lane_dupsFlagged.bam	SRR1379836	@dbgap@:reads/SRP012000/SRS634711/SRX590817/SRR1379836/SRR1379836.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTAL-04A-01D_TARGET-20-PARTAL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-01D	DNA	EFO	SRS634711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-14A-01D A41555 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41555	SRX590817	"Specific Capture analysis of normal sample TARGET-20-PARTAL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTAL-14A-01D A41555 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41555_1_lane_dupsFlagged.bam	SRR1379836	@dbgap@:reads/SRP012000/SRS634711/SRX590817/SRR1379836/SRR1379836.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTAL-09A-02D_TARGET-20-PARTAL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-14A-01D	DNA	EFO	SRS634711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-14A-01D A41555 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41555	SRX590817	"Specific Capture analysis of normal sample TARGET-20-PARTAL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTAL-14A-01D A41555 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41555_1_lane_dupsFlagged.bam	SRR1379836	@dbgap@:reads/SRP012000/SRS634711/SRX590817/SRR1379836/SRR1379836.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTAL-09A-02D_TARGET-20-PARTAL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARTBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARTBN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTBN-03A-01D	DNA	EFO	SRS628960	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTBN-03A-01D A32328 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32328	SRX575017	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTBN-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARTBN-03A-01D A32328 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32328_1_lane_dupsFlagged.bam	SRR1346152	@dbgap@:reads/SRP012000/SRS628960/SRX575017/SRR1346152/SRR1346152.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARTBN-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARTBN-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARTST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTST-09A-04D	DNA	EFO	SRS628313	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTST-09A-04D A31211 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31211	SRX573383	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTST-09A-04D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARTST-09A-04D A31211 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31211_1_lane_dupsFlagged.bam	SRR1342695	@dbgap@:reads/SRP012000/SRS628313/SRX573383/SRR1342695/SRR1342695.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARTST-09A-04D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARTST-09A-04D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARTST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTST-09A-04D	DNA	EFO	SRS628313	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTST-09A-04D A31211 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31211	SRX573383	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTST-09A-04D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARTST-09A-04D A31211 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31211_1_lane_dupsFlagged.bam	SRR1342695	@dbgap@:reads/SRP012000/SRS628313/SRX573383/SRR1342695/SRR1342695.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTST-09A-04D_TARGET-20-PARTST-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARTST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTST-09A-04D	DNA	EFO	SRS628313	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTST-09A-04D A31211 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31211	SRX573383	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTST-09A-04D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARTST-09A-04D A31211 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31211_1_lane_dupsFlagged.bam	SRR1342695	@dbgap@:reads/SRP012000/SRS628313/SRX573383/SRR1342695/SRR1342695.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTST-09A-04D_TARGET-20-PARTST-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARTST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTST-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTST-14A-01D	DNA	EFO	SRS634703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTST-14A-01D A41556 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41556	SRX590808	"Specific Capture analysis of normal sample TARGET-20-PARTST-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTST-14A-01D A41556 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41556_1_lane_dupsFlagged.bam	SRR1379838	@dbgap@:reads/SRP012000/SRS634703/SRX590808/SRR1379838/SRR1379838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARTST-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARTST-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARTST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTST-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTST-14A-01D	DNA	EFO	SRS634703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTST-14A-01D A41556 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41556	SRX590808	"Specific Capture analysis of normal sample TARGET-20-PARTST-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTST-14A-01D A41556 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41556_1_lane_dupsFlagged.bam	SRR1379838	@dbgap@:reads/SRP012000/SRS634703/SRX590808/SRR1379838/SRR1379838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTST-09A-04D_TARGET-20-PARTST-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARTST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTST-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTST-14A-01D	DNA	EFO	SRS634703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTST-14A-01D A41556 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41556	SRX590808	"Specific Capture analysis of normal sample TARGET-20-PARTST-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTST-14A-01D A41556 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41556_1_lane_dupsFlagged.bam	SRR1379838	@dbgap@:reads/SRP012000/SRS634703/SRX590808/SRR1379838/SRR1379838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTST-09A-04D_TARGET-20-PARTST-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARTVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARTVG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTVG-09A-01D	DNA	EFO	SRS635507	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTVG-09A-01D A41763 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41763	SRX593229	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTVG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTVG-09A-01D A41763 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41763_1_lane_dupsFlagged.bam	SRR1385590	@dbgap@:reads/SRP012000/SRS635507/SRX593229/SRR1385590/SRR1385590.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARTVG-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARTVG-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARTVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARTVG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTVG-09A-01D	DNA	EFO	SRS635507	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTVG-09A-01D A41763 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41763	SRX593229	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTVG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTVG-09A-01D A41763 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41763_1_lane_dupsFlagged.bam	SRR1385590	@dbgap@:reads/SRP012000/SRS635507/SRX593229/SRR1385590/SRR1385590.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTVG-09A-01D_TARGET-20-PARTVG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARTVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARTVG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTVG-09A-01D	DNA	EFO	SRS635507	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTVG-09A-01D A41763 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41763	SRX593229	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTVG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTVG-09A-01D A41763 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41763_1_lane_dupsFlagged.bam	SRR1385590	@dbgap@:reads/SRP012000/SRS635507/SRX593229/SRR1385590/SRR1385590.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTVG-09A-01D_TARGET-20-PARTVG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARTVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARTVG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTVG-14A-01D	DNA	EFO	SRS634693	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTVG-14A-01D A41557 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41557	SRX590793	"Specific Capture analysis of normal sample TARGET-20-PARTVG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTVG-14A-01D A41557 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41557_1_lane_dupsFlagged.bam	SRR1379833	@dbgap@:reads/SRP012000/SRS634693/SRX590793/SRR1379833/SRR1379833.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARTVG-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARTVG-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARTVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARTVG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTVG-14A-01D	DNA	EFO	SRS634693	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTVG-14A-01D A41557 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41557	SRX590793	"Specific Capture analysis of normal sample TARGET-20-PARTVG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTVG-14A-01D A41557 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41557_1_lane_dupsFlagged.bam	SRR1379833	@dbgap@:reads/SRP012000/SRS634693/SRX590793/SRR1379833/SRR1379833.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTVG-09A-01D_TARGET-20-PARTVG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARTVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARTVG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTVG-14A-01D	DNA	EFO	SRS634693	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTVG-14A-01D A41557 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41557	SRX590793	"Specific Capture analysis of normal sample TARGET-20-PARTVG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTVG-14A-01D A41557 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41557_1_lane_dupsFlagged.bam	SRR1379833	@dbgap@:reads/SRP012000/SRS634693/SRX590793/SRR1379833/SRR1379833.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTVG-09A-01D_TARGET-20-PARTVG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARTWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARTWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTWN-09A-01D	DNA	EFO	SRS633664	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTWN-09A-01D A33373 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33373	SRX587958	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTWN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARTWN-09A-01D A33373 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33373_1_lane_dupsFlagged.bam	SRR1373794	@dbgap@:reads/SRP012000/SRS633664/SRX587958/SRR1373794/SRR1373794.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARTWN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARTWN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARTWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARTWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTWN-09A-01D	DNA	EFO	SRS633664	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTWN-09A-01D A33373 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33373	SRX587958	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTWN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARTWN-09A-01D A33373 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33373_1_lane_dupsFlagged.bam	SRR1373794	@dbgap@:reads/SRP012000/SRS633664/SRX587958/SRR1373794/SRR1373794.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTWN-09A-01D_TARGET-20-PARTWN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARTWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARTWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTWN-09A-01D	DNA	EFO	SRS633664	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTWN-09A-01D A33373 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33373	SRX587958	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTWN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARTWN-09A-01D A33373 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33373_1_lane_dupsFlagged.bam	SRR1373794	@dbgap@:reads/SRP012000/SRS633664/SRX587958/SRR1373794/SRR1373794.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTWN-09A-01D_TARGET-20-PARTWN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARTWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARTWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTWN-14A-01D	DNA	EFO	SRS634726	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTWN-14A-01D A41558 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41558	SRX590836	"Specific Capture analysis of normal sample TARGET-20-PARTWN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTWN-14A-01D A41558 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41558_1_lane_dupsFlagged.bam	SRR1379853	@dbgap@:reads/SRP012000/SRS634726/SRX590836/SRR1379853/SRR1379853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARTWN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARTWN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARTWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARTWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTWN-14A-01D	DNA	EFO	SRS634726	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTWN-14A-01D A41558 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41558	SRX590836	"Specific Capture analysis of normal sample TARGET-20-PARTWN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTWN-14A-01D A41558 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41558_1_lane_dupsFlagged.bam	SRR1379853	@dbgap@:reads/SRP012000/SRS634726/SRX590836/SRR1379853/SRR1379853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTWN-09A-01D_TARGET-20-PARTWN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARTWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARTWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTWN-14A-01D	DNA	EFO	SRS634726	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTWN-14A-01D A41558 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41558	SRX590836	"Specific Capture analysis of normal sample TARGET-20-PARTWN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTWN-14A-01D A41558 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41558_1_lane_dupsFlagged.bam	SRR1379853	@dbgap@:reads/SRP012000/SRS634726/SRX590836/SRR1379853/SRR1379853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTWN-09A-01D_TARGET-20-PARTWN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARTXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTXH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTXH-09A-04D	DNA	EFO	SRS628284	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTXH-09A-04D A31251 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31251	SRX573340	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTXH-09A-04D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARTXH-09A-04D A31251 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31251_1_lane_dupsFlagged.bam	SRR1342674	@dbgap@:reads/SRP012000/SRS628284/SRX573340/SRR1342674/SRR1342674.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARTXH-09A-04D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARTXH-09A-04D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARTXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTXH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTXH-09A-04D	DNA	EFO	SRS628284	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTXH-09A-04D A31251 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31251	SRX573340	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTXH-09A-04D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARTXH-09A-04D A31251 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31251_1_lane_dupsFlagged.bam	SRR1342674	@dbgap@:reads/SRP012000/SRS628284/SRX573340/SRR1342674/SRR1342674.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTXH-09A-04D_TARGET-20-PARTXH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARTXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTXH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTXH-09A-04D	DNA	EFO	SRS628284	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTXH-09A-04D A31251 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31251	SRX573340	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTXH-09A-04D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARTXH-09A-04D A31251 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31251_1_lane_dupsFlagged.bam	SRR1342674	@dbgap@:reads/SRP012000/SRS628284/SRX573340/SRR1342674/SRR1342674.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTXH-09A-04D_TARGET-20-PARTXH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARTXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTXH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTXH-14A-01D	DNA	EFO	SRS634704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTXH-14A-01D A41559 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41559	SRX590810	"Specific Capture analysis of normal sample TARGET-20-PARTXH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTXH-14A-01D A41559 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41559_1_lane_dupsFlagged.bam	SRR1379810	@dbgap@:reads/SRP012000/SRS634704/SRX590810/SRR1379810/SRR1379810.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARTXH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARTXH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARTXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTXH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTXH-14A-01D	DNA	EFO	SRS634704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTXH-14A-01D A41559 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41559	SRX590810	"Specific Capture analysis of normal sample TARGET-20-PARTXH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTXH-14A-01D A41559 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41559_1_lane_dupsFlagged.bam	SRR1379810	@dbgap@:reads/SRP012000/SRS634704/SRX590810/SRR1379810/SRR1379810.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTXH-09A-04D_TARGET-20-PARTXH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARTXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTXH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTXH-14A-01D	DNA	EFO	SRS634704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTXH-14A-01D A41559 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41559	SRX590810	"Specific Capture analysis of normal sample TARGET-20-PARTXH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARTXH-14A-01D A41559 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41559_1_lane_dupsFlagged.bam	SRR1379810	@dbgap@:reads/SRP012000/SRS634704/SRX590810/SRR1379810/SRR1379810.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTXH-09A-04D_TARGET-20-PARTXH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-03A-01D	DNA	EFO	SRS628315	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTYK-03A-01D A31252 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31252	SRX573385	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTYK-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARTYK-03A-01D A31252 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31252_1_lane_dupsFlagged.bam	SRR1342635	@dbgap@:reads/SRP012000/SRS628315/SRX573385/SRR1342635/SRR1342635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARTYK-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARTYK-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-03A-01D	DNA	EFO	SRS628315	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTYK-03A-01D A31252 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31252	SRX573385	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTYK-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARTYK-03A-01D A31252 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31252_1_lane_dupsFlagged.bam	SRR1342635	@dbgap@:reads/SRP012000/SRS628315/SRX573385/SRR1342635/SRR1342635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTYK-03A-01D_TARGET-20-PARTYK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-03A-01D	DNA	EFO	SRS628315	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTYK-03A-01D A31252 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31252	SRX573385	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTYK-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARTYK-03A-01D A31252 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31252_1_lane_dupsFlagged.bam	SRR1342635	@dbgap@:reads/SRP012000/SRS628315/SRX573385/SRR1342635/SRR1342635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTYK-03A-01D_TARGET-20-PARTYK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-14A-01D	DNA	EFO	SRS636007	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTYK-14A-01D A42598 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42598	SRX593977	"Specific Capture analysis of normal sample TARGET-20-PARTYK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARTYK-14A-01D A42598 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42598_1_lane_dupsFlagged.bam	SRR1386435	@dbgap@:reads/SRP012000/SRS636007/SRX593977/SRR1386435/SRR1386435.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARTYK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARTYK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-14A-01D	DNA	EFO	SRS636007	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTYK-14A-01D A42598 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42598	SRX593977	"Specific Capture analysis of normal sample TARGET-20-PARTYK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARTYK-14A-01D A42598 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42598_1_lane_dupsFlagged.bam	SRR1386435	@dbgap@:reads/SRP012000/SRS636007/SRX593977/SRR1386435/SRR1386435.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTYK-03A-01D_TARGET-20-PARTYK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-14A-01D	DNA	EFO	SRS636007	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTYK-14A-01D A42598 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42598	SRX593977	"Specific Capture analysis of normal sample TARGET-20-PARTYK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARTYK-14A-01D A42598 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42598_1_lane_dupsFlagged.bam	SRR1386435	@dbgap@:reads/SRP012000/SRS636007/SRX593977/SRR1386435/SRR1386435.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTYK-03A-01D_TARGET-20-PARTYK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARTYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYV-09A-01D	DNA	EFO	SRS628938	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTYV-09A-01D A32329 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32329	SRX574994	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTYV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARTYV-09A-01D A32329 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32329_1_lane_dupsFlagged.bam	SRR1346183	@dbgap@:reads/SRP012000/SRS628938/SRX574994/SRR1346183/SRR1346183.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARTYV-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARTYV-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARTYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYV-09A-01D	DNA	EFO	SRS628938	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTYV-09A-01D A32329 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32329	SRX574994	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTYV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARTYV-09A-01D A32329 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32329_1_lane_dupsFlagged.bam	SRR1346183	@dbgap@:reads/SRP012000/SRS628938/SRX574994/SRR1346183/SRR1346183.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTYV-09A-01D_TARGET-20-PARTYV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARTYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYV-09A-01D	DNA	EFO	SRS628938	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTYV-09A-01D A32329 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32329	SRX574994	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARTYV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARTYV-09A-01D A32329 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32329_1_lane_dupsFlagged.bam	SRR1346183	@dbgap@:reads/SRP012000/SRS628938/SRX574994/SRR1346183/SRR1346183.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTYV-09A-01D_TARGET-20-PARTYV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARTYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYV-14A-01D	DNA	EFO	SRS635890	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTYV-14A-01D A42475 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42475	SRX593848	"Specific Capture analysis of normal sample TARGET-20-PARTYV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARTYV-14A-01D A42475 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42475_1_lane_dupsFlagged.bam	SRR1386381	@dbgap@:reads/SRP012000/SRS635890/SRX593848/SRR1386381/SRR1386381.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARTYV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARTYV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARTYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYV-14A-01D	DNA	EFO	SRS635890	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTYV-14A-01D A42475 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42475	SRX593848	"Specific Capture analysis of normal sample TARGET-20-PARTYV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARTYV-14A-01D A42475 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42475_1_lane_dupsFlagged.bam	SRR1386381	@dbgap@:reads/SRP012000/SRS635890/SRX593848/SRR1386381/SRR1386381.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTYV-09A-01D_TARGET-20-PARTYV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARTYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYV-14A-01D	DNA	EFO	SRS635890	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTYV-14A-01D A42475 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42475	SRX593848	"Specific Capture analysis of normal sample TARGET-20-PARTYV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARTYV-14A-01D A42475 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42475_1_lane_dupsFlagged.bam	SRR1386381	@dbgap@:reads/SRP012000/SRS635890/SRX593848/SRR1386381/SRR1386381.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARTYV-09A-01D_TARGET-20-PARTYV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUAD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUAD-09A-01D	DNA	EFO	SRS633655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUAD-09A-01D A33374 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33374	SRX587950	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUAD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARUAD-09A-01D A33374 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33374_1_lane_dupsFlagged.bam	SRR1373813	@dbgap@:reads/SRP012000/SRS633655/SRX587950/SRR1373813/SRR1373813.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUAD-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUAD-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARUAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUAD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUAD-09A-01D	DNA	EFO	SRS633655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUAD-09A-01D A33374 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33374	SRX587950	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUAD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARUAD-09A-01D A33374 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33374_1_lane_dupsFlagged.bam	SRR1373813	@dbgap@:reads/SRP012000/SRS633655/SRX587950/SRR1373813/SRR1373813.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUAD-09A-01D_TARGET-20-PARUAD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUAD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUAD-09A-01D	DNA	EFO	SRS633655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUAD-09A-01D A33374 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33374	SRX587950	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUAD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARUAD-09A-01D A33374 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33374_1_lane_dupsFlagged.bam	SRR1373813	@dbgap@:reads/SRP012000/SRS633655/SRX587950/SRR1373813/SRR1373813.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUAD-09A-01D_TARGET-20-PARUAD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUAD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUAD-14A-01D	DNA	EFO	SRS634717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUAD-14A-01D A41560 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41560	SRX590824	"Specific Capture analysis of normal sample TARGET-20-PARUAD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUAD-14A-01D A41560 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41560_1_lane_dupsFlagged.bam	SRR1379869	@dbgap@:reads/SRP012000/SRS634717/SRX590824/SRR1379869/SRR1379869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUAD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUAD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARUAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUAD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUAD-14A-01D	DNA	EFO	SRS634717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUAD-14A-01D A41560 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41560	SRX590824	"Specific Capture analysis of normal sample TARGET-20-PARUAD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUAD-14A-01D A41560 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41560_1_lane_dupsFlagged.bam	SRR1379869	@dbgap@:reads/SRP012000/SRS634717/SRX590824/SRR1379869/SRR1379869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUAD-09A-01D_TARGET-20-PARUAD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUAD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUAD-14A-01D	DNA	EFO	SRS634717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUAD-14A-01D A41560 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41560	SRX590824	"Specific Capture analysis of normal sample TARGET-20-PARUAD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUAD-14A-01D A41560 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41560_1_lane_dupsFlagged.bam	SRR1379869	@dbgap@:reads/SRP012000/SRS634717/SRX590824/SRR1379869/SRR1379869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUAD-09A-01D_TARGET-20-PARUAD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBE-09A-01D	DNA	EFO	SRS633623	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUBE-09A-01D A33399 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33399	SRX587917	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUBE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARUBE-09A-01D A33399 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33399_1_lane_dupsFlagged.bam	SRR1373827	@dbgap@:reads/SRP012000/SRS633623/SRX587917/SRR1373827/SRR1373827.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUBE-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUBE-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARUBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBE-09A-01D	DNA	EFO	SRS633623	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUBE-09A-01D A33399 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33399	SRX587917	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUBE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARUBE-09A-01D A33399 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33399_1_lane_dupsFlagged.bam	SRR1373827	@dbgap@:reads/SRP012000/SRS633623/SRX587917/SRR1373827/SRR1373827.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUBE-09A-01D_TARGET-20-PARUBE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBE-09A-01D	DNA	EFO	SRS633623	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUBE-09A-01D A33399 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33399	SRX587917	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUBE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARUBE-09A-01D A33399 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33399_1_lane_dupsFlagged.bam	SRR1373827	@dbgap@:reads/SRP012000/SRS633623/SRX587917/SRR1373827/SRR1373827.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUBE-09A-01D_TARGET-20-PARUBE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBE-14A-01D	DNA	EFO	SRS634736	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUBE-14A-01D A41561 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41561	SRX590849	"Specific Capture analysis of normal sample TARGET-20-PARUBE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUBE-14A-01D A41561 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41561_1_lane_dupsFlagged.bam	SRR1379868	@dbgap@:reads/SRP012000/SRS634736/SRX590849/SRR1379868/SRR1379868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUBE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUBE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARUBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBE-14A-01D	DNA	EFO	SRS634736	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUBE-14A-01D A41561 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41561	SRX590849	"Specific Capture analysis of normal sample TARGET-20-PARUBE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUBE-14A-01D A41561 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41561_1_lane_dupsFlagged.bam	SRR1379868	@dbgap@:reads/SRP012000/SRS634736/SRX590849/SRR1379868/SRR1379868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUBE-09A-01D_TARGET-20-PARUBE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBE-14A-01D	DNA	EFO	SRS634736	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUBE-14A-01D A41561 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41561	SRX590849	"Specific Capture analysis of normal sample TARGET-20-PARUBE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUBE-14A-01D A41561 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41561_1_lane_dupsFlagged.bam	SRR1379868	@dbgap@:reads/SRP012000/SRS634736/SRX590849/SRR1379868/SRR1379868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUBE-09A-01D_TARGET-20-PARUBE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-01D	DNA	EFO	SRS628711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUBT-09A-01D A32215 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32215	SRX574404	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUBT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARUBT-09A-01D A32215 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32215_1_lane_dupsFlagged.bam	SRR1344850	@dbgap@:reads/SRP012000/SRS628711/SRX574404/SRR1344850/SRR1344850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUBT-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUBT-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-03A-01D	DNA	EFO	SRS160299	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUCB-03A-01D A31206 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31206	SRX573358	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUCB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARUCB-03A-01D A31206 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31206_1_lane_dupsFlagged.bam	SRR1342669	@dbgap@:reads/SRP012000/SRS160299/SRX573358/SRR1342669/SRR1342669.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUCB-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUCB-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-03A-01D	DNA	EFO	SRS160299	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUCB-03A-01D A31206 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31206	SRX573358	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUCB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARUCB-03A-01D A31206 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31206_1_lane_dupsFlagged.bam	SRR1342669	@dbgap@:reads/SRP012000/SRS160299/SRX573358/SRR1342669/SRR1342669.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUCB-03A-01D_TARGET-20-PARUCB-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-03A-01D	DNA	EFO	SRS160299	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUCB-03A-01D A31206 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31206	SRX573358	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUCB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARUCB-03A-01D A31206 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31206_1_lane_dupsFlagged.bam	SRR1342669	@dbgap@:reads/SRP012000/SRS160299/SRX573358/SRR1342669/SRR1342669.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUCB-03A-01D_TARGET-20-PARUCB-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-04A-01D	DNA	EFO	SRS160300	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUCB-04A-01D A42209 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42209	SRX597671	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUCB-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARUCB-04A-01D A42209 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42209_1_lane_dupsFlagged.bam	SRR1395009	@dbgap@:reads/SRP012000/SRS160300/SRX597671/SRR1395009/SRR1395009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUCB-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUCB-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-04A-01D	DNA	EFO	SRS160300	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUCB-04A-01D A42209 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42209	SRX597671	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUCB-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARUCB-04A-01D A42209 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42209_1_lane_dupsFlagged.bam	SRR1395009	@dbgap@:reads/SRP012000/SRS160300/SRX597671/SRR1395009/SRR1395009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUCB-04A-01D_TARGET-20-PARUCB-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-04A-01D	DNA	EFO	SRS160300	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUCB-04A-01D A42209 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42209	SRX597671	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUCB-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARUCB-04A-01D A42209 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42209_1_lane_dupsFlagged.bam	SRR1395009	@dbgap@:reads/SRP012000/SRS160300/SRX597671/SRR1395009/SRR1395009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUCB-04A-01D_TARGET-20-PARUCB-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-14A-02D	DNA	EFO	SRS634749	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUCB-14A-02D A41562 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41562	SRX590865	"Specific Capture analysis of normal sample TARGET-20-PARUCB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUCB-14A-02D A41562 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41562_1_lane_dupsFlagged.bam	SRR1379814	@dbgap@:reads/SRP012000/SRS634749/SRX590865/SRR1379814/SRR1379814.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUCB-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUCB-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-14A-02D	DNA	EFO	SRS634749	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUCB-14A-02D A41562 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41562	SRX590865	"Specific Capture analysis of normal sample TARGET-20-PARUCB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUCB-14A-02D A41562 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41562_1_lane_dupsFlagged.bam	SRR1379814	@dbgap@:reads/SRP012000/SRS634749/SRX590865/SRR1379814/SRR1379814.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUCB-03A-01D_TARGET-20-PARUCB-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-14A-02D	DNA	EFO	SRS634749	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUCB-14A-02D A41562 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41562	SRX590865	"Specific Capture analysis of normal sample TARGET-20-PARUCB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUCB-14A-02D A41562 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41562_1_lane_dupsFlagged.bam	SRR1379814	@dbgap@:reads/SRP012000/SRS634749/SRX590865/SRR1379814/SRR1379814.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUCB-03A-01D_TARGET-20-PARUCB-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-14A-02D	DNA	EFO	SRS634749	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUCB-14A-02D A41562 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41562	SRX590865	"Specific Capture analysis of normal sample TARGET-20-PARUCB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUCB-14A-02D A41562 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41562_1_lane_dupsFlagged.bam	SRR1379814	@dbgap@:reads/SRP012000/SRS634749/SRX590865/SRR1379814/SRR1379814.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUCB-04A-01D_TARGET-20-PARUCB-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-14A-02D	DNA	EFO	SRS634749	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUCB-14A-02D A41562 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41562	SRX590865	"Specific Capture analysis of normal sample TARGET-20-PARUCB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUCB-14A-02D A41562 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41562_1_lane_dupsFlagged.bam	SRR1379814	@dbgap@:reads/SRP012000/SRS634749/SRX590865/SRR1379814/SRR1379814.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUCB-04A-01D_TARGET-20-PARUCB-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-03A-01D	DNA	EFO	SRS628277	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUDL-03A-01D A31278 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31278	SRX573331	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUDL-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARUDL-03A-01D A31278 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31278_1_lane_dupsFlagged.bam	SRR1342639	@dbgap@:reads/SRP012000/SRS628277/SRX573331/SRR1342639/SRR1342639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUDL-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUDL-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-03A-01D	DNA	EFO	SRS628277	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUDL-03A-01D A31278 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31278	SRX573331	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUDL-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARUDL-03A-01D A31278 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31278_1_lane_dupsFlagged.bam	SRR1342639	@dbgap@:reads/SRP012000/SRS628277/SRX573331/SRR1342639/SRR1342639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUDL-03A-01D_TARGET-20-PARUDL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-03A-01D	DNA	EFO	SRS628277	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUDL-03A-01D A31278 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31278	SRX573331	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUDL-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARUDL-03A-01D A31278 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31278_1_lane_dupsFlagged.bam	SRR1342639	@dbgap@:reads/SRP012000/SRS628277/SRX573331/SRR1342639/SRR1342639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUDL-03A-01D_TARGET-20-PARUDL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-14A-01D	DNA	EFO	SRS270748	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUDL-14A-01D A41563 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41563	SRX590822	"Specific Capture analysis of normal sample TARGET-20-PARUDL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUDL-14A-01D A41563 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41563_1_lane_dupsFlagged.bam	SRR1379815	@dbgap@:reads/SRP012000/SRS270748/SRX590822/SRR1379815/SRR1379815.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUDL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUDL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-14A-01D	DNA	EFO	SRS270748	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUDL-14A-01D A41563 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41563	SRX590822	"Specific Capture analysis of normal sample TARGET-20-PARUDL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUDL-14A-01D A41563 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41563_1_lane_dupsFlagged.bam	SRR1379815	@dbgap@:reads/SRP012000/SRS270748/SRX590822/SRR1379815/SRR1379815.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUDL-03A-01D_TARGET-20-PARUDL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-14A-01D	DNA	EFO	SRS270748	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUDL-14A-01D A41563 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41563	SRX590822	"Specific Capture analysis of normal sample TARGET-20-PARUDL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUDL-14A-01D A41563 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41563_1_lane_dupsFlagged.bam	SRR1379815	@dbgap@:reads/SRP012000/SRS270748/SRX590822/SRR1379815/SRR1379815.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUDL-03A-01D_TARGET-20-PARUDL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUEX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUEX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUEX-09A-01D	DNA	EFO	SRS633663	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUEX-09A-01D A33400 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33400	SRX587957	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUEX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARUEX-09A-01D A33400 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33400_1_lane_dupsFlagged.bam	SRR1373797	@dbgap@:reads/SRP012000/SRS633663/SRX587957/SRR1373797/SRR1373797.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUEX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUEX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARUEX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUEX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUEX-09A-01D	DNA	EFO	SRS633663	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUEX-09A-01D A33400 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33400	SRX587957	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUEX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARUEX-09A-01D A33400 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33400_1_lane_dupsFlagged.bam	SRR1373797	@dbgap@:reads/SRP012000/SRS633663/SRX587957/SRR1373797/SRR1373797.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUEX-09A-01D_TARGET-20-PARUEX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUEX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUEX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUEX-09A-01D	DNA	EFO	SRS633663	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUEX-09A-01D A33400 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33400	SRX587957	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUEX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARUEX-09A-01D A33400 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33400_1_lane_dupsFlagged.bam	SRR1373797	@dbgap@:reads/SRP012000/SRS633663/SRX587957/SRR1373797/SRR1373797.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUEX-09A-01D_TARGET-20-PARUEX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUEX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUEX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUEX-14A-01D	DNA	EFO	SRS634708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUEX-14A-01D A41564 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41564	SRX590814	"Specific Capture analysis of normal sample TARGET-20-PARUEX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUEX-14A-01D A41564 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41564_1_lane_dupsFlagged.bam	SRR1379800	@dbgap@:reads/SRP012000/SRS634708/SRX590814/SRR1379800/SRR1379800.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUEX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUEX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARUEX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUEX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUEX-14A-01D	DNA	EFO	SRS634708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUEX-14A-01D A41564 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41564	SRX590814	"Specific Capture analysis of normal sample TARGET-20-PARUEX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUEX-14A-01D A41564 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41564_1_lane_dupsFlagged.bam	SRR1379800	@dbgap@:reads/SRP012000/SRS634708/SRX590814/SRR1379800/SRR1379800.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUEX-09A-01D_TARGET-20-PARUEX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUEX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUEX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUEX-14A-01D	DNA	EFO	SRS634708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUEX-14A-01D A41564 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41564	SRX590814	"Specific Capture analysis of normal sample TARGET-20-PARUEX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUEX-14A-01D A41564 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41564_1_lane_dupsFlagged.bam	SRR1379800	@dbgap@:reads/SRP012000/SRS634708/SRX590814/SRR1379800/SRR1379800.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUEX-09A-01D_TARGET-20-PARUEX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUNX-04A-01D A42251 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42251	SRX597749	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUNX-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARUNX-04A-01D A42251 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42251_1_lane_dupsFlagged.bam	SRR1395016	@dbgap@:reads/SRP012000/SRS160303/SRX597749/SRR1395016/SRR1395016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUNX-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUNX-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-02D	DNA	EFO	SRS628719	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUNX-09A-02D A32216 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32216	SRX574413	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUNX-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARUNX-09A-02D A32216 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32216_1_lane_dupsFlagged.bam	SRR1344922	@dbgap@:reads/SRP012000/SRS628719/SRX574413/SRR1344922/SRR1344922.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUNX-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUNX-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARURW-09A-02D	DNA	EFO	SRS628715	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARURW-09A-02D A32217 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32217	SRX574409	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARURW-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARURW-09A-02D A32217 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32217_1_lane_dupsFlagged.bam	SRR1344924	@dbgap@:reads/SRP012000/SRS628715/SRX574409/SRR1344924/SRR1344924.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARURW-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARURW-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARURX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARURX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARURX-09A-01D	DNA	EFO	SRS635449	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARURX-09A-01D A41764 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41764	SRX593171	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARURX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARURX-09A-01D A41764 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41764_1_lane_dupsFlagged.bam	SRR1385653	@dbgap@:reads/SRP012000/SRS635449/SRX593171/SRR1385653/SRR1385653.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARURX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARURX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARURX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARURX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARURX-09A-01D	DNA	EFO	SRS635449	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARURX-09A-01D A41764 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41764	SRX593171	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARURX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARURX-09A-01D A41764 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41764_1_lane_dupsFlagged.bam	SRR1385653	@dbgap@:reads/SRP012000/SRS635449/SRX593171/SRR1385653/SRR1385653.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARURX-09A-01D_TARGET-20-PARURX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARURX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARURX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARURX-09A-01D	DNA	EFO	SRS635449	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARURX-09A-01D A41764 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41764	SRX593171	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARURX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARURX-09A-01D A41764 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41764_1_lane_dupsFlagged.bam	SRR1385653	@dbgap@:reads/SRP012000/SRS635449/SRX593171/SRR1385653/SRR1385653.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARURX-09A-01D_TARGET-20-PARURX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARURX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARURX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARURX-14A-01D	DNA	EFO	SRS637431	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARURX-14A-01D A42798 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42798	SRX597840	"Specific Capture analysis of normal sample TARGET-20-PARURX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARURX-14A-01D A42798 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42798_1_lane_dupsFlagged.bam	SRR1395112	@dbgap@:reads/SRP012000/SRS637431/SRX597840/SRR1395112/SRR1395112.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARURX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARURX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARURX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARURX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARURX-14A-01D	DNA	EFO	SRS637431	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARURX-14A-01D A42798 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42798	SRX597840	"Specific Capture analysis of normal sample TARGET-20-PARURX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARURX-14A-01D A42798 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42798_1_lane_dupsFlagged.bam	SRR1395112	@dbgap@:reads/SRP012000/SRS637431/SRX597840/SRR1395112/SRR1395112.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARURX-09A-01D_TARGET-20-PARURX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARURX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARURX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARURX-14A-01D	DNA	EFO	SRS637431	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARURX-14A-01D A42798 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42798	SRX597840	"Specific Capture analysis of normal sample TARGET-20-PARURX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARURX-14A-01D A42798 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42798_1_lane_dupsFlagged.bam	SRR1395112	@dbgap@:reads/SRP012000/SRS637431/SRX597840/SRR1395112/SRR1395112.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARURX-09A-01D_TARGET-20-PARURX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUSN-09A-01D	DNA	EFO	SRS633686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUSN-09A-01D A33375 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33375	SRX587980	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUSN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARUSN-09A-01D A33375 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33375_1_lane_dupsFlagged.bam	SRR1373788	@dbgap@:reads/SRP012000/SRS633686/SRX587980/SRR1373788/SRR1373788.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUSN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUSN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUSN-09A-01D	DNA	EFO	SRS633686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUSN-09A-01D A33375 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33375	SRX587980	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUSN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARUSN-09A-01D A33375 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33375_1_lane_dupsFlagged.bam	SRR1373788	@dbgap@:reads/SRP012000/SRS633686/SRX587980/SRR1373788/SRR1373788.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUSN-09A-01D_TARGET-20-PARUSN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUSN-09A-01D	DNA	EFO	SRS633686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUSN-09A-01D A33375 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33375	SRX587980	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUSN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARUSN-09A-01D A33375 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33375_1_lane_dupsFlagged.bam	SRR1373788	@dbgap@:reads/SRP012000/SRS633686/SRX587980/SRR1373788/SRR1373788.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUSN-09A-01D_TARGET-20-PARUSN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUSN-14A-01D	DNA	EFO	SRS634698	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUSN-14A-01D A41565 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41565	SRX590799	"Specific Capture analysis of normal sample TARGET-20-PARUSN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUSN-14A-01D A41565 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41565_1_lane_dupsFlagged.bam	SRR1379827	@dbgap@:reads/SRP012000/SRS634698/SRX590799/SRR1379827/SRR1379827.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUSN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUSN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUSN-14A-01D	DNA	EFO	SRS634698	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUSN-14A-01D A41565 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41565	SRX590799	"Specific Capture analysis of normal sample TARGET-20-PARUSN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUSN-14A-01D A41565 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41565_1_lane_dupsFlagged.bam	SRR1379827	@dbgap@:reads/SRP012000/SRS634698/SRX590799/SRR1379827/SRR1379827.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUSN-09A-01D_TARGET-20-PARUSN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUSN-14A-01D	DNA	EFO	SRS634698	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUSN-14A-01D A41565 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41565	SRX590799	"Specific Capture analysis of normal sample TARGET-20-PARUSN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARUSN-14A-01D A41565 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41565_1_lane_dupsFlagged.bam	SRR1379827	@dbgap@:reads/SRP012000/SRS634698/SRX590799/SRR1379827/SRR1379827.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUSN-09A-01D_TARGET-20-PARUSN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-03D	DNA	EFO	SRS628729	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUTH-09A-03D A32218 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32218	SRX574424	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUTH-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARUTH-09A-03D A32218 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32218_1_lane_dupsFlagged.bam	SRR1344902	@dbgap@:reads/SRP012000/SRS628729/SRX574424/SRR1344902/SRR1344902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUTH-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUTH-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-03D	DNA	EFO	SRS628729	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUTH-09A-03D A32218 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32218	SRX574424	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUTH-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARUTH-09A-03D A32218 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32218_1_lane_dupsFlagged.bam	SRR1344902	@dbgap@:reads/SRP012000/SRS628729/SRX574424/SRR1344902/SRR1344902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUTH-09A-03D_TARGET-20-PARUTH-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-03D	DNA	EFO	SRS628729	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUTH-09A-03D A32218 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32218	SRX574424	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUTH-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARUTH-09A-03D A32218 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32218_1_lane_dupsFlagged.bam	SRR1344902	@dbgap@:reads/SRP012000/SRS628729/SRX574424/SRR1344902/SRR1344902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUTH-09A-03D_TARGET-20-PARUTH-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-02D	DNA	EFO	SRS635943	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUTH-14A-02D A42478 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42478	SRX593904	"Specific Capture analysis of normal sample TARGET-20-PARUTH-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARUTH-14A-02D A42478 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42478_1_lane_dupsFlagged.bam	SRR1386389	@dbgap@:reads/SRP012000/SRS635943/SRX593904/SRR1386389/SRR1386389.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUTH-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUTH-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-02D	DNA	EFO	SRS635943	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUTH-14A-02D A42478 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42478	SRX593904	"Specific Capture analysis of normal sample TARGET-20-PARUTH-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARUTH-14A-02D A42478 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42478_1_lane_dupsFlagged.bam	SRR1386389	@dbgap@:reads/SRP012000/SRS635943/SRX593904/SRR1386389/SRR1386389.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUTH-09A-03D_TARGET-20-PARUTH-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-14A-02D	DNA	EFO	SRS635943	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUTH-14A-02D A42478 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42478	SRX593904	"Specific Capture analysis of normal sample TARGET-20-PARUTH-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARUTH-14A-02D A42478 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42478_1_lane_dupsFlagged.bam	SRR1386389	@dbgap@:reads/SRP012000/SRS635943/SRX593904/SRR1386389/SRR1386389.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUTH-09A-03D_TARGET-20-PARUTH-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-03D	DNA	EFO	SRS628707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUUB-09A-03D A32219 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32219	SRX574400	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUUB-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARUUB-09A-03D A32219 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32219_1_lane_dupsFlagged.bam	SRR1344915	@dbgap@:reads/SRP012000/SRS628707/SRX574400/SRR1344915/SRR1344915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUUB-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUUB-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-03D	DNA	EFO	SRS628707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUUB-09A-03D A32219 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32219	SRX574400	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUUB-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARUUB-09A-03D A32219 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32219_1_lane_dupsFlagged.bam	SRR1344915	@dbgap@:reads/SRP012000/SRS628707/SRX574400/SRR1344915/SRR1344915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUUB-09A-03D_TARGET-20-PARUUB-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-03D	DNA	EFO	SRS628707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUUB-09A-03D A32219 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32219	SRX574400	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUUB-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARUUB-09A-03D A32219 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32219_1_lane_dupsFlagged.bam	SRR1344915	@dbgap@:reads/SRP012000/SRS628707/SRX574400/SRR1344915/SRR1344915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUUB-09A-03D_TARGET-20-PARUUB-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-14A-02D	DNA	EFO	SRS635923	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUUB-14A-02D A42477 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42477	SRX593883	"Specific Capture analysis of normal sample TARGET-20-PARUUB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARUUB-14A-02D A42477 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42477_1_lane_dupsFlagged.bam	SRR1386361	@dbgap@:reads/SRP012000/SRS635923/SRX593883/SRR1386361/SRR1386361.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUUB-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUUB-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-14A-02D	DNA	EFO	SRS635923	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUUB-14A-02D A42477 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42477	SRX593883	"Specific Capture analysis of normal sample TARGET-20-PARUUB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARUUB-14A-02D A42477 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42477_1_lane_dupsFlagged.bam	SRR1386361	@dbgap@:reads/SRP012000/SRS635923/SRX593883/SRR1386361/SRR1386361.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUUB-09A-03D_TARGET-20-PARUUB-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-14A-02D	DNA	EFO	SRS635923	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUUB-14A-02D A42477 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42477	SRX593883	"Specific Capture analysis of normal sample TARGET-20-PARUUB-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARUUB-14A-02D A42477 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42477_1_lane_dupsFlagged.bam	SRR1386361	@dbgap@:reads/SRP012000/SRS635923/SRX593883/SRR1386361/SRR1386361.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUUB-09A-03D_TARGET-20-PARUUB-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-04A-01D	DNA	EFO	SRS637524	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUWX-04A-01D A42712 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42712	SRX597961	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUWX-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARUWX-04A-01D A42712 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42712_1_lane_dupsFlagged.bam	SRR1395296	@dbgap@:reads/SRP012000/SRS637524/SRX597961/SRR1395296/SRR1395296.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUWX-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUWX-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-04A-01D	DNA	EFO	SRS637524	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUWX-04A-01D A42712 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42712	SRX597961	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUWX-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARUWX-04A-01D A42712 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42712_1_lane_dupsFlagged.bam	SRR1395296	@dbgap@:reads/SRP012000/SRS637524/SRX597961/SRR1395296/SRR1395296.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUWX-04A-01D_TARGET-20-PARUWX-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-04A-01D	DNA	EFO	SRS637524	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUWX-04A-01D A42712 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42712	SRX597961	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUWX-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARUWX-04A-01D A42712 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42712_1_lane_dupsFlagged.bam	SRR1395296	@dbgap@:reads/SRP012000/SRS637524/SRX597961/SRR1395296/SRR1395296.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUWX-04A-01D_TARGET-20-PARUWX-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-02D	DNA	EFO	SRS628756	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUWX-09A-02D A32220 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32220	SRX574452	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUWX-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARUWX-09A-02D A32220 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32220_1_lane_dupsFlagged.bam	SRR1344878	@dbgap@:reads/SRP012000/SRS628756/SRX574452/SRR1344878/SRR1344878.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUWX-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUWX-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-02D	DNA	EFO	SRS628756	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUWX-09A-02D A32220 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32220	SRX574452	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUWX-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARUWX-09A-02D A32220 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32220_1_lane_dupsFlagged.bam	SRR1344878	@dbgap@:reads/SRP012000/SRS628756/SRX574452/SRR1344878/SRR1344878.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUWX-09A-02D_TARGET-20-PARUWX-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-02D	DNA	EFO	SRS628756	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUWX-09A-02D A32220 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32220	SRX574452	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUWX-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARUWX-09A-02D A32220 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32220_1_lane_dupsFlagged.bam	SRR1344878	@dbgap@:reads/SRP012000/SRS628756/SRX574452/SRR1344878/SRR1344878.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUWX-09A-02D_TARGET-20-PARUWX-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-02D	DNA	EFO	SRS637363	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUWX-14A-02D A42799 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42799	SRX597769	"Specific Capture analysis of normal sample TARGET-20-PARUWX-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARUWX-14A-02D A42799 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42799_1_lane_dupsFlagged.bam	SRR1395047	@dbgap@:reads/SRP012000/SRS637363/SRX597769/SRR1395047/SRR1395047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUWX-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUWX-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-02D	DNA	EFO	SRS637363	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUWX-14A-02D A42799 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42799	SRX597769	"Specific Capture analysis of normal sample TARGET-20-PARUWX-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARUWX-14A-02D A42799 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42799_1_lane_dupsFlagged.bam	SRR1395047	@dbgap@:reads/SRP012000/SRS637363/SRX597769/SRR1395047/SRR1395047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUWX-04A-01D_TARGET-20-PARUWX-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-02D	DNA	EFO	SRS637363	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUWX-14A-02D A42799 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42799	SRX597769	"Specific Capture analysis of normal sample TARGET-20-PARUWX-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARUWX-14A-02D A42799 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42799_1_lane_dupsFlagged.bam	SRR1395047	@dbgap@:reads/SRP012000/SRS637363/SRX597769/SRR1395047/SRR1395047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUWX-04A-01D_TARGET-20-PARUWX-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-02D	DNA	EFO	SRS637363	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUWX-14A-02D A42799 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42799	SRX597769	"Specific Capture analysis of normal sample TARGET-20-PARUWX-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARUWX-14A-02D A42799 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42799_1_lane_dupsFlagged.bam	SRR1395047	@dbgap@:reads/SRP012000/SRS637363/SRX597769/SRR1395047/SRR1395047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUWX-09A-02D_TARGET-20-PARUWX-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-14A-02D	DNA	EFO	SRS637363	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUWX-14A-02D A42799 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42799	SRX597769	"Specific Capture analysis of normal sample TARGET-20-PARUWX-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARUWX-14A-02D A42799 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42799_1_lane_dupsFlagged.bam	SRR1395047	@dbgap@:reads/SRP012000/SRS637363/SRX597769/SRR1395047/SRR1395047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUWX-09A-02D_TARGET-20-PARUWX-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUXJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUXJ-09A-01D	DNA	EFO	SRS628717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUXJ-09A-01D A32221 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32221	SRX574411	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUXJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARUXJ-09A-01D A32221 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32221_1_lane_dupsFlagged.bam	SRR1344912	@dbgap@:reads/SRP012000/SRS628717/SRX574411/SRR1344912/SRR1344912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUXJ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUXJ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARUXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUXJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUXJ-09A-01D	DNA	EFO	SRS628717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUXJ-09A-01D A32221 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32221	SRX574411	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUXJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARUXJ-09A-01D A32221 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32221_1_lane_dupsFlagged.bam	SRR1344912	@dbgap@:reads/SRP012000/SRS628717/SRX574411/SRR1344912/SRR1344912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUXJ-09A-01D_TARGET-20-PARUXJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUXJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUXJ-09A-01D	DNA	EFO	SRS628717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUXJ-09A-01D A32221 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32221	SRX574411	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUXJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARUXJ-09A-01D A32221 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32221_1_lane_dupsFlagged.bam	SRR1344912	@dbgap@:reads/SRP012000/SRS628717/SRX574411/SRR1344912/SRR1344912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUXJ-09A-01D_TARGET-20-PARUXJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUXJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUXJ-14A-01D	DNA	EFO	SRS635949	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUXJ-14A-01D A42476 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42476	SRX593909	"Specific Capture analysis of normal sample TARGET-20-PARUXJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARUXJ-14A-01D A42476 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42476_1_lane_dupsFlagged.bam	SRR1386396	@dbgap@:reads/SRP012000/SRS635949/SRX593909/SRR1386396/SRR1386396.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUXJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUXJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARUXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUXJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUXJ-14A-01D	DNA	EFO	SRS635949	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUXJ-14A-01D A42476 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42476	SRX593909	"Specific Capture analysis of normal sample TARGET-20-PARUXJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARUXJ-14A-01D A42476 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42476_1_lane_dupsFlagged.bam	SRR1386396	@dbgap@:reads/SRP012000/SRS635949/SRX593909/SRR1386396/SRR1386396.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUXJ-09A-01D_TARGET-20-PARUXJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUXJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUXJ-14A-01D	DNA	EFO	SRS635949	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUXJ-14A-01D A42476 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42476	SRX593909	"Specific Capture analysis of normal sample TARGET-20-PARUXJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARUXJ-14A-01D A42476 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42476_1_lane_dupsFlagged.bam	SRR1386396	@dbgap@:reads/SRP012000/SRS635949/SRX593909/SRR1386396/SRR1386396.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUXJ-09A-01D_TARGET-20-PARUXJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUZS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUZS-03A-01D	DNA	EFO	SRS633668	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUZS-03A-01D A33401 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33401	SRX587962	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUZS-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARUZS-03A-01D A33401 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33401_1_lane_dupsFlagged.bam	SRR1373808	@dbgap@:reads/SRP012000/SRS633668/SRX587962/SRR1373808/SRR1373808.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUZS-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUZS-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARUZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUZS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUZS-03A-01D	DNA	EFO	SRS633668	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUZS-03A-01D A33401 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33401	SRX587962	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUZS-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARUZS-03A-01D A33401 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33401_1_lane_dupsFlagged.bam	SRR1373808	@dbgap@:reads/SRP012000/SRS633668/SRX587962/SRR1373808/SRR1373808.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUZS-03A-01D_TARGET-20-PARUZS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUZS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUZS-03A-01D	DNA	EFO	SRS633668	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUZS-03A-01D A33401 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33401	SRX587962	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARUZS-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARUZS-03A-01D A33401 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33401_1_lane_dupsFlagged.bam	SRR1373808	@dbgap@:reads/SRP012000/SRS633668/SRX587962/SRR1373808/SRR1373808.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUZS-03A-01D_TARGET-20-PARUZS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARUZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUZS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUZS-14A-01D	DNA	EFO	SRS637389	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUZS-14A-01D A42800 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42800	SRX597796	"Specific Capture analysis of normal sample TARGET-20-PARUZS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARUZS-14A-01D A42800 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42800_1_lane_dupsFlagged.bam	SRR1395088	@dbgap@:reads/SRP012000/SRS637389/SRX597796/SRR1395088/SRR1395088.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARUZS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARUZS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARUZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUZS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUZS-14A-01D	DNA	EFO	SRS637389	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUZS-14A-01D A42800 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42800	SRX597796	"Specific Capture analysis of normal sample TARGET-20-PARUZS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARUZS-14A-01D A42800 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42800_1_lane_dupsFlagged.bam	SRR1395088	@dbgap@:reads/SRP012000/SRS637389/SRX597796/SRR1395088/SRR1395088.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUZS-03A-01D_TARGET-20-PARUZS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARUZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARUZS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUZS-14A-01D	DNA	EFO	SRS637389	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUZS-14A-01D A42800 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42800	SRX597796	"Specific Capture analysis of normal sample TARGET-20-PARUZS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARUZS-14A-01D A42800 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42800_1_lane_dupsFlagged.bam	SRR1395088	@dbgap@:reads/SRP012000/SRS637389/SRX597796/SRR1395088/SRR1395088.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARUZS-03A-01D_TARGET-20-PARUZS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAF-09A-01D	DNA	EFO	SRS635621	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAF-09A-01D A41945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41945	SRX593442	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVAF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARVAF-09A-01D A41945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41945_1_lane_dupsFlagged.bam	SRR1385902	@dbgap@:reads/SRP012000/SRS635621/SRX593442/SRR1385902/SRR1385902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVAF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVAF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARVAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAF-09A-01D	DNA	EFO	SRS635621	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAF-09A-01D A41945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41945	SRX593442	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVAF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARVAF-09A-01D A41945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41945_1_lane_dupsFlagged.bam	SRR1385902	@dbgap@:reads/SRP012000/SRS635621/SRX593442/SRR1385902/SRR1385902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVAF-09A-01D_TARGET-20-PARVAF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAF-09A-01D	DNA	EFO	SRS635621	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAF-09A-01D A41945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41945	SRX593442	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVAF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARVAF-09A-01D A41945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41945_1_lane_dupsFlagged.bam	SRR1385902	@dbgap@:reads/SRP012000/SRS635621/SRX593442/SRR1385902/SRR1385902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVAF-09A-01D_TARGET-20-PARVAF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVAF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAF-14A-01D	DNA	EFO	SRS635969	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAF-14A-01D A42613 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42613	SRX593932	"Specific Capture analysis of normal sample TARGET-20-PARVAF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARVAF-14A-01D A42613 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42613_1_lane_dupsFlagged.bam	SRR1386414	@dbgap@:reads/SRP012000/SRS635969/SRX593932/SRR1386414/SRR1386414.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVAF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVAF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARVAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVAF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAF-14A-01D	DNA	EFO	SRS635969	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAF-14A-01D A42613 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42613	SRX593932	"Specific Capture analysis of normal sample TARGET-20-PARVAF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARVAF-14A-01D A42613 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42613_1_lane_dupsFlagged.bam	SRR1386414	@dbgap@:reads/SRP012000/SRS635969/SRX593932/SRR1386414/SRR1386414.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVAF-09A-01D_TARGET-20-PARVAF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVAF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAF-14A-01D	DNA	EFO	SRS635969	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAF-14A-01D A42613 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42613	SRX593932	"Specific Capture analysis of normal sample TARGET-20-PARVAF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARVAF-14A-01D A42613 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42613_1_lane_dupsFlagged.bam	SRR1386414	@dbgap@:reads/SRP012000/SRS635969/SRX593932/SRR1386414/SRR1386414.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVAF-09A-01D_TARGET-20-PARVAF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-03A-01D	DNA	EFO	SRS628693	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAI-03A-01D A32222 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32222	SRX574386	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVAI-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARVAI-03A-01D A32222 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32222_1_lane_dupsFlagged.bam	SRR1344848	@dbgap@:reads/SRP012000/SRS628693/SRX574386/SRR1344848/SRR1344848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVAI-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVAI-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-03A-01D	DNA	EFO	SRS628693	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAI-03A-01D A32222 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32222	SRX574386	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVAI-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARVAI-03A-01D A32222 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32222_1_lane_dupsFlagged.bam	SRR1344848	@dbgap@:reads/SRP012000/SRS628693/SRX574386/SRR1344848/SRR1344848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVAI-03A-01D_TARGET-20-PARVAI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-03A-01D	DNA	EFO	SRS628693	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAI-03A-01D A32222 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32222	SRX574386	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVAI-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARVAI-03A-01D A32222 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32222_1_lane_dupsFlagged.bam	SRR1344848	@dbgap@:reads/SRP012000/SRS628693/SRX574386/SRR1344848/SRR1344848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVAI-03A-01D_TARGET-20-PARVAI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-04A-01D	DNA	EFO	SRS637347	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAI-04A-01D A42207 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42207	SRX597743	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVAI-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARVAI-04A-01D A42207 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42207_1_lane_dupsFlagged.bam	SRR1395019	@dbgap@:reads/SRP012000/SRS637347/SRX597743/SRR1395019/SRR1395019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVAI-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVAI-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-04A-01D	DNA	EFO	SRS637347	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAI-04A-01D A42207 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42207	SRX597743	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVAI-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARVAI-04A-01D A42207 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42207_1_lane_dupsFlagged.bam	SRR1395019	@dbgap@:reads/SRP012000/SRS637347/SRX597743/SRR1395019/SRR1395019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVAI-04A-01D_TARGET-20-PARVAI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-04A-01D	DNA	EFO	SRS637347	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAI-04A-01D A42207 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42207	SRX597743	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVAI-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARVAI-04A-01D A42207 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42207_1_lane_dupsFlagged.bam	SRR1395019	@dbgap@:reads/SRP012000/SRS637347/SRX597743/SRR1395019/SRR1395019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVAI-04A-01D_TARGET-20-PARVAI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAI-14A-01D A41566 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41566	SRX590803	"Specific Capture analysis of normal sample TARGET-20-PARVAI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARVAI-14A-01D A41566 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41566_1_lane_dupsFlagged.bam	SRR1379822	@dbgap@:reads/SRP012000/SRS270752/SRX590803/SRR1379822/SRR1379822.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVAI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVAI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAI-14A-01D A41566 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41566	SRX590803	"Specific Capture analysis of normal sample TARGET-20-PARVAI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARVAI-14A-01D A41566 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41566_1_lane_dupsFlagged.bam	SRR1379822	@dbgap@:reads/SRP012000/SRS270752/SRX590803/SRR1379822/SRR1379822.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVAI-03A-01D_TARGET-20-PARVAI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAI-14A-01D A41566 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41566	SRX590803	"Specific Capture analysis of normal sample TARGET-20-PARVAI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARVAI-14A-01D A41566 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41566_1_lane_dupsFlagged.bam	SRR1379822	@dbgap@:reads/SRP012000/SRS270752/SRX590803/SRR1379822/SRR1379822.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVAI-03A-01D_TARGET-20-PARVAI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAI-14A-01D A41566 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41566	SRX590803	"Specific Capture analysis of normal sample TARGET-20-PARVAI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARVAI-14A-01D A41566 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41566_1_lane_dupsFlagged.bam	SRR1379822	@dbgap@:reads/SRP012000/SRS270752/SRX590803/SRR1379822/SRR1379822.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVAI-04A-01D_TARGET-20-PARVAI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-14A-01D	DNA	EFO	SRS270752	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAI-14A-01D A41566 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41566	SRX590803	"Specific Capture analysis of normal sample TARGET-20-PARVAI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARVAI-14A-01D A41566 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41566_1_lane_dupsFlagged.bam	SRR1379822	@dbgap@:reads/SRP012000/SRS270752/SRX590803/SRR1379822/SRR1379822.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVAI-04A-01D_TARGET-20-PARVAI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVLH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVLH-09A-01D	DNA	EFO	SRS628768	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVLH-09A-01D A32223 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32223	SRX574465	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVLH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARVLH-09A-01D A32223 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32223_1_lane_dupsFlagged.bam	SRR1344856	@dbgap@:reads/SRP012000/SRS628768/SRX574465/SRR1344856/SRR1344856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVLH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVLH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARVLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVLH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVLH-09A-01D	DNA	EFO	SRS628768	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVLH-09A-01D A32223 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32223	SRX574465	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVLH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARVLH-09A-01D A32223 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32223_1_lane_dupsFlagged.bam	SRR1344856	@dbgap@:reads/SRP012000/SRS628768/SRX574465/SRR1344856/SRR1344856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVLH-09A-01D_TARGET-20-PARVLH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVLH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVLH-09A-01D	DNA	EFO	SRS628768	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVLH-09A-01D A32223 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32223	SRX574465	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVLH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARVLH-09A-01D A32223 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32223_1_lane_dupsFlagged.bam	SRR1344856	@dbgap@:reads/SRP012000/SRS628768/SRX574465/SRR1344856/SRR1344856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVLH-09A-01D_TARGET-20-PARVLH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVLH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVLH-14A-01D	DNA	EFO	SRS634727	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVLH-14A-01D A41567 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41567	SRX590837	"Specific Capture analysis of normal sample TARGET-20-PARVLH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARVLH-14A-01D A41567 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41567_1_lane_dupsFlagged.bam	SRR1379801	@dbgap@:reads/SRP012000/SRS634727/SRX590837/SRR1379801/SRR1379801.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVLH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVLH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARVLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVLH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVLH-14A-01D	DNA	EFO	SRS634727	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVLH-14A-01D A41567 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41567	SRX590837	"Specific Capture analysis of normal sample TARGET-20-PARVLH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARVLH-14A-01D A41567 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41567_1_lane_dupsFlagged.bam	SRR1379801	@dbgap@:reads/SRP012000/SRS634727/SRX590837/SRR1379801/SRR1379801.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVLH-09A-01D_TARGET-20-PARVLH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVLH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVLH-14A-01D	DNA	EFO	SRS634727	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVLH-14A-01D A41567 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41567	SRX590837	"Specific Capture analysis of normal sample TARGET-20-PARVLH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARVLH-14A-01D A41567 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41567_1_lane_dupsFlagged.bam	SRR1379801	@dbgap@:reads/SRP012000/SRS634727/SRX590837/SRR1379801/SRR1379801.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVLH-09A-01D_TARGET-20-PARVLH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVSF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVSF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVSF-09A-01D	DNA	EFO	SRS628755	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVSF-09A-01D A32224 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32224	SRX574451	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVSF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARVSF-09A-01D A32224 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32224_1_lane_dupsFlagged.bam	SRR1344919	@dbgap@:reads/SRP012000/SRS628755/SRX574451/SRR1344919/SRR1344919.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVSF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVSF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARVSF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVSF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVSF-09A-01D	DNA	EFO	SRS628755	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVSF-09A-01D A32224 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32224	SRX574451	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVSF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARVSF-09A-01D A32224 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32224_1_lane_dupsFlagged.bam	SRR1344919	@dbgap@:reads/SRP012000/SRS628755/SRX574451/SRR1344919/SRR1344919.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVSF-09A-01D_TARGET-20-PARVSF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVSF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVSF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVSF-09A-01D	DNA	EFO	SRS628755	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVSF-09A-01D A32224 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32224	SRX574451	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVSF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARVSF-09A-01D A32224 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32224_1_lane_dupsFlagged.bam	SRR1344919	@dbgap@:reads/SRP012000/SRS628755/SRX574451/SRR1344919/SRR1344919.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVSF-09A-01D_TARGET-20-PARVSF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVSF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVSF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVSF-14A-01D	DNA	EFO	SRS637406	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVSF-14A-01D A42801 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42801	SRX597814	"Specific Capture analysis of normal sample TARGET-20-PARVSF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARVSF-14A-01D A42801 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42801_1_lane_dupsFlagged.bam	SRR1395060	@dbgap@:reads/SRP012000/SRS637406/SRX597814/SRR1395060/SRR1395060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVSF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVSF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARVSF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVSF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVSF-14A-01D	DNA	EFO	SRS637406	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVSF-14A-01D A42801 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42801	SRX597814	"Specific Capture analysis of normal sample TARGET-20-PARVSF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARVSF-14A-01D A42801 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42801_1_lane_dupsFlagged.bam	SRR1395060	@dbgap@:reads/SRP012000/SRS637406/SRX597814/SRR1395060/SRR1395060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVSF-09A-01D_TARGET-20-PARVSF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVSF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVSF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVSF-14A-01D	DNA	EFO	SRS637406	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVSF-14A-01D A42801 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42801	SRX597814	"Specific Capture analysis of normal sample TARGET-20-PARVSF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARVSF-14A-01D A42801 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42801_1_lane_dupsFlagged.bam	SRR1395060	@dbgap@:reads/SRP012000/SRS637406/SRX597814/SRR1395060/SRR1395060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVSF-09A-01D_TARGET-20-PARVSF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVSX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVSX-03A-01D	DNA	EFO	SRS633669	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVSX-03A-01D A33402 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33402	SRX587963	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVSX-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARVSX-03A-01D A33402 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33402_1_lane_dupsFlagged.bam	SRR1373840	@dbgap@:reads/SRP012000/SRS633669/SRX587963/SRR1373840/SRR1373840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVSX-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVSX-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARVSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVSX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVSX-03A-01D	DNA	EFO	SRS633669	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVSX-03A-01D A33402 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33402	SRX587963	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVSX-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARVSX-03A-01D A33402 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33402_1_lane_dupsFlagged.bam	SRR1373840	@dbgap@:reads/SRP012000/SRS633669/SRX587963/SRR1373840/SRR1373840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVSX-03A-01D_TARGET-20-PARVSX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVSX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVSX-03A-01D	DNA	EFO	SRS633669	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVSX-03A-01D A33402 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33402	SRX587963	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVSX-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARVSX-03A-01D A33402 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33402_1_lane_dupsFlagged.bam	SRR1373840	@dbgap@:reads/SRP012000/SRS633669/SRX587963/SRR1373840/SRR1373840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVSX-03A-01D_TARGET-20-PARVSX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVSX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVSX-14A-01D	DNA	EFO	SRS637399	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVSX-14A-01D A42847 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42847	SRX597807	"Specific Capture analysis of normal sample TARGET-20-PARVSX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARVSX-14A-01D A42847 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42847_1_lane_dupsFlagged.bam	SRR1395079	@dbgap@:reads/SRP012000/SRS637399/SRX597807/SRR1395079/SRR1395079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVSX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVSX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARVSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVSX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVSX-14A-01D	DNA	EFO	SRS637399	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVSX-14A-01D A42847 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42847	SRX597807	"Specific Capture analysis of normal sample TARGET-20-PARVSX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARVSX-14A-01D A42847 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42847_1_lane_dupsFlagged.bam	SRR1395079	@dbgap@:reads/SRP012000/SRS637399/SRX597807/SRR1395079/SRR1395079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVSX-03A-01D_TARGET-20-PARVSX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVSX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVSX-14A-01D	DNA	EFO	SRS637399	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVSX-14A-01D A42847 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42847	SRX597807	"Specific Capture analysis of normal sample TARGET-20-PARVSX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARVSX-14A-01D A42847 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42847_1_lane_dupsFlagged.bam	SRR1395079	@dbgap@:reads/SRP012000/SRS637399/SRX597807/SRR1395079/SRR1395079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVSX-03A-01D_TARGET-20-PARVSX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVTI-09A-01D	DNA	EFO	SRS635479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVTI-09A-01D A41765 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41765	SRX593202	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVTI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARVTI-09A-01D A41765 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41765_1_lane_dupsFlagged.bam	SRR1385613	@dbgap@:reads/SRP012000/SRS635479/SRX593202/SRR1385613/SRR1385613.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVTI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVTI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARVTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVTI-09A-01D	DNA	EFO	SRS635479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVTI-09A-01D A41765 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41765	SRX593202	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVTI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARVTI-09A-01D A41765 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41765_1_lane_dupsFlagged.bam	SRR1385613	@dbgap@:reads/SRP012000/SRS635479/SRX593202/SRR1385613/SRR1385613.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVTI-09A-01D_TARGET-20-PARVTI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVTI-09A-01D	DNA	EFO	SRS635479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVTI-09A-01D A41765 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41765	SRX593202	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVTI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARVTI-09A-01D A41765 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41765_1_lane_dupsFlagged.bam	SRR1385613	@dbgap@:reads/SRP012000/SRS635479/SRX593202/SRR1385613/SRR1385613.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVTI-09A-01D_TARGET-20-PARVTI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVTI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVTI-14A-01D	DNA	EFO	SRS634700	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVTI-14A-01D A41569 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41569	SRX590802	"Specific Capture analysis of normal sample TARGET-20-PARVTI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARVTI-14A-01D A41569 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41569_1_lane_dupsFlagged.bam	SRR1379855	@dbgap@:reads/SRP012000/SRS634700/SRX590802/SRR1379855/SRR1379855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVTI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVTI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARVTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVTI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVTI-14A-01D	DNA	EFO	SRS634700	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVTI-14A-01D A41569 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41569	SRX590802	"Specific Capture analysis of normal sample TARGET-20-PARVTI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARVTI-14A-01D A41569 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41569_1_lane_dupsFlagged.bam	SRR1379855	@dbgap@:reads/SRP012000/SRS634700/SRX590802/SRR1379855/SRR1379855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVTI-09A-01D_TARGET-20-PARVTI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVTI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVTI-14A-01D	DNA	EFO	SRS634700	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVTI-14A-01D A41569 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41569	SRX590802	"Specific Capture analysis of normal sample TARGET-20-PARVTI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARVTI-14A-01D A41569 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41569_1_lane_dupsFlagged.bam	SRR1379855	@dbgap@:reads/SRP012000/SRS634700/SRX590802/SRR1379855/SRR1379855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVTI-09A-01D_TARGET-20-PARVTI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-03A-02D	DNA	EFO	SRS628758	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVUA-03A-02D A32225 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32225	SRX574454	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVUA-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARVUA-03A-02D A32225 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32225_1_lane_dupsFlagged.bam	SRR1344863	@dbgap@:reads/SRP012000/SRS628758/SRX574454/SRR1344863/SRR1344863.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVUA-03A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVUA-03A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-04A-02D	DNA	EFO	SRS637338	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVUA-04A-02D A42214 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42214	SRX597727	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVUA-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARVUA-04A-02D A42214 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42214_1_lane_dupsFlagged.bam	SRR1394986	@dbgap@:reads/SRP012000/SRS637338/SRX597727/SRR1394986/SRR1394986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVUA-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVUA-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARVUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVUC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUC-03A-01D	DNA	EFO	SRS635487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVUC-03A-01D A41766 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41766	SRX593209	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVUC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARVUC-03A-01D A41766 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41766_1_lane_dupsFlagged.bam	SRR1385588	@dbgap@:reads/SRP012000/SRS635487/SRX593209/SRR1385588/SRR1385588.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVUC-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVUC-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARVUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVUC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUC-03A-01D	DNA	EFO	SRS635487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVUC-03A-01D A41766 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41766	SRX593209	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVUC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARVUC-03A-01D A41766 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41766_1_lane_dupsFlagged.bam	SRR1385588	@dbgap@:reads/SRP012000/SRS635487/SRX593209/SRR1385588/SRR1385588.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVUC-03A-01D_TARGET-20-PARVUC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVUC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUC-03A-01D	DNA	EFO	SRS635487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVUC-03A-01D A41766 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41766	SRX593209	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVUC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARVUC-03A-01D A41766 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41766_1_lane_dupsFlagged.bam	SRR1385588	@dbgap@:reads/SRP012000/SRS635487/SRX593209/SRR1385588/SRR1385588.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVUC-03A-01D_TARGET-20-PARVUC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVUC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUC-14A-01D	DNA	EFO	SRS637430	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVUC-14A-01D A42802 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42802	SRX597839	"Specific Capture analysis of normal sample TARGET-20-PARVUC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARVUC-14A-01D A42802 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42802_1_lane_dupsFlagged.bam	SRR1395064	@dbgap@:reads/SRP012000/SRS637430/SRX597839/SRR1395064/SRR1395064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVUC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVUC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARVUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVUC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUC-14A-01D	DNA	EFO	SRS637430	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVUC-14A-01D A42802 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42802	SRX597839	"Specific Capture analysis of normal sample TARGET-20-PARVUC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARVUC-14A-01D A42802 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42802_1_lane_dupsFlagged.bam	SRR1395064	@dbgap@:reads/SRP012000/SRS637430/SRX597839/SRR1395064/SRR1395064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVUC-03A-01D_TARGET-20-PARVUC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVUC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUC-14A-01D	DNA	EFO	SRS637430	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVUC-14A-01D A42802 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42802	SRX597839	"Specific Capture analysis of normal sample TARGET-20-PARVUC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARVUC-14A-01D A42802 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42802_1_lane_dupsFlagged.bam	SRR1395064	@dbgap@:reads/SRP012000/SRS637430/SRX597839/SRR1395064/SRR1395064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVUC-03A-01D_TARGET-20-PARVUC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVXT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVXT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVXT-09A-01D	DNA	EFO	SRS633667	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVXT-09A-01D A33403 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33403	SRX587960	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVXT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARVXT-09A-01D A33403 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33403_1_lane_dupsFlagged.bam	SRR1373772	@dbgap@:reads/SRP012000/SRS633667/SRX587960/SRR1373772/SRR1373772.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVXT-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVXT-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARVXT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVXT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVXT-09A-01D	DNA	EFO	SRS633667	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVXT-09A-01D A33403 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33403	SRX587960	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVXT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARVXT-09A-01D A33403 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33403_1_lane_dupsFlagged.bam	SRR1373772	@dbgap@:reads/SRP012000/SRS633667/SRX587960/SRR1373772/SRR1373772.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVXT-09A-01D_TARGET-20-PARVXT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVXT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVXT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVXT-09A-01D	DNA	EFO	SRS633667	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVXT-09A-01D A33403 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33403	SRX587960	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVXT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARVXT-09A-01D A33403 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33403_1_lane_dupsFlagged.bam	SRR1373772	@dbgap@:reads/SRP012000/SRS633667/SRX587960/SRR1373772/SRR1373772.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVXT-09A-01D_TARGET-20-PARVXT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVXT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVXT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVXT-14A-01D	DNA	EFO	SRS635905	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVXT-14A-01D A42479 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42479	SRX593865	"Specific Capture analysis of normal sample TARGET-20-PARVXT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARVXT-14A-01D A42479 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42479_1_lane_dupsFlagged.bam	SRR1386404	@dbgap@:reads/SRP012000/SRS635905/SRX593865/SRR1386404/SRR1386404.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVXT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVXT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARVXT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVXT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVXT-14A-01D	DNA	EFO	SRS635905	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVXT-14A-01D A42479 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42479	SRX593865	"Specific Capture analysis of normal sample TARGET-20-PARVXT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARVXT-14A-01D A42479 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42479_1_lane_dupsFlagged.bam	SRR1386404	@dbgap@:reads/SRP012000/SRS635905/SRX593865/SRR1386404/SRR1386404.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVXT-09A-01D_TARGET-20-PARVXT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVXT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVXT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVXT-14A-01D	DNA	EFO	SRS635905	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVXT-14A-01D A42479 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42479	SRX593865	"Specific Capture analysis of normal sample TARGET-20-PARVXT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARVXT-14A-01D A42479 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42479_1_lane_dupsFlagged.bam	SRR1386404	@dbgap@:reads/SRP012000/SRS635905/SRX593865/SRR1386404/SRR1386404.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVXT-09A-01D_TARGET-20-PARVXT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVZU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVZU-03A-01D	DNA	EFO	SRS633703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVZU-03A-01D A33404 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33404	SRX587996	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVZU-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARVZU-03A-01D A33404 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33404_1_lane_dupsFlagged.bam	SRR1373853	@dbgap@:reads/SRP012000/SRS633703/SRX587996/SRR1373853/SRR1373853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVZU-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVZU-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARVZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVZU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVZU-03A-01D	DNA	EFO	SRS633703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVZU-03A-01D A33404 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33404	SRX587996	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVZU-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARVZU-03A-01D A33404 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33404_1_lane_dupsFlagged.bam	SRR1373853	@dbgap@:reads/SRP012000/SRS633703/SRX587996/SRR1373853/SRR1373853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVZU-03A-01D_TARGET-20-PARVZU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVZU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVZU-03A-01D	DNA	EFO	SRS633703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVZU-03A-01D A33404 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33404	SRX587996	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARVZU-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARVZU-03A-01D A33404 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33404_1_lane_dupsFlagged.bam	SRR1373853	@dbgap@:reads/SRP012000/SRS633703/SRX587996/SRR1373853/SRR1373853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVZU-03A-01D_TARGET-20-PARVZU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARVZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVZU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVZU-14A-01D	DNA	EFO	SRS634682	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVZU-14A-01D A41568 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41568	SRX590779	"Specific Capture analysis of normal sample TARGET-20-PARVZU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARVZU-14A-01D A41568 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41568_1_lane_dupsFlagged.bam	SRR1379880	@dbgap@:reads/SRP012000/SRS634682/SRX590779/SRR1379880/SRR1379880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARVZU-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARVZU-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARVZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVZU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVZU-14A-01D	DNA	EFO	SRS634682	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVZU-14A-01D A41568 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41568	SRX590779	"Specific Capture analysis of normal sample TARGET-20-PARVZU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARVZU-14A-01D A41568 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41568_1_lane_dupsFlagged.bam	SRR1379880	@dbgap@:reads/SRP012000/SRS634682/SRX590779/SRR1379880/SRR1379880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVZU-03A-01D_TARGET-20-PARVZU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARVZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARVZU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVZU-14A-01D	DNA	EFO	SRS634682	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVZU-14A-01D A41568 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41568	SRX590779	"Specific Capture analysis of normal sample TARGET-20-PARVZU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARVZU-14A-01D A41568 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41568_1_lane_dupsFlagged.bam	SRR1379880	@dbgap@:reads/SRP012000/SRS634682/SRX590779/SRR1379880/SRR1379880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARVZU-03A-01D_TARGET-20-PARVZU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARWCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARWCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWCG-09A-01D	DNA	EFO	SRS635531	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWCG-09A-01D A41818 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41818	SRX593309	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARWCG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARWCG-09A-01D A41818 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41818_1_lane_dupsFlagged.bam	SRR1385843	@dbgap@:reads/SRP012000/SRS635531/SRX593309/SRR1385843/SRR1385843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARWCG-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARWCG-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARWCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARWCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWCG-09A-01D	DNA	EFO	SRS635531	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWCG-09A-01D A41818 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41818	SRX593309	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARWCG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARWCG-09A-01D A41818 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41818_1_lane_dupsFlagged.bam	SRR1385843	@dbgap@:reads/SRP012000/SRS635531/SRX593309/SRR1385843/SRR1385843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWCG-09A-01D_TARGET-20-PARWCG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARWCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARWCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWCG-09A-01D	DNA	EFO	SRS635531	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWCG-09A-01D A41818 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41818	SRX593309	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARWCG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARWCG-09A-01D A41818 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41818_1_lane_dupsFlagged.bam	SRR1385843	@dbgap@:reads/SRP012000/SRS635531/SRX593309/SRR1385843/SRR1385843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWCG-09A-01D_TARGET-20-PARWCG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARWCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARWCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWCG-14A-01D	DNA	EFO	SRS634689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWCG-14A-01D A41571 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41571	SRX590789	"Specific Capture analysis of normal sample TARGET-20-PARWCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARWCG-14A-01D A41571 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41571_1_lane_dupsFlagged.bam	SRR1379877	@dbgap@:reads/SRP012000/SRS634689/SRX590789/SRR1379877/SRR1379877.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARWCG-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARWCG-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARWCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARWCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWCG-14A-01D	DNA	EFO	SRS634689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWCG-14A-01D A41571 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41571	SRX590789	"Specific Capture analysis of normal sample TARGET-20-PARWCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARWCG-14A-01D A41571 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41571_1_lane_dupsFlagged.bam	SRR1379877	@dbgap@:reads/SRP012000/SRS634689/SRX590789/SRR1379877/SRR1379877.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWCG-09A-01D_TARGET-20-PARWCG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARWCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARWCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWCG-14A-01D	DNA	EFO	SRS634689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWCG-14A-01D A41571 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41571	SRX590789	"Specific Capture analysis of normal sample TARGET-20-PARWCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARWCG-14A-01D A41571 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41571_1_lane_dupsFlagged.bam	SRR1379877	@dbgap@:reads/SRP012000/SRS634689/SRX590789/SRR1379877/SRR1379877.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWCG-09A-01D_TARGET-20-PARWCG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-04A-01D	DNA	EFO	SRS301111	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWDZ-04A-01D A42713 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42713	SRX597962	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARWDZ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARWDZ-04A-01D A42713 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42713_1_lane_dupsFlagged.bam	SRR1395287	@dbgap@:reads/SRP012000/SRS301111/SRX597962/SRR1395287/SRR1395287.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARWDZ-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARWDZ-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-04A-01D	DNA	EFO	SRS301111	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWDZ-04A-01D A42713 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42713	SRX597962	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARWDZ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARWDZ-04A-01D A42713 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42713_1_lane_dupsFlagged.bam	SRR1395287	@dbgap@:reads/SRP012000/SRS301111/SRX597962/SRR1395287/SRR1395287.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWDZ-04A-01D_TARGET-20-PARWDZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-04A-01D	DNA	EFO	SRS301111	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWDZ-04A-01D A42713 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42713	SRX597962	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARWDZ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARWDZ-04A-01D A42713 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42713_1_lane_dupsFlagged.bam	SRR1395287	@dbgap@:reads/SRP012000/SRS301111/SRX597962/SRR1395287/SRR1395287.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWDZ-04A-01D_TARGET-20-PARWDZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-02D	DNA	EFO	SRS628724	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWDZ-09A-02D A32226 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32226	SRX574419	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARWDZ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARWDZ-09A-02D A32226 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32226_1_lane_dupsFlagged.bam	SRR1344895	@dbgap@:reads/SRP012000/SRS628724/SRX574419/SRR1344895/SRR1344895.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARWDZ-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARWDZ-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-02D	DNA	EFO	SRS628724	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWDZ-09A-02D A32226 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32226	SRX574419	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARWDZ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARWDZ-09A-02D A32226 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32226_1_lane_dupsFlagged.bam	SRR1344895	@dbgap@:reads/SRP012000/SRS628724/SRX574419/SRR1344895/SRR1344895.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWDZ-09A-02D_TARGET-20-PARWDZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-02D	DNA	EFO	SRS628724	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWDZ-09A-02D A32226 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32226	SRX574419	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARWDZ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARWDZ-09A-02D A32226 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32226_1_lane_dupsFlagged.bam	SRR1344895	@dbgap@:reads/SRP012000/SRS628724/SRX574419/SRR1344895/SRR1344895.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWDZ-09A-02D_TARGET-20-PARWDZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWDZ-14A-01D A41570 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41570	SRX590868	"Specific Capture analysis of normal sample TARGET-20-PARWDZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARWDZ-14A-01D A41570 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41570_1_lane_dupsFlagged.bam	SRR1379794	@dbgap@:reads/SRP012000/SRS301113/SRX590868/SRR1379794/SRR1379794.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARWDZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARWDZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWDZ-14A-01D A41570 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41570	SRX590868	"Specific Capture analysis of normal sample TARGET-20-PARWDZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARWDZ-14A-01D A41570 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41570_1_lane_dupsFlagged.bam	SRR1379794	@dbgap@:reads/SRP012000/SRS301113/SRX590868/SRR1379794/SRR1379794.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWDZ-04A-01D_TARGET-20-PARWDZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWDZ-14A-01D A41570 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41570	SRX590868	"Specific Capture analysis of normal sample TARGET-20-PARWDZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARWDZ-14A-01D A41570 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41570_1_lane_dupsFlagged.bam	SRR1379794	@dbgap@:reads/SRP012000/SRS301113/SRX590868/SRR1379794/SRR1379794.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWDZ-04A-01D_TARGET-20-PARWDZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWDZ-14A-01D A41570 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41570	SRX590868	"Specific Capture analysis of normal sample TARGET-20-PARWDZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARWDZ-14A-01D A41570 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41570_1_lane_dupsFlagged.bam	SRR1379794	@dbgap@:reads/SRP012000/SRS301113/SRX590868/SRR1379794/SRR1379794.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWDZ-09A-02D_TARGET-20-PARWDZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-14A-01D	DNA	EFO	SRS301113	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWDZ-14A-01D A41570 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41570	SRX590868	"Specific Capture analysis of normal sample TARGET-20-PARWDZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARWDZ-14A-01D A41570 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41570_1_lane_dupsFlagged.bam	SRR1379794	@dbgap@:reads/SRP012000/SRS301113/SRX590868/SRR1379794/SRR1379794.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWDZ-09A-02D_TARGET-20-PARWDZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARWNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARWNS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWNS-09A-01D	DNA	EFO	SRS633658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWNS-09A-01D A33405 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33405	SRX587952	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARWNS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARWNS-09A-01D A33405 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33405_1_lane_dupsFlagged.bam	SRR1373770	@dbgap@:reads/SRP012000/SRS633658/SRX587952/SRR1373770/SRR1373770.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARWNS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARWNS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARWWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARWWW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWWW-03A-01D	DNA	EFO	SRS635454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWWW-03A-01D A41735 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41735	SRX593176	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARWWW-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARWWW-03A-01D A41735 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41735_1_lane_dupsFlagged.bam	SRR1385647	@dbgap@:reads/SRP012000/SRS635454/SRX593176/SRR1385647/SRR1385647.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARWWW-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARWWW-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARWWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARWWW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWWW-03A-01D	DNA	EFO	SRS635454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWWW-03A-01D A41735 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41735	SRX593176	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARWWW-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARWWW-03A-01D A41735 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41735_1_lane_dupsFlagged.bam	SRR1385647	@dbgap@:reads/SRP012000/SRS635454/SRX593176/SRR1385647/SRR1385647.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWWW-03A-01D_TARGET-20-PARWWW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARWWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARWWW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWWW-03A-01D	DNA	EFO	SRS635454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWWW-03A-01D A41735 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41735	SRX593176	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARWWW-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARWWW-03A-01D A41735 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41735_1_lane_dupsFlagged.bam	SRR1385647	@dbgap@:reads/SRP012000/SRS635454/SRX593176/SRR1385647/SRR1385647.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWWW-03A-01D_TARGET-20-PARWWW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARWWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARWWW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWWW-14A-01D	DNA	EFO	SRS634733	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWWW-14A-01D A41572 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41572	SRX590845	"Specific Capture analysis of normal sample TARGET-20-PARWWW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARWWW-14A-01D A41572 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41572_1_lane_dupsFlagged.bam	SRR1379870	@dbgap@:reads/SRP012000/SRS634733/SRX590845/SRR1379870/SRR1379870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARWWW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARWWW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARWWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARWWW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWWW-14A-01D	DNA	EFO	SRS634733	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWWW-14A-01D A41572 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41572	SRX590845	"Specific Capture analysis of normal sample TARGET-20-PARWWW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARWWW-14A-01D A41572 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41572_1_lane_dupsFlagged.bam	SRR1379870	@dbgap@:reads/SRP012000/SRS634733/SRX590845/SRR1379870/SRR1379870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWWW-03A-01D_TARGET-20-PARWWW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARWWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARWWW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWWW-14A-01D	DNA	EFO	SRS634733	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWWW-14A-01D A41572 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41572	SRX590845	"Specific Capture analysis of normal sample TARGET-20-PARWWW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARWWW-14A-01D A41572 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41572_1_lane_dupsFlagged.bam	SRR1379870	@dbgap@:reads/SRP012000/SRS634733/SRX590845/SRR1379870/SRR1379870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWWW-03A-01D_TARGET-20-PARWWW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-09A-01D	DNA	EFO	SRS287506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWXU-09A-01D A31237 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31237	SRX573376	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARWXU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARWXU-09A-01D A31237 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31237_1_lane_dupsFlagged.bam	SRR1342689	@dbgap@:reads/SRP012000/SRS287506/SRX573376/SRR1342689/SRR1342689.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARWXU-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARWXU-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-09A-01D	DNA	EFO	SRS287506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWXU-09A-01D A31237 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31237	SRX573376	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARWXU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARWXU-09A-01D A31237 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31237_1_lane_dupsFlagged.bam	SRR1342689	@dbgap@:reads/SRP012000/SRS287506/SRX573376/SRR1342689/SRR1342689.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWXU-09A-01D_TARGET-20-PARWXU-10A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-09A-01D	DNA	EFO	SRS287506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWXU-09A-01D A31237 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31237	SRX573376	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARWXU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARWXU-09A-01D A31237 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31237_1_lane_dupsFlagged.bam	SRR1342689	@dbgap@:reads/SRP012000/SRS287506/SRX573376/SRR1342689/SRR1342689.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWXU-09A-01D_TARGET-20-PARWXU-10A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-10A-02D	DNA	EFO	SRS635708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWXU-10A-02D A41677 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41677	SRX593532	"Specific Capture analysis of normal sample TARGET-20-PARWXU-10A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARWXU-10A-02D A41677 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41677_1_lane_dupsFlagged.bam	SRR1385999	@dbgap@:reads/SRP012000/SRS635708/SRX593532/SRR1385999/SRR1385999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARWXU-10A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARWXU-10A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-10A-02D	DNA	EFO	SRS635708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWXU-10A-02D A41677 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41677	SRX593532	"Specific Capture analysis of normal sample TARGET-20-PARWXU-10A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARWXU-10A-02D A41677 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41677_1_lane_dupsFlagged.bam	SRR1385999	@dbgap@:reads/SRP012000/SRS635708/SRX593532/SRR1385999/SRR1385999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWXU-09A-01D_TARGET-20-PARWXU-10A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-10A-02D	DNA	EFO	SRS635708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWXU-10A-02D A41677 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41677	SRX593532	"Specific Capture analysis of normal sample TARGET-20-PARWXU-10A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARWXU-10A-02D A41677 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41677_1_lane_dupsFlagged.bam	SRR1385999	@dbgap@:reads/SRP012000/SRS635708/SRX593532/SRR1385999/SRR1385999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWXU-09A-01D_TARGET-20-PARWXU-10A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-10A-02D	DNA	EFO	SRS635708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWXU-10A-02D A41677 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41677	SRX593532	"Specific Capture analysis of normal sample TARGET-20-PARWXU-10A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARWXU-10A-02D A41677 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41677_1_lane_dupsFlagged.bam	SRR1385999	@dbgap@:reads/SRP012000/SRS635708/SRX593532/SRR1385999/SRR1385999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWXU-40A-01D_TARGET-20-PARWXU-10A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-10A-02D	DNA	EFO	SRS635708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWXU-10A-02D A41677 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41677	SRX593532	"Specific Capture analysis of normal sample TARGET-20-PARWXU-10A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARWXU-10A-02D A41677 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41677_1_lane_dupsFlagged.bam	SRR1385999	@dbgap@:reads/SRP012000/SRS635708/SRX593532/SRR1385999/SRR1385999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWXU-40A-01D_TARGET-20-PARWXU-10A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-40A-01D	DNA	EFO	SRS637351	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWXU-40A-01D A42232 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42232	SRX597752	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARWXU-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARWXU-40A-01D A42232 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42232_1_lane_dupsFlagged.bam	SRR1395039	@dbgap@:reads/SRP012000/SRS637351/SRX597752/SRR1395039/SRR1395039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARWXU-40A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARWXU-40A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-40A-01D	DNA	EFO	SRS637351	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWXU-40A-01D A42232 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42232	SRX597752	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARWXU-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARWXU-40A-01D A42232 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42232_1_lane_dupsFlagged.bam	SRR1395039	@dbgap@:reads/SRP012000/SRS637351/SRX597752/SRR1395039/SRR1395039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWXU-40A-01D_TARGET-20-PARWXU-10A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-40A-01D	DNA	EFO	SRS637351	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWXU-40A-01D A42232 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42232	SRX597752	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARWXU-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARWXU-40A-01D A42232 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42232_1_lane_dupsFlagged.bam	SRR1395039	@dbgap@:reads/SRP012000/SRS637351/SRX597752/SRR1395039/SRR1395039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARWXU-40A-01D_TARGET-20-PARWXU-10A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-03A-01D	DNA	EFO	SRS628746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXBT-03A-01D A32227 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32227	SRX574442	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXBT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARXBT-03A-01D A32227 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32227_1_lane_dupsFlagged.bam	SRR1344908	@dbgap@:reads/SRP012000/SRS628746/SRX574442/SRR1344908/SRR1344908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXBT-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXBT-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-03A-01D	DNA	EFO	SRS628746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXBT-03A-01D A32227 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32227	SRX574442	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXBT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARXBT-03A-01D A32227 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32227_1_lane_dupsFlagged.bam	SRR1344908	@dbgap@:reads/SRP012000/SRS628746/SRX574442/SRR1344908/SRR1344908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXBT-03A-01D_TARGET-20-PARXBT-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-03A-01D	DNA	EFO	SRS628746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXBT-03A-01D A32227 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32227	SRX574442	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXBT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARXBT-03A-01D A32227 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32227_1_lane_dupsFlagged.bam	SRR1344908	@dbgap@:reads/SRP012000/SRS628746/SRX574442/SRR1344908/SRR1344908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXBT-03A-01D_TARGET-20-PARXBT-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-14A-03D	DNA	EFO	SRS635877	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXBT-14A-03D A42508 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42508	SRX593837	"Specific Capture analysis of normal sample TARGET-20-PARXBT-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARXBT-14A-03D A42508 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42508_1_lane_dupsFlagged.bam	SRR1386322	@dbgap@:reads/SRP012000/SRS635877/SRX593837/SRR1386322/SRR1386322.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXBT-14A-03D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXBT-14A-03D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-14A-03D	DNA	EFO	SRS635877	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXBT-14A-03D A42508 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42508	SRX593837	"Specific Capture analysis of normal sample TARGET-20-PARXBT-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARXBT-14A-03D A42508 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42508_1_lane_dupsFlagged.bam	SRR1386322	@dbgap@:reads/SRP012000/SRS635877/SRX593837/SRR1386322/SRR1386322.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXBT-03A-01D_TARGET-20-PARXBT-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-14A-03D	DNA	EFO	SRS635877	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXBT-14A-03D A42508 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42508	SRX593837	"Specific Capture analysis of normal sample TARGET-20-PARXBT-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARXBT-14A-03D A42508 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42508_1_lane_dupsFlagged.bam	SRR1386322	@dbgap@:reads/SRP012000/SRS635877/SRX593837/SRR1386322/SRR1386322.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXBT-03A-01D_TARGET-20-PARXBT-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXCG-09A-02D	DNA	EFO	SRS628742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXCG-09A-02D A32228 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32228	SRX574437	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXCG-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARXCG-09A-02D A32228 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32228_1_lane_dupsFlagged.bam	SRR1344899	@dbgap@:reads/SRP012000/SRS628742/SRX574437/SRR1344899/SRR1344899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXCG-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXCG-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARXCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXCG-09A-02D	DNA	EFO	SRS628742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXCG-09A-02D A32228 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32228	SRX574437	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXCG-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARXCG-09A-02D A32228 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32228_1_lane_dupsFlagged.bam	SRR1344899	@dbgap@:reads/SRP012000/SRS628742/SRX574437/SRR1344899/SRR1344899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXCG-09A-02D_TARGET-20-PARXCG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXCG-09A-02D	DNA	EFO	SRS628742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXCG-09A-02D A32228 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32228	SRX574437	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXCG-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARXCG-09A-02D A32228 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32228_1_lane_dupsFlagged.bam	SRR1344899	@dbgap@:reads/SRP012000/SRS628742/SRX574437/SRR1344899/SRR1344899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXCG-09A-02D_TARGET-20-PARXCG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXCG-14A-01D	DNA	EFO	SRS635942	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXCG-14A-01D A42481 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42481	SRX593902	"Specific Capture analysis of normal sample TARGET-20-PARXCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARXCG-14A-01D A42481 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42481_1_lane_dupsFlagged.bam	SRR1386406	@dbgap@:reads/SRP012000/SRS635942/SRX593902/SRR1386406/SRR1386406.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXCG-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXCG-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARXCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXCG-14A-01D	DNA	EFO	SRS635942	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXCG-14A-01D A42481 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42481	SRX593902	"Specific Capture analysis of normal sample TARGET-20-PARXCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARXCG-14A-01D A42481 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42481_1_lane_dupsFlagged.bam	SRR1386406	@dbgap@:reads/SRP012000/SRS635942/SRX593902/SRR1386406/SRR1386406.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXCG-09A-02D_TARGET-20-PARXCG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXCG-14A-01D	DNA	EFO	SRS635942	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXCG-14A-01D A42481 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42481	SRX593902	"Specific Capture analysis of normal sample TARGET-20-PARXCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARXCG-14A-01D A42481 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42481_1_lane_dupsFlagged.bam	SRR1386406	@dbgap@:reads/SRP012000/SRS635942/SRX593902/SRR1386406/SRR1386406.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXCG-09A-02D_TARGET-20-PARXCG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXDI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXDI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXDI-09A-01D	DNA	EFO	SRS633660	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXDI-09A-01D A33406 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33406	SRX587954	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXDI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARXDI-09A-01D A33406 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33406_1_lane_dupsFlagged.bam	SRR1373822	@dbgap@:reads/SRP012000/SRS633660/SRX587954/SRR1373822/SRR1373822.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXDI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXDI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARXDI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXDI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXDI-09A-01D	DNA	EFO	SRS633660	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXDI-09A-01D A33406 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33406	SRX587954	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXDI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARXDI-09A-01D A33406 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33406_1_lane_dupsFlagged.bam	SRR1373822	@dbgap@:reads/SRP012000/SRS633660/SRX587954/SRR1373822/SRR1373822.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXDI-09A-01D_TARGET-20-PARXDI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXDI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXDI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXDI-09A-01D	DNA	EFO	SRS633660	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXDI-09A-01D A33406 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33406	SRX587954	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXDI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARXDI-09A-01D A33406 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33406_1_lane_dupsFlagged.bam	SRR1373822	@dbgap@:reads/SRP012000/SRS633660/SRX587954/SRR1373822/SRR1373822.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXDI-09A-01D_TARGET-20-PARXDI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXDI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXDI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXDI-14A-01D	DNA	EFO	SRS635998	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXDI-14A-01D A42595 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42595	SRX593965	"Specific Capture analysis of normal sample TARGET-20-PARXDI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARXDI-14A-01D A42595 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42595_1_lane_dupsFlagged.bam	SRR1386425	@dbgap@:reads/SRP012000/SRS635998/SRX593965/SRR1386425/SRR1386425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXDI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXDI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARXDI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXDI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXDI-14A-01D	DNA	EFO	SRS635998	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXDI-14A-01D A42595 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42595	SRX593965	"Specific Capture analysis of normal sample TARGET-20-PARXDI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARXDI-14A-01D A42595 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42595_1_lane_dupsFlagged.bam	SRR1386425	@dbgap@:reads/SRP012000/SRS635998/SRX593965/SRR1386425/SRR1386425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXDI-09A-01D_TARGET-20-PARXDI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXDI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXDI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXDI-14A-01D	DNA	EFO	SRS635998	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXDI-14A-01D A42595 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42595	SRX593965	"Specific Capture analysis of normal sample TARGET-20-PARXDI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARXDI-14A-01D A42595 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42595_1_lane_dupsFlagged.bam	SRR1386425	@dbgap@:reads/SRP012000/SRS635998/SRX593965/SRR1386425/SRR1386425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXDI-09A-01D_TARGET-20-PARXDI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXEC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXEC-09A-02D	DNA	EFO	SRS628956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXEC-09A-02D A32315 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32315	SRX575013	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXEC-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARXEC-09A-02D A32315 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32315_1_lane_dupsFlagged.bam	SRR1346173	@dbgap@:reads/SRP012000/SRS628956/SRX575013/SRR1346173/SRR1346173.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXEC-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXEC-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARXEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXEC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXEC-09A-02D	DNA	EFO	SRS628956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXEC-09A-02D A32315 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32315	SRX575013	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXEC-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARXEC-09A-02D A32315 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32315_1_lane_dupsFlagged.bam	SRR1346173	@dbgap@:reads/SRP012000/SRS628956/SRX575013/SRR1346173/SRR1346173.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXEC-09A-02D_TARGET-20-PARXEC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXEC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXEC-09A-02D	DNA	EFO	SRS628956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXEC-09A-02D A32315 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32315	SRX575013	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXEC-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARXEC-09A-02D A32315 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32315_1_lane_dupsFlagged.bam	SRR1346173	@dbgap@:reads/SRP012000/SRS628956/SRX575013/SRR1346173/SRR1346173.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXEC-09A-02D_TARGET-20-PARXEC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXEC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXEC-14A-01D	DNA	EFO	SRS634730	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXEC-14A-01D A41573 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41573	SRX590840	"Specific Capture analysis of normal sample TARGET-20-PARXEC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARXEC-14A-01D A41573 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41573_1_lane_dupsFlagged.bam	SRR1379835	@dbgap@:reads/SRP012000/SRS634730/SRX590840/SRR1379835/SRR1379835.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXEC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXEC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARXEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXEC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXEC-14A-01D	DNA	EFO	SRS634730	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXEC-14A-01D A41573 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41573	SRX590840	"Specific Capture analysis of normal sample TARGET-20-PARXEC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARXEC-14A-01D A41573 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41573_1_lane_dupsFlagged.bam	SRR1379835	@dbgap@:reads/SRP012000/SRS634730/SRX590840/SRR1379835/SRR1379835.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXEC-09A-02D_TARGET-20-PARXEC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXEC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXEC-14A-01D	DNA	EFO	SRS634730	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXEC-14A-01D A41573 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41573	SRX590840	"Specific Capture analysis of normal sample TARGET-20-PARXEC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARXEC-14A-01D A41573 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41573_1_lane_dupsFlagged.bam	SRR1379835	@dbgap@:reads/SRP012000/SRS634730/SRX590840/SRR1379835/SRR1379835.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXEC-09A-02D_TARGET-20-PARXEC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXJW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXJW-09A-01D	DNA	EFO	SRS628700	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXJW-09A-01D A32229 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32229	SRX574393	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXJW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARXJW-09A-01D A32229 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32229_1_lane_dupsFlagged.bam	SRR1344866	@dbgap@:reads/SRP012000/SRS628700/SRX574393/SRR1344866/SRR1344866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXJW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXJW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARXJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXJW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXJW-09A-01D	DNA	EFO	SRS628700	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXJW-09A-01D A32229 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32229	SRX574393	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXJW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARXJW-09A-01D A32229 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32229_1_lane_dupsFlagged.bam	SRR1344866	@dbgap@:reads/SRP012000/SRS628700/SRX574393/SRR1344866/SRR1344866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXJW-09A-01D_TARGET-20-PARXJW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXJW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXJW-09A-01D	DNA	EFO	SRS628700	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXJW-09A-01D A32229 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32229	SRX574393	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXJW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARXJW-09A-01D A32229 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32229_1_lane_dupsFlagged.bam	SRR1344866	@dbgap@:reads/SRP012000/SRS628700/SRX574393/SRR1344866/SRR1344866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXJW-09A-01D_TARGET-20-PARXJW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXJW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXJW-14A-01D	DNA	EFO	SRS634692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXJW-14A-01D A41574 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41574	SRX590795	"Specific Capture analysis of normal sample TARGET-20-PARXJW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARXJW-14A-01D A41574 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41574_1_lane_dupsFlagged.bam	SRR1379821	@dbgap@:reads/SRP012000/SRS634692/SRX590795/SRR1379821/SRR1379821.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXJW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXJW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARXJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXJW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXJW-14A-01D	DNA	EFO	SRS634692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXJW-14A-01D A41574 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41574	SRX590795	"Specific Capture analysis of normal sample TARGET-20-PARXJW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARXJW-14A-01D A41574 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41574_1_lane_dupsFlagged.bam	SRR1379821	@dbgap@:reads/SRP012000/SRS634692/SRX590795/SRR1379821/SRR1379821.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXJW-09A-01D_TARGET-20-PARXJW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXJW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXJW-14A-01D	DNA	EFO	SRS634692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXJW-14A-01D A41574 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41574	SRX590795	"Specific Capture analysis of normal sample TARGET-20-PARXJW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARXJW-14A-01D A41574 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41574_1_lane_dupsFlagged.bam	SRR1379821	@dbgap@:reads/SRP012000/SRS634692/SRX590795/SRR1379821/SRR1379821.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXJW-09A-01D_TARGET-20-PARXJW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-01D	DNA	EFO	SRS511710	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXMP-09A-01D A41845 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41845	SRX593307	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXMP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARXMP-09A-01D A41845 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41845_1_lane_dupsFlagged.bam	SRR1385799	@dbgap@:reads/SRP012000/SRS511710/SRX593307/SRR1385799/SRR1385799.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXMP-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXMP-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-01D	DNA	EFO	SRS511710	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXMP-09A-01D A41845 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41845	SRX593307	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXMP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARXMP-09A-01D A41845 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41845_1_lane_dupsFlagged.bam	SRR1385799	@dbgap@:reads/SRP012000/SRS511710/SRX593307/SRR1385799/SRR1385799.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXMP-09A-01D_TARGET-20-PARXMP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-01D	DNA	EFO	SRS511710	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXMP-09A-01D A41845 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41845	SRX593307	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXMP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARXMP-09A-01D A41845 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41845_1_lane_dupsFlagged.bam	SRR1385799	@dbgap@:reads/SRP012000/SRS511710/SRX593307/SRR1385799/SRR1385799.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXMP-09A-01D_TARGET-20-PARXMP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-14A-01D	DNA	EFO	SRS637555	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXMP-14A-01D A42763 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42763	SRX597995	"Specific Capture analysis of normal sample TARGET-20-PARXMP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARXMP-14A-01D A42763 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42763_1_lane_dupsFlagged.bam	SRR1395281	@dbgap@:reads/SRP012000/SRS637555/SRX597995/SRR1395281/SRR1395281.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXMP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXMP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-14A-01D	DNA	EFO	SRS637555	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXMP-14A-01D A42763 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42763	SRX597995	"Specific Capture analysis of normal sample TARGET-20-PARXMP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARXMP-14A-01D A42763 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42763_1_lane_dupsFlagged.bam	SRR1395281	@dbgap@:reads/SRP012000/SRS637555/SRX597995/SRR1395281/SRR1395281.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXMP-09A-01D_TARGET-20-PARXMP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-14A-01D	DNA	EFO	SRS637555	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXMP-14A-01D A42763 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42763	SRX597995	"Specific Capture analysis of normal sample TARGET-20-PARXMP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARXMP-14A-01D A42763 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42763_1_lane_dupsFlagged.bam	SRR1395281	@dbgap@:reads/SRP012000/SRS637555/SRX597995/SRR1395281/SRR1395281.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXMP-09A-01D_TARGET-20-PARXMP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-02D	DNA	EFO	SRS628769	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXNG-09A-02D A32230 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32230	SRX574466	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXNG-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARXNG-09A-02D A32230 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32230_1_lane_dupsFlagged.bam	SRR1344846	@dbgap@:reads/SRP012000/SRS628769/SRX574466/SRR1344846/SRR1344846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXNG-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXNG-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-02D	DNA	EFO	SRS628769	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXNG-09A-02D A32230 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32230	SRX574466	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXNG-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARXNG-09A-02D A32230 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32230_1_lane_dupsFlagged.bam	SRR1344846	@dbgap@:reads/SRP012000/SRS628769/SRX574466/SRR1344846/SRR1344846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXNG-09A-02D_TARGET-20-PARXNG-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-02D	DNA	EFO	SRS628769	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXNG-09A-02D A32230 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32230	SRX574466	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXNG-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARXNG-09A-02D A32230 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32230_1_lane_dupsFlagged.bam	SRR1344846	@dbgap@:reads/SRP012000/SRS628769/SRX574466/SRR1344846/SRR1344846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXNG-09A-02D_TARGET-20-PARXNG-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-14A-03D	DNA	EFO	SRS635873	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXNG-14A-03D A42480 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42480	SRX593830	"Specific Capture analysis of normal sample TARGET-20-PARXNG-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARXNG-14A-03D A42480 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42480_1_lane_dupsFlagged.bam	SRR1386403	@dbgap@:reads/SRP012000/SRS635873/SRX593830/SRR1386403/SRR1386403.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXNG-14A-03D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXNG-14A-03D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-14A-03D	DNA	EFO	SRS635873	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXNG-14A-03D A42480 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42480	SRX593830	"Specific Capture analysis of normal sample TARGET-20-PARXNG-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARXNG-14A-03D A42480 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42480_1_lane_dupsFlagged.bam	SRR1386403	@dbgap@:reads/SRP012000/SRS635873/SRX593830/SRR1386403/SRR1386403.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXNG-09A-02D_TARGET-20-PARXNG-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-14A-03D	DNA	EFO	SRS635873	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXNG-14A-03D A42480 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42480	SRX593830	"Specific Capture analysis of normal sample TARGET-20-PARXNG-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARXNG-14A-03D A42480 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42480_1_lane_dupsFlagged.bam	SRR1386403	@dbgap@:reads/SRP012000/SRS635873/SRX593830/SRR1386403/SRR1386403.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXNG-09A-02D_TARGET-20-PARXNG-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXNP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNP-03A-01D	DNA	EFO	SRS633619	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXNP-03A-01D A33376 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33376	SRX587913	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXNP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARXNP-03A-01D A33376 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33376_1_lane_dupsFlagged.bam	SRR1373820	@dbgap@:reads/SRP012000/SRS633619/SRX587913/SRR1373820/SRR1373820.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXNP-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXNP-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARXNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXNP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNP-03A-01D	DNA	EFO	SRS633619	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXNP-03A-01D A33376 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33376	SRX587913	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXNP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARXNP-03A-01D A33376 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33376_1_lane_dupsFlagged.bam	SRR1373820	@dbgap@:reads/SRP012000/SRS633619/SRX587913/SRR1373820/SRR1373820.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXNP-03A-01D_TARGET-20-PARXNP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXNP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNP-03A-01D	DNA	EFO	SRS633619	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXNP-03A-01D A33376 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33376	SRX587913	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXNP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARXNP-03A-01D A33376 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33376_1_lane_dupsFlagged.bam	SRR1373820	@dbgap@:reads/SRP012000/SRS633619/SRX587913/SRR1373820/SRR1373820.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXNP-03A-01D_TARGET-20-PARXNP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXNP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNP-14A-01D	DNA	EFO	SRS634729	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXNP-14A-01D A41575 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41575	SRX590839	"Specific Capture analysis of normal sample TARGET-20-PARXNP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARXNP-14A-01D A41575 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41575_1_lane_dupsFlagged.bam	SRR1379854	@dbgap@:reads/SRP012000/SRS634729/SRX590839/SRR1379854/SRR1379854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXNP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXNP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARXNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXNP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNP-14A-01D	DNA	EFO	SRS634729	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXNP-14A-01D A41575 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41575	SRX590839	"Specific Capture analysis of normal sample TARGET-20-PARXNP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARXNP-14A-01D A41575 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41575_1_lane_dupsFlagged.bam	SRR1379854	@dbgap@:reads/SRP012000/SRS634729/SRX590839/SRR1379854/SRR1379854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXNP-03A-01D_TARGET-20-PARXNP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXNP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNP-14A-01D	DNA	EFO	SRS634729	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXNP-14A-01D A41575 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41575	SRX590839	"Specific Capture analysis of normal sample TARGET-20-PARXNP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARXNP-14A-01D A41575 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41575_1_lane_dupsFlagged.bam	SRR1379854	@dbgap@:reads/SRP012000/SRS634729/SRX590839/SRR1379854/SRR1379854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXNP-03A-01D_TARGET-20-PARXNP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXVI-09A-02D	DNA	EFO	SRS628766	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXVI-09A-02D A32231 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32231	SRX574463	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXVI-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARXVI-09A-02D A32231 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32231_1_lane_dupsFlagged.bam	SRR1344917	@dbgap@:reads/SRP012000/SRS628766/SRX574463/SRR1344917/SRR1344917.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXVI-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXVI-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARXVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXVI-09A-02D	DNA	EFO	SRS628766	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXVI-09A-02D A32231 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32231	SRX574463	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXVI-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARXVI-09A-02D A32231 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32231_1_lane_dupsFlagged.bam	SRR1344917	@dbgap@:reads/SRP012000/SRS628766/SRX574463/SRR1344917/SRR1344917.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXVI-09A-02D_TARGET-20-PARXVI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXVI-09A-02D	DNA	EFO	SRS628766	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXVI-09A-02D A32231 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32231	SRX574463	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXVI-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARXVI-09A-02D A32231 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32231_1_lane_dupsFlagged.bam	SRR1344917	@dbgap@:reads/SRP012000/SRS628766/SRX574463/SRR1344917/SRR1344917.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXVI-09A-02D_TARGET-20-PARXVI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXVI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXVI-14A-01D	DNA	EFO	SRS635904	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXVI-14A-01D A42484 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42484	SRX593864	"Specific Capture analysis of normal sample TARGET-20-PARXVI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARXVI-14A-01D A42484 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42484_1_lane_dupsFlagged.bam	SRR1386330	@dbgap@:reads/SRP012000/SRS635904/SRX593864/SRR1386330/SRR1386330.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXVI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXVI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARXVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXVI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXVI-14A-01D	DNA	EFO	SRS635904	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXVI-14A-01D A42484 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42484	SRX593864	"Specific Capture analysis of normal sample TARGET-20-PARXVI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARXVI-14A-01D A42484 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42484_1_lane_dupsFlagged.bam	SRR1386330	@dbgap@:reads/SRP012000/SRS635904/SRX593864/SRR1386330/SRR1386330.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXVI-09A-02D_TARGET-20-PARXVI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXVI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXVI-14A-01D	DNA	EFO	SRS635904	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXVI-14A-01D A42484 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42484	SRX593864	"Specific Capture analysis of normal sample TARGET-20-PARXVI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARXVI-14A-01D A42484 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42484_1_lane_dupsFlagged.bam	SRR1386330	@dbgap@:reads/SRP012000/SRS635904/SRX593864/SRR1386330/SRR1386330.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXVI-09A-02D_TARGET-20-PARXVI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXYC-09A-01D	DNA	EFO	SRS635506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXYC-09A-01D A41767 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41767	SRX593228	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXYC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARXYC-09A-01D A41767 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41767_1_lane_dupsFlagged.bam	SRR1385649	@dbgap@:reads/SRP012000/SRS635506/SRX593228/SRR1385649/SRR1385649.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXYC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXYC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARXYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXYC-09A-01D	DNA	EFO	SRS635506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXYC-09A-01D A41767 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41767	SRX593228	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXYC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARXYC-09A-01D A41767 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41767_1_lane_dupsFlagged.bam	SRR1385649	@dbgap@:reads/SRP012000/SRS635506/SRX593228/SRR1385649/SRR1385649.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXYC-09A-01D_TARGET-20-PARXYC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXYC-09A-01D	DNA	EFO	SRS635506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXYC-09A-01D A41767 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41767	SRX593228	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARXYC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARXYC-09A-01D A41767 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41767_1_lane_dupsFlagged.bam	SRR1385649	@dbgap@:reads/SRP012000/SRS635506/SRX593228/SRR1385649/SRR1385649.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXYC-09A-01D_TARGET-20-PARXYC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARXYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXYC-14A-01D	DNA	EFO	SRS637378	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXYC-14A-01D A42803 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42803	SRX597783	"Specific Capture analysis of normal sample TARGET-20-PARXYC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARXYC-14A-01D A42803 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42803_1_lane_dupsFlagged.bam	SRR1395126	@dbgap@:reads/SRP012000/SRS637378/SRX597783/SRR1395126/SRR1395126.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARXYC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARXYC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARXYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXYC-14A-01D	DNA	EFO	SRS637378	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXYC-14A-01D A42803 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42803	SRX597783	"Specific Capture analysis of normal sample TARGET-20-PARXYC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARXYC-14A-01D A42803 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42803_1_lane_dupsFlagged.bam	SRR1395126	@dbgap@:reads/SRP012000/SRS637378/SRX597783/SRR1395126/SRR1395126.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXYC-09A-01D_TARGET-20-PARXYC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARXYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARXYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXYC-14A-01D	DNA	EFO	SRS637378	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXYC-14A-01D A42803 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42803	SRX597783	"Specific Capture analysis of normal sample TARGET-20-PARXYC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARXYC-14A-01D A42803 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42803_1_lane_dupsFlagged.bam	SRR1395126	@dbgap@:reads/SRP012000/SRS637378/SRX597783/SRR1395126/SRR1395126.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARXYC-09A-01D_TARGET-20-PARXYC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYCG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYCG-03A-01D	DNA	EFO	SRS635560	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYCG-03A-01D A41836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41836	SRX593370	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYCG-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARYCG-03A-01D A41836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41836_1_lane_dupsFlagged.bam	SRR1385782	@dbgap@:reads/SRP012000/SRS635560/SRX593370/SRR1385782/SRR1385782.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARYCG-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARYCG-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYCG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYCG-03A-01D	DNA	EFO	SRS635560	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYCG-03A-01D A41836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41836	SRX593370	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYCG-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARYCG-03A-01D A41836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41836_1_lane_dupsFlagged.bam	SRR1385782	@dbgap@:reads/SRP012000/SRS635560/SRX593370/SRR1385782/SRR1385782.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYCG-03A-01D_TARGET-20-PARYCG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYCG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYCG-03A-01D	DNA	EFO	SRS635560	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYCG-03A-01D A41836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41836	SRX593370	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYCG-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PARYCG-03A-01D A41836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41836_1_lane_dupsFlagged.bam	SRR1385782	@dbgap@:reads/SRP012000/SRS635560/SRX593370/SRR1385782/SRR1385782.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYCG-03A-01D_TARGET-20-PARYCG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYCG-14A-01D	DNA	EFO	SRS634719	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYCG-14A-01D A41576 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41576	SRX590827	"Specific Capture analysis of normal sample TARGET-20-PARYCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARYCG-14A-01D A41576 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41576_1_lane_dupsFlagged.bam	SRR1379857	@dbgap@:reads/SRP012000/SRS634719/SRX590827/SRR1379857/SRR1379857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARYCG-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARYCG-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYCG-14A-01D	DNA	EFO	SRS634719	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYCG-14A-01D A41576 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41576	SRX590827	"Specific Capture analysis of normal sample TARGET-20-PARYCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARYCG-14A-01D A41576 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41576_1_lane_dupsFlagged.bam	SRR1379857	@dbgap@:reads/SRP012000/SRS634719/SRX590827/SRR1379857/SRR1379857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYCG-03A-01D_TARGET-20-PARYCG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYCG-14A-01D	DNA	EFO	SRS634719	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYCG-14A-01D A41576 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41576	SRX590827	"Specific Capture analysis of normal sample TARGET-20-PARYCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARYCG-14A-01D A41576 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41576_1_lane_dupsFlagged.bam	SRR1379857	@dbgap@:reads/SRP012000/SRS634719/SRX590827/SRR1379857/SRR1379857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYCG-03A-01D_TARGET-20-PARYCG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-02D	DNA	EFO	SRS628708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYEB-09A-02D A32232 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32232	SRX574401	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYEB-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARYEB-09A-02D A32232 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32232_1_lane_dupsFlagged.bam	SRR1344879	@dbgap@:reads/SRP012000/SRS628708/SRX574401/SRR1344879/SRR1344879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARYEB-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARYEB-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-02D	DNA	EFO	SRS628708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYEB-09A-02D A32232 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32232	SRX574401	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYEB-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARYEB-09A-02D A32232 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32232_1_lane_dupsFlagged.bam	SRR1344879	@dbgap@:reads/SRP012000/SRS628708/SRX574401/SRR1344879/SRR1344879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYEB-09A-02D_TARGET-20-PARYEB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-02D	DNA	EFO	SRS628708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYEB-09A-02D A32232 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32232	SRX574401	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYEB-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARYEB-09A-02D A32232 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32232_1_lane_dupsFlagged.bam	SRR1344879	@dbgap@:reads/SRP012000/SRS628708/SRX574401/SRR1344879/SRR1344879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYEB-09A-02D_TARGET-20-PARYEB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-14A-01D	DNA	EFO	SRS637359	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYEB-14A-01D A42804 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42804	SRX597764	"Specific Capture analysis of normal sample TARGET-20-PARYEB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARYEB-14A-01D A42804 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42804_1_lane_dupsFlagged.bam	SRR1395085	@dbgap@:reads/SRP012000/SRS637359/SRX597764/SRR1395085/SRR1395085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARYEB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARYEB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-14A-01D	DNA	EFO	SRS637359	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYEB-14A-01D A42804 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42804	SRX597764	"Specific Capture analysis of normal sample TARGET-20-PARYEB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARYEB-14A-01D A42804 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42804_1_lane_dupsFlagged.bam	SRR1395085	@dbgap@:reads/SRP012000/SRS637359/SRX597764/SRR1395085/SRR1395085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYEB-09A-02D_TARGET-20-PARYEB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-14A-01D	DNA	EFO	SRS637359	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYEB-14A-01D A42804 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42804	SRX597764	"Specific Capture analysis of normal sample TARGET-20-PARYEB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARYEB-14A-01D A42804 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42804_1_lane_dupsFlagged.bam	SRR1395085	@dbgap@:reads/SRP012000/SRS637359/SRX597764/SRR1395085/SRR1395085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYEB-09A-02D_TARGET-20-PARYEB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-02D	DNA	EFO	SRS628695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-03A-02D A32233 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32233	SRX574388	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYFN-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARYFN-03A-02D A32233 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32233_1_lane_dupsFlagged.bam	SRR1344852	@dbgap@:reads/SRP012000/SRS628695/SRX574388/SRR1344852/SRR1344852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARYFN-03A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARYFN-03A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-02D	DNA	EFO	SRS628695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-03A-02D A32233 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32233	SRX574388	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYFN-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARYFN-03A-02D A32233 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32233_1_lane_dupsFlagged.bam	SRR1344852	@dbgap@:reads/SRP012000/SRS628695/SRX574388/SRR1344852/SRR1344852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYFN-03A-02D_TARGET-20-PARYFN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-02D	DNA	EFO	SRS628695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-03A-02D A32233 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32233	SRX574388	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYFN-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARYFN-03A-02D A32233 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32233_1_lane_dupsFlagged.bam	SRR1344852	@dbgap@:reads/SRP012000/SRS628695/SRX574388/SRR1344852/SRR1344852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYFN-03A-02D_TARGET-20-PARYFN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01D	DNA	EFO	SRS270754	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-04A-01D A42238 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42238	SRX597746	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYFN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARYFN-04A-01D A42238 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42238_1_lane_dupsFlagged.bam	SRR1394981	@dbgap@:reads/SRP012000/SRS270754/SRX597746/SRR1394981/SRR1394981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARYFN-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARYFN-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01D	DNA	EFO	SRS270754	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-04A-01D A42238 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42238	SRX597746	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYFN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARYFN-04A-01D A42238 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42238_1_lane_dupsFlagged.bam	SRR1394981	@dbgap@:reads/SRP012000/SRS270754/SRX597746/SRR1394981/SRR1394981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYFN-04A-01D_TARGET-20-PARYFN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01D	DNA	EFO	SRS270754	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-04A-01D A42238 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42238	SRX597746	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYFN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARYFN-04A-01D A42238 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42238_1_lane_dupsFlagged.bam	SRR1394981	@dbgap@:reads/SRP012000/SRS270754/SRX597746/SRR1394981/SRR1394981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYFN-04A-01D_TARGET-20-PARYFN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-14A-01D A42926 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42926	SRX597881	"Specific Capture analysis of normal sample TARGET-20-PARYFN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARYFN-14A-01D A42926 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42926_1_lane_dupsFlagged.bam	SRR1395186	@dbgap@:reads/SRP012000/SRS270755/SRX597881/SRR1395186/SRR1395186.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARYFN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARYFN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-14A-01D A42926 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42926	SRX597881	"Specific Capture analysis of normal sample TARGET-20-PARYFN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARYFN-14A-01D A42926 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42926_1_lane_dupsFlagged.bam	SRR1395186	@dbgap@:reads/SRP012000/SRS270755/SRX597881/SRR1395186/SRR1395186.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYFN-03A-02D_TARGET-20-PARYFN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-14A-01D A42926 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42926	SRX597881	"Specific Capture analysis of normal sample TARGET-20-PARYFN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARYFN-14A-01D A42926 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42926_1_lane_dupsFlagged.bam	SRR1395186	@dbgap@:reads/SRP012000/SRS270755/SRX597881/SRR1395186/SRR1395186.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYFN-03A-02D_TARGET-20-PARYFN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-14A-01D A42926 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42926	SRX597881	"Specific Capture analysis of normal sample TARGET-20-PARYFN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARYFN-14A-01D A42926 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42926_1_lane_dupsFlagged.bam	SRR1395186	@dbgap@:reads/SRP012000/SRS270755/SRX597881/SRR1395186/SRR1395186.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYFN-04A-01D_TARGET-20-PARYFN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-14A-01D	DNA	EFO	SRS270755	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-14A-01D A42926 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42926	SRX597881	"Specific Capture analysis of normal sample TARGET-20-PARYFN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARYFN-14A-01D A42926 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42926_1_lane_dupsFlagged.bam	SRR1395186	@dbgap@:reads/SRP012000/SRS270755/SRX597881/SRR1395186/SRR1395186.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYFN-04A-01D_TARGET-20-PARYFN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-03A-01D	DNA	EFO	SRS628697	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYGA-03A-01D A32234 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32234	SRX574390	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYGA-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARYGA-03A-01D A32234 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32234_1_lane_dupsFlagged.bam	SRR1344877	@dbgap@:reads/SRP012000/SRS628697/SRX574390/SRR1344877/SRR1344877.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARYGA-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARYGA-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-03A-01D	DNA	EFO	SRS628697	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYGA-03A-01D A32234 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32234	SRX574390	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYGA-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARYGA-03A-01D A32234 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32234_1_lane_dupsFlagged.bam	SRR1344877	@dbgap@:reads/SRP012000/SRS628697/SRX574390/SRR1344877/SRR1344877.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYGA-03A-01D_TARGET-20-PARYGA-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-03A-01D	DNA	EFO	SRS628697	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYGA-03A-01D A32234 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32234	SRX574390	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYGA-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARYGA-03A-01D A32234 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32234_1_lane_dupsFlagged.bam	SRR1344877	@dbgap@:reads/SRP012000/SRS628697/SRX574390/SRR1344877/SRR1344877.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYGA-03A-01D_TARGET-20-PARYGA-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-14A-03D	DNA	EFO	SRS635883	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYGA-14A-03D A42483 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42483	SRX593843	"Specific Capture analysis of normal sample TARGET-20-PARYGA-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARYGA-14A-03D A42483 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42483_1_lane_dupsFlagged.bam	SRR1386325	@dbgap@:reads/SRP012000/SRS635883/SRX593843/SRR1386325/SRR1386325.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARYGA-14A-03D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARYGA-14A-03D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-14A-03D	DNA	EFO	SRS635883	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYGA-14A-03D A42483 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42483	SRX593843	"Specific Capture analysis of normal sample TARGET-20-PARYGA-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARYGA-14A-03D A42483 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42483_1_lane_dupsFlagged.bam	SRR1386325	@dbgap@:reads/SRP012000/SRS635883/SRX593843/SRR1386325/SRR1386325.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYGA-03A-01D_TARGET-20-PARYGA-14A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-14A-03D	DNA	EFO	SRS635883	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYGA-14A-03D A42483 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42483	SRX593843	"Specific Capture analysis of normal sample TARGET-20-PARYGA-14A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARYGA-14A-03D A42483 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42483_1_lane_dupsFlagged.bam	SRR1386325	@dbgap@:reads/SRP012000/SRS635883/SRX593843/SRR1386325/SRR1386325.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYGA-03A-01D_TARGET-20-PARYGA-14A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYHL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARYHL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYHL-09A-01D	DNA	EFO	SRS635596	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYHL-09A-01D A41921 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41921	SRX593415	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYHL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PARYHL-09A-01D A41921 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41921_1_lane_dupsFlagged.bam	SRR1385890	@dbgap@:reads/SRP012000/SRS635596/SRX593415/SRR1385890/SRR1385890.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARYHL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARYHL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARYHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARYHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYHR-09A-01D	DNA	EFO	SRS629132	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYHR-09A-01D A33354 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33354	SRX575188	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYHR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARYHR-09A-01D A33354 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33354_1_lane_dupsFlagged.bam	SRR1346416	@dbgap@:reads/SRP012000/SRS629132/SRX575188/SRR1346416/SRR1346416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARYHR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARYHR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARYHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARYHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYHR-09A-01D	DNA	EFO	SRS629132	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYHR-09A-01D A33354 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33354	SRX575188	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYHR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARYHR-09A-01D A33354 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33354_1_lane_dupsFlagged.bam	SRR1346416	@dbgap@:reads/SRP012000/SRS629132/SRX575188/SRR1346416/SRR1346416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYHR-09A-01D_TARGET-20-PARYHR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARYHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYHR-09A-01D	DNA	EFO	SRS629132	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYHR-09A-01D A33354 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33354	SRX575188	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYHR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARYHR-09A-01D A33354 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33354_1_lane_dupsFlagged.bam	SRR1346416	@dbgap@:reads/SRP012000/SRS629132/SRX575188/SRR1346416/SRR1346416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYHR-09A-01D_TARGET-20-PARYHR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARYHR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYHR-14A-01D	DNA	EFO	SRS634690	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYHR-14A-01D A41577 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41577	SRX590792	"Specific Capture analysis of normal sample TARGET-20-PARYHR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARYHR-14A-01D A41577 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41577_1_lane_dupsFlagged.bam	SRR1379885	@dbgap@:reads/SRP012000/SRS634690/SRX590792/SRR1379885/SRR1379885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARYHR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARYHR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARYHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARYHR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYHR-14A-01D	DNA	EFO	SRS634690	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYHR-14A-01D A41577 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41577	SRX590792	"Specific Capture analysis of normal sample TARGET-20-PARYHR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARYHR-14A-01D A41577 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41577_1_lane_dupsFlagged.bam	SRR1379885	@dbgap@:reads/SRP012000/SRS634690/SRX590792/SRR1379885/SRR1379885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYHR-09A-01D_TARGET-20-PARYHR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARYHR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYHR-14A-01D	DNA	EFO	SRS634690	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYHR-14A-01D A41577 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41577	SRX590792	"Specific Capture analysis of normal sample TARGET-20-PARYHR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARYHR-14A-01D A41577 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41577_1_lane_dupsFlagged.bam	SRR1379885	@dbgap@:reads/SRP012000/SRS634690/SRX590792/SRR1379885/SRR1379885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYHR-09A-01D_TARGET-20-PARYHR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARYTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYTI-09A-01D	DNA	EFO	SRS633682	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYTI-09A-01D A33407 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33407	SRX587976	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYTI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARYTI-09A-01D A33407 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33407_1_lane_dupsFlagged.bam	SRR1373811	@dbgap@:reads/SRP012000/SRS633682/SRX587976/SRR1373811/SRR1373811.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARYTI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARYTI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARYTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARYTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYTI-09A-01D	DNA	EFO	SRS633682	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYTI-09A-01D A33407 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33407	SRX587976	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYTI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARYTI-09A-01D A33407 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33407_1_lane_dupsFlagged.bam	SRR1373811	@dbgap@:reads/SRP012000/SRS633682/SRX587976/SRR1373811/SRR1373811.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYTI-09A-01D_TARGET-20-PARYTI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARYTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYTI-09A-01D	DNA	EFO	SRS633682	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYTI-09A-01D A33407 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33407	SRX587976	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYTI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PARYTI-09A-01D A33407 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33407_1_lane_dupsFlagged.bam	SRR1373811	@dbgap@:reads/SRP012000/SRS633682/SRX587976/SRR1373811/SRR1373811.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYTI-09A-01D_TARGET-20-PARYTI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARYTI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYTI-14A-01D	DNA	EFO	SRS635966	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYTI-14A-01D A42571 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42571	SRX593929	"Specific Capture analysis of normal sample TARGET-20-PARYTI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARYTI-14A-01D A42571 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42571_1_lane_dupsFlagged.bam	SRR1386496	@dbgap@:reads/SRP012000/SRS635966/SRX593929/SRR1386496/SRR1386496.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARYTI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARYTI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARYTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARYTI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYTI-14A-01D	DNA	EFO	SRS635966	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYTI-14A-01D A42571 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42571	SRX593929	"Specific Capture analysis of normal sample TARGET-20-PARYTI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARYTI-14A-01D A42571 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42571_1_lane_dupsFlagged.bam	SRR1386496	@dbgap@:reads/SRP012000/SRS635966/SRX593929/SRR1386496/SRR1386496.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYTI-09A-01D_TARGET-20-PARYTI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARYTI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYTI-14A-01D	DNA	EFO	SRS635966	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYTI-14A-01D A42571 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42571	SRX593929	"Specific Capture analysis of normal sample TARGET-20-PARYTI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARYTI-14A-01D A42571 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42571_1_lane_dupsFlagged.bam	SRR1386496	@dbgap@:reads/SRP012000/SRS635966/SRX593929/SRR1386496/SRR1386496.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYTI-09A-01D_TARGET-20-PARYTI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02D	DNA	EFO	SRS301114	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-04A-02D A42280 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42280	SRX597732	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYVW-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARYVW-04A-02D A42280 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42280_1_lane_dupsFlagged.bam	SRR1395033	@dbgap@:reads/SRP012000/SRS301114/SRX597732/SRR1395033/SRR1395033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARYVW-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARYVW-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02D	DNA	EFO	SRS301114	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-04A-02D A42280 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42280	SRX597732	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYVW-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARYVW-04A-02D A42280 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42280_1_lane_dupsFlagged.bam	SRR1395033	@dbgap@:reads/SRP012000/SRS301114/SRX597732/SRR1395033/SRR1395033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYVW-04A-02D_TARGET-20-PARYVW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02D	DNA	EFO	SRS301114	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-04A-02D A42280 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42280	SRX597732	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYVW-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PARYVW-04A-02D A42280 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42280_1_lane_dupsFlagged.bam	SRR1395033	@dbgap@:reads/SRP012000/SRS301114/SRX597732/SRR1395033/SRR1395033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYVW-04A-02D_TARGET-20-PARYVW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01D	DNA	EFO	SRS301115	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-09A-01D A31226 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31226	SRX573345	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYVW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARYVW-09A-01D A31226 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31226_1_lane_dupsFlagged.bam	SRR1342686	@dbgap@:reads/SRP012000/SRS301115/SRX573345/SRR1342686/SRR1342686.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARYVW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARYVW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01D	DNA	EFO	SRS301115	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-09A-01D A31226 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31226	SRX573345	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYVW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARYVW-09A-01D A31226 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31226_1_lane_dupsFlagged.bam	SRR1342686	@dbgap@:reads/SRP012000/SRS301115/SRX573345/SRR1342686/SRR1342686.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYVW-09A-01D_TARGET-20-PARYVW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01D	DNA	EFO	SRS301115	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-09A-01D A31226 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31226	SRX573345	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYVW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARYVW-09A-01D A31226 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31226_1_lane_dupsFlagged.bam	SRR1342686	@dbgap@:reads/SRP012000/SRS301115/SRX573345/SRR1342686/SRR1342686.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYVW-09A-01D_TARGET-20-PARYVW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-14A-01D A42948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42948	SRX597897	"Specific Capture analysis of normal sample TARGET-20-PARYVW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARYVW-14A-01D A42948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42948_1_lane_dupsFlagged.bam	SRR1395155	@dbgap@:reads/SRP012000/SRS301116/SRX597897/SRR1395155/SRR1395155.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARYVW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARYVW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-14A-01D A42948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42948	SRX597897	"Specific Capture analysis of normal sample TARGET-20-PARYVW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARYVW-14A-01D A42948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42948_1_lane_dupsFlagged.bam	SRR1395155	@dbgap@:reads/SRP012000/SRS301116/SRX597897/SRR1395155/SRR1395155.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYVW-04A-02D_TARGET-20-PARYVW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-14A-01D A42948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42948	SRX597897	"Specific Capture analysis of normal sample TARGET-20-PARYVW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARYVW-14A-01D A42948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42948_1_lane_dupsFlagged.bam	SRR1395155	@dbgap@:reads/SRP012000/SRS301116/SRX597897/SRR1395155/SRR1395155.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYVW-04A-02D_TARGET-20-PARYVW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-14A-01D A42948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42948	SRX597897	"Specific Capture analysis of normal sample TARGET-20-PARYVW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARYVW-14A-01D A42948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42948_1_lane_dupsFlagged.bam	SRR1395155	@dbgap@:reads/SRP012000/SRS301116/SRX597897/SRR1395155/SRR1395155.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYVW-09A-01D_TARGET-20-PARYVW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-14A-01D	DNA	EFO	SRS301116	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-14A-01D A42948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42948	SRX597897	"Specific Capture analysis of normal sample TARGET-20-PARYVW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARYVW-14A-01D A42948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42948_1_lane_dupsFlagged.bam	SRR1395155	@dbgap@:reads/SRP012000/SRS301116/SRX597897/SRR1395155/SRR1395155.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYVW-09A-01D_TARGET-20-PARYVW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYXV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYXV-09A-01D	DNA	EFO	SRS628334	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYXV-09A-01D A31253 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31253	SRX573412	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYXV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARYXV-09A-01D A31253 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31253_1_lane_dupsFlagged.bam	SRR1342607	@dbgap@:reads/SRP012000/SRS628334/SRX573412/SRR1342607/SRR1342607.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARYXV-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARYXV-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARYXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYXV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYXV-09A-01D	DNA	EFO	SRS628334	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYXV-09A-01D A31253 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31253	SRX573412	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYXV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARYXV-09A-01D A31253 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31253_1_lane_dupsFlagged.bam	SRR1342607	@dbgap@:reads/SRP012000/SRS628334/SRX573412/SRR1342607/SRR1342607.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYXV-09A-01D_TARGET-20-PARYXV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYXV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYXV-09A-01D	DNA	EFO	SRS628334	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYXV-09A-01D A31253 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31253	SRX573412	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARYXV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARYXV-09A-01D A31253 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31253_1_lane_dupsFlagged.bam	SRR1342607	@dbgap@:reads/SRP012000/SRS628334/SRX573412/SRR1342607/SRR1342607.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYXV-09A-01D_TARGET-20-PARYXV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARYXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYXV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYXV-14A-01D	DNA	EFO	SRS637356	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYXV-14A-01D A42805 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42805	SRX597761	"Specific Capture analysis of normal sample TARGET-20-PARYXV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARYXV-14A-01D A42805 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42805_1_lane_dupsFlagged.bam	SRR1395063	@dbgap@:reads/SRP012000/SRS637356/SRX597761/SRR1395063/SRR1395063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARYXV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARYXV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARYXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYXV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYXV-14A-01D	DNA	EFO	SRS637356	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYXV-14A-01D A42805 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42805	SRX597761	"Specific Capture analysis of normal sample TARGET-20-PARYXV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARYXV-14A-01D A42805 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42805_1_lane_dupsFlagged.bam	SRR1395063	@dbgap@:reads/SRP012000/SRS637356/SRX597761/SRR1395063/SRR1395063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYXV-09A-01D_TARGET-20-PARYXV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARYXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYXV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYXV-14A-01D	DNA	EFO	SRS637356	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYXV-14A-01D A42805 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42805	SRX597761	"Specific Capture analysis of normal sample TARGET-20-PARYXV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARYXV-14A-01D A42805 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42805_1_lane_dupsFlagged.bam	SRR1395063	@dbgap@:reads/SRP012000/SRS637356/SRX597761/SRR1395063/SRR1395063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARYXV-09A-01D_TARGET-20-PARYXV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZGM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZGM-09A-01D	DNA	EFO	SRS635451	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZGM-09A-01D A41768 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41768	SRX593173	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZGM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZGM-09A-01D A41768 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41768_1_lane_dupsFlagged.bam	SRR1385622	@dbgap@:reads/SRP012000/SRS635451/SRX593173/SRR1385622/SRR1385622.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZGM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZGM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARZHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZHI-09A-01D	DNA	EFO	SRS633690	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZHI-09A-01D A33408 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33408	SRX587984	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZHI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARZHI-09A-01D A33408 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33408_1_lane_dupsFlagged.bam	SRR1373824	@dbgap@:reads/SRP012000/SRS633690/SRX587984/SRR1373824/SRR1373824.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZHI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZHI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARZHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZHI-09A-01D	DNA	EFO	SRS633690	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZHI-09A-01D A33408 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33408	SRX587984	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZHI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARZHI-09A-01D A33408 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33408_1_lane_dupsFlagged.bam	SRR1373824	@dbgap@:reads/SRP012000/SRS633690/SRX587984/SRR1373824/SRR1373824.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZHI-09A-01D_TARGET-20-PARZHI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZHI-09A-01D	DNA	EFO	SRS633690	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZHI-09A-01D A33408 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33408	SRX587984	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZHI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARZHI-09A-01D A33408 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33408_1_lane_dupsFlagged.bam	SRR1373824	@dbgap@:reads/SRP012000/SRS633690/SRX587984/SRR1373824/SRR1373824.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZHI-09A-01D_TARGET-20-PARZHI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZHI-14A-01D	DNA	EFO	SRS634735	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZHI-14A-01D A41581 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41581	SRX590848	"Specific Capture analysis of normal sample TARGET-20-PARZHI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZHI-14A-01D A41581 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41581_1_lane_dupsFlagged.bam	SRR1379839	@dbgap@:reads/SRP012000/SRS634735/SRX590848/SRR1379839/SRR1379839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZHI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZHI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARZHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZHI-14A-01D	DNA	EFO	SRS634735	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZHI-14A-01D A41581 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41581	SRX590848	"Specific Capture analysis of normal sample TARGET-20-PARZHI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZHI-14A-01D A41581 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41581_1_lane_dupsFlagged.bam	SRR1379839	@dbgap@:reads/SRP012000/SRS634735/SRX590848/SRR1379839/SRR1379839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZHI-09A-01D_TARGET-20-PARZHI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZHI-14A-01D	DNA	EFO	SRS634735	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZHI-14A-01D A41581 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41581	SRX590848	"Specific Capture analysis of normal sample TARGET-20-PARZHI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZHI-14A-01D A41581 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41581_1_lane_dupsFlagged.bam	SRR1379839	@dbgap@:reads/SRP012000/SRS634735/SRX590848/SRR1379839/SRR1379839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZHI-09A-01D_TARGET-20-PARZHI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZHT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZHT-09A-01D	DNA	EFO	SRS635435	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZHT-09A-01D A41769 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41769	SRX593157	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZHT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZHT-09A-01D A41769 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41769_1_lane_dupsFlagged.bam	SRR1385635	@dbgap@:reads/SRP012000/SRS635435/SRX593157/SRR1385635/SRR1385635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZHT-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZHT-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARZHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZHT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZHT-09A-01D	DNA	EFO	SRS635435	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZHT-09A-01D A41769 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41769	SRX593157	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZHT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZHT-09A-01D A41769 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41769_1_lane_dupsFlagged.bam	SRR1385635	@dbgap@:reads/SRP012000/SRS635435/SRX593157/SRR1385635/SRR1385635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZHT-09A-01D_TARGET-20-PARZHT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZHT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZHT-09A-01D	DNA	EFO	SRS635435	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZHT-09A-01D A41769 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41769	SRX593157	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZHT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZHT-09A-01D A41769 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41769_1_lane_dupsFlagged.bam	SRR1385635	@dbgap@:reads/SRP012000/SRS635435/SRX593157/SRR1385635/SRR1385635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZHT-09A-01D_TARGET-20-PARZHT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZHT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZHT-14A-01D	DNA	EFO	SRS635945	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZHT-14A-01D A42482 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42482	SRX593906	"Specific Capture analysis of normal sample TARGET-20-PARZHT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARZHT-14A-01D A42482 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42482_1_lane_dupsFlagged.bam	SRR1386352	@dbgap@:reads/SRP012000/SRS635945/SRX593906/SRR1386352/SRR1386352.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZHT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZHT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARZHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZHT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZHT-14A-01D	DNA	EFO	SRS635945	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZHT-14A-01D A42482 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42482	SRX593906	"Specific Capture analysis of normal sample TARGET-20-PARZHT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARZHT-14A-01D A42482 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42482_1_lane_dupsFlagged.bam	SRR1386352	@dbgap@:reads/SRP012000/SRS635945/SRX593906/SRR1386352/SRR1386352.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZHT-09A-01D_TARGET-20-PARZHT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZHT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZHT-14A-01D	DNA	EFO	SRS635945	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZHT-14A-01D A42482 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42482	SRX593906	"Specific Capture analysis of normal sample TARGET-20-PARZHT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARZHT-14A-01D A42482 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42482_1_lane_dupsFlagged.bam	SRR1386352	@dbgap@:reads/SRP012000/SRS635945/SRX593906/SRR1386352/SRR1386352.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZHT-09A-01D_TARGET-20-PARZHT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZIA-09A-01D	DNA	EFO	SRS628307	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZIA-09A-01D A31227 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31227	SRX573373	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZIA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARZIA-09A-01D A31227 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31227_1_lane_dupsFlagged.bam	SRR1342696	@dbgap@:reads/SRP012000/SRS628307/SRX573373/SRR1342696/SRR1342696.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZIA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZIA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZIA-09A-01D	DNA	EFO	SRS628307	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZIA-09A-01D A31227 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31227	SRX573373	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZIA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARZIA-09A-01D A31227 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31227_1_lane_dupsFlagged.bam	SRR1342696	@dbgap@:reads/SRP012000/SRS628307/SRX573373/SRR1342696/SRR1342696.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZIA-09A-01D_TARGET-20-PARZIA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZIA-09A-01D	DNA	EFO	SRS628307	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZIA-09A-01D A31227 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31227	SRX573373	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZIA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PARZIA-09A-01D A31227 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31227_1_lane_dupsFlagged.bam	SRR1342696	@dbgap@:reads/SRP012000/SRS628307/SRX573373/SRR1342696/SRR1342696.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZIA-09A-01D_TARGET-20-PARZIA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZIA-14A-01D	DNA	EFO	SRS634739	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZIA-14A-01D A41579 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41579	SRX590854	"Specific Capture analysis of normal sample TARGET-20-PARZIA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZIA-14A-01D A41579 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41579_1_lane_dupsFlagged.bam	SRR1379845	@dbgap@:reads/SRP012000/SRS634739/SRX590854/SRR1379845/SRR1379845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZIA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZIA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZIA-14A-01D	DNA	EFO	SRS634739	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZIA-14A-01D A41579 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41579	SRX590854	"Specific Capture analysis of normal sample TARGET-20-PARZIA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZIA-14A-01D A41579 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41579_1_lane_dupsFlagged.bam	SRR1379845	@dbgap@:reads/SRP012000/SRS634739/SRX590854/SRR1379845/SRR1379845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZIA-09A-01D_TARGET-20-PARZIA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZIA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZIA-14A-01D	DNA	EFO	SRS634739	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZIA-14A-01D A41579 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41579	SRX590854	"Specific Capture analysis of normal sample TARGET-20-PARZIA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZIA-14A-01D A41579 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41579_1_lane_dupsFlagged.bam	SRR1379845	@dbgap@:reads/SRP012000/SRS634739/SRX590854/SRR1379845/SRR1379845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZIA-09A-01D_TARGET-20-PARZIA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZMZ-03A-01D	DNA	EFO	SRS628731	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZMZ-03A-01D A32235 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32235	SRX574426	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZMZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARZMZ-03A-01D A32235 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32235_1_lane_dupsFlagged.bam	SRR1344868	@dbgap@:reads/SRP012000/SRS628731/SRX574426/SRR1344868/SRR1344868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZMZ-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZMZ-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARZMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZMZ-03A-01D	DNA	EFO	SRS628731	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZMZ-03A-01D A32235 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32235	SRX574426	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZMZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARZMZ-03A-01D A32235 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32235_1_lane_dupsFlagged.bam	SRR1344868	@dbgap@:reads/SRP012000/SRS628731/SRX574426/SRR1344868/SRR1344868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZMZ-03A-01D_TARGET-20-PARZMZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZMZ-03A-01D	DNA	EFO	SRS628731	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZMZ-03A-01D A32235 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32235	SRX574426	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZMZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARZMZ-03A-01D A32235 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32235_1_lane_dupsFlagged.bam	SRR1344868	@dbgap@:reads/SRP012000/SRS628731/SRX574426/SRR1344868/SRR1344868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZMZ-03A-01D_TARGET-20-PARZMZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZMZ-14A-01D	DNA	EFO	SRS634697	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZMZ-14A-01D A41578 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41578	SRX590798	"Specific Capture analysis of normal sample TARGET-20-PARZMZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZMZ-14A-01D A41578 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41578_1_lane_dupsFlagged.bam	SRR1379878	@dbgap@:reads/SRP012000/SRS634697/SRX590798/SRR1379878/SRR1379878.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZMZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZMZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARZMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZMZ-14A-01D	DNA	EFO	SRS634697	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZMZ-14A-01D A41578 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41578	SRX590798	"Specific Capture analysis of normal sample TARGET-20-PARZMZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZMZ-14A-01D A41578 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41578_1_lane_dupsFlagged.bam	SRR1379878	@dbgap@:reads/SRP012000/SRS634697/SRX590798/SRR1379878/SRR1379878.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZMZ-03A-01D_TARGET-20-PARZMZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZMZ-14A-01D	DNA	EFO	SRS634697	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZMZ-14A-01D A41578 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41578	SRX590798	"Specific Capture analysis of normal sample TARGET-20-PARZMZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZMZ-14A-01D A41578 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41578_1_lane_dupsFlagged.bam	SRR1379878	@dbgap@:reads/SRP012000/SRS634697/SRX590798/SRR1379878/SRR1379878.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZMZ-03A-01D_TARGET-20-PARZMZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZPD-09A-01D	DNA	EFO	SRS628910	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZPD-09A-01D A32330 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32330	SRX574966	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZPD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARZPD-09A-01D A32330 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32330_1_lane_dupsFlagged.bam	SRR1346210	@dbgap@:reads/SRP012000/SRS628910/SRX574966/SRR1346210/SRR1346210.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZPD-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZPD-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARZPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZPD-09A-01D	DNA	EFO	SRS628910	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZPD-09A-01D A32330 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32330	SRX574966	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZPD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARZPD-09A-01D A32330 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32330_1_lane_dupsFlagged.bam	SRR1346210	@dbgap@:reads/SRP012000/SRS628910/SRX574966/SRR1346210/SRR1346210.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZPD-09A-01D_TARGET-20-PARZPD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZPD-09A-01D	DNA	EFO	SRS628910	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZPD-09A-01D A32330 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32330	SRX574966	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZPD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARZPD-09A-01D A32330 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32330_1_lane_dupsFlagged.bam	SRR1346210	@dbgap@:reads/SRP012000/SRS628910/SRX574966/SRR1346210/SRR1346210.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZPD-09A-01D_TARGET-20-PARZPD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZPD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZPD-10A-01D	DNA	EFO	SRS634687	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZPD-10A-01D A41583 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41583	SRX590785	"Specific Capture analysis of normal sample TARGET-20-PARZPD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZPD-10A-01D A41583 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41583_1_lane_dupsFlagged.bam	SRR1379803	@dbgap@:reads/SRP012000/SRS634687/SRX590785/SRR1379803/SRR1379803.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZPD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZPD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARZPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZPD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZPD-10A-01D	DNA	EFO	SRS634687	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZPD-10A-01D A41583 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41583	SRX590785	"Specific Capture analysis of normal sample TARGET-20-PARZPD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZPD-10A-01D A41583 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41583_1_lane_dupsFlagged.bam	SRR1379803	@dbgap@:reads/SRP012000/SRS634687/SRX590785/SRR1379803/SRR1379803.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZPD-09A-01D_TARGET-20-PARZPD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZPD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZPD-10A-01D	DNA	EFO	SRS634687	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZPD-10A-01D A41583 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41583	SRX590785	"Specific Capture analysis of normal sample TARGET-20-PARZPD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZPD-10A-01D A41583 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41583_1_lane_dupsFlagged.bam	SRR1379803	@dbgap@:reads/SRP012000/SRS634687/SRX590785/SRR1379803/SRR1379803.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZPD-09A-01D_TARGET-20-PARZPD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-04A-01D	DNA	EFO	SRS637528	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZUU-04A-01D A42744 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42744	SRX597966	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZUU-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARZUU-04A-01D A42744 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42744_1_lane_dupsFlagged.bam	SRR1395265	@dbgap@:reads/SRP012000/SRS637528/SRX597966/SRR1395265/SRR1395265.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZUU-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZUU-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-04A-01D	DNA	EFO	SRS637528	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZUU-04A-01D A42744 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42744	SRX597966	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZUU-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARZUU-04A-01D A42744 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42744_1_lane_dupsFlagged.bam	SRR1395265	@dbgap@:reads/SRP012000/SRS637528/SRX597966/SRR1395265/SRR1395265.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZUU-04A-01D_TARGET-20-PARZUU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-04A-01D	DNA	EFO	SRS637528	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZUU-04A-01D A42744 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42744	SRX597966	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZUU-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARZUU-04A-01D A42744 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42744_1_lane_dupsFlagged.bam	SRR1395265	@dbgap@:reads/SRP012000/SRS637528/SRX597966/SRR1395265/SRR1395265.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZUU-04A-01D_TARGET-20-PARZUU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-02D	DNA	EFO	SRS628736	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZUU-09A-02D A32236 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32236	SRX574431	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZUU-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARZUU-09A-02D A32236 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32236_1_lane_dupsFlagged.bam	SRR1344842	@dbgap@:reads/SRP012000/SRS628736/SRX574431/SRR1344842/SRR1344842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZUU-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZUU-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-02D	DNA	EFO	SRS628736	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZUU-09A-02D A32236 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32236	SRX574431	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZUU-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARZUU-09A-02D A32236 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32236_1_lane_dupsFlagged.bam	SRR1344842	@dbgap@:reads/SRP012000/SRS628736/SRX574431/SRR1344842/SRR1344842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZUU-09A-02D_TARGET-20-PARZUU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-02D	DNA	EFO	SRS628736	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZUU-09A-02D A32236 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32236	SRX574431	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZUU-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARZUU-09A-02D A32236 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32236_1_lane_dupsFlagged.bam	SRR1344842	@dbgap@:reads/SRP012000/SRS628736/SRX574431/SRR1344842/SRR1344842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZUU-09A-02D_TARGET-20-PARZUU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZUU-14A-01D A42764 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42764	SRX597946	"Specific Capture analysis of normal sample TARGET-20-PARZUU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARZUU-14A-01D A42764 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42764_1_lane_dupsFlagged.bam	SRR1395262	@dbgap@:reads/SRP012000/SRS118052/SRX597946/SRR1395262/SRR1395262.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZUU-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZUU-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZUU-14A-01D A42764 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42764	SRX597946	"Specific Capture analysis of normal sample TARGET-20-PARZUU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARZUU-14A-01D A42764 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42764_1_lane_dupsFlagged.bam	SRR1395262	@dbgap@:reads/SRP012000/SRS118052/SRX597946/SRR1395262/SRR1395262.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZUU-04A-01D_TARGET-20-PARZUU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZUU-14A-01D A42764 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42764	SRX597946	"Specific Capture analysis of normal sample TARGET-20-PARZUU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARZUU-14A-01D A42764 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42764_1_lane_dupsFlagged.bam	SRR1395262	@dbgap@:reads/SRP012000/SRS118052/SRX597946/SRR1395262/SRR1395262.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZUU-04A-01D_TARGET-20-PARZUU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZUU-14A-01D A42764 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42764	SRX597946	"Specific Capture analysis of normal sample TARGET-20-PARZUU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARZUU-14A-01D A42764 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42764_1_lane_dupsFlagged.bam	SRR1395262	@dbgap@:reads/SRP012000/SRS118052/SRX597946/SRR1395262/SRR1395262.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZUU-09A-02D_TARGET-20-PARZUU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-14A-01D	DNA	EFO	SRS118052	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZUU-14A-01D A42764 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42764	SRX597946	"Specific Capture analysis of normal sample TARGET-20-PARZUU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PARZUU-14A-01D A42764 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42764_1_lane_dupsFlagged.bam	SRR1395262	@dbgap@:reads/SRP012000/SRS118052/SRX597946/SRR1395262/SRR1395262.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZUU-09A-02D_TARGET-20-PARZUU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZVA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZVA-09A-01D	DNA	EFO	SRS628704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZVA-09A-01D A32237 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32237	SRX574397	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZVA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARZVA-09A-01D A32237 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32237_1_lane_dupsFlagged.bam	SRR1344913	@dbgap@:reads/SRP012000/SRS628704/SRX574397/SRR1344913/SRR1344913.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZVA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZVA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARZVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZVA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZVA-09A-01D	DNA	EFO	SRS628704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZVA-09A-01D A32237 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32237	SRX574397	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZVA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARZVA-09A-01D A32237 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32237_1_lane_dupsFlagged.bam	SRR1344913	@dbgap@:reads/SRP012000/SRS628704/SRX574397/SRR1344913/SRR1344913.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZVA-09A-01D_TARGET-20-PARZVA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZVA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZVA-09A-01D	DNA	EFO	SRS628704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZVA-09A-01D A32237 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32237	SRX574397	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZVA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PARZVA-09A-01D A32237 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32237_1_lane_dupsFlagged.bam	SRR1344913	@dbgap@:reads/SRP012000/SRS628704/SRX574397/SRR1344913/SRR1344913.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZVA-09A-01D_TARGET-20-PARZVA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZVA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZVA-14A-01D	DNA	EFO	SRS634737	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZVA-14A-01D A41584 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41584	SRX590851	"Specific Capture analysis of normal sample TARGET-20-PARZVA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZVA-14A-01D A41584 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41584_1_lane_dupsFlagged.bam	SRR1379851	@dbgap@:reads/SRP012000/SRS634737/SRX590851/SRR1379851/SRR1379851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZVA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZVA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARZVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZVA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZVA-14A-01D	DNA	EFO	SRS634737	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZVA-14A-01D A41584 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41584	SRX590851	"Specific Capture analysis of normal sample TARGET-20-PARZVA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZVA-14A-01D A41584 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41584_1_lane_dupsFlagged.bam	SRR1379851	@dbgap@:reads/SRP012000/SRS634737/SRX590851/SRR1379851/SRR1379851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZVA-09A-01D_TARGET-20-PARZVA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZVA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZVA-14A-01D	DNA	EFO	SRS634737	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZVA-14A-01D A41584 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41584	SRX590851	"Specific Capture analysis of normal sample TARGET-20-PARZVA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZVA-14A-01D A41584 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41584_1_lane_dupsFlagged.bam	SRR1379851	@dbgap@:reads/SRP012000/SRS634737/SRX590851/SRR1379851/SRR1379851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZVA-09A-01D_TARGET-20-PARZVA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZVE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZVE-03A-01D	DNA	EFO	SRS635446	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZVE-03A-01D A41740 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41740	SRX593168	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZVE-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZVE-03A-01D A41740 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41740_1_lane_dupsFlagged.bam	SRR1385655	@dbgap@:reads/SRP012000/SRS635446/SRX593168/SRR1385655/SRR1385655.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZVE-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZVE-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARZVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZVE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZVE-03A-01D	DNA	EFO	SRS635446	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZVE-03A-01D A41740 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41740	SRX593168	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZVE-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZVE-03A-01D A41740 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41740_1_lane_dupsFlagged.bam	SRR1385655	@dbgap@:reads/SRP012000/SRS635446/SRX593168/SRR1385655/SRR1385655.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZVE-03A-01D_TARGET-20-PARZVE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZVE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZVE-03A-01D	DNA	EFO	SRS635446	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZVE-03A-01D A41740 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41740	SRX593168	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZVE-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZVE-03A-01D A41740 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41740_1_lane_dupsFlagged.bam	SRR1385655	@dbgap@:reads/SRP012000/SRS635446/SRX593168/SRR1385655/SRR1385655.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZVE-03A-01D_TARGET-20-PARZVE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZVE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZVE-14A-01D	DNA	EFO	SRS634701	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZVE-14A-01D A41582 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41582	SRX590804	"Specific Capture analysis of normal sample TARGET-20-PARZVE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZVE-14A-01D A41582 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41582_1_lane_dupsFlagged.bam	SRR1379856	@dbgap@:reads/SRP012000/SRS634701/SRX590804/SRR1379856/SRR1379856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZVE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZVE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARZVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZVE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZVE-14A-01D	DNA	EFO	SRS634701	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZVE-14A-01D A41582 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41582	SRX590804	"Specific Capture analysis of normal sample TARGET-20-PARZVE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZVE-14A-01D A41582 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41582_1_lane_dupsFlagged.bam	SRR1379856	@dbgap@:reads/SRP012000/SRS634701/SRX590804/SRR1379856/SRR1379856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZVE-03A-01D_TARGET-20-PARZVE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZVE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZVE-14A-01D	DNA	EFO	SRS634701	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZVE-14A-01D A41582 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41582	SRX590804	"Specific Capture analysis of normal sample TARGET-20-PARZVE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZVE-14A-01D A41582 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41582_1_lane_dupsFlagged.bam	SRR1379856	@dbgap@:reads/SRP012000/SRS634701/SRX590804/SRR1379856/SRR1379856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZVE-03A-01D_TARGET-20-PARZVE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-02D	DNA	EFO	SRS628759	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZWH-09A-02D A32238 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32238	SRX574455	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZWH-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARZWH-09A-02D A32238 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32238_1_lane_dupsFlagged.bam	SRR1344905	@dbgap@:reads/SRP012000/SRS628759/SRX574455/SRR1344905/SRR1344905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZWH-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZWH-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-02D	DNA	EFO	SRS628759	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZWH-09A-02D A32238 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32238	SRX574455	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZWH-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARZWH-09A-02D A32238 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32238_1_lane_dupsFlagged.bam	SRR1344905	@dbgap@:reads/SRP012000/SRS628759/SRX574455/SRR1344905/SRR1344905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZWH-09A-02D_TARGET-20-PARZWH-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-02D	DNA	EFO	SRS628759	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZWH-09A-02D A32238 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32238	SRX574455	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZWH-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARZWH-09A-02D A32238 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32238_1_lane_dupsFlagged.bam	SRR1344905	@dbgap@:reads/SRP012000/SRS628759/SRX574455/SRR1344905/SRR1344905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZWH-09A-02D_TARGET-20-PARZWH-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-14A-02D	DNA	EFO	SRS635878	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZWH-14A-02D A42485 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42485	SRX593838	"Specific Capture analysis of normal sample TARGET-20-PARZWH-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARZWH-14A-02D A42485 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42485_1_lane_dupsFlagged.bam	SRR1386329	@dbgap@:reads/SRP012000/SRS635878/SRX593838/SRR1386329/SRR1386329.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZWH-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZWH-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-14A-02D	DNA	EFO	SRS635878	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZWH-14A-02D A42485 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42485	SRX593838	"Specific Capture analysis of normal sample TARGET-20-PARZWH-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARZWH-14A-02D A42485 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42485_1_lane_dupsFlagged.bam	SRR1386329	@dbgap@:reads/SRP012000/SRS635878/SRX593838/SRR1386329/SRR1386329.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZWH-09A-02D_TARGET-20-PARZWH-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-14A-02D	DNA	EFO	SRS635878	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZWH-14A-02D A42485 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42485	SRX593838	"Specific Capture analysis of normal sample TARGET-20-PARZWH-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PARZWH-14A-02D A42485 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42485_1_lane_dupsFlagged.bam	SRR1386329	@dbgap@:reads/SRP012000/SRS635878/SRX593838/SRR1386329/SRR1386329.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZWH-09A-02D_TARGET-20-PARZWH-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZYF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZYF-09A-01D	DNA	EFO	SRS629179	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZYF-09A-01D A33360 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33360	SRX575235	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZYF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARZYF-09A-01D A33360 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33360_1_lane_dupsFlagged.bam	SRR1346433	@dbgap@:reads/SRP012000/SRS629179/SRX575235/SRR1346433/SRR1346433.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZYF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZYF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARZYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZYF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZYF-09A-01D	DNA	EFO	SRS629179	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZYF-09A-01D A33360 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33360	SRX575235	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZYF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARZYF-09A-01D A33360 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33360_1_lane_dupsFlagged.bam	SRR1346433	@dbgap@:reads/SRP012000/SRS629179/SRX575235/SRR1346433/SRR1346433.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZYF-09A-01D_TARGET-20-PARZYF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZYF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZYF-09A-01D	DNA	EFO	SRS629179	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZYF-09A-01D A33360 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33360	SRX575235	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZYF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PARZYF-09A-01D A33360 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33360_1_lane_dupsFlagged.bam	SRR1346433	@dbgap@:reads/SRP012000/SRS629179/SRX575235/SRR1346433/SRR1346433.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZYF-09A-01D_TARGET-20-PARZYF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZYF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZYF-14A-01D	DNA	EFO	SRS634695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZYF-14A-01D A41585 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41585	SRX590796	"Specific Capture analysis of normal sample TARGET-20-PARZYF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZYF-14A-01D A41585 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41585_1_lane_dupsFlagged.bam	SRR1379871	@dbgap@:reads/SRP012000/SRS634695/SRX590796/SRR1379871/SRR1379871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZYF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZYF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARZYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZYF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZYF-14A-01D	DNA	EFO	SRS634695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZYF-14A-01D A41585 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41585	SRX590796	"Specific Capture analysis of normal sample TARGET-20-PARZYF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZYF-14A-01D A41585 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41585_1_lane_dupsFlagged.bam	SRR1379871	@dbgap@:reads/SRP012000/SRS634695/SRX590796/SRR1379871/SRR1379871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZYF-09A-01D_TARGET-20-PARZYF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZYF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZYF-14A-01D	DNA	EFO	SRS634695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZYF-14A-01D A41585 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41585	SRX590796	"Specific Capture analysis of normal sample TARGET-20-PARZYF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZYF-14A-01D A41585 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41585_1_lane_dupsFlagged.bam	SRR1379871	@dbgap@:reads/SRP012000/SRS634695/SRX590796/SRR1379871/SRR1379871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZYF-09A-01D_TARGET-20-PARZYF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZYL-09A-01D	DNA	EFO	SRS635450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZYL-09A-01D A41770 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41770	SRX593172	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZYL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZYL-09A-01D A41770 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41770_1_lane_dupsFlagged.bam	SRR1385605	@dbgap@:reads/SRP012000/SRS635450/SRX593172/SRR1385605/SRR1385605.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZYL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZYL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARZYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZYL-09A-01D	DNA	EFO	SRS635450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZYL-09A-01D A41770 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41770	SRX593172	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZYL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZYL-09A-01D A41770 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41770_1_lane_dupsFlagged.bam	SRR1385605	@dbgap@:reads/SRP012000/SRS635450/SRX593172/SRR1385605/SRR1385605.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZYL-09A-01D_TARGET-20-PARZYL-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZYL-09A-01D	DNA	EFO	SRS635450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZYL-09A-01D A41770 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41770	SRX593172	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZYL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PARZYL-09A-01D A41770 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41770_1_lane_dupsFlagged.bam	SRR1385605	@dbgap@:reads/SRP012000/SRS635450/SRX593172/SRR1385605/SRR1385605.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZYL-09A-01D_TARGET-20-PARZYL-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZYL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZYL-14A-02D	DNA	EFO	SRS635944	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZYL-14A-02D A42547 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42547	SRX593905	"Specific Capture analysis of normal sample TARGET-20-PARZYL-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARZYL-14A-02D A42547 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42547_1_lane_dupsFlagged.bam	SRR1386344	@dbgap@:reads/SRP012000/SRS635944/SRX593905/SRR1386344/SRR1386344.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZYL-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZYL-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARZYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZYL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZYL-14A-02D	DNA	EFO	SRS635944	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZYL-14A-02D A42547 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42547	SRX593905	"Specific Capture analysis of normal sample TARGET-20-PARZYL-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARZYL-14A-02D A42547 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42547_1_lane_dupsFlagged.bam	SRR1386344	@dbgap@:reads/SRP012000/SRS635944/SRX593905/SRR1386344/SRR1386344.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZYL-09A-01D_TARGET-20-PARZYL-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZYL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZYL-14A-02D	DNA	EFO	SRS635944	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZYL-14A-02D A42547 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42547	SRX593905	"Specific Capture analysis of normal sample TARGET-20-PARZYL-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARZYL-14A-02D A42547 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42547_1_lane_dupsFlagged.bam	SRR1386344	@dbgap@:reads/SRP012000/SRS635944/SRX593905/SRR1386344/SRR1386344.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZYL-09A-01D_TARGET-20-PARZYL-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZYN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZYN-03A-01D	DNA	EFO	SRS633654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZYN-03A-01D A33409 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33409	SRX587948	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZYN-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARZYN-03A-01D A33409 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33409_1_lane_dupsFlagged.bam	SRR1373782	@dbgap@:reads/SRP012000/SRS633654/SRX587948/SRR1373782/SRR1373782.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZYN-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZYN-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PARZYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZYN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZYN-03A-01D	DNA	EFO	SRS633654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZYN-03A-01D A33409 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33409	SRX587948	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZYN-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARZYN-03A-01D A33409 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33409_1_lane_dupsFlagged.bam	SRR1373782	@dbgap@:reads/SRP012000/SRS633654/SRX587948/SRR1373782/SRR1373782.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZYN-03A-01D_TARGET-20-PARZYN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZYN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZYN-03A-01D	DNA	EFO	SRS633654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZYN-03A-01D A33409 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33409	SRX587948	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PARZYN-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PARZYN-03A-01D A33409 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33409_1_lane_dupsFlagged.bam	SRR1373782	@dbgap@:reads/SRP012000/SRS633654/SRX587948/SRR1373782/SRR1373782.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZYN-03A-01D_TARGET-20-PARZYN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PARZYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZYN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZYN-14A-01D	DNA	EFO	SRS635910	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZYN-14A-01D A42487 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42487	SRX593870	"Specific Capture analysis of normal sample TARGET-20-PARZYN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARZYN-14A-01D A42487 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42487_1_lane_dupsFlagged.bam	SRR1386388	@dbgap@:reads/SRP012000/SRS635910/SRX593870/SRR1386388/SRR1386388.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PARZYN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PARZYN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PARZYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZYN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZYN-14A-01D	DNA	EFO	SRS635910	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZYN-14A-01D A42487 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42487	SRX593870	"Specific Capture analysis of normal sample TARGET-20-PARZYN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARZYN-14A-01D A42487 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42487_1_lane_dupsFlagged.bam	SRR1386388	@dbgap@:reads/SRP012000/SRS635910/SRX593870/SRR1386388/SRR1386388.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZYN-03A-01D_TARGET-20-PARZYN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PARZYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PARZYN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZYN-14A-01D	DNA	EFO	SRS635910	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZYN-14A-01D A42487 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42487	SRX593870	"Specific Capture analysis of normal sample TARGET-20-PARZYN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PARZYN-14A-01D A42487 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42487_1_lane_dupsFlagged.bam	SRR1386388	@dbgap@:reads/SRP012000/SRS635910/SRX593870/SRR1386388/SRR1386388.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PARZYN-03A-01D_TARGET-20-PARZYN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASADG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASADG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASADG-03A-01D	DNA	EFO	SRS628741	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASADG-03A-01D A32239 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32239	SRX574436	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASADG-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASADG-03A-01D A32239 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32239_1_lane_dupsFlagged.bam	SRR1344854	@dbgap@:reads/SRP012000/SRS628741/SRX574436/SRR1344854/SRR1344854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASADG-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASADG-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASADG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASADG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASADG-03A-01D	DNA	EFO	SRS628741	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASADG-03A-01D A32239 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32239	SRX574436	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASADG-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASADG-03A-01D A32239 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32239_1_lane_dupsFlagged.bam	SRR1344854	@dbgap@:reads/SRP012000/SRS628741/SRX574436/SRR1344854/SRR1344854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASADG-03A-01D_TARGET-20-PASADG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASADG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASADG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASADG-03A-01D	DNA	EFO	SRS628741	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASADG-03A-01D A32239 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32239	SRX574436	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASADG-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASADG-03A-01D A32239 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32239_1_lane_dupsFlagged.bam	SRR1344854	@dbgap@:reads/SRP012000/SRS628741/SRX574436/SRR1344854/SRR1344854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASADG-03A-01D_TARGET-20-PASADG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASADG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASADG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASADG-04A-01D	DNA	EFO	SRS637352	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASADG-04A-01D A42208 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42208	SRX597754	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASADG-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASADG-04A-01D A42208 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42208_1_lane_dupsFlagged.bam	SRR1394975	@dbgap@:reads/SRP012000/SRS637352/SRX597754/SRR1394975/SRR1394975.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASADG-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASADG-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASADG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASADG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASADG-04A-01D	DNA	EFO	SRS637352	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASADG-04A-01D A42208 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42208	SRX597754	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASADG-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASADG-04A-01D A42208 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42208_1_lane_dupsFlagged.bam	SRR1394975	@dbgap@:reads/SRP012000/SRS637352/SRX597754/SRR1394975/SRR1394975.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASADG-04A-01D_TARGET-20-PASADG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASADG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASADG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASADG-04A-01D	DNA	EFO	SRS637352	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASADG-04A-01D A42208 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42208	SRX597754	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASADG-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASADG-04A-01D A42208 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42208_1_lane_dupsFlagged.bam	SRR1394975	@dbgap@:reads/SRP012000/SRS637352/SRX597754/SRR1394975/SRR1394975.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASADG-04A-01D_TARGET-20-PASADG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASADG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASADG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASADG-14A-01D	DNA	EFO	SRS635908	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASADG-14A-01D A42486 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42486	SRX593867	"Specific Capture analysis of normal sample TARGET-20-PASADG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASADG-14A-01D A42486 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42486_1_lane_dupsFlagged.bam	SRR1386338	@dbgap@:reads/SRP012000/SRS635908/SRX593867/SRR1386338/SRR1386338.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASADG-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASADG-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASADG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASADG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASADG-14A-01D	DNA	EFO	SRS635908	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASADG-14A-01D A42486 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42486	SRX593867	"Specific Capture analysis of normal sample TARGET-20-PASADG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASADG-14A-01D A42486 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42486_1_lane_dupsFlagged.bam	SRR1386338	@dbgap@:reads/SRP012000/SRS635908/SRX593867/SRR1386338/SRR1386338.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASADG-03A-01D_TARGET-20-PASADG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASADG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASADG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASADG-14A-01D	DNA	EFO	SRS635908	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASADG-14A-01D A42486 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42486	SRX593867	"Specific Capture analysis of normal sample TARGET-20-PASADG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASADG-14A-01D A42486 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42486_1_lane_dupsFlagged.bam	SRR1386338	@dbgap@:reads/SRP012000/SRS635908/SRX593867/SRR1386338/SRR1386338.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASADG-03A-01D_TARGET-20-PASADG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASADG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASADG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASADG-14A-01D	DNA	EFO	SRS635908	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASADG-14A-01D A42486 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42486	SRX593867	"Specific Capture analysis of normal sample TARGET-20-PASADG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASADG-14A-01D A42486 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42486_1_lane_dupsFlagged.bam	SRR1386338	@dbgap@:reads/SRP012000/SRS635908/SRX593867/SRR1386338/SRR1386338.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASADG-04A-01D_TARGET-20-PASADG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASADG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASADG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASADG-14A-01D	DNA	EFO	SRS635908	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASADG-14A-01D A42486 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42486	SRX593867	"Specific Capture analysis of normal sample TARGET-20-PASADG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASADG-14A-01D A42486 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42486_1_lane_dupsFlagged.bam	SRR1386338	@dbgap@:reads/SRP012000/SRS635908/SRX593867/SRR1386338/SRR1386338.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASADG-04A-01D_TARGET-20-PASADG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASAFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAFH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFH-09A-01D	DNA	EFO	SRS635431	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAFH-09A-01D A41771 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41771	SRX593153	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAFH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASAFH-09A-01D A41771 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41771_1_lane_dupsFlagged.bam	SRR1385591	@dbgap@:reads/SRP012000/SRS635431/SRX593153/SRR1385591/SRR1385591.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASAFH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASAFH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASAFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAFH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFH-09A-01D	DNA	EFO	SRS635431	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAFH-09A-01D A41771 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41771	SRX593153	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAFH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASAFH-09A-01D A41771 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41771_1_lane_dupsFlagged.bam	SRR1385591	@dbgap@:reads/SRP012000/SRS635431/SRX593153/SRR1385591/SRR1385591.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAFH-09A-01D_TARGET-20-PASAFH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASAFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAFH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFH-09A-01D	DNA	EFO	SRS635431	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAFH-09A-01D A41771 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41771	SRX593153	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAFH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASAFH-09A-01D A41771 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41771_1_lane_dupsFlagged.bam	SRR1385591	@dbgap@:reads/SRP012000/SRS635431/SRX593153/SRR1385591/SRR1385591.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAFH-09A-01D_TARGET-20-PASAFH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASAFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAFH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFH-14A-01D	DNA	EFO	SRS634699	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAFH-14A-01D A41580 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41580	SRX590801	"Specific Capture analysis of normal sample TARGET-20-PASAFH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASAFH-14A-01D A41580 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41580_1_lane_dupsFlagged.bam	SRR1379876	@dbgap@:reads/SRP012000/SRS634699/SRX590801/SRR1379876/SRR1379876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASAFH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASAFH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASAFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAFH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFH-14A-01D	DNA	EFO	SRS634699	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAFH-14A-01D A41580 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41580	SRX590801	"Specific Capture analysis of normal sample TARGET-20-PASAFH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASAFH-14A-01D A41580 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41580_1_lane_dupsFlagged.bam	SRR1379876	@dbgap@:reads/SRP012000/SRS634699/SRX590801/SRR1379876/SRR1379876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAFH-09A-01D_TARGET-20-PASAFH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASAFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAFH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFH-14A-01D	DNA	EFO	SRS634699	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAFH-14A-01D A41580 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41580	SRX590801	"Specific Capture analysis of normal sample TARGET-20-PASAFH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASAFH-14A-01D A41580 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41580_1_lane_dupsFlagged.bam	SRR1379876	@dbgap@:reads/SRP012000/SRS634699/SRX590801/SRR1379876/SRR1379876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAFH-09A-01D_TARGET-20-PASAFH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01D	DNA	EFO	SRS628293	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAFM-09A-01D A31228 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31228	SRX573353	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAFM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASAFM-09A-01D A31228 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31228_1_lane_dupsFlagged.bam	SRR1342682	@dbgap@:reads/SRP012000/SRS628293/SRX573353/SRR1342682/SRR1342682.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASAFM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASAFM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01D	DNA	EFO	SRS628293	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAFM-09A-01D A31228 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31228	SRX573353	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAFM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASAFM-09A-01D A31228 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31228_1_lane_dupsFlagged.bam	SRR1342682	@dbgap@:reads/SRP012000/SRS628293/SRX573353/SRR1342682/SRR1342682.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAFM-09A-01D_TARGET-20-PASAFM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01D	DNA	EFO	SRS628293	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAFM-09A-01D A31228 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31228	SRX573353	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAFM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASAFM-09A-01D A31228 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31228_1_lane_dupsFlagged.bam	SRR1342682	@dbgap@:reads/SRP012000/SRS628293/SRX573353/SRR1342682/SRR1342682.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAFM-09A-01D_TARGET-20-PASAFM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-14A-01D	DNA	EFO	SRS637413	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAFM-14A-01D A42806 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42806	SRX597821	"Specific Capture analysis of normal sample TARGET-20-PASAFM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASAFM-14A-01D A42806 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42806_1_lane_dupsFlagged.bam	SRR1395050	@dbgap@:reads/SRP012000/SRS637413/SRX597821/SRR1395050/SRR1395050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASAFM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASAFM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-14A-01D	DNA	EFO	SRS637413	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAFM-14A-01D A42806 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42806	SRX597821	"Specific Capture analysis of normal sample TARGET-20-PASAFM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASAFM-14A-01D A42806 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42806_1_lane_dupsFlagged.bam	SRR1395050	@dbgap@:reads/SRP012000/SRS637413/SRX597821/SRR1395050/SRR1395050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAFM-09A-01D_TARGET-20-PASAFM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-14A-01D	DNA	EFO	SRS637413	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAFM-14A-01D A42806 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42806	SRX597821	"Specific Capture analysis of normal sample TARGET-20-PASAFM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASAFM-14A-01D A42806 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42806_1_lane_dupsFlagged.bam	SRR1395050	@dbgap@:reads/SRP012000/SRS637413/SRX597821/SRR1395050/SRR1395050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAFM-09A-01D_TARGET-20-PASAFM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASAMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAMY-09A-01D	DNA	EFO	SRS633692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAMY-09A-01D A33411 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33411	SRX587985	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAMY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASAMY-09A-01D A33411 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33411_1_lane_dupsFlagged.bam	SRR1373846	@dbgap@:reads/SRP012000/SRS633692/SRX587985/SRR1373846/SRR1373846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASAMY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASAMY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASAMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAMY-09A-01D	DNA	EFO	SRS633692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAMY-09A-01D A33411 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33411	SRX587985	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAMY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASAMY-09A-01D A33411 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33411_1_lane_dupsFlagged.bam	SRR1373846	@dbgap@:reads/SRP012000/SRS633692/SRX587985/SRR1373846/SRR1373846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAMY-09A-01D_TARGET-20-PASAMY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASAMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAMY-09A-01D	DNA	EFO	SRS633692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAMY-09A-01D A33411 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33411	SRX587985	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAMY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASAMY-09A-01D A33411 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33411_1_lane_dupsFlagged.bam	SRR1373846	@dbgap@:reads/SRP012000/SRS633692/SRX587985/SRR1373846/SRR1373846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAMY-09A-01D_TARGET-20-PASAMY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASAMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAMY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAMY-14A-01D	DNA	EFO	SRS634747	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAMY-14A-01D A41593 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41593	SRX590863	"Specific Capture analysis of normal sample TARGET-20-PASAMY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASAMY-14A-01D A41593 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41593_1_lane_dupsFlagged.bam	SRR1379813	@dbgap@:reads/SRP012000/SRS634747/SRX590863/SRR1379813/SRR1379813.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASAMY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASAMY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASAMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAMY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAMY-14A-01D	DNA	EFO	SRS634747	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAMY-14A-01D A41593 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41593	SRX590863	"Specific Capture analysis of normal sample TARGET-20-PASAMY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASAMY-14A-01D A41593 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41593_1_lane_dupsFlagged.bam	SRR1379813	@dbgap@:reads/SRP012000/SRS634747/SRX590863/SRR1379813/SRR1379813.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAMY-09A-01D_TARGET-20-PASAMY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASAMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAMY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAMY-14A-01D	DNA	EFO	SRS634747	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAMY-14A-01D A41593 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41593	SRX590863	"Specific Capture analysis of normal sample TARGET-20-PASAMY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASAMY-14A-01D A41593 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41593_1_lane_dupsFlagged.bam	SRR1379813	@dbgap@:reads/SRP012000/SRS634747/SRX590863/SRR1379813/SRR1379813.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAMY-09A-01D_TARGET-20-PASAMY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASANH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASANH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASANH-09A-01D	DNA	EFO	SRS628757	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASANH-09A-01D A32240 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32240	SRX574453	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASANH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASANH-09A-01D A32240 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32240_1_lane_dupsFlagged.bam	SRR1344898	@dbgap@:reads/SRP012000/SRS628757/SRX574453/SRR1344898/SRR1344898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASANH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASANH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASANH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASANH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASANH-09A-01D	DNA	EFO	SRS628757	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASANH-09A-01D A32240 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32240	SRX574453	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASANH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASANH-09A-01D A32240 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32240_1_lane_dupsFlagged.bam	SRR1344898	@dbgap@:reads/SRP012000/SRS628757/SRX574453/SRR1344898/SRR1344898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASANH-09A-01D_TARGET-20-PASANH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASANH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASANH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASANH-09A-01D	DNA	EFO	SRS628757	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASANH-09A-01D A32240 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32240	SRX574453	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASANH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASANH-09A-01D A32240 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32240_1_lane_dupsFlagged.bam	SRR1344898	@dbgap@:reads/SRP012000/SRS628757/SRX574453/SRR1344898/SRR1344898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASANH-09A-01D_TARGET-20-PASANH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASANH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASANH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASANH-14A-01D	DNA	EFO	SRS634742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASANH-14A-01D A41592 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41592	SRX590857	"Specific Capture analysis of normal sample TARGET-20-PASANH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASANH-14A-01D A41592 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41592_1_lane_dupsFlagged.bam	SRR1379824	@dbgap@:reads/SRP012000/SRS634742/SRX590857/SRR1379824/SRR1379824.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASANH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASANH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASANH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASANH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASANH-14A-01D	DNA	EFO	SRS634742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASANH-14A-01D A41592 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41592	SRX590857	"Specific Capture analysis of normal sample TARGET-20-PASANH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASANH-14A-01D A41592 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41592_1_lane_dupsFlagged.bam	SRR1379824	@dbgap@:reads/SRP012000/SRS634742/SRX590857/SRR1379824/SRR1379824.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASANH-09A-01D_TARGET-20-PASANH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASANH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASANH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASANH-14A-01D	DNA	EFO	SRS634742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASANH-14A-01D A41592 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41592	SRX590857	"Specific Capture analysis of normal sample TARGET-20-PASANH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASANH-14A-01D A41592 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41592_1_lane_dupsFlagged.bam	SRR1379824	@dbgap@:reads/SRP012000/SRS634742/SRX590857/SRR1379824/SRR1379824.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASANH-09A-01D_TARGET-20-PASANH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASANW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASANW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASANW-09A-01D	DNA	EFO	SRS629183	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASANW-09A-01D A33361 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33361	SRX575240	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASANW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-20-PASANW-09A-01D A33361 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33361_1_lane_dupsFlagged.bam	SRR1346482	@dbgap@:reads/SRP012000/SRS629183/SRX575240/SRR1346482/SRR1346482.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASANW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASANW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASANW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASANW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASANW-09A-01D	DNA	EFO	SRS629183	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASANW-09A-01D A33361 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33361	SRX575240	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASANW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-20-PASANW-09A-01D A33361 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33361_1_lane_dupsFlagged.bam	SRR1346482	@dbgap@:reads/SRP012000/SRS629183/SRX575240/SRR1346482/SRR1346482.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASANW-09A-01D_TARGET-20-PASANW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASANW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASANW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASANW-09A-01D	DNA	EFO	SRS629183	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASANW-09A-01D A33361 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33361	SRX575240	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASANW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-20-PASANW-09A-01D A33361 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33361_1_lane_dupsFlagged.bam	SRR1346482	@dbgap@:reads/SRP012000/SRS629183/SRX575240/SRR1346482/SRR1346482.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASANW-09A-01D_TARGET-20-PASANW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASANW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASANW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASANW-14A-01D	DNA	EFO	SRS635685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASANW-14A-01D A41687 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41687	SRX593508	"Specific Capture analysis of normal sample TARGET-20-PASANW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASANW-14A-01D A41687 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41687_1_lane_dupsFlagged.bam	SRR1385956	@dbgap@:reads/SRP012000/SRS635685/SRX593508/SRR1385956/SRR1385956.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASANW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASANW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASANW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASANW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASANW-14A-01D	DNA	EFO	SRS635685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASANW-14A-01D A41687 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41687	SRX593508	"Specific Capture analysis of normal sample TARGET-20-PASANW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASANW-14A-01D A41687 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41687_1_lane_dupsFlagged.bam	SRR1385956	@dbgap@:reads/SRP012000/SRS635685/SRX593508/SRR1385956/SRR1385956.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASANW-09A-01D_TARGET-20-PASANW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASANW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASANW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASANW-14A-01D	DNA	EFO	SRS635685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASANW-14A-01D A41687 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41687	SRX593508	"Specific Capture analysis of normal sample TARGET-20-PASANW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASANW-14A-01D A41687 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41687_1_lane_dupsFlagged.bam	SRR1385956	@dbgap@:reads/SRP012000/SRS635685/SRX593508/SRR1385956/SRR1385956.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASANW-09A-01D_TARGET-20-PASANW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASARF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASARF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASARF-09A-01D	DNA	EFO	SRS635491	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASARF-09A-01D A41772 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41772	SRX593213	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASARF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASARF-09A-01D A41772 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41772_1_lane_dupsFlagged.bam	SRR1385650	@dbgap@:reads/SRP012000/SRS635491/SRX593213/SRR1385650/SRR1385650.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASARF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASARF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASARK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASARK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASARK-09A-01D	DNA	EFO	SRS628892	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASARK-09A-01D A32331 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32331	SRX574948	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASARK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASARK-09A-01D A32331 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32331_1_lane_dupsFlagged.bam	SRR1346156	@dbgap@:reads/SRP012000/SRS628892/SRX574948/SRR1346156/SRR1346156.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASARK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASARK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASARK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASARK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASARK-09A-01D	DNA	EFO	SRS628892	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASARK-09A-01D A32331 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32331	SRX574948	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASARK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASARK-09A-01D A32331 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32331_1_lane_dupsFlagged.bam	SRR1346156	@dbgap@:reads/SRP012000/SRS628892/SRX574948/SRR1346156/SRR1346156.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASARK-09A-01D_TARGET-20-PASARK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASARK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASARK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASARK-09A-01D	DNA	EFO	SRS628892	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASARK-09A-01D A32331 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32331	SRX574948	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASARK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASARK-09A-01D A32331 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32331_1_lane_dupsFlagged.bam	SRR1346156	@dbgap@:reads/SRP012000/SRS628892/SRX574948/SRR1346156/SRR1346156.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASARK-09A-01D_TARGET-20-PASARK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASARK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASARK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASARK-14A-01D	DNA	EFO	SRS634734	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASARK-14A-01D A41588 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41588	SRX590846	"Specific Capture analysis of normal sample TARGET-20-PASARK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASARK-14A-01D A41588 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41588_1_lane_dupsFlagged.bam	SRR1379881	@dbgap@:reads/SRP012000/SRS634734/SRX590846/SRR1379881/SRR1379881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASARK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASARK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASARK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASARK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASARK-14A-01D	DNA	EFO	SRS634734	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASARK-14A-01D A41588 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41588	SRX590846	"Specific Capture analysis of normal sample TARGET-20-PASARK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASARK-14A-01D A41588 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41588_1_lane_dupsFlagged.bam	SRR1379881	@dbgap@:reads/SRP012000/SRS634734/SRX590846/SRR1379881/SRR1379881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASARK-09A-01D_TARGET-20-PASARK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASARK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASARK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASARK-14A-01D	DNA	EFO	SRS634734	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASARK-14A-01D A41588 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41588	SRX590846	"Specific Capture analysis of normal sample TARGET-20-PASARK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASARK-14A-01D A41588 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41588_1_lane_dupsFlagged.bam	SRR1379881	@dbgap@:reads/SRP012000/SRS634734/SRX590846/SRR1379881/SRR1379881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASARK-09A-01D_TARGET-20-PASARK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASARM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASARM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASARM-03A-01D	DNA	EFO	SRS633633	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASARM-03A-01D A33439 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33439	SRX587927	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASARM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASARM-03A-01D A33439 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33439_1_lane_dupsFlagged.bam	SRR1373838	@dbgap@:reads/SRP012000/SRS633633/SRX587927/SRR1373838/SRR1373838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASARM-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASARM-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASARM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASARM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASARM-03A-01D	DNA	EFO	SRS633633	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASARM-03A-01D A33439 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33439	SRX587927	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASARM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASARM-03A-01D A33439 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33439_1_lane_dupsFlagged.bam	SRR1373838	@dbgap@:reads/SRP012000/SRS633633/SRX587927/SRR1373838/SRR1373838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASARM-03A-01D_TARGET-20-PASARM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASARM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASARM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASARM-03A-01D	DNA	EFO	SRS633633	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASARM-03A-01D A33439 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33439	SRX587927	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASARM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASARM-03A-01D A33439 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33439_1_lane_dupsFlagged.bam	SRR1373838	@dbgap@:reads/SRP012000/SRS633633/SRX587927/SRR1373838/SRR1373838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASARM-03A-01D_TARGET-20-PASARM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASARM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASARM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASARM-04A-01D	DNA	EFO	SRS637534	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASARM-04A-01D A42714 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42714	SRX597972	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASARM-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASARM-04A-01D A42714 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42714_1_lane_dupsFlagged.bam	SRR1395239	@dbgap@:reads/SRP012000/SRS637534/SRX597972/SRR1395239/SRR1395239.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASARM-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASARM-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASARM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASARM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASARM-04A-01D	DNA	EFO	SRS637534	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASARM-04A-01D A42714 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42714	SRX597972	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASARM-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASARM-04A-01D A42714 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42714_1_lane_dupsFlagged.bam	SRR1395239	@dbgap@:reads/SRP012000/SRS637534/SRX597972/SRR1395239/SRR1395239.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASARM-04A-01D_TARGET-20-PASARM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASARM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASARM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASARM-04A-01D	DNA	EFO	SRS637534	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASARM-04A-01D A42714 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42714	SRX597972	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASARM-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASARM-04A-01D A42714 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42714_1_lane_dupsFlagged.bam	SRR1395239	@dbgap@:reads/SRP012000/SRS637534/SRX597972/SRR1395239/SRR1395239.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASARM-04A-01D_TARGET-20-PASARM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASARM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASARM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASARM-14A-01D	DNA	EFO	SRS634720	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASARM-14A-01D A41587 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41587	SRX590828	"Specific Capture analysis of normal sample TARGET-20-PASARM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASARM-14A-01D A41587 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41587_1_lane_dupsFlagged.bam	SRR1379875	@dbgap@:reads/SRP012000/SRS634720/SRX590828/SRR1379875/SRR1379875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASARM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASARM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASARM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASARM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASARM-14A-01D	DNA	EFO	SRS634720	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASARM-14A-01D A41587 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41587	SRX590828	"Specific Capture analysis of normal sample TARGET-20-PASARM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASARM-14A-01D A41587 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41587_1_lane_dupsFlagged.bam	SRR1379875	@dbgap@:reads/SRP012000/SRS634720/SRX590828/SRR1379875/SRR1379875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASARM-03A-01D_TARGET-20-PASARM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASARM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASARM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASARM-14A-01D	DNA	EFO	SRS634720	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASARM-14A-01D A41587 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41587	SRX590828	"Specific Capture analysis of normal sample TARGET-20-PASARM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASARM-14A-01D A41587 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41587_1_lane_dupsFlagged.bam	SRR1379875	@dbgap@:reads/SRP012000/SRS634720/SRX590828/SRR1379875/SRR1379875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASARM-03A-01D_TARGET-20-PASARM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASARM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASARM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASARM-14A-01D	DNA	EFO	SRS634720	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASARM-14A-01D A41587 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41587	SRX590828	"Specific Capture analysis of normal sample TARGET-20-PASARM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASARM-14A-01D A41587 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41587_1_lane_dupsFlagged.bam	SRR1379875	@dbgap@:reads/SRP012000/SRS634720/SRX590828/SRR1379875/SRR1379875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASARM-04A-01D_TARGET-20-PASARM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASARM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASARM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASARM-14A-01D	DNA	EFO	SRS634720	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASARM-14A-01D A41587 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41587	SRX590828	"Specific Capture analysis of normal sample TARGET-20-PASARM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASARM-14A-01D A41587 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41587_1_lane_dupsFlagged.bam	SRR1379875	@dbgap@:reads/SRP012000/SRS634720/SRX590828/SRR1379875/SRR1379875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASARM-04A-01D_TARGET-20-PASARM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASASN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASASN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASASN-03A-01D	DNA	EFO	SRS633647	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASASN-03A-01D A33410 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33410	SRX587940	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASASN-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASASN-03A-01D A33410 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33410_1_lane_dupsFlagged.bam	SRR1373835	@dbgap@:reads/SRP012000/SRS633647/SRX587940/SRR1373835/SRR1373835.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASASN-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASASN-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASASN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASASN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASASN-03A-01D	DNA	EFO	SRS633647	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASASN-03A-01D A33410 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33410	SRX587940	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASASN-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASASN-03A-01D A33410 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33410_1_lane_dupsFlagged.bam	SRR1373835	@dbgap@:reads/SRP012000/SRS633647/SRX587940/SRR1373835/SRR1373835.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASASN-03A-01D_TARGET-20-PASASN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASASN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASASN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASASN-03A-01D	DNA	EFO	SRS633647	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASASN-03A-01D A33410 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33410	SRX587940	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASASN-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASASN-03A-01D A33410 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33410_1_lane_dupsFlagged.bam	SRR1373835	@dbgap@:reads/SRP012000/SRS633647/SRX587940/SRR1373835/SRR1373835.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASASN-03A-01D_TARGET-20-PASASN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASASN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASASN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASASN-04A-01D	DNA	EFO	SRS637310	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASASN-04A-01D A42248 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42248	SRX597676	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASASN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASASN-04A-01D A42248 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42248_1_lane_dupsFlagged.bam	SRR1395023	@dbgap@:reads/SRP012000/SRS637310/SRX597676/SRR1395023/SRR1395023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASASN-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASASN-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASASN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASASN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASASN-04A-01D	DNA	EFO	SRS637310	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASASN-04A-01D A42248 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42248	SRX597676	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASASN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASASN-04A-01D A42248 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42248_1_lane_dupsFlagged.bam	SRR1395023	@dbgap@:reads/SRP012000/SRS637310/SRX597676/SRR1395023/SRR1395023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASASN-04A-01D_TARGET-20-PASASN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASASN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASASN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASASN-04A-01D	DNA	EFO	SRS637310	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASASN-04A-01D A42248 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42248	SRX597676	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASASN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASASN-04A-01D A42248 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42248_1_lane_dupsFlagged.bam	SRR1395023	@dbgap@:reads/SRP012000/SRS637310/SRX597676/SRR1395023/SRR1395023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASASN-04A-01D_TARGET-20-PASASN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASASN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASASN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASASN-14A-01D	DNA	EFO	SRS634707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASASN-14A-01D A41586 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41586	SRX590813	"Specific Capture analysis of normal sample TARGET-20-PASASN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASASN-14A-01D A41586 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41586_1_lane_dupsFlagged.bam	SRR1379820	@dbgap@:reads/SRP012000/SRS634707/SRX590813/SRR1379820/SRR1379820.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASASN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASASN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASASN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASASN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASASN-14A-01D	DNA	EFO	SRS634707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASASN-14A-01D A41586 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41586	SRX590813	"Specific Capture analysis of normal sample TARGET-20-PASASN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASASN-14A-01D A41586 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41586_1_lane_dupsFlagged.bam	SRR1379820	@dbgap@:reads/SRP012000/SRS634707/SRX590813/SRR1379820/SRR1379820.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASASN-03A-01D_TARGET-20-PASASN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASASN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASASN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASASN-14A-01D	DNA	EFO	SRS634707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASASN-14A-01D A41586 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41586	SRX590813	"Specific Capture analysis of normal sample TARGET-20-PASASN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASASN-14A-01D A41586 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41586_1_lane_dupsFlagged.bam	SRR1379820	@dbgap@:reads/SRP012000/SRS634707/SRX590813/SRR1379820/SRR1379820.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASASN-03A-01D_TARGET-20-PASASN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASASN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASASN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASASN-14A-01D	DNA	EFO	SRS634707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASASN-14A-01D A41586 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41586	SRX590813	"Specific Capture analysis of normal sample TARGET-20-PASASN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASASN-14A-01D A41586 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41586_1_lane_dupsFlagged.bam	SRR1379820	@dbgap@:reads/SRP012000/SRS634707/SRX590813/SRR1379820/SRR1379820.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASASN-04A-01D_TARGET-20-PASASN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASASN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASASN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASASN-14A-01D	DNA	EFO	SRS634707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASASN-14A-01D A41586 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41586	SRX590813	"Specific Capture analysis of normal sample TARGET-20-PASASN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASASN-14A-01D A41586 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41586_1_lane_dupsFlagged.bam	SRR1379820	@dbgap@:reads/SRP012000/SRS634707/SRX590813/SRR1379820/SRR1379820.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASASN-04A-01D_TARGET-20-PASASN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASAUN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAUN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUN-09A-01D	DNA	EFO	SRS635460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAUN-09A-01D A41773 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41773	SRX593182	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAUN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASAUN-09A-01D A41773 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41773_1_lane_dupsFlagged.bam	SRR1385668	@dbgap@:reads/SRP012000/SRS635460/SRX593182/SRR1385668/SRR1385668.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASAUN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASAUN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASAUN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAUN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUN-09A-01D	DNA	EFO	SRS635460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAUN-09A-01D A41773 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41773	SRX593182	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAUN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASAUN-09A-01D A41773 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41773_1_lane_dupsFlagged.bam	SRR1385668	@dbgap@:reads/SRP012000/SRS635460/SRX593182/SRR1385668/SRR1385668.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAUN-09A-01D_TARGET-20-PASAUN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASAUN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAUN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUN-09A-01D	DNA	EFO	SRS635460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAUN-09A-01D A41773 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41773	SRX593182	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAUN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASAUN-09A-01D A41773 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41773_1_lane_dupsFlagged.bam	SRR1385668	@dbgap@:reads/SRP012000/SRS635460/SRX593182/SRR1385668/SRR1385668.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAUN-09A-01D_TARGET-20-PASAUN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASAUN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAUN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUN-14A-01D	DNA	EFO	SRS634738	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAUN-14A-01D A41589 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41589	SRX590852	"Specific Capture analysis of normal sample TARGET-20-PASAUN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASAUN-14A-01D A41589 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41589_1_lane_dupsFlagged.bam	SRR1379859	@dbgap@:reads/SRP012000/SRS634738/SRX590852/SRR1379859/SRR1379859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASAUN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASAUN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASAUN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAUN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUN-14A-01D	DNA	EFO	SRS634738	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAUN-14A-01D A41589 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41589	SRX590852	"Specific Capture analysis of normal sample TARGET-20-PASAUN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASAUN-14A-01D A41589 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41589_1_lane_dupsFlagged.bam	SRR1379859	@dbgap@:reads/SRP012000/SRS634738/SRX590852/SRR1379859/SRR1379859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAUN-09A-01D_TARGET-20-PASAUN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASAUN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAUN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUN-14A-01D	DNA	EFO	SRS634738	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAUN-14A-01D A41589 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41589	SRX590852	"Specific Capture analysis of normal sample TARGET-20-PASAUN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASAUN-14A-01D A41589 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41589_1_lane_dupsFlagged.bam	SRR1379859	@dbgap@:reads/SRP012000/SRS634738/SRX590852/SRR1379859/SRR1379859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAUN-09A-01D_TARGET-20-PASAUN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-03A-02D	DNA	EFO	SRS635631	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAUT-03A-02D A41948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41948	SRX593451	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAUT-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASAUT-03A-02D A41948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41948_1_lane_dupsFlagged.bam	SRR1385871	@dbgap@:reads/SRP012000/SRS635631/SRX593451/SRR1385871/SRR1385871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASAUT-03A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASAUT-03A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-03A-02D	DNA	EFO	SRS635631	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAUT-03A-02D A41948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41948	SRX593451	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAUT-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASAUT-03A-02D A41948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41948_1_lane_dupsFlagged.bam	SRR1385871	@dbgap@:reads/SRP012000/SRS635631/SRX593451/SRR1385871/SRR1385871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAUT-03A-02D_TARGET-20-PASAUT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-03A-02D	DNA	EFO	SRS635631	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAUT-03A-02D A41948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41948	SRX593451	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAUT-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASAUT-03A-02D A41948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41948_1_lane_dupsFlagged.bam	SRR1385871	@dbgap@:reads/SRP012000/SRS635631/SRX593451/SRR1385871/SRR1385871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAUT-03A-02D_TARGET-20-PASAUT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-14A-01D	DNA	EFO	SRS489709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAUT-14A-01D A42865 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42865	SRX597896	"Specific Capture analysis of normal sample TARGET-20-PASAUT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASAUT-14A-01D A42865 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42865_1_lane_dupsFlagged.bam	SRR1395195	@dbgap@:reads/SRP012000/SRS489709/SRX597896/SRR1395195/SRR1395195.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASAUT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASAUT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-14A-01D	DNA	EFO	SRS489709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAUT-14A-01D A42865 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42865	SRX597896	"Specific Capture analysis of normal sample TARGET-20-PASAUT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASAUT-14A-01D A42865 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42865_1_lane_dupsFlagged.bam	SRR1395195	@dbgap@:reads/SRP012000/SRS489709/SRX597896/SRR1395195/SRR1395195.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAUT-03A-02D_TARGET-20-PASAUT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASAUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAUT-14A-01D	DNA	EFO	SRS489709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAUT-14A-01D A42865 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42865	SRX597896	"Specific Capture analysis of normal sample TARGET-20-PASAUT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASAUT-14A-01D A42865 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42865_1_lane_dupsFlagged.bam	SRR1395195	@dbgap@:reads/SRP012000/SRS489709/SRX597896/SRR1395195/SRR1395195.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAUT-03A-02D_TARGET-20-PASAUT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASAWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAWH-09A-01D	DNA	EFO	SRS635572	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAWH-09A-01D A41940 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41940	SRX593390	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAWH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASAWH-09A-01D A41940 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41940_1_lane_dupsFlagged.bam	SRR1385924	@dbgap@:reads/SRP012000/SRS635572/SRX593390/SRR1385924/SRR1385924.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASAWH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASAWH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASAXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAXB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAXB-09A-01D	DNA	EFO	SRS635604	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAXB-09A-01D A41941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41941	SRX593424	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAXB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASAXB-09A-01D A41941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41941_1_lane_dupsFlagged.bam	SRR1385898	@dbgap@:reads/SRP012000/SRS635604/SRX593424/SRR1385898/SRR1385898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASAXB-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASAXB-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASAXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAXB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAXB-09A-01D	DNA	EFO	SRS635604	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAXB-09A-01D A41941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41941	SRX593424	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAXB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASAXB-09A-01D A41941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41941_1_lane_dupsFlagged.bam	SRR1385898	@dbgap@:reads/SRP012000/SRS635604/SRX593424/SRR1385898/SRR1385898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAXB-09A-01D_TARGET-20-PASAXB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASAXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAXB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAXB-09A-01D	DNA	EFO	SRS635604	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAXB-09A-01D A41941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41941	SRX593424	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAXB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASAXB-09A-01D A41941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41941_1_lane_dupsFlagged.bam	SRR1385898	@dbgap@:reads/SRP012000/SRS635604/SRX593424/SRR1385898/SRR1385898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAXB-09A-01D_TARGET-20-PASAXB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASAXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAXB-14A-01D	DNA	EFO	SRS637412	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAXB-14A-01D A42807 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42807	SRX597822	"Specific Capture analysis of normal sample TARGET-20-PASAXB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASAXB-14A-01D A42807 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42807_1_lane_dupsFlagged.bam	SRR1395083	@dbgap@:reads/SRP012000/SRS637412/SRX597822/SRR1395083/SRR1395083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASAXB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASAXB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASAXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAXB-14A-01D	DNA	EFO	SRS637412	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAXB-14A-01D A42807 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42807	SRX597822	"Specific Capture analysis of normal sample TARGET-20-PASAXB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASAXB-14A-01D A42807 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42807_1_lane_dupsFlagged.bam	SRR1395083	@dbgap@:reads/SRP012000/SRS637412/SRX597822/SRR1395083/SRR1395083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAXB-09A-01D_TARGET-20-PASAXB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASAXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAXB-14A-01D	DNA	EFO	SRS637412	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAXB-14A-01D A42807 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42807	SRX597822	"Specific Capture analysis of normal sample TARGET-20-PASAXB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASAXB-14A-01D A42807 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42807_1_lane_dupsFlagged.bam	SRR1395083	@dbgap@:reads/SRP012000/SRS637412/SRX597822/SRR1395083/SRR1395083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAXB-09A-01D_TARGET-20-PASAXB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASAYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAYA-09A-01D	DNA	EFO	SRS635488	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAYA-09A-01D A41774 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41774	SRX593210	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAYA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASAYA-09A-01D A41774 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41774_1_lane_dupsFlagged.bam	SRR1385598	@dbgap@:reads/SRP012000/SRS635488/SRX593210/SRR1385598/SRR1385598.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASAYA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASAYA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASAYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAYA-09A-01D	DNA	EFO	SRS635488	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAYA-09A-01D A41774 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41774	SRX593210	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAYA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASAYA-09A-01D A41774 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41774_1_lane_dupsFlagged.bam	SRR1385598	@dbgap@:reads/SRP012000/SRS635488/SRX593210/SRR1385598/SRR1385598.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAYA-09A-01D_TARGET-20-PASAYA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASAYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAYA-09A-01D	DNA	EFO	SRS635488	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAYA-09A-01D A41774 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41774	SRX593210	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASAYA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASAYA-09A-01D A41774 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41774_1_lane_dupsFlagged.bam	SRR1385598	@dbgap@:reads/SRP012000/SRS635488/SRX593210/SRR1385598/SRR1385598.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAYA-09A-01D_TARGET-20-PASAYA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASAYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAYA-14A-01D	DNA	EFO	SRS634740	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAYA-14A-01D A41590 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41590	SRX590853	"Specific Capture analysis of normal sample TARGET-20-PASAYA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASAYA-14A-01D A41590 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41590_1_lane_dupsFlagged.bam	SRR1379874	@dbgap@:reads/SRP012000/SRS634740/SRX590853/SRR1379874/SRR1379874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASAYA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASAYA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASAYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAYA-14A-01D	DNA	EFO	SRS634740	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAYA-14A-01D A41590 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41590	SRX590853	"Specific Capture analysis of normal sample TARGET-20-PASAYA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASAYA-14A-01D A41590 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41590_1_lane_dupsFlagged.bam	SRR1379874	@dbgap@:reads/SRP012000/SRS634740/SRX590853/SRR1379874/SRR1379874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAYA-09A-01D_TARGET-20-PASAYA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASAYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASAYA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAYA-14A-01D	DNA	EFO	SRS634740	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASAYA-14A-01D A41590 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41590	SRX590853	"Specific Capture analysis of normal sample TARGET-20-PASAYA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASAYA-14A-01D A41590 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41590_1_lane_dupsFlagged.bam	SRR1379874	@dbgap@:reads/SRP012000/SRS634740/SRX590853/SRR1379874/SRR1379874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASAYA-09A-01D_TARGET-20-PASAYA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBAX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBAX-03A-01D	DNA	EFO	SRS633673	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBAX-03A-01D A33414 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33414	SRX587967	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBAX-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASBAX-03A-01D A33414 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33414_1_lane_dupsFlagged.bam	SRR1373812	@dbgap@:reads/SRP012000/SRS633673/SRX587967/SRR1373812/SRR1373812.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBAX-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBAX-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASBAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBAX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBAX-03A-01D	DNA	EFO	SRS633673	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBAX-03A-01D A33414 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33414	SRX587967	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBAX-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASBAX-03A-01D A33414 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33414_1_lane_dupsFlagged.bam	SRR1373812	@dbgap@:reads/SRP012000/SRS633673/SRX587967/SRR1373812/SRR1373812.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBAX-03A-01D_TARGET-20-PASBAX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBAX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBAX-03A-01D	DNA	EFO	SRS633673	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBAX-03A-01D A33414 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33414	SRX587967	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBAX-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASBAX-03A-01D A33414 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33414_1_lane_dupsFlagged.bam	SRR1373812	@dbgap@:reads/SRP012000/SRS633673/SRX587967/SRR1373812/SRR1373812.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBAX-03A-01D_TARGET-20-PASBAX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBAX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBAX-14A-01D	DNA	EFO	SRS634685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBAX-14A-01D A41591 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41591	SRX590783	"Specific Capture analysis of normal sample TARGET-20-PASBAX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBAX-14A-01D A41591 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41591_1_lane_dupsFlagged.bam	SRR1379873	@dbgap@:reads/SRP012000/SRS634685/SRX590783/SRR1379873/SRR1379873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBAX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBAX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASBAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBAX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBAX-14A-01D	DNA	EFO	SRS634685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBAX-14A-01D A41591 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41591	SRX590783	"Specific Capture analysis of normal sample TARGET-20-PASBAX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBAX-14A-01D A41591 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41591_1_lane_dupsFlagged.bam	SRR1379873	@dbgap@:reads/SRP012000/SRS634685/SRX590783/SRR1379873/SRR1379873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBAX-03A-01D_TARGET-20-PASBAX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBAX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBAX-14A-01D	DNA	EFO	SRS634685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBAX-14A-01D A41591 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41591	SRX590783	"Specific Capture analysis of normal sample TARGET-20-PASBAX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBAX-14A-01D A41591 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41591_1_lane_dupsFlagged.bam	SRR1379873	@dbgap@:reads/SRP012000/SRS634685/SRX590783/SRR1379873/SRR1379873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBAX-03A-01D_TARGET-20-PASBAX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-01D	DNA	EFO	SRS637355	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBBE-04A-01D A42210 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42210	SRX597759	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBBE-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASBBE-04A-01D A42210 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42210_1_lane_dupsFlagged.bam	SRR1394965	@dbgap@:reads/SRP012000/SRS637355/SRX597759/SRR1394965/SRR1394965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBBE-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBBE-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-01D	DNA	EFO	SRS637355	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBBE-04A-01D A42210 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42210	SRX597759	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBBE-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASBBE-04A-01D A42210 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42210_1_lane_dupsFlagged.bam	SRR1394965	@dbgap@:reads/SRP012000/SRS637355/SRX597759/SRR1394965/SRR1394965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBBE-04A-01D_TARGET-20-PASBBE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-01D	DNA	EFO	SRS637355	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBBE-04A-01D A42210 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42210	SRX597759	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBBE-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASBBE-04A-01D A42210 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42210_1_lane_dupsFlagged.bam	SRR1394965	@dbgap@:reads/SRP012000/SRS637355/SRX597759/SRR1394965/SRR1394965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBBE-04A-01D_TARGET-20-PASBBE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-02D	DNA	EFO	SRS628691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBBE-09A-02D A32241 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32241	SRX574384	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBBE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASBBE-09A-02D A32241 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32241_1_lane_dupsFlagged.bam	SRR1344843	@dbgap@:reads/SRP012000/SRS628691/SRX574384/SRR1344843/SRR1344843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBBE-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBBE-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-02D	DNA	EFO	SRS628691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBBE-09A-02D A32241 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32241	SRX574384	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBBE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASBBE-09A-02D A32241 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32241_1_lane_dupsFlagged.bam	SRR1344843	@dbgap@:reads/SRP012000/SRS628691/SRX574384/SRR1344843/SRR1344843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBBE-09A-02D_TARGET-20-PASBBE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-09A-02D	DNA	EFO	SRS628691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBBE-09A-02D A32241 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32241	SRX574384	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBBE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASBBE-09A-02D A32241 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32241_1_lane_dupsFlagged.bam	SRR1344843	@dbgap@:reads/SRP012000/SRS628691/SRX574384/SRR1344843/SRR1344843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBBE-09A-02D_TARGET-20-PASBBE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBBE-14A-01D A42947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42947	SRX597894	"Specific Capture analysis of normal sample TARGET-20-PASBBE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASBBE-14A-01D A42947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42947_1_lane_dupsFlagged.bam	SRR1395209	@dbgap@:reads/SRP012000/SRS270758/SRX597894/SRR1395209/SRR1395209.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBBE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBBE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBBE-14A-01D A42947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42947	SRX597894	"Specific Capture analysis of normal sample TARGET-20-PASBBE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASBBE-14A-01D A42947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42947_1_lane_dupsFlagged.bam	SRR1395209	@dbgap@:reads/SRP012000/SRS270758/SRX597894/SRR1395209/SRR1395209.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBBE-04A-01D_TARGET-20-PASBBE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBBE-14A-01D A42947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42947	SRX597894	"Specific Capture analysis of normal sample TARGET-20-PASBBE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASBBE-14A-01D A42947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42947_1_lane_dupsFlagged.bam	SRR1395209	@dbgap@:reads/SRP012000/SRS270758/SRX597894/SRR1395209/SRR1395209.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBBE-04A-01D_TARGET-20-PASBBE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBBE-14A-01D A42947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42947	SRX597894	"Specific Capture analysis of normal sample TARGET-20-PASBBE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASBBE-14A-01D A42947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42947_1_lane_dupsFlagged.bam	SRR1395209	@dbgap@:reads/SRP012000/SRS270758/SRX597894/SRR1395209/SRR1395209.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBBE-09A-02D_TARGET-20-PASBBE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-14A-01D	DNA	EFO	SRS270758	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBBE-14A-01D A42947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42947	SRX597894	"Specific Capture analysis of normal sample TARGET-20-PASBBE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASBBE-14A-01D A42947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42947_1_lane_dupsFlagged.bam	SRR1395209	@dbgap@:reads/SRP012000/SRS270758/SRX597894/SRR1395209/SRR1395209.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBBE-09A-02D_TARGET-20-PASBBE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBBF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBBF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBF-03A-01D	DNA	EFO	SRS635590	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBBF-03A-01D A41946 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41946	SRX593409	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBBF-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASBBF-03A-01D A41946 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41946_1_lane_dupsFlagged.bam	SRR1385870	@dbgap@:reads/SRP012000/SRS635590/SRX593409/SRR1385870/SRR1385870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBBF-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBBF-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASBCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBCT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBCT-09A-01D	DNA	EFO	SRS635504	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBCT-09A-01D A41776 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41776	SRX593226	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBCT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBCT-09A-01D A41776 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41776_1_lane_dupsFlagged.bam	SRR1385636	@dbgap@:reads/SRP012000/SRS635504/SRX593226/SRR1385636/SRR1385636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBCT-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBCT-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASBCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBCT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBCT-09A-01D	DNA	EFO	SRS635504	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBCT-09A-01D A41776 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41776	SRX593226	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBCT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBCT-09A-01D A41776 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41776_1_lane_dupsFlagged.bam	SRR1385636	@dbgap@:reads/SRP012000/SRS635504/SRX593226/SRR1385636/SRR1385636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBCT-09A-01D_TARGET-20-PASBCT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBCT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBCT-09A-01D	DNA	EFO	SRS635504	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBCT-09A-01D A41776 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41776	SRX593226	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBCT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBCT-09A-01D A41776 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41776_1_lane_dupsFlagged.bam	SRR1385636	@dbgap@:reads/SRP012000/SRS635504/SRX593226/SRR1385636/SRR1385636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBCT-09A-01D_TARGET-20-PASBCT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBCT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBCT-14A-01D	DNA	EFO	SRS635959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBCT-14A-01D A42488 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42488	SRX593919	"Specific Capture analysis of normal sample TARGET-20-PASBCT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASBCT-14A-01D A42488 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42488_1_lane_dupsFlagged.bam	SRR1386332	@dbgap@:reads/SRP012000/SRS635959/SRX593919/SRR1386332/SRR1386332.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBCT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBCT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASBCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBCT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBCT-14A-01D	DNA	EFO	SRS635959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBCT-14A-01D A42488 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42488	SRX593919	"Specific Capture analysis of normal sample TARGET-20-PASBCT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASBCT-14A-01D A42488 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42488_1_lane_dupsFlagged.bam	SRR1386332	@dbgap@:reads/SRP012000/SRS635959/SRX593919/SRR1386332/SRR1386332.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBCT-09A-01D_TARGET-20-PASBCT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBCT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBCT-14A-01D	DNA	EFO	SRS635959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBCT-14A-01D A42488 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42488	SRX593919	"Specific Capture analysis of normal sample TARGET-20-PASBCT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASBCT-14A-01D A42488 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42488_1_lane_dupsFlagged.bam	SRR1386332	@dbgap@:reads/SRP012000/SRS635959/SRX593919/SRR1386332/SRR1386332.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBCT-09A-01D_TARGET-20-PASBCT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBDC-09A-02D	DNA	EFO	SRS628310	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBDC-09A-02D A31216 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31216	SRX573379	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBDC-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASBDC-09A-02D A31216 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31216_1_lane_dupsFlagged.bam	SRR1342662	@dbgap@:reads/SRP012000/SRS628310/SRX573379/SRR1342662/SRR1342662.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBDC-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBDC-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASBDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBDC-09A-02D	DNA	EFO	SRS628310	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBDC-09A-02D A31216 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31216	SRX573379	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBDC-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASBDC-09A-02D A31216 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31216_1_lane_dupsFlagged.bam	SRR1342662	@dbgap@:reads/SRP012000/SRS628310/SRX573379/SRR1342662/SRR1342662.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBDC-09A-02D_TARGET-20-PASBDC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBDC-09A-02D	DNA	EFO	SRS628310	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBDC-09A-02D A31216 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31216	SRX573379	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBDC-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASBDC-09A-02D A31216 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31216_1_lane_dupsFlagged.bam	SRR1342662	@dbgap@:reads/SRP012000/SRS628310/SRX573379/SRR1342662/SRR1342662.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBDC-09A-02D_TARGET-20-PASBDC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBDC-14A-01D	DNA	EFO	SRS636032	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBDC-14A-01D A42570 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42570	SRX594009	"Specific Capture analysis of normal sample TARGET-20-PASBDC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASBDC-14A-01D A42570 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42570_1_lane_dupsFlagged.bam	SRR1386487	@dbgap@:reads/SRP012000/SRS636032/SRX594009/SRR1386487/SRR1386487.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBDC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBDC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASBDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBDC-14A-01D	DNA	EFO	SRS636032	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBDC-14A-01D A42570 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42570	SRX594009	"Specific Capture analysis of normal sample TARGET-20-PASBDC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASBDC-14A-01D A42570 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42570_1_lane_dupsFlagged.bam	SRR1386487	@dbgap@:reads/SRP012000/SRS636032/SRX594009/SRR1386487/SRR1386487.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBDC-09A-02D_TARGET-20-PASBDC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBDC-14A-01D	DNA	EFO	SRS636032	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBDC-14A-01D A42570 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42570	SRX594009	"Specific Capture analysis of normal sample TARGET-20-PASBDC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASBDC-14A-01D A42570 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42570_1_lane_dupsFlagged.bam	SRR1386487	@dbgap@:reads/SRP012000/SRS636032/SRX594009/SRR1386487/SRR1386487.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBDC-09A-02D_TARGET-20-PASBDC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBGZ-09A-01D	DNA	EFO	SRS635500	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBGZ-09A-01D A41777 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41777	SRX593220	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBGZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBGZ-09A-01D A41777 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41777_1_lane_dupsFlagged.bam	SRR1385599	@dbgap@:reads/SRP012000/SRS635500/SRX593220/SRR1385599/SRR1385599.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBGZ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBGZ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASBGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBGZ-09A-01D	DNA	EFO	SRS635500	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBGZ-09A-01D A41777 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41777	SRX593220	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBGZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBGZ-09A-01D A41777 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41777_1_lane_dupsFlagged.bam	SRR1385599	@dbgap@:reads/SRP012000/SRS635500/SRX593220/SRR1385599/SRR1385599.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBGZ-09A-01D_TARGET-20-PASBGZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBGZ-09A-01D	DNA	EFO	SRS635500	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBGZ-09A-01D A41777 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41777	SRX593220	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBGZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBGZ-09A-01D A41777 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41777_1_lane_dupsFlagged.bam	SRR1385599	@dbgap@:reads/SRP012000/SRS635500/SRX593220/SRR1385599/SRR1385599.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBGZ-09A-01D_TARGET-20-PASBGZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBGZ-14A-01D	DNA	EFO	SRS634694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBGZ-14A-01D A41595 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41595	SRX590794	"Specific Capture analysis of normal sample TARGET-20-PASBGZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBGZ-14A-01D A41595 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41595_1_lane_dupsFlagged.bam	SRR1379861	@dbgap@:reads/SRP012000/SRS634694/SRX590794/SRR1379861/SRR1379861.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBGZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBGZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASBGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBGZ-14A-01D	DNA	EFO	SRS634694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBGZ-14A-01D A41595 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41595	SRX590794	"Specific Capture analysis of normal sample TARGET-20-PASBGZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBGZ-14A-01D A41595 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41595_1_lane_dupsFlagged.bam	SRR1379861	@dbgap@:reads/SRP012000/SRS634694/SRX590794/SRR1379861/SRR1379861.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBGZ-09A-01D_TARGET-20-PASBGZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBGZ-14A-01D	DNA	EFO	SRS634694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBGZ-14A-01D A41595 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41595	SRX590794	"Specific Capture analysis of normal sample TARGET-20-PASBGZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBGZ-14A-01D A41595 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41595_1_lane_dupsFlagged.bam	SRR1379861	@dbgap@:reads/SRP012000/SRS634694/SRX590794/SRR1379861/SRR1379861.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBGZ-09A-01D_TARGET-20-PASBGZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-02D	DNA	EFO	SRS628762	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBHI-09A-02D A32242 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32242	SRX574458	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBHI-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASBHI-09A-02D A32242 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32242_1_lane_dupsFlagged.bam	SRR1344849	@dbgap@:reads/SRP012000/SRS628762/SRX574458/SRR1344849/SRR1344849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBHI-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBHI-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-02D	DNA	EFO	SRS628762	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBHI-09A-02D A32242 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32242	SRX574458	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBHI-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASBHI-09A-02D A32242 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32242_1_lane_dupsFlagged.bam	SRR1344849	@dbgap@:reads/SRP012000/SRS628762/SRX574458/SRR1344849/SRR1344849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBHI-09A-02D_TARGET-20-PASBHI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-02D	DNA	EFO	SRS628762	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBHI-09A-02D A32242 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32242	SRX574458	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBHI-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASBHI-09A-02D A32242 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32242_1_lane_dupsFlagged.bam	SRR1344849	@dbgap@:reads/SRP012000/SRS628762/SRX574458/SRR1344849/SRR1344849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBHI-09A-02D_TARGET-20-PASBHI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-14A-01D	DNA	EFO	SRS301118	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBHI-14A-01D A41594 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41594	SRX590859	"Specific Capture analysis of normal sample TARGET-20-PASBHI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBHI-14A-01D A41594 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41594_1_lane_dupsFlagged.bam	SRR1379832	@dbgap@:reads/SRP012000/SRS301118/SRX590859/SRR1379832/SRR1379832.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBHI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBHI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-14A-01D	DNA	EFO	SRS301118	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBHI-14A-01D A41594 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41594	SRX590859	"Specific Capture analysis of normal sample TARGET-20-PASBHI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBHI-14A-01D A41594 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41594_1_lane_dupsFlagged.bam	SRR1379832	@dbgap@:reads/SRP012000/SRS301118/SRX590859/SRR1379832/SRR1379832.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBHI-09A-02D_TARGET-20-PASBHI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-14A-01D	DNA	EFO	SRS301118	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBHI-14A-01D A41594 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41594	SRX590859	"Specific Capture analysis of normal sample TARGET-20-PASBHI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBHI-14A-01D A41594 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41594_1_lane_dupsFlagged.bam	SRR1379832	@dbgap@:reads/SRP012000/SRS301118/SRX590859/SRR1379832/SRR1379832.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBHI-09A-02D_TARGET-20-PASBHI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBII-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBII-09A-01D	DNA	EFO	SRS635517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBII-09A-01D A41736 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41736	SRX593238	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBII-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBII-09A-01D A41736 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41736_1_lane_dupsFlagged.bam	SRR1385584	@dbgap@:reads/SRP012000/SRS635517/SRX593238/SRR1385584/SRR1385584.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBII-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBII-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASBII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBII-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBII-09A-01D	DNA	EFO	SRS635517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBII-09A-01D A41736 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41736	SRX593238	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBII-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBII-09A-01D A41736 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41736_1_lane_dupsFlagged.bam	SRR1385584	@dbgap@:reads/SRP012000/SRS635517/SRX593238/SRR1385584/SRR1385584.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBII-09A-01D_TARGET-20-PASBII-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBII-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBII-09A-01D	DNA	EFO	SRS635517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBII-09A-01D A41736 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41736	SRX593238	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBII-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBII-09A-01D A41736 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41736_1_lane_dupsFlagged.bam	SRR1385584	@dbgap@:reads/SRP012000/SRS635517/SRX593238/SRR1385584/SRR1385584.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBII-09A-01D_TARGET-20-PASBII-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBII-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBII-14A-01D	DNA	EFO	SRS635940	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBII-14A-01D A42491 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42491	SRX593901	"Specific Capture analysis of normal sample TARGET-20-PASBII-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASBII-14A-01D A42491 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42491_1_lane_dupsFlagged.bam	SRR1386377	@dbgap@:reads/SRP012000/SRS635940/SRX593901/SRR1386377/SRR1386377.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBII-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBII-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASBII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBII-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBII-14A-01D	DNA	EFO	SRS635940	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBII-14A-01D A42491 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42491	SRX593901	"Specific Capture analysis of normal sample TARGET-20-PASBII-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASBII-14A-01D A42491 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42491_1_lane_dupsFlagged.bam	SRR1386377	@dbgap@:reads/SRP012000/SRS635940/SRX593901/SRR1386377/SRR1386377.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBII-09A-01D_TARGET-20-PASBII-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBII-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBII-14A-01D	DNA	EFO	SRS635940	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBII-14A-01D A42491 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42491	SRX593901	"Specific Capture analysis of normal sample TARGET-20-PASBII-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASBII-14A-01D A42491 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42491_1_lane_dupsFlagged.bam	SRR1386377	@dbgap@:reads/SRP012000/SRS635940/SRX593901/SRR1386377/SRR1386377.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBII-09A-01D_TARGET-20-PASBII-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBNA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBNA-03A-01D	DNA	EFO	SRS633617	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBNA-03A-01D A33415 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33415	SRX587911	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBNA-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASBNA-03A-01D A33415 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33415_1_lane_dupsFlagged.bam	SRR1373773	@dbgap@:reads/SRP012000/SRS633617/SRX587911/SRR1373773/SRR1373773.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBNA-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBNA-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASBNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBNA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBNA-03A-01D	DNA	EFO	SRS633617	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBNA-03A-01D A33415 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33415	SRX587911	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBNA-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASBNA-03A-01D A33415 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33415_1_lane_dupsFlagged.bam	SRR1373773	@dbgap@:reads/SRP012000/SRS633617/SRX587911/SRR1373773/SRR1373773.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBNA-03A-01D_TARGET-20-PASBNA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBNA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBNA-03A-01D	DNA	EFO	SRS633617	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBNA-03A-01D A33415 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33415	SRX587911	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBNA-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASBNA-03A-01D A33415 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33415_1_lane_dupsFlagged.bam	SRR1373773	@dbgap@:reads/SRP012000/SRS633617/SRX587911/SRR1373773/SRR1373773.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBNA-03A-01D_TARGET-20-PASBNA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBNA-04A-01D	DNA	EFO	SRS637306	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBNA-04A-01D A42240 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42240	SRX597670	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBNA-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASBNA-04A-01D A42240 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42240_1_lane_dupsFlagged.bam	SRR1395017	@dbgap@:reads/SRP012000/SRS637306/SRX597670/SRR1395017/SRR1395017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBNA-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBNA-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASBNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBNA-04A-01D	DNA	EFO	SRS637306	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBNA-04A-01D A42240 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42240	SRX597670	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBNA-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASBNA-04A-01D A42240 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42240_1_lane_dupsFlagged.bam	SRR1395017	@dbgap@:reads/SRP012000/SRS637306/SRX597670/SRR1395017/SRR1395017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBNA-04A-01D_TARGET-20-PASBNA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBNA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBNA-04A-01D	DNA	EFO	SRS637306	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBNA-04A-01D A42240 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42240	SRX597670	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBNA-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASBNA-04A-01D A42240 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42240_1_lane_dupsFlagged.bam	SRR1395017	@dbgap@:reads/SRP012000/SRS637306/SRX597670/SRR1395017/SRR1395017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBNA-04A-01D_TARGET-20-PASBNA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBNA-14A-01D	DNA	EFO	SRS634684	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBNA-14A-01D A41596 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41596	SRX590784	"Specific Capture analysis of normal sample TARGET-20-PASBNA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBNA-14A-01D A41596 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41596_1_lane_dupsFlagged.bam	SRR1379860	@dbgap@:reads/SRP012000/SRS634684/SRX590784/SRR1379860/SRR1379860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBNA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBNA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASBNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBNA-14A-01D	DNA	EFO	SRS634684	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBNA-14A-01D A41596 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41596	SRX590784	"Specific Capture analysis of normal sample TARGET-20-PASBNA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBNA-14A-01D A41596 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41596_1_lane_dupsFlagged.bam	SRR1379860	@dbgap@:reads/SRP012000/SRS634684/SRX590784/SRR1379860/SRR1379860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBNA-03A-01D_TARGET-20-PASBNA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBNA-14A-01D	DNA	EFO	SRS634684	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBNA-14A-01D A41596 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41596	SRX590784	"Specific Capture analysis of normal sample TARGET-20-PASBNA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBNA-14A-01D A41596 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41596_1_lane_dupsFlagged.bam	SRR1379860	@dbgap@:reads/SRP012000/SRS634684/SRX590784/SRR1379860/SRR1379860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBNA-03A-01D_TARGET-20-PASBNA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBNA-14A-01D	DNA	EFO	SRS634684	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBNA-14A-01D A41596 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41596	SRX590784	"Specific Capture analysis of normal sample TARGET-20-PASBNA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBNA-14A-01D A41596 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41596_1_lane_dupsFlagged.bam	SRR1379860	@dbgap@:reads/SRP012000/SRS634684/SRX590784/SRR1379860/SRR1379860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBNA-04A-01D_TARGET-20-PASBNA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBNA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBNA-14A-01D	DNA	EFO	SRS634684	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBNA-14A-01D A41596 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41596	SRX590784	"Specific Capture analysis of normal sample TARGET-20-PASBNA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBNA-14A-01D A41596 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41596_1_lane_dupsFlagged.bam	SRR1379860	@dbgap@:reads/SRP012000/SRS634684/SRX590784/SRR1379860/SRR1379860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBNA-04A-01D_TARGET-20-PASBNA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-01D	DNA	EFO	SRS118053	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPK-09A-01D A41428 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41428	SRX588540	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBPK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBPK-09A-01D A41428 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41428_1_lane_dupsFlagged.bam	SRR1374915	@dbgap@:reads/SRP012000/SRS118053/SRX588540/SRR1374915/SRR1374915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBPK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBPK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-01D	DNA	EFO	SRS118053	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPK-09A-01D A41428 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41428	SRX588540	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBPK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBPK-09A-01D A41428 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41428_1_lane_dupsFlagged.bam	SRR1374915	@dbgap@:reads/SRP012000/SRS118053/SRX588540/SRR1374915/SRR1374915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBPK-09A-01D_TARGET-20-PASBPK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-01D	DNA	EFO	SRS118053	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPK-09A-01D A41428 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41428	SRX588540	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBPK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBPK-09A-01D A41428 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41428_1_lane_dupsFlagged.bam	SRR1374915	@dbgap@:reads/SRP012000/SRS118053/SRX588540/SRR1374915/SRR1374915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBPK-09A-01D_TARGET-20-PASBPK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-14A-01D	DNA	EFO	SRS118054	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPK-14A-01D A42638 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42638	SRX593995	"Specific Capture analysis of normal sample TARGET-20-PASBPK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASBPK-14A-01D A42638 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42638_1_lane_dupsFlagged.bam	SRR1386493	@dbgap@:reads/SRP012000/SRS118054/SRX593995/SRR1386493/SRR1386493.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBPK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBPK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-14A-01D	DNA	EFO	SRS118054	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPK-14A-01D A42638 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42638	SRX593995	"Specific Capture analysis of normal sample TARGET-20-PASBPK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASBPK-14A-01D A42638 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42638_1_lane_dupsFlagged.bam	SRR1386493	@dbgap@:reads/SRP012000/SRS118054/SRX593995/SRR1386493/SRR1386493.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBPK-09A-01D_TARGET-20-PASBPK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-14A-01D	DNA	EFO	SRS118054	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPK-14A-01D A42638 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42638	SRX593995	"Specific Capture analysis of normal sample TARGET-20-PASBPK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASBPK-14A-01D A42638 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42638_1_lane_dupsFlagged.bam	SRR1386493	@dbgap@:reads/SRP012000/SRS118054/SRX593995/SRR1386493/SRR1386493.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBPK-09A-01D_TARGET-20-PASBPK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPW-09A-01D	DNA	EFO	SRS628298	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPW-09A-01D A31254 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31254	SRX573362	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBPW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASBPW-09A-01D A31254 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31254_1_lane_dupsFlagged.bam	SRR1342621	@dbgap@:reads/SRP012000/SRS628298/SRX573362/SRR1342621/SRR1342621.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBPW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBPW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPW-09A-01D	DNA	EFO	SRS628298	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPW-09A-01D A31254 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31254	SRX573362	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBPW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASBPW-09A-01D A31254 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31254_1_lane_dupsFlagged.bam	SRR1342621	@dbgap@:reads/SRP012000/SRS628298/SRX573362/SRR1342621/SRR1342621.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBPW-09A-01D_TARGET-20-PASBPW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPW-09A-01D	DNA	EFO	SRS628298	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPW-09A-01D A31254 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31254	SRX573362	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBPW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASBPW-09A-01D A31254 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31254_1_lane_dupsFlagged.bam	SRR1342621	@dbgap@:reads/SRP012000/SRS628298/SRX573362/SRR1342621/SRR1342621.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBPW-09A-01D_TARGET-20-PASBPW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPW-14A-01D	DNA	EFO	SRS634731	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPW-14A-01D A41598 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41598	SRX590841	"Specific Capture analysis of normal sample TARGET-20-PASBPW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBPW-14A-01D A41598 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41598_1_lane_dupsFlagged.bam	SRR1379817	@dbgap@:reads/SRP012000/SRS634731/SRX590841/SRR1379817/SRR1379817.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBPW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBPW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPW-14A-01D	DNA	EFO	SRS634731	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPW-14A-01D A41598 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41598	SRX590841	"Specific Capture analysis of normal sample TARGET-20-PASBPW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBPW-14A-01D A41598 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41598_1_lane_dupsFlagged.bam	SRR1379817	@dbgap@:reads/SRP012000/SRS634731/SRX590841/SRR1379817/SRR1379817.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBPW-09A-01D_TARGET-20-PASBPW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPW-14A-01D	DNA	EFO	SRS634731	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPW-14A-01D A41598 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41598	SRX590841	"Specific Capture analysis of normal sample TARGET-20-PASBPW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBPW-14A-01D A41598 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41598_1_lane_dupsFlagged.bam	SRR1379817	@dbgap@:reads/SRP012000/SRS634731/SRX590841/SRR1379817/SRR1379817.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBPW-09A-01D_TARGET-20-PASBPW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBSB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBSB-03A-01D	DNA	EFO	SRS628761	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBSB-03A-01D A32243 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32243	SRX574457	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBSB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASBSB-03A-01D A32243 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32243_1_lane_dupsFlagged.bam	SRR1344857	@dbgap@:reads/SRP012000/SRS628761/SRX574457/SRR1344857/SRR1344857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBSB-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBSB-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASBSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBSB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBSB-03A-01D	DNA	EFO	SRS628761	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBSB-03A-01D A32243 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32243	SRX574457	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBSB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASBSB-03A-01D A32243 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32243_1_lane_dupsFlagged.bam	SRR1344857	@dbgap@:reads/SRP012000/SRS628761/SRX574457/SRR1344857/SRR1344857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBSB-03A-01D_TARGET-20-PASBSB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBSB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBSB-03A-01D	DNA	EFO	SRS628761	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBSB-03A-01D A32243 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32243	SRX574457	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBSB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASBSB-03A-01D A32243 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32243_1_lane_dupsFlagged.bam	SRR1344857	@dbgap@:reads/SRP012000/SRS628761/SRX574457/SRR1344857/SRR1344857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBSB-03A-01D_TARGET-20-PASBSB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBSB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBSB-14A-01D	DNA	EFO	SRS634743	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBSB-14A-01D A41597 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41597	SRX590856	"Specific Capture analysis of normal sample TARGET-20-PASBSB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBSB-14A-01D A41597 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41597_1_lane_dupsFlagged.bam	SRR1379796	@dbgap@:reads/SRP012000/SRS634743/SRX590856/SRR1379796/SRR1379796.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBSB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBSB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASBSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBSB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBSB-14A-01D	DNA	EFO	SRS634743	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBSB-14A-01D A41597 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41597	SRX590856	"Specific Capture analysis of normal sample TARGET-20-PASBSB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBSB-14A-01D A41597 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41597_1_lane_dupsFlagged.bam	SRR1379796	@dbgap@:reads/SRP012000/SRS634743/SRX590856/SRR1379796/SRR1379796.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBSB-03A-01D_TARGET-20-PASBSB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBSB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBSB-14A-01D	DNA	EFO	SRS634743	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBSB-14A-01D A41597 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41597	SRX590856	"Specific Capture analysis of normal sample TARGET-20-PASBSB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBSB-14A-01D A41597 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41597_1_lane_dupsFlagged.bam	SRR1379796	@dbgap@:reads/SRP012000/SRS634743/SRX590856/SRR1379796/SRR1379796.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBSB-03A-01D_TARGET-20-PASBSB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBST-09A-01D	DNA	EFO	SRS633679	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBST-09A-01D A33413 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33413	SRX587973	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBST-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASBST-09A-01D A33413 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33413_1_lane_dupsFlagged.bam	SRR1373851	@dbgap@:reads/SRP012000/SRS633679/SRX587973/SRR1373851/SRR1373851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBST-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBST-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASBST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBST-09A-01D	DNA	EFO	SRS633679	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBST-09A-01D A33413 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33413	SRX587973	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBST-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASBST-09A-01D A33413 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33413_1_lane_dupsFlagged.bam	SRR1373851	@dbgap@:reads/SRP012000/SRS633679/SRX587973/SRR1373851/SRR1373851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBST-09A-01D_TARGET-20-PASBST-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBST-09A-01D	DNA	EFO	SRS633679	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBST-09A-01D A33413 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33413	SRX587973	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBST-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASBST-09A-01D A33413 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33413_1_lane_dupsFlagged.bam	SRR1373851	@dbgap@:reads/SRP012000/SRS633679/SRX587973/SRR1373851/SRR1373851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBST-09A-01D_TARGET-20-PASBST-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBST-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBST-14A-01D	DNA	EFO	SRS635896	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBST-14A-01D A42489 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42489	SRX593856	"Specific Capture analysis of normal sample TARGET-20-PASBST-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASBST-14A-01D A42489 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42489_1_lane_dupsFlagged.bam	SRR1386350	@dbgap@:reads/SRP012000/SRS635896/SRX593856/SRR1386350/SRR1386350.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBST-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBST-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASBST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBST-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBST-14A-01D	DNA	EFO	SRS635896	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBST-14A-01D A42489 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42489	SRX593856	"Specific Capture analysis of normal sample TARGET-20-PASBST-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASBST-14A-01D A42489 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42489_1_lane_dupsFlagged.bam	SRR1386350	@dbgap@:reads/SRP012000/SRS635896/SRX593856/SRR1386350/SRR1386350.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBST-09A-01D_TARGET-20-PASBST-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBST-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBST-14A-01D	DNA	EFO	SRS635896	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBST-14A-01D A42489 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42489	SRX593856	"Specific Capture analysis of normal sample TARGET-20-PASBST-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASBST-14A-01D A42489 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42489_1_lane_dupsFlagged.bam	SRR1386350	@dbgap@:reads/SRP012000/SRS635896/SRX593856/SRR1386350/SRR1386350.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBST-09A-01D_TARGET-20-PASBST-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBYL-09A-01D	DNA	EFO	SRS635433	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBYL-09A-01D A41775 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41775	SRX593155	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBYL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASBYL-09A-01D A41775 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41775_1_lane_dupsFlagged.bam	SRR1385579	@dbgap@:reads/SRP012000/SRS635433/SRX593155/SRR1385579/SRR1385579.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBYL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBYL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASBYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBYL-09A-01D	DNA	EFO	SRS635433	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBYL-09A-01D A41775 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41775	SRX593155	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBYL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASBYL-09A-01D A41775 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41775_1_lane_dupsFlagged.bam	SRR1385579	@dbgap@:reads/SRP012000/SRS635433/SRX593155/SRR1385579/SRR1385579.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBYL-09A-01D_TARGET-20-PASBYL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBYL-09A-01D	DNA	EFO	SRS635433	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBYL-09A-01D A41775 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41775	SRX593155	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASBYL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASBYL-09A-01D A41775 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41775_1_lane_dupsFlagged.bam	SRR1385579	@dbgap@:reads/SRP012000/SRS635433/SRX593155/SRR1385579/SRR1385579.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBYL-09A-01D_TARGET-20-PASBYL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASBYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBYL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBYL-14A-01D	DNA	EFO	SRS634741	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBYL-14A-01D A41601 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41601	SRX590855	"Specific Capture analysis of normal sample TARGET-20-PASBYL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBYL-14A-01D A41601 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41601_1_lane_dupsFlagged.bam	SRR1379882	@dbgap@:reads/SRP012000/SRS634741/SRX590855/SRR1379882/SRR1379882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASBYL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASBYL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASBYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBYL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBYL-14A-01D	DNA	EFO	SRS634741	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBYL-14A-01D A41601 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41601	SRX590855	"Specific Capture analysis of normal sample TARGET-20-PASBYL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBYL-14A-01D A41601 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41601_1_lane_dupsFlagged.bam	SRR1379882	@dbgap@:reads/SRP012000/SRS634741/SRX590855/SRR1379882/SRR1379882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBYL-09A-01D_TARGET-20-PASBYL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASBYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASBYL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBYL-14A-01D	DNA	EFO	SRS634741	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBYL-14A-01D A41601 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41601	SRX590855	"Specific Capture analysis of normal sample TARGET-20-PASBYL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASBYL-14A-01D A41601 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41601_1_lane_dupsFlagged.bam	SRR1379882	@dbgap@:reads/SRP012000/SRS634741/SRX590855/SRR1379882/SRR1379882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASBYL-09A-01D_TARGET-20-PASBYL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCAF-09A-01D	DNA	EFO	SRS635456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCAF-09A-01D A41778 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41778	SRX593178	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCAF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASCAF-09A-01D A41778 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41778_1_lane_dupsFlagged.bam	SRR1385659	@dbgap@:reads/SRP012000/SRS635456/SRX593178/SRR1385659/SRR1385659.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCAF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCAF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASCAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCAF-09A-01D	DNA	EFO	SRS635456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCAF-09A-01D A41778 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41778	SRX593178	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCAF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASCAF-09A-01D A41778 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41778_1_lane_dupsFlagged.bam	SRR1385659	@dbgap@:reads/SRP012000/SRS635456/SRX593178/SRR1385659/SRR1385659.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCAF-09A-01D_TARGET-20-PASCAF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCAF-09A-01D	DNA	EFO	SRS635456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCAF-09A-01D A41778 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41778	SRX593178	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCAF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASCAF-09A-01D A41778 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41778_1_lane_dupsFlagged.bam	SRR1385659	@dbgap@:reads/SRP012000/SRS635456/SRX593178/SRR1385659/SRR1385659.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCAF-09A-01D_TARGET-20-PASCAF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCAF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCAF-14A-01D	DNA	EFO	SRS635926	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCAF-14A-01D A42519 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42519	SRX593885	"Specific Capture analysis of normal sample TARGET-20-PASCAF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASCAF-14A-01D A42519 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42519_1_lane_dupsFlagged.bam	SRR1386400	@dbgap@:reads/SRP012000/SRS635926/SRX593885/SRR1386400/SRR1386400.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCAF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCAF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASCAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCAF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCAF-14A-01D	DNA	EFO	SRS635926	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCAF-14A-01D A42519 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42519	SRX593885	"Specific Capture analysis of normal sample TARGET-20-PASCAF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASCAF-14A-01D A42519 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42519_1_lane_dupsFlagged.bam	SRR1386400	@dbgap@:reads/SRP012000/SRS635926/SRX593885/SRR1386400/SRR1386400.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCAF-09A-01D_TARGET-20-PASCAF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCAF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCAF-14A-01D	DNA	EFO	SRS635926	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCAF-14A-01D A42519 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42519	SRX593885	"Specific Capture analysis of normal sample TARGET-20-PASCAF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASCAF-14A-01D A42519 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42519_1_lane_dupsFlagged.bam	SRR1386400	@dbgap@:reads/SRP012000/SRS635926/SRX593885/SRR1386400/SRR1386400.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCAF-09A-01D_TARGET-20-PASCAF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCBW-09A-01D	DNA	EFO	SRS633701	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCBW-09A-01D A33362 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33362	SRX587995	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCBW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASCBW-09A-01D A33362 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33362_1_lane_dupsFlagged.bam	SRR1373834	@dbgap@:reads/SRP012000/SRS633701/SRX587995/SRR1373834/SRR1373834.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCBW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCBW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASCBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCBW-09A-01D	DNA	EFO	SRS633701	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCBW-09A-01D A33362 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33362	SRX587995	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCBW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASCBW-09A-01D A33362 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33362_1_lane_dupsFlagged.bam	SRR1373834	@dbgap@:reads/SRP012000/SRS633701/SRX587995/SRR1373834/SRR1373834.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCBW-09A-01D_TARGET-20-PASCBW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCBW-09A-01D	DNA	EFO	SRS633701	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCBW-09A-01D A33362 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33362	SRX587995	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCBW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASCBW-09A-01D A33362 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33362_1_lane_dupsFlagged.bam	SRR1373834	@dbgap@:reads/SRP012000/SRS633701/SRX587995/SRR1373834/SRR1373834.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCBW-09A-01D_TARGET-20-PASCBW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCBW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCBW-14A-01D	DNA	EFO	SRS637409	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCBW-14A-01D A42857 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42857	SRX597818	"Specific Capture analysis of normal sample TARGET-20-PASCBW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASCBW-14A-01D A42857 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42857_1_lane_dupsFlagged.bam	SRR1395130	@dbgap@:reads/SRP012000/SRS637409/SRX597818/SRR1395130/SRR1395130.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCBW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCBW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASCBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCBW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCBW-14A-01D	DNA	EFO	SRS637409	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCBW-14A-01D A42857 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42857	SRX597818	"Specific Capture analysis of normal sample TARGET-20-PASCBW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASCBW-14A-01D A42857 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42857_1_lane_dupsFlagged.bam	SRR1395130	@dbgap@:reads/SRP012000/SRS637409/SRX597818/SRR1395130/SRR1395130.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCBW-09A-01D_TARGET-20-PASCBW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCBW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCBW-14A-01D	DNA	EFO	SRS637409	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCBW-14A-01D A42857 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42857	SRX597818	"Specific Capture analysis of normal sample TARGET-20-PASCBW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASCBW-14A-01D A42857 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42857_1_lane_dupsFlagged.bam	SRR1395130	@dbgap@:reads/SRP012000/SRS637409/SRX597818/SRR1395130/SRR1395130.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCBW-09A-01D_TARGET-20-PASCBW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-04A-02D	DNA	EFO	SRS637514	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCCS-04A-02D A42716 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42716	SRX597950	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCCS-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASCCS-04A-02D A42716 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42716_1_lane_dupsFlagged.bam	SRR1395263	@dbgap@:reads/SRP012000/SRS637514/SRX597950/SRR1395263/SRR1395263.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCCS-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCCS-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-04A-02D	DNA	EFO	SRS637514	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCCS-04A-02D A42716 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42716	SRX597950	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCCS-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASCCS-04A-02D A42716 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42716_1_lane_dupsFlagged.bam	SRR1395263	@dbgap@:reads/SRP012000/SRS637514/SRX597950/SRR1395263/SRR1395263.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCCS-04A-02D_TARGET-20-PASCCS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-04A-02D	DNA	EFO	SRS637514	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCCS-04A-02D A42716 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42716	SRX597950	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCCS-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASCCS-04A-02D A42716 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42716_1_lane_dupsFlagged.bam	SRR1395263	@dbgap@:reads/SRP012000/SRS637514/SRX597950/SRR1395263/SRR1395263.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCCS-04A-02D_TARGET-20-PASCCS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-02D	DNA	EFO	SRS628721	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCCS-09A-02D A32244 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32244	SRX574415	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCCS-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASCCS-09A-02D A32244 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32244_1_lane_dupsFlagged.bam	SRR1344901	@dbgap@:reads/SRP012000/SRS628721/SRX574415/SRR1344901/SRR1344901.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCCS-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCCS-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-02D	DNA	EFO	SRS628721	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCCS-09A-02D A32244 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32244	SRX574415	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCCS-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASCCS-09A-02D A32244 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32244_1_lane_dupsFlagged.bam	SRR1344901	@dbgap@:reads/SRP012000/SRS628721/SRX574415/SRR1344901/SRR1344901.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCCS-09A-02D_TARGET-20-PASCCS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-02D	DNA	EFO	SRS628721	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCCS-09A-02D A32244 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32244	SRX574415	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCCS-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASCCS-09A-02D A32244 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32244_1_lane_dupsFlagged.bam	SRR1344901	@dbgap@:reads/SRP012000/SRS628721/SRX574415/SRR1344901/SRR1344901.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCCS-09A-02D_TARGET-20-PASCCS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCCS-14A-01D A41599 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41599	SRX590807	"Specific Capture analysis of normal sample TARGET-20-PASCCS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASCCS-14A-01D A41599 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41599_1_lane_dupsFlagged.bam	SRR1379849	@dbgap@:reads/SRP012000/SRS270761/SRX590807/SRR1379849/SRR1379849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCCS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCCS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCCS-14A-01D A41599 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41599	SRX590807	"Specific Capture analysis of normal sample TARGET-20-PASCCS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASCCS-14A-01D A41599 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41599_1_lane_dupsFlagged.bam	SRR1379849	@dbgap@:reads/SRP012000/SRS270761/SRX590807/SRR1379849/SRR1379849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCCS-04A-02D_TARGET-20-PASCCS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCCS-14A-01D A41599 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41599	SRX590807	"Specific Capture analysis of normal sample TARGET-20-PASCCS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASCCS-14A-01D A41599 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41599_1_lane_dupsFlagged.bam	SRR1379849	@dbgap@:reads/SRP012000/SRS270761/SRX590807/SRR1379849/SRR1379849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCCS-04A-02D_TARGET-20-PASCCS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCCS-14A-01D A41599 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41599	SRX590807	"Specific Capture analysis of normal sample TARGET-20-PASCCS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASCCS-14A-01D A41599 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41599_1_lane_dupsFlagged.bam	SRR1379849	@dbgap@:reads/SRP012000/SRS270761/SRX590807/SRR1379849/SRR1379849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCCS-09A-02D_TARGET-20-PASCCS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-14A-01D	DNA	EFO	SRS270761	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCCS-14A-01D A41599 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41599	SRX590807	"Specific Capture analysis of normal sample TARGET-20-PASCCS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASCCS-14A-01D A41599 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41599_1_lane_dupsFlagged.bam	SRR1379849	@dbgap@:reads/SRP012000/SRS270761/SRX590807/SRR1379849/SRR1379849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCCS-09A-02D_TARGET-20-PASCCS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCDM-09A-01D	DNA	EFO	SRS633688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCDM-09A-01D A33416 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33416	SRX587983	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCDM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASCDM-09A-01D A33416 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33416_1_lane_dupsFlagged.bam	SRR1373818	@dbgap@:reads/SRP012000/SRS633688/SRX587983/SRR1373818/SRR1373818.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCDM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCDM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASCDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCDM-09A-01D	DNA	EFO	SRS633688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCDM-09A-01D A33416 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33416	SRX587983	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCDM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASCDM-09A-01D A33416 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33416_1_lane_dupsFlagged.bam	SRR1373818	@dbgap@:reads/SRP012000/SRS633688/SRX587983/SRR1373818/SRR1373818.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCDM-09A-01D_TARGET-20-PASCDM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCDM-09A-01D	DNA	EFO	SRS633688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCDM-09A-01D A33416 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33416	SRX587983	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCDM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASCDM-09A-01D A33416 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33416_1_lane_dupsFlagged.bam	SRR1373818	@dbgap@:reads/SRP012000/SRS633688/SRX587983/SRR1373818/SRR1373818.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCDM-09A-01D_TARGET-20-PASCDM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCDM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCDM-14A-01D	DNA	EFO	SRS634750	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCDM-14A-01D A41600 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41600	SRX590867	"Specific Capture analysis of normal sample TARGET-20-PASCDM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASCDM-14A-01D A41600 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41600_1_lane_dupsFlagged.bam	SRR1379808	@dbgap@:reads/SRP012000/SRS634750/SRX590867/SRR1379808/SRR1379808.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCDM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCDM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASCDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCDM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCDM-14A-01D	DNA	EFO	SRS634750	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCDM-14A-01D A41600 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41600	SRX590867	"Specific Capture analysis of normal sample TARGET-20-PASCDM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASCDM-14A-01D A41600 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41600_1_lane_dupsFlagged.bam	SRR1379808	@dbgap@:reads/SRP012000/SRS634750/SRX590867/SRR1379808/SRR1379808.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCDM-09A-01D_TARGET-20-PASCDM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCDM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCDM-14A-01D	DNA	EFO	SRS634750	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCDM-14A-01D A41600 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41600	SRX590867	"Specific Capture analysis of normal sample TARGET-20-PASCDM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASCDM-14A-01D A41600 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41600_1_lane_dupsFlagged.bam	SRR1379808	@dbgap@:reads/SRP012000/SRS634750/SRX590867/SRR1379808/SRR1379808.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCDM-09A-01D_TARGET-20-PASCDM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCFS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFS-09A-01D	DNA	EFO	SRS635535	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCFS-09A-01D A41819 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41819	SRX593314	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCFS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASCFS-09A-01D A41819 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41819_1_lane_dupsFlagged.bam	SRR1385802	@dbgap@:reads/SRP012000/SRS635535/SRX593314/SRR1385802/SRR1385802.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCFS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCFS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01D	DNA	EFO	SRS489662	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCFW-09A-01D A41846 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41846	SRX593323	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCFW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASCFW-09A-01D A41846 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41846_1_lane_dupsFlagged.bam	SRR1385771	@dbgap@:reads/SRP012000/SRS489662/SRX593323/SRR1385771/SRR1385771.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCFW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCFW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01D	DNA	EFO	SRS489662	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCFW-09A-01D A41846 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41846	SRX593323	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCFW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASCFW-09A-01D A41846 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41846_1_lane_dupsFlagged.bam	SRR1385771	@dbgap@:reads/SRP012000/SRS489662/SRX593323/SRR1385771/SRR1385771.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCFW-09A-01D_TARGET-20-PASCFW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01D	DNA	EFO	SRS489662	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCFW-09A-01D A41846 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41846	SRX593323	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCFW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASCFW-09A-01D A41846 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41846_1_lane_dupsFlagged.bam	SRR1385771	@dbgap@:reads/SRP012000/SRS489662/SRX593323/SRR1385771/SRR1385771.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCFW-09A-01D_TARGET-20-PASCFW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-14A-01D	DNA	EFO	SRS489661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCFW-14A-01D A42766 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42766	SRX598010	"Specific Capture analysis of normal sample TARGET-20-PASCFW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASCFW-14A-01D A42766 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42766_1_lane_dupsFlagged.bam	SRR1395283	@dbgap@:reads/SRP012000/SRS489661/SRX598010/SRR1395283/SRR1395283.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCFW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCFW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-14A-01D	DNA	EFO	SRS489661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCFW-14A-01D A42766 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42766	SRX598010	"Specific Capture analysis of normal sample TARGET-20-PASCFW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASCFW-14A-01D A42766 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42766_1_lane_dupsFlagged.bam	SRR1395283	@dbgap@:reads/SRP012000/SRS489661/SRX598010/SRR1395283/SRR1395283.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCFW-09A-01D_TARGET-20-PASCFW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-14A-01D	DNA	EFO	SRS489661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCFW-14A-01D A42766 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42766	SRX598010	"Specific Capture analysis of normal sample TARGET-20-PASCFW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASCFW-14A-01D A42766 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42766_1_lane_dupsFlagged.bam	SRR1395283	@dbgap@:reads/SRP012000/SRS489661/SRX598010/SRR1395283/SRR1395283.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCFW-09A-01D_TARGET-20-PASCFW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-02D	DNA	EFO	SRS628699	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-03A-02D A32245 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32245	SRX574392	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCGR-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASCGR-03A-02D A32245 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32245_1_lane_dupsFlagged.bam	SRR1344886	@dbgap@:reads/SRP012000/SRS628699/SRX574392/SRR1344886/SRR1344886.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCGR-03A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCGR-03A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-02D	DNA	EFO	SRS628699	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-03A-02D A32245 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32245	SRX574392	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCGR-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASCGR-03A-02D A32245 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32245_1_lane_dupsFlagged.bam	SRR1344886	@dbgap@:reads/SRP012000/SRS628699/SRX574392/SRR1344886/SRR1344886.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCGR-03A-02D_TARGET-20-PASCGR-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-02D	DNA	EFO	SRS628699	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-03A-02D A32245 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32245	SRX574392	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCGR-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASCGR-03A-02D A32245 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32245_1_lane_dupsFlagged.bam	SRR1344886	@dbgap@:reads/SRP012000/SRS628699/SRX574392/SRR1344886/SRR1344886.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCGR-03A-02D_TARGET-20-PASCGR-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-01D	DNA	EFO	SRS301120	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-04A-01D A42227 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42227	SRX597683	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCGR-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASCGR-04A-01D A42227 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42227_1_lane_dupsFlagged.bam	SRR1394993	@dbgap@:reads/SRP012000/SRS301120/SRX597683/SRR1394993/SRR1394993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCGR-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCGR-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-01D	DNA	EFO	SRS301120	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-04A-01D A42227 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42227	SRX597683	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCGR-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASCGR-04A-01D A42227 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42227_1_lane_dupsFlagged.bam	SRR1394993	@dbgap@:reads/SRP012000/SRS301120/SRX597683/SRR1394993/SRR1394993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCGR-04A-01D_TARGET-20-PASCGR-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-01D	DNA	EFO	SRS301120	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-04A-01D A42227 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42227	SRX597683	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCGR-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASCGR-04A-01D A42227 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42227_1_lane_dupsFlagged.bam	SRR1394993	@dbgap@:reads/SRP012000/SRS301120/SRX597683/SRR1394993/SRR1394993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCGR-04A-01D_TARGET-20-PASCGR-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-14A-02D A42525 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42525	SRX593896	"Specific Capture analysis of normal sample TARGET-20-PASCGR-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASCGR-14A-02D A42525 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42525_1_lane_dupsFlagged.bam	SRR1386385	@dbgap@:reads/SRP012000/SRS373869/SRX593896/SRR1386385/SRR1386385.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCGR-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCGR-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-14A-02D A42525 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42525	SRX593896	"Specific Capture analysis of normal sample TARGET-20-PASCGR-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASCGR-14A-02D A42525 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42525_1_lane_dupsFlagged.bam	SRR1386385	@dbgap@:reads/SRP012000/SRS373869/SRX593896/SRR1386385/SRR1386385.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCGR-03A-02D_TARGET-20-PASCGR-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-14A-02D A42525 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42525	SRX593896	"Specific Capture analysis of normal sample TARGET-20-PASCGR-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASCGR-14A-02D A42525 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42525_1_lane_dupsFlagged.bam	SRR1386385	@dbgap@:reads/SRP012000/SRS373869/SRX593896/SRR1386385/SRR1386385.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCGR-03A-02D_TARGET-20-PASCGR-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-14A-02D A42525 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42525	SRX593896	"Specific Capture analysis of normal sample TARGET-20-PASCGR-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASCGR-14A-02D A42525 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42525_1_lane_dupsFlagged.bam	SRR1386385	@dbgap@:reads/SRP012000/SRS373869/SRX593896/SRR1386385/SRR1386385.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCGR-04A-01D_TARGET-20-PASCGR-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-14A-02D	DNA	EFO	SRS373869	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-14A-02D A42525 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42525	SRX593896	"Specific Capture analysis of normal sample TARGET-20-PASCGR-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASCGR-14A-02D A42525 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42525_1_lane_dupsFlagged.bam	SRR1386385	@dbgap@:reads/SRP012000/SRS373869/SRX593896/SRR1386385/SRR1386385.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCGR-04A-01D_TARGET-20-PASCGR-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCRP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRP-03A-01D	DNA	EFO	SRS635457	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRP-03A-01D A41783 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41783	SRX593179	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCRP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASCRP-03A-01D A41783 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41783_1_lane_dupsFlagged.bam	SRR1385606	@dbgap@:reads/SRP012000/SRS635457/SRX593179/SRR1385606/SRR1385606.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCRP-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCRP-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASCRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCRP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRP-03A-01D	DNA	EFO	SRS635457	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRP-03A-01D A41783 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41783	SRX593179	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCRP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASCRP-03A-01D A41783 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41783_1_lane_dupsFlagged.bam	SRR1385606	@dbgap@:reads/SRP012000/SRS635457/SRX593179/SRR1385606/SRR1385606.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCRP-03A-01D_TARGET-20-PASCRP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCRP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRP-03A-01D	DNA	EFO	SRS635457	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRP-03A-01D A41783 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41783	SRX593179	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCRP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASCRP-03A-01D A41783 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41783_1_lane_dupsFlagged.bam	SRR1385606	@dbgap@:reads/SRP012000/SRS635457/SRX593179/SRR1385606/SRR1385606.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCRP-03A-01D_TARGET-20-PASCRP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCRP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRP-14A-01D	DNA	EFO	SRS635927	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRP-14A-01D A42490 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42490	SRX593887	"Specific Capture analysis of normal sample TARGET-20-PASCRP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASCRP-14A-01D A42490 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42490_1_lane_dupsFlagged.bam	SRR1386375	@dbgap@:reads/SRP012000/SRS635927/SRX593887/SRR1386375/SRR1386375.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCRP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCRP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASCRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCRP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRP-14A-01D	DNA	EFO	SRS635927	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRP-14A-01D A42490 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42490	SRX593887	"Specific Capture analysis of normal sample TARGET-20-PASCRP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASCRP-14A-01D A42490 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42490_1_lane_dupsFlagged.bam	SRR1386375	@dbgap@:reads/SRP012000/SRS635927/SRX593887/SRR1386375/SRR1386375.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCRP-03A-01D_TARGET-20-PASCRP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASCRP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRP-14A-01D	DNA	EFO	SRS635927	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRP-14A-01D A42490 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42490	SRX593887	"Specific Capture analysis of normal sample TARGET-20-PASCRP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASCRP-14A-01D A42490 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42490_1_lane_dupsFlagged.bam	SRR1386375	@dbgap@:reads/SRP012000/SRS635927/SRX593887/SRR1386375/SRR1386375.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCRP-03A-01D_TARGET-20-PASCRP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-03A-02D	DNA	EFO	SRS628763	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRZ-03A-02D A32246 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32246	SRX574459	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCRZ-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASCRZ-03A-02D A32246 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32246_1_lane_dupsFlagged.bam	SRR1344890	@dbgap@:reads/SRP012000/SRS628763/SRX574459/SRR1344890/SRR1344890.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCRZ-03A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCRZ-03A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-03A-02D	DNA	EFO	SRS628763	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRZ-03A-02D A32246 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32246	SRX574459	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCRZ-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASCRZ-03A-02D A32246 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32246_1_lane_dupsFlagged.bam	SRR1344890	@dbgap@:reads/SRP012000/SRS628763/SRX574459/SRR1344890/SRR1344890.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCRZ-03A-02D_TARGET-20-PASCRZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-03A-02D	DNA	EFO	SRS628763	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRZ-03A-02D A32246 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32246	SRX574459	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCRZ-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASCRZ-03A-02D A32246 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32246_1_lane_dupsFlagged.bam	SRR1344890	@dbgap@:reads/SRP012000/SRS628763/SRX574459/SRR1344890/SRR1344890.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCRZ-03A-02D_TARGET-20-PASCRZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-03D	DNA	EFO	SRS637556	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRZ-04A-03D A42717 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42717	SRX597996	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCRZ-04A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASCRZ-04A-03D A42717 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42717_1_lane_dupsFlagged.bam	SRR1395280	@dbgap@:reads/SRP012000/SRS637556/SRX597996/SRR1395280/SRR1395280.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCRZ-04A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCRZ-04A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-03D	DNA	EFO	SRS637556	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRZ-04A-03D A42717 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42717	SRX597996	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCRZ-04A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASCRZ-04A-03D A42717 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42717_1_lane_dupsFlagged.bam	SRR1395280	@dbgap@:reads/SRP012000/SRS637556/SRX597996/SRR1395280/SRR1395280.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCRZ-04A-03D_TARGET-20-PASCRZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-03D	DNA	EFO	SRS637556	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRZ-04A-03D A42717 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42717	SRX597996	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASCRZ-04A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASCRZ-04A-03D A42717 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42717_1_lane_dupsFlagged.bam	SRR1395280	@dbgap@:reads/SRP012000/SRS637556/SRX597996/SRR1395280/SRR1395280.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCRZ-04A-03D_TARGET-20-PASCRZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-01D	DNA	EFO	SRS301124	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRZ-14A-01D A42302 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42302	SRX593553	"Specific Capture analysis of normal sample TARGET-20-PASCRZ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASCRZ-14A-01D A42302 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42302_1_lane_dupsFlagged.bam	SRR1386024	@dbgap@:reads/SRP012000/SRS301124/SRX593553/SRR1386024/SRR1386024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASCRZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASCRZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-01D	DNA	EFO	SRS301124	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRZ-14A-01D A42302 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42302	SRX593553	"Specific Capture analysis of normal sample TARGET-20-PASCRZ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASCRZ-14A-01D A42302 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42302_1_lane_dupsFlagged.bam	SRR1386024	@dbgap@:reads/SRP012000/SRS301124/SRX593553/SRR1386024/SRR1386024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCRZ-03A-02D_TARGET-20-PASCRZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-01D	DNA	EFO	SRS301124	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRZ-14A-01D A42302 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42302	SRX593553	"Specific Capture analysis of normal sample TARGET-20-PASCRZ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASCRZ-14A-01D A42302 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42302_1_lane_dupsFlagged.bam	SRR1386024	@dbgap@:reads/SRP012000/SRS301124/SRX593553/SRR1386024/SRR1386024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCRZ-03A-02D_TARGET-20-PASCRZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-01D	DNA	EFO	SRS301124	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRZ-14A-01D A42302 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42302	SRX593553	"Specific Capture analysis of normal sample TARGET-20-PASCRZ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASCRZ-14A-01D A42302 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42302_1_lane_dupsFlagged.bam	SRR1386024	@dbgap@:reads/SRP012000/SRS301124/SRX593553/SRR1386024/SRR1386024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCRZ-04A-03D_TARGET-20-PASCRZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-14A-01D	DNA	EFO	SRS301124	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRZ-14A-01D A42302 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42302	SRX593553	"Specific Capture analysis of normal sample TARGET-20-PASCRZ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASCRZ-14A-01D A42302 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42302_1_lane_dupsFlagged.bam	SRR1386024	@dbgap@:reads/SRP012000/SRS301124/SRX593553/SRR1386024/SRR1386024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASCRZ-04A-03D_TARGET-20-PASCRZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDET-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDET-04A-01D	DNA	EFO	SRS637330	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDET-04A-01D A42216 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42216	SRX597713	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDET-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASDET-04A-01D A42216 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42216_1_lane_dupsFlagged.bam	SRR1395006	@dbgap@:reads/SRP012000/SRS637330/SRX597713/SRR1395006/SRR1395006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDET-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDET-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASDET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDET-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDET-04A-01D	DNA	EFO	SRS637330	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDET-04A-01D A42216 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42216	SRX597713	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDET-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASDET-04A-01D A42216 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42216_1_lane_dupsFlagged.bam	SRR1395006	@dbgap@:reads/SRP012000/SRS637330/SRX597713/SRR1395006/SRR1395006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDET-04A-01D_TARGET-20-PASDET-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDET-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDET-04A-01D	DNA	EFO	SRS637330	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDET-04A-01D A42216 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42216	SRX597713	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDET-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASDET-04A-01D A42216 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42216_1_lane_dupsFlagged.bam	SRR1395006	@dbgap@:reads/SRP012000/SRS637330/SRX597713/SRR1395006/SRR1395006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDET-04A-01D_TARGET-20-PASDET-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDET-09A-01D	DNA	EFO	SRS635475	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDET-09A-01D A41784 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41784	SRX593197	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDET-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDET-09A-01D A41784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41784_1_lane_dupsFlagged.bam	SRR1385619	@dbgap@:reads/SRP012000/SRS635475/SRX593197/SRR1385619/SRR1385619.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDET-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDET-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASDET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDET-09A-01D	DNA	EFO	SRS635475	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDET-09A-01D A41784 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41784	SRX593197	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDET-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDET-09A-01D A41784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41784_1_lane_dupsFlagged.bam	SRR1385619	@dbgap@:reads/SRP012000/SRS635475/SRX593197/SRR1385619/SRR1385619.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDET-09A-01D_TARGET-20-PASDET-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDET-09A-01D	DNA	EFO	SRS635475	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDET-09A-01D A41784 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41784	SRX593197	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDET-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDET-09A-01D A41784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41784_1_lane_dupsFlagged.bam	SRR1385619	@dbgap@:reads/SRP012000/SRS635475/SRX593197/SRR1385619/SRR1385619.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDET-09A-01D_TARGET-20-PASDET-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDET-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDET-14A-01D	DNA	EFO	SRS634714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDET-14A-01D A41603 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41603	SRX590821	"Specific Capture analysis of normal sample TARGET-20-PASDET-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDET-14A-01D A41603 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41603_1_lane_dupsFlagged.bam	SRR1379809	@dbgap@:reads/SRP012000/SRS634714/SRX590821/SRR1379809/SRR1379809.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDET-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDET-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASDET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDET-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDET-14A-01D	DNA	EFO	SRS634714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDET-14A-01D A41603 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41603	SRX590821	"Specific Capture analysis of normal sample TARGET-20-PASDET-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDET-14A-01D A41603 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41603_1_lane_dupsFlagged.bam	SRR1379809	@dbgap@:reads/SRP012000/SRS634714/SRX590821/SRR1379809/SRR1379809.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDET-04A-01D_TARGET-20-PASDET-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDET-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDET-14A-01D	DNA	EFO	SRS634714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDET-14A-01D A41603 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41603	SRX590821	"Specific Capture analysis of normal sample TARGET-20-PASDET-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDET-14A-01D A41603 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41603_1_lane_dupsFlagged.bam	SRR1379809	@dbgap@:reads/SRP012000/SRS634714/SRX590821/SRR1379809/SRR1379809.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDET-04A-01D_TARGET-20-PASDET-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDET-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDET-14A-01D	DNA	EFO	SRS634714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDET-14A-01D A41603 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41603	SRX590821	"Specific Capture analysis of normal sample TARGET-20-PASDET-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDET-14A-01D A41603 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41603_1_lane_dupsFlagged.bam	SRR1379809	@dbgap@:reads/SRP012000/SRS634714/SRX590821/SRR1379809/SRR1379809.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDET-09A-01D_TARGET-20-PASDET-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDET-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDET-14A-01D	DNA	EFO	SRS634714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDET-14A-01D A41603 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41603	SRX590821	"Specific Capture analysis of normal sample TARGET-20-PASDET-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDET-14A-01D A41603 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41603_1_lane_dupsFlagged.bam	SRR1379809	@dbgap@:reads/SRP012000/SRS634714/SRX590821/SRR1379809/SRR1379809.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDET-09A-01D_TARGET-20-PASDET-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDGX-09A-02D	DNA	EFO	SRS628703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDGX-09A-02D A32247 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32247	SRX574396	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDGX-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASDGX-09A-02D A32247 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32247_1_lane_dupsFlagged.bam	SRR1344921	@dbgap@:reads/SRP012000/SRS628703/SRX574396/SRR1344921/SRR1344921.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDGX-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDGX-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASDGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDGX-09A-02D	DNA	EFO	SRS628703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDGX-09A-02D A32247 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32247	SRX574396	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDGX-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASDGX-09A-02D A32247 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32247_1_lane_dupsFlagged.bam	SRR1344921	@dbgap@:reads/SRP012000/SRS628703/SRX574396/SRR1344921/SRR1344921.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDGX-09A-02D_TARGET-20-PASDGX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDGX-09A-02D	DNA	EFO	SRS628703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDGX-09A-02D A32247 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32247	SRX574396	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDGX-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASDGX-09A-02D A32247 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32247_1_lane_dupsFlagged.bam	SRR1344921	@dbgap@:reads/SRP012000/SRS628703/SRX574396/SRR1344921/SRR1344921.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDGX-09A-02D_TARGET-20-PASDGX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDGX-14A-01D	DNA	EFO	SRS634712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDGX-14A-01D A41602 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41602	SRX590818	"Specific Capture analysis of normal sample TARGET-20-PASDGX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDGX-14A-01D A41602 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41602_1_lane_dupsFlagged.bam	SRR1379807	@dbgap@:reads/SRP012000/SRS634712/SRX590818/SRR1379807/SRR1379807.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDGX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDGX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASDGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDGX-14A-01D	DNA	EFO	SRS634712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDGX-14A-01D A41602 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41602	SRX590818	"Specific Capture analysis of normal sample TARGET-20-PASDGX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDGX-14A-01D A41602 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41602_1_lane_dupsFlagged.bam	SRR1379807	@dbgap@:reads/SRP012000/SRS634712/SRX590818/SRR1379807/SRR1379807.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDGX-09A-02D_TARGET-20-PASDGX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDGX-14A-01D	DNA	EFO	SRS634712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDGX-14A-01D A41602 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41602	SRX590818	"Specific Capture analysis of normal sample TARGET-20-PASDGX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDGX-14A-01D A41602 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41602_1_lane_dupsFlagged.bam	SRR1379807	@dbgap@:reads/SRP012000/SRS634712/SRX590818/SRR1379807/SRR1379807.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDGX-09A-02D_TARGET-20-PASDGX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDIR-09A-01D	DNA	EFO	SRS635502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDIR-09A-01D A41785 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41785	SRX593223	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDIR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDIR-09A-01D A41785 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41785_1_lane_dupsFlagged.bam	SRR1385593	@dbgap@:reads/SRP012000/SRS635502/SRX593223/SRR1385593/SRR1385593.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDIR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDIR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASDIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDIR-09A-01D	DNA	EFO	SRS635502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDIR-09A-01D A41785 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41785	SRX593223	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDIR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDIR-09A-01D A41785 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41785_1_lane_dupsFlagged.bam	SRR1385593	@dbgap@:reads/SRP012000/SRS635502/SRX593223/SRR1385593/SRR1385593.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDIR-09A-01D_TARGET-20-PASDIR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDIR-09A-01D	DNA	EFO	SRS635502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDIR-09A-01D A41785 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41785	SRX593223	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDIR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDIR-09A-01D A41785 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41785_1_lane_dupsFlagged.bam	SRR1385593	@dbgap@:reads/SRP012000/SRS635502/SRX593223/SRR1385593/SRR1385593.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDIR-09A-01D_TARGET-20-PASDIR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDIR-14A-01D	DNA	EFO	SRS635974	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDIR-14A-01D A42599 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42599	SRX593935	"Specific Capture analysis of normal sample TARGET-20-PASDIR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASDIR-14A-01D A42599 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42599_1_lane_dupsFlagged.bam	SRR1386416	@dbgap@:reads/SRP012000/SRS635974/SRX593935/SRR1386416/SRR1386416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDIR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDIR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASDIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDIR-14A-01D	DNA	EFO	SRS635974	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDIR-14A-01D A42599 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42599	SRX593935	"Specific Capture analysis of normal sample TARGET-20-PASDIR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASDIR-14A-01D A42599 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42599_1_lane_dupsFlagged.bam	SRR1386416	@dbgap@:reads/SRP012000/SRS635974/SRX593935/SRR1386416/SRR1386416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDIR-09A-01D_TARGET-20-PASDIR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDIR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDIR-14A-01D	DNA	EFO	SRS635974	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDIR-14A-01D A42599 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42599	SRX593935	"Specific Capture analysis of normal sample TARGET-20-PASDIR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASDIR-14A-01D A42599 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42599_1_lane_dupsFlagged.bam	SRR1386416	@dbgap@:reads/SRP012000/SRS635974/SRX593935/SRR1386416/SRR1386416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDIR-09A-01D_TARGET-20-PASDIR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDJY-09A-01D	DNA	EFO	SRS628767	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDJY-09A-01D A32248 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32248	SRX574464	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDJY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASDJY-09A-01D A32248 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32248_1_lane_dupsFlagged.bam	SRR1344847	@dbgap@:reads/SRP012000/SRS628767/SRX574464/SRR1344847/SRR1344847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDJY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDJY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASDJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDJY-09A-01D	DNA	EFO	SRS628767	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDJY-09A-01D A32248 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32248	SRX574464	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDJY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASDJY-09A-01D A32248 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32248_1_lane_dupsFlagged.bam	SRR1344847	@dbgap@:reads/SRP012000/SRS628767/SRX574464/SRR1344847/SRR1344847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDJY-09A-01D_TARGET-20-PASDJY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDJY-09A-01D	DNA	EFO	SRS628767	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDJY-09A-01D A32248 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32248	SRX574464	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDJY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASDJY-09A-01D A32248 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32248_1_lane_dupsFlagged.bam	SRR1344847	@dbgap@:reads/SRP012000/SRS628767/SRX574464/SRR1344847/SRR1344847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDJY-09A-01D_TARGET-20-PASDJY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDJY-14A-01D	DNA	EFO	SRS634748	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDJY-14A-01D A41604 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41604	SRX590866	"Specific Capture analysis of normal sample TARGET-20-PASDJY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDJY-14A-01D A41604 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41604_1_lane_dupsFlagged.bam	SRR1379818	@dbgap@:reads/SRP012000/SRS634748/SRX590866/SRR1379818/SRR1379818.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDJY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDJY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASDJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDJY-14A-01D	DNA	EFO	SRS634748	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDJY-14A-01D A41604 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41604	SRX590866	"Specific Capture analysis of normal sample TARGET-20-PASDJY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDJY-14A-01D A41604 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41604_1_lane_dupsFlagged.bam	SRR1379818	@dbgap@:reads/SRP012000/SRS634748/SRX590866/SRR1379818/SRR1379818.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDJY-09A-01D_TARGET-20-PASDJY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDJY-14A-01D	DNA	EFO	SRS634748	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDJY-14A-01D A41604 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41604	SRX590866	"Specific Capture analysis of normal sample TARGET-20-PASDJY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDJY-14A-01D A41604 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41604_1_lane_dupsFlagged.bam	SRR1379818	@dbgap@:reads/SRP012000/SRS634748/SRX590866/SRR1379818/SRR1379818.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDJY-09A-01D_TARGET-20-PASDJY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDMF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDMF-09A-01D	DNA	EFO	SRS635516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDMF-09A-01D A41786 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41786	SRX593240	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDMF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDMF-09A-01D A41786 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41786_1_lane_dupsFlagged.bam	SRR1385651	@dbgap@:reads/SRP012000/SRS635516/SRX593240/SRR1385651/SRR1385651.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDMF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDMF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASDMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDMF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDMF-09A-01D	DNA	EFO	SRS635516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDMF-09A-01D A41786 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41786	SRX593240	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDMF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDMF-09A-01D A41786 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41786_1_lane_dupsFlagged.bam	SRR1385651	@dbgap@:reads/SRP012000/SRS635516/SRX593240/SRR1385651/SRR1385651.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDMF-09A-01D_TARGET-20-PASDMF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDMF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDMF-09A-01D	DNA	EFO	SRS635516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDMF-09A-01D A41786 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41786	SRX593240	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDMF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDMF-09A-01D A41786 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41786_1_lane_dupsFlagged.bam	SRR1385651	@dbgap@:reads/SRP012000/SRS635516/SRX593240/SRR1385651/SRR1385651.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDMF-09A-01D_TARGET-20-PASDMF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDMF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDMF-14A-01D	DNA	EFO	SRS634751	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDMF-14A-01D A41605 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41605	SRX590869	"Specific Capture analysis of normal sample TARGET-20-PASDMF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDMF-14A-01D A41605 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41605_1_lane_dupsFlagged.bam	SRR1379884	@dbgap@:reads/SRP012000/SRS634751/SRX590869/SRR1379884/SRR1379884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDMF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDMF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASDMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDMF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDMF-14A-01D	DNA	EFO	SRS634751	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDMF-14A-01D A41605 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41605	SRX590869	"Specific Capture analysis of normal sample TARGET-20-PASDMF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDMF-14A-01D A41605 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41605_1_lane_dupsFlagged.bam	SRR1379884	@dbgap@:reads/SRP012000/SRS634751/SRX590869/SRR1379884/SRR1379884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDMF-09A-01D_TARGET-20-PASDMF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDMF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDMF-14A-01D	DNA	EFO	SRS634751	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDMF-14A-01D A41605 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41605	SRX590869	"Specific Capture analysis of normal sample TARGET-20-PASDMF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDMF-14A-01D A41605 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41605_1_lane_dupsFlagged.bam	SRR1379884	@dbgap@:reads/SRP012000/SRS634751/SRX590869/SRR1379884/SRR1379884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDMF-09A-01D_TARGET-20-PASDMF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDNU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDNU-09A-01D	DNA	EFO	SRS635608	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDNU-09A-01D A41936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41936	SRX593427	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDNU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASDNU-09A-01D A41936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41936_1_lane_dupsFlagged.bam	SRR1385879	@dbgap@:reads/SRP012000/SRS635608/SRX593427/SRR1385879/SRR1385879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDNU-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDNU-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASDNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDNU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDNU-09A-01D	DNA	EFO	SRS635608	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDNU-09A-01D A41936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41936	SRX593427	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDNU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASDNU-09A-01D A41936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41936_1_lane_dupsFlagged.bam	SRR1385879	@dbgap@:reads/SRP012000/SRS635608/SRX593427/SRR1385879/SRR1385879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDNU-09A-01D_TARGET-20-PASDNU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDNU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDNU-09A-01D	DNA	EFO	SRS635608	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDNU-09A-01D A41936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41936	SRX593427	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDNU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASDNU-09A-01D A41936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41936_1_lane_dupsFlagged.bam	SRR1385879	@dbgap@:reads/SRP012000/SRS635608/SRX593427/SRR1385879/SRR1385879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDNU-09A-01D_TARGET-20-PASDNU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDNU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDNU-14A-01D	DNA	EFO	SRS637426	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDNU-14A-01D A42808 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42808	SRX597835	"Specific Capture analysis of normal sample TARGET-20-PASDNU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASDNU-14A-01D A42808 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42808_1_lane_dupsFlagged.bam	SRR1395136	@dbgap@:reads/SRP012000/SRS637426/SRX597835/SRR1395136/SRR1395136.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDNU-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDNU-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASDNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDNU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDNU-14A-01D	DNA	EFO	SRS637426	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDNU-14A-01D A42808 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42808	SRX597835	"Specific Capture analysis of normal sample TARGET-20-PASDNU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASDNU-14A-01D A42808 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42808_1_lane_dupsFlagged.bam	SRR1395136	@dbgap@:reads/SRP012000/SRS637426/SRX597835/SRR1395136/SRR1395136.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDNU-09A-01D_TARGET-20-PASDNU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDNU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDNU-14A-01D	DNA	EFO	SRS637426	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDNU-14A-01D A42808 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42808	SRX597835	"Specific Capture analysis of normal sample TARGET-20-PASDNU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASDNU-14A-01D A42808 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42808_1_lane_dupsFlagged.bam	SRR1395136	@dbgap@:reads/SRP012000/SRS637426/SRX597835/SRR1395136/SRR1395136.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDNU-09A-01D_TARGET-20-PASDNU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDSN-09A-01D	DNA	EFO	SRS635478	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDSN-09A-01D A41787 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41787	SRX593200	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDSN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDSN-09A-01D A41787 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41787_1_lane_dupsFlagged.bam	SRR1385589	@dbgap@:reads/SRP012000/SRS635478/SRX593200/SRR1385589/SRR1385589.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDSN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDSN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASDSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDSN-09A-01D	DNA	EFO	SRS635478	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDSN-09A-01D A41787 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41787	SRX593200	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDSN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDSN-09A-01D A41787 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41787_1_lane_dupsFlagged.bam	SRR1385589	@dbgap@:reads/SRP012000/SRS635478/SRX593200/SRR1385589/SRR1385589.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDSN-09A-01D_TARGET-20-PASDSN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDSN-09A-01D	DNA	EFO	SRS635478	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDSN-09A-01D A41787 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41787	SRX593200	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDSN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDSN-09A-01D A41787 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41787_1_lane_dupsFlagged.bam	SRR1385589	@dbgap@:reads/SRP012000/SRS635478/SRX593200/SRR1385589/SRR1385589.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDSN-09A-01D_TARGET-20-PASDSN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDSN-14A-01D	DNA	EFO	SRS634683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDSN-14A-01D A41607 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41607	SRX590781	"Specific Capture analysis of normal sample TARGET-20-PASDSN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDSN-14A-01D A41607 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41607_1_lane_dupsFlagged.bam	SRR1379841	@dbgap@:reads/SRP012000/SRS634683/SRX590781/SRR1379841/SRR1379841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDSN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDSN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASDSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDSN-14A-01D	DNA	EFO	SRS634683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDSN-14A-01D A41607 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41607	SRX590781	"Specific Capture analysis of normal sample TARGET-20-PASDSN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDSN-14A-01D A41607 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41607_1_lane_dupsFlagged.bam	SRR1379841	@dbgap@:reads/SRP012000/SRS634683/SRX590781/SRR1379841/SRR1379841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDSN-09A-01D_TARGET-20-PASDSN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDSN-14A-01D	DNA	EFO	SRS634683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDSN-14A-01D A41607 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41607	SRX590781	"Specific Capture analysis of normal sample TARGET-20-PASDSN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDSN-14A-01D A41607 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41607_1_lane_dupsFlagged.bam	SRR1379841	@dbgap@:reads/SRP012000/SRS634683/SRX590781/SRR1379841/SRR1379841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDSN-09A-01D_TARGET-20-PASDSN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDTY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDTY-03A-01D	DNA	EFO	SRS635466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDTY-03A-01D A41788 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41788	SRX593188	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDTY-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDTY-03A-01D A41788 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41788_1_lane_dupsFlagged.bam	SRR1385623	@dbgap@:reads/SRP012000/SRS635466/SRX593188/SRR1385623/SRR1385623.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDTY-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDTY-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASDTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDTY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDTY-03A-01D	DNA	EFO	SRS635466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDTY-03A-01D A41788 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41788	SRX593188	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDTY-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDTY-03A-01D A41788 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41788_1_lane_dupsFlagged.bam	SRR1385623	@dbgap@:reads/SRP012000/SRS635466/SRX593188/SRR1385623/SRR1385623.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDTY-03A-01D_TARGET-20-PASDTY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDTY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDTY-03A-01D	DNA	EFO	SRS635466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDTY-03A-01D A41788 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41788	SRX593188	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDTY-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDTY-03A-01D A41788 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41788_1_lane_dupsFlagged.bam	SRR1385623	@dbgap@:reads/SRP012000/SRS635466/SRX593188/SRR1385623/SRR1385623.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDTY-03A-01D_TARGET-20-PASDTY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDTY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDTY-04A-01D	DNA	EFO	SRS637317	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDTY-04A-01D A42243 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42243	SRX597688	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDTY-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASDTY-04A-01D A42243 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42243_1_lane_dupsFlagged.bam	SRR1394989	@dbgap@:reads/SRP012000/SRS637317/SRX597688/SRR1394989/SRR1394989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDTY-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDTY-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASDTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDTY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDTY-04A-01D	DNA	EFO	SRS637317	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDTY-04A-01D A42243 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42243	SRX597688	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDTY-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASDTY-04A-01D A42243 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42243_1_lane_dupsFlagged.bam	SRR1394989	@dbgap@:reads/SRP012000/SRS637317/SRX597688/SRR1394989/SRR1394989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDTY-04A-01D_TARGET-20-PASDTY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDTY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDTY-04A-01D	DNA	EFO	SRS637317	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDTY-04A-01D A42243 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42243	SRX597688	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDTY-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASDTY-04A-01D A42243 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42243_1_lane_dupsFlagged.bam	SRR1394989	@dbgap@:reads/SRP012000/SRS637317/SRX597688/SRR1394989/SRR1394989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDTY-04A-01D_TARGET-20-PASDTY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDTY-14A-01D	DNA	EFO	SRS634709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDTY-14A-01D A41610 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41610	SRX590816	"Specific Capture analysis of normal sample TARGET-20-PASDTY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDTY-14A-01D A41610 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41610_1_lane_dupsFlagged.bam	SRR1379805	@dbgap@:reads/SRP012000/SRS634709/SRX590816/SRR1379805/SRR1379805.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDTY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDTY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASDTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDTY-14A-01D	DNA	EFO	SRS634709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDTY-14A-01D A41610 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41610	SRX590816	"Specific Capture analysis of normal sample TARGET-20-PASDTY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDTY-14A-01D A41610 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41610_1_lane_dupsFlagged.bam	SRR1379805	@dbgap@:reads/SRP012000/SRS634709/SRX590816/SRR1379805/SRR1379805.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDTY-03A-01D_TARGET-20-PASDTY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDTY-14A-01D	DNA	EFO	SRS634709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDTY-14A-01D A41610 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41610	SRX590816	"Specific Capture analysis of normal sample TARGET-20-PASDTY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDTY-14A-01D A41610 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41610_1_lane_dupsFlagged.bam	SRR1379805	@dbgap@:reads/SRP012000/SRS634709/SRX590816/SRR1379805/SRR1379805.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDTY-03A-01D_TARGET-20-PASDTY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDTY-14A-01D	DNA	EFO	SRS634709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDTY-14A-01D A41610 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41610	SRX590816	"Specific Capture analysis of normal sample TARGET-20-PASDTY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDTY-14A-01D A41610 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41610_1_lane_dupsFlagged.bam	SRR1379805	@dbgap@:reads/SRP012000/SRS634709/SRX590816/SRR1379805/SRR1379805.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDTY-04A-01D_TARGET-20-PASDTY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDTY-14A-01D	DNA	EFO	SRS634709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDTY-14A-01D A41610 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41610	SRX590816	"Specific Capture analysis of normal sample TARGET-20-PASDTY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDTY-14A-01D A41610 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41610_1_lane_dupsFlagged.bam	SRR1379805	@dbgap@:reads/SRP012000/SRS634709/SRX590816/SRR1379805/SRR1379805.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDTY-04A-01D_TARGET-20-PASDTY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDUD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDUD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDUD-09A-02D	DNA	EFO	SRS628770	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDUD-09A-02D A32249 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32249	SRX574467	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDUD-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASDUD-09A-02D A32249 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32249_1_lane_dupsFlagged.bam	SRR1344869	@dbgap@:reads/SRP012000/SRS628770/SRX574467/SRR1344869/SRR1344869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDUD-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDUD-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASDUD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDUD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDUD-09A-02D	DNA	EFO	SRS628770	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDUD-09A-02D A32249 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32249	SRX574467	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDUD-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASDUD-09A-02D A32249 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32249_1_lane_dupsFlagged.bam	SRR1344869	@dbgap@:reads/SRP012000/SRS628770/SRX574467/SRR1344869/SRR1344869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDUD-09A-02D_TARGET-20-PASDUD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDUD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDUD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDUD-09A-02D	DNA	EFO	SRS628770	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDUD-09A-02D A32249 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32249	SRX574467	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDUD-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASDUD-09A-02D A32249 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32249_1_lane_dupsFlagged.bam	SRR1344869	@dbgap@:reads/SRP012000/SRS628770/SRX574467/SRR1344869/SRR1344869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDUD-09A-02D_TARGET-20-PASDUD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDUD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDUD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDUD-14A-01D	DNA	EFO	SRS634691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDUD-14A-01D A41606 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41606	SRX590790	"Specific Capture analysis of normal sample TARGET-20-PASDUD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDUD-14A-01D A41606 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41606_1_lane_dupsFlagged.bam	SRR1379842	@dbgap@:reads/SRP012000/SRS634691/SRX590790/SRR1379842/SRR1379842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDUD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDUD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASDUD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDUD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDUD-14A-01D	DNA	EFO	SRS634691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDUD-14A-01D A41606 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41606	SRX590790	"Specific Capture analysis of normal sample TARGET-20-PASDUD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDUD-14A-01D A41606 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41606_1_lane_dupsFlagged.bam	SRR1379842	@dbgap@:reads/SRP012000/SRS634691/SRX590790/SRR1379842/SRR1379842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDUD-09A-02D_TARGET-20-PASDUD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDUD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDUD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDUD-14A-01D	DNA	EFO	SRS634691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDUD-14A-01D A41606 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41606	SRX590790	"Specific Capture analysis of normal sample TARGET-20-PASDUD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDUD-14A-01D A41606 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41606_1_lane_dupsFlagged.bam	SRR1379842	@dbgap@:reads/SRP012000/SRS634691/SRX590790/SRR1379842/SRR1379842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDUD-09A-02D_TARGET-20-PASDUD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDVA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDVA-09A-02D	DNA	EFO	SRS628749	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDVA-09A-02D A32250 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32250	SRX574445	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDVA-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASDVA-09A-02D A32250 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32250_1_lane_dupsFlagged.bam	SRR1344837	@dbgap@:reads/SRP012000/SRS628749/SRX574445/SRR1344837/SRR1344837.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDVA-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDVA-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASDVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDVA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDVA-09A-02D	DNA	EFO	SRS628749	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDVA-09A-02D A32250 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32250	SRX574445	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDVA-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASDVA-09A-02D A32250 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32250_1_lane_dupsFlagged.bam	SRR1344837	@dbgap@:reads/SRP012000/SRS628749/SRX574445/SRR1344837/SRR1344837.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDVA-09A-02D_TARGET-20-PASDVA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDVA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDVA-09A-02D	DNA	EFO	SRS628749	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDVA-09A-02D A32250 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32250	SRX574445	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDVA-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASDVA-09A-02D A32250 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32250_1_lane_dupsFlagged.bam	SRR1344837	@dbgap@:reads/SRP012000/SRS628749/SRX574445/SRR1344837/SRR1344837.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDVA-09A-02D_TARGET-20-PASDVA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDVA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDVA-14A-01D	DNA	EFO	SRS635920	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDVA-14A-01D A42492 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42492	SRX593879	"Specific Capture analysis of normal sample TARGET-20-PASDVA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASDVA-14A-01D A42492 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42492_1_lane_dupsFlagged.bam	SRR1386374	@dbgap@:reads/SRP012000/SRS635920/SRX593879/SRR1386374/SRR1386374.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDVA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDVA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASDVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDVA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDVA-14A-01D	DNA	EFO	SRS635920	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDVA-14A-01D A42492 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42492	SRX593879	"Specific Capture analysis of normal sample TARGET-20-PASDVA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASDVA-14A-01D A42492 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42492_1_lane_dupsFlagged.bam	SRR1386374	@dbgap@:reads/SRP012000/SRS635920/SRX593879/SRR1386374/SRR1386374.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDVA-09A-02D_TARGET-20-PASDVA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDVA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDVA-14A-01D	DNA	EFO	SRS635920	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDVA-14A-01D A42492 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42492	SRX593879	"Specific Capture analysis of normal sample TARGET-20-PASDVA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASDVA-14A-01D A42492 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42492_1_lane_dupsFlagged.bam	SRR1386374	@dbgap@:reads/SRP012000/SRS635920/SRX593879/SRR1386374/SRR1386374.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDVA-09A-02D_TARGET-20-PASDVA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDXF-09A-01D	DNA	EFO	SRS635481	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDXF-09A-01D A41789 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41789	SRX593203	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDXF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASDXF-09A-01D A41789 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41789_1_lane_dupsFlagged.bam	SRR1385621	@dbgap@:reads/SRP012000/SRS635481/SRX593203/SRR1385621/SRR1385621.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDXF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDXF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASDXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDXF-09A-01D	DNA	EFO	SRS635481	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDXF-09A-01D A41789 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41789	SRX593203	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDXF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASDXF-09A-01D A41789 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41789_1_lane_dupsFlagged.bam	SRR1385621	@dbgap@:reads/SRP012000/SRS635481/SRX593203/SRR1385621/SRR1385621.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDXF-09A-01D_TARGET-20-PASDXF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDXF-09A-01D	DNA	EFO	SRS635481	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDXF-09A-01D A41789 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41789	SRX593203	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDXF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASDXF-09A-01D A41789 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41789_1_lane_dupsFlagged.bam	SRR1385621	@dbgap@:reads/SRP012000/SRS635481/SRX593203/SRR1385621/SRR1385621.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDXF-09A-01D_TARGET-20-PASDXF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDXF-14A-01D	DNA	EFO	SRS634710	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDXF-14A-01D A41609 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41609	SRX590815	"Specific Capture analysis of normal sample TARGET-20-PASDXF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDXF-14A-01D A41609 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41609_1_lane_dupsFlagged.bam	SRR1379834	@dbgap@:reads/SRP012000/SRS634710/SRX590815/SRR1379834/SRR1379834.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDXF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDXF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASDXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDXF-14A-01D	DNA	EFO	SRS634710	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDXF-14A-01D A41609 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41609	SRX590815	"Specific Capture analysis of normal sample TARGET-20-PASDXF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDXF-14A-01D A41609 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41609_1_lane_dupsFlagged.bam	SRR1379834	@dbgap@:reads/SRP012000/SRS634710/SRX590815/SRR1379834/SRR1379834.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDXF-09A-01D_TARGET-20-PASDXF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDXF-14A-01D	DNA	EFO	SRS634710	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDXF-14A-01D A41609 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	222	A41609	SRX590815	"Specific Capture analysis of normal sample TARGET-20-PASDXF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDXF-14A-01D A41609 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41609_1_lane_dupsFlagged.bam	SRR1379834	@dbgap@:reads/SRP012000/SRS634710/SRX590815/SRR1379834/SRR1379834.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDXF-09A-01D_TARGET-20-PASDXF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDXR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDXR-04A-01D	DNA	EFO	SRS637531	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDXR-04A-01D A42718 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42718	SRX597969	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDXR-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASDXR-04A-01D A42718 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42718_1_lane_dupsFlagged.bam	SRR1395235	@dbgap@:reads/SRP012000/SRS637531/SRX597969/SRR1395235/SRR1395235.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDXR-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDXR-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDXR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDXR-04A-01D	DNA	EFO	SRS637531	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDXR-04A-01D A42718 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42718	SRX597969	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDXR-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASDXR-04A-01D A42718 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42718_1_lane_dupsFlagged.bam	SRR1395235	@dbgap@:reads/SRP012000/SRS637531/SRX597969/SRR1395235/SRR1395235.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDXR-04A-01D_TARGET-20-PASDXR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDXR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDXR-04A-01D	DNA	EFO	SRS637531	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDXR-04A-01D A42718 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42718	SRX597969	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDXR-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASDXR-04A-01D A42718 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42718_1_lane_dupsFlagged.bam	SRR1395235	@dbgap@:reads/SRP012000/SRS637531/SRX597969/SRR1395235/SRR1395235.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDXR-04A-01D_TARGET-20-PASDXR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDXR-09A-02D	DNA	EFO	SRS628296	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDXR-09A-02D A31214 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31214	SRX573361	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDXR-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASDXR-09A-02D A31214 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31214_1_lane_dupsFlagged.bam	SRR1342609	@dbgap@:reads/SRP012000/SRS628296/SRX573361/SRR1342609/SRR1342609.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDXR-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDXR-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDXR-09A-02D	DNA	EFO	SRS628296	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDXR-09A-02D A31214 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31214	SRX573361	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDXR-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASDXR-09A-02D A31214 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31214_1_lane_dupsFlagged.bam	SRR1342609	@dbgap@:reads/SRP012000/SRS628296/SRX573361/SRR1342609/SRR1342609.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDXR-09A-02D_TARGET-20-PASDXR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDXR-09A-02D	DNA	EFO	SRS628296	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDXR-09A-02D A31214 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31214	SRX573361	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDXR-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASDXR-09A-02D A31214 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31214_1_lane_dupsFlagged.bam	SRR1342609	@dbgap@:reads/SRP012000/SRS628296/SRX573361/SRR1342609/SRR1342609.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDXR-09A-02D_TARGET-20-PASDXR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDXR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDXR-14A-01D	DNA	EFO	SRS634724	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDXR-14A-01D A41608 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41608	SRX590835	"Specific Capture analysis of normal sample TARGET-20-PASDXR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDXR-14A-01D A41608 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41608_1_lane_dupsFlagged.bam	SRR1379806	@dbgap@:reads/SRP012000/SRS634724/SRX590835/SRR1379806/SRR1379806.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDXR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDXR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDXR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDXR-14A-01D	DNA	EFO	SRS634724	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDXR-14A-01D A41608 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41608	SRX590835	"Specific Capture analysis of normal sample TARGET-20-PASDXR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDXR-14A-01D A41608 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41608_1_lane_dupsFlagged.bam	SRR1379806	@dbgap@:reads/SRP012000/SRS634724/SRX590835/SRR1379806/SRR1379806.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDXR-04A-01D_TARGET-20-PASDXR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDXR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDXR-14A-01D	DNA	EFO	SRS634724	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDXR-14A-01D A41608 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41608	SRX590835	"Specific Capture analysis of normal sample TARGET-20-PASDXR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDXR-14A-01D A41608 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41608_1_lane_dupsFlagged.bam	SRR1379806	@dbgap@:reads/SRP012000/SRS634724/SRX590835/SRR1379806/SRR1379806.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDXR-04A-01D_TARGET-20-PASDXR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDXR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDXR-14A-01D	DNA	EFO	SRS634724	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDXR-14A-01D A41608 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41608	SRX590835	"Specific Capture analysis of normal sample TARGET-20-PASDXR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDXR-14A-01D A41608 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41608_1_lane_dupsFlagged.bam	SRR1379806	@dbgap@:reads/SRP012000/SRS634724/SRX590835/SRR1379806/SRR1379806.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDXR-09A-02D_TARGET-20-PASDXR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDXR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDXR-14A-01D	DNA	EFO	SRS634724	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDXR-14A-01D A41608 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41608	SRX590835	"Specific Capture analysis of normal sample TARGET-20-PASDXR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDXR-14A-01D A41608 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41608_1_lane_dupsFlagged.bam	SRR1379806	@dbgap@:reads/SRP012000/SRS634724/SRX590835/SRR1379806/SRR1379806.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDXR-09A-02D_TARGET-20-PASDXR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDZT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDZT-09A-01D	DNA	EFO	SRS633697	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDZT-09A-01D A33417 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33417	SRX587992	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDZT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASDZT-09A-01D A33417 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33417_1_lane_dupsFlagged.bam	SRR1373839	@dbgap@:reads/SRP012000/SRS633697/SRX587992/SRR1373839/SRR1373839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDZT-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDZT-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASDZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDZT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDZT-09A-01D	DNA	EFO	SRS633697	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDZT-09A-01D A33417 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33417	SRX587992	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDZT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASDZT-09A-01D A33417 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33417_1_lane_dupsFlagged.bam	SRR1373839	@dbgap@:reads/SRP012000/SRS633697/SRX587992/SRR1373839/SRR1373839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDZT-09A-01D_TARGET-20-PASDZT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDZT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDZT-09A-01D	DNA	EFO	SRS633697	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDZT-09A-01D A33417 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33417	SRX587992	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASDZT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASDZT-09A-01D A33417 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33417_1_lane_dupsFlagged.bam	SRR1373839	@dbgap@:reads/SRP012000/SRS633697/SRX587992/SRR1373839/SRR1373839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDZT-09A-01D_TARGET-20-PASDZT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASDZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDZT-10A-01D	DNA	EFO	SRS634725	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDZT-10A-01D A41611 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41611	SRX590833	"Specific Capture analysis of normal sample TARGET-20-PASDZT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDZT-10A-01D A41611 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41611_1_lane_dupsFlagged.bam	SRR1379831	@dbgap@:reads/SRP012000/SRS634725/SRX590833/SRR1379831/SRR1379831.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASDZT-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASDZT-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASDZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDZT-10A-01D	DNA	EFO	SRS634725	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDZT-10A-01D A41611 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41611	SRX590833	"Specific Capture analysis of normal sample TARGET-20-PASDZT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDZT-10A-01D A41611 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41611_1_lane_dupsFlagged.bam	SRR1379831	@dbgap@:reads/SRP012000/SRS634725/SRX590833/SRR1379831/SRR1379831.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDZT-09A-01D_TARGET-20-PASDZT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASDZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASDZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDZT-10A-01D	DNA	EFO	SRS634725	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDZT-10A-01D A41611 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41611	SRX590833	"Specific Capture analysis of normal sample TARGET-20-PASDZT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASDZT-10A-01D A41611 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41611_1_lane_dupsFlagged.bam	SRR1379831	@dbgap@:reads/SRP012000/SRS634725/SRX590833/SRR1379831/SRR1379831.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASDZT-09A-01D_TARGET-20-PASDZT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASECW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASECW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASECW-09A-02D	DNA	EFO	SRS628728	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASECW-09A-02D A32251 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32251	SRX574423	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASECW-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASECW-09A-02D A32251 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32251_1_lane_dupsFlagged.bam	SRR1344862	@dbgap@:reads/SRP012000/SRS628728/SRX574423/SRR1344862/SRR1344862.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASECW-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASECW-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASEFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEFD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEFD-03A-01D	DNA	EFO	SRS628320	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEFD-03A-01D A31255 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31255	SRX573395	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASEFD-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASEFD-03A-01D A31255 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31255_1_lane_dupsFlagged.bam	SRR1342650	@dbgap@:reads/SRP012000/SRS628320/SRX573395/SRR1342650/SRR1342650.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASEFD-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASEFD-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASEFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEFD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEFD-03A-01D	DNA	EFO	SRS628320	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEFD-03A-01D A31255 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31255	SRX573395	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASEFD-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASEFD-03A-01D A31255 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31255_1_lane_dupsFlagged.bam	SRR1342650	@dbgap@:reads/SRP012000/SRS628320/SRX573395/SRR1342650/SRR1342650.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASEFD-03A-01D_TARGET-20-PASEFD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASEFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEFD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEFD-03A-01D	DNA	EFO	SRS628320	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEFD-03A-01D A31255 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31255	SRX573395	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASEFD-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASEFD-03A-01D A31255 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31255_1_lane_dupsFlagged.bam	SRR1342650	@dbgap@:reads/SRP012000/SRS628320/SRX573395/SRR1342650/SRR1342650.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASEFD-03A-01D_TARGET-20-PASEFD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASEFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEFD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEFD-14A-01D	DNA	EFO	SRS635932	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEFD-14A-01D A42493 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42493	SRX593893	"Specific Capture analysis of normal sample TARGET-20-PASEFD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASEFD-14A-01D A42493 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42493_1_lane_dupsFlagged.bam	SRR1386395	@dbgap@:reads/SRP012000/SRS635932/SRX593893/SRR1386395/SRR1386395.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASEFD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASEFD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASEFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEFD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEFD-14A-01D	DNA	EFO	SRS635932	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEFD-14A-01D A42493 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42493	SRX593893	"Specific Capture analysis of normal sample TARGET-20-PASEFD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASEFD-14A-01D A42493 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42493_1_lane_dupsFlagged.bam	SRR1386395	@dbgap@:reads/SRP012000/SRS635932/SRX593893/SRR1386395/SRR1386395.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASEFD-03A-01D_TARGET-20-PASEFD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASEFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEFD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEFD-14A-01D	DNA	EFO	SRS635932	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEFD-14A-01D A42493 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42493	SRX593893	"Specific Capture analysis of normal sample TARGET-20-PASEFD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASEFD-14A-01D A42493 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42493_1_lane_dupsFlagged.bam	SRR1386395	@dbgap@:reads/SRP012000/SRS635932/SRX593893/SRR1386395/SRR1386395.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASEFD-03A-01D_TARGET-20-PASEFD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASEGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEGC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEGC-09A-01D	DNA	EFO	SRS628744	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEGC-09A-01D A32252 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32252	SRX574440	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASEGC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASEGC-09A-01D A32252 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32252_1_lane_dupsFlagged.bam	SRR1344914	@dbgap@:reads/SRP012000/SRS628744/SRX574440/SRR1344914/SRR1344914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASEGC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASEGC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASEGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEGC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEGC-09A-01D	DNA	EFO	SRS628744	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEGC-09A-01D A32252 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32252	SRX574440	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASEGC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASEGC-09A-01D A32252 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32252_1_lane_dupsFlagged.bam	SRR1344914	@dbgap@:reads/SRP012000/SRS628744/SRX574440/SRR1344914/SRR1344914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASEGC-09A-01D_TARGET-20-PASEGC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASEGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEGC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEGC-09A-01D	DNA	EFO	SRS628744	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEGC-09A-01D A32252 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32252	SRX574440	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASEGC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASEGC-09A-01D A32252 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32252_1_lane_dupsFlagged.bam	SRR1344914	@dbgap@:reads/SRP012000/SRS628744/SRX574440/SRR1344914/SRR1344914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASEGC-09A-01D_TARGET-20-PASEGC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASEGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEGC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEGC-14A-01D	DNA	EFO	SRS635971	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEGC-14A-01D A42601 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42601	SRX593933	"Specific Capture analysis of normal sample TARGET-20-PASEGC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASEGC-14A-01D A42601 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42601_1_lane_dupsFlagged.bam	SRR1386439	@dbgap@:reads/SRP012000/SRS635971/SRX593933/SRR1386439/SRR1386439.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASEGC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASEGC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASEGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEGC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEGC-14A-01D	DNA	EFO	SRS635971	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEGC-14A-01D A42601 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42601	SRX593933	"Specific Capture analysis of normal sample TARGET-20-PASEGC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASEGC-14A-01D A42601 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42601_1_lane_dupsFlagged.bam	SRR1386439	@dbgap@:reads/SRP012000/SRS635971/SRX593933/SRR1386439/SRR1386439.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASEGC-09A-01D_TARGET-20-PASEGC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASEGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEGC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEGC-14A-01D	DNA	EFO	SRS635971	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEGC-14A-01D A42601 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42601	SRX593933	"Specific Capture analysis of normal sample TARGET-20-PASEGC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASEGC-14A-01D A42601 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42601_1_lane_dupsFlagged.bam	SRR1386439	@dbgap@:reads/SRP012000/SRS635971/SRX593933/SRR1386439/SRR1386439.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASEGC-09A-01D_TARGET-20-PASEGC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASELF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASELF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASELF-09A-01D	DNA	EFO	SRS628748	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASELF-09A-01D A32253 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32253	SRX574444	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASELF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASELF-09A-01D A32253 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32253_1_lane_dupsFlagged.bam	SRR1344838	@dbgap@:reads/SRP012000/SRS628748/SRX574444/SRR1344838/SRR1344838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASELF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASELF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASELF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASELF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASELF-09A-01D	DNA	EFO	SRS628748	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASELF-09A-01D A32253 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32253	SRX574444	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASELF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASELF-09A-01D A32253 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32253_1_lane_dupsFlagged.bam	SRR1344838	@dbgap@:reads/SRP012000/SRS628748/SRX574444/SRR1344838/SRR1344838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASELF-09A-01D_TARGET-20-PASELF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASELF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASELF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASELF-09A-01D	DNA	EFO	SRS628748	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASELF-09A-01D A32253 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32253	SRX574444	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASELF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASELF-09A-01D A32253 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32253_1_lane_dupsFlagged.bam	SRR1344838	@dbgap@:reads/SRP012000/SRS628748/SRX574444/SRR1344838/SRR1344838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASELF-09A-01D_TARGET-20-PASELF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASELF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASELF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASELF-14A-01D	DNA	EFO	SRS635925	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASELF-14A-01D A42495 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42495	SRX593886	"Specific Capture analysis of normal sample TARGET-20-PASELF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASELF-14A-01D A42495 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42495_1_lane_dupsFlagged.bam	SRR1386387	@dbgap@:reads/SRP012000/SRS635925/SRX593886/SRR1386387/SRR1386387.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASELF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASELF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASELF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASELF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASELF-14A-01D	DNA	EFO	SRS635925	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASELF-14A-01D A42495 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42495	SRX593886	"Specific Capture analysis of normal sample TARGET-20-PASELF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASELF-14A-01D A42495 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42495_1_lane_dupsFlagged.bam	SRR1386387	@dbgap@:reads/SRP012000/SRS635925/SRX593886/SRR1386387/SRR1386387.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASELF-09A-01D_TARGET-20-PASELF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASELF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASELF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASELF-14A-01D	DNA	EFO	SRS635925	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASELF-14A-01D A42495 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42495	SRX593886	"Specific Capture analysis of normal sample TARGET-20-PASELF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASELF-14A-01D A42495 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42495_1_lane_dupsFlagged.bam	SRR1386387	@dbgap@:reads/SRP012000/SRS635925/SRX593886/SRR1386387/SRR1386387.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASELF-09A-01D_TARGET-20-PASELF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASELK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASELK-03A-01D	DNA	EFO	SRS628326	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASELK-03A-01D A31256 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31256	SRX573404	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASELK-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASELK-03A-01D A31256 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31256_1_lane_dupsFlagged.bam	SRR1342676	@dbgap@:reads/SRP012000/SRS628326/SRX573404/SRR1342676/SRR1342676.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASELK-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASELK-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASELK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASELK-03A-01D	DNA	EFO	SRS628326	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASELK-03A-01D A31256 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31256	SRX573404	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASELK-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASELK-03A-01D A31256 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31256_1_lane_dupsFlagged.bam	SRR1342676	@dbgap@:reads/SRP012000/SRS628326/SRX573404/SRR1342676/SRR1342676.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASELK-03A-01D_TARGET-20-PASELK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASELK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASELK-03A-01D	DNA	EFO	SRS628326	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASELK-03A-01D A31256 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31256	SRX573404	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASELK-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASELK-03A-01D A31256 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31256_1_lane_dupsFlagged.bam	SRR1342676	@dbgap@:reads/SRP012000/SRS628326/SRX573404/SRR1342676/SRR1342676.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASELK-03A-01D_TARGET-20-PASELK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASELK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASELK-14A-01D	DNA	EFO	SRS637371	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASELK-14A-01D A42809 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42809	SRX597776	"Specific Capture analysis of normal sample TARGET-20-PASELK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASELK-14A-01D A42809 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42809_1_lane_dupsFlagged.bam	SRR1395125	@dbgap@:reads/SRP012000/SRS637371/SRX597776/SRR1395125/SRR1395125.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASELK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASELK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASELK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASELK-14A-01D	DNA	EFO	SRS637371	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASELK-14A-01D A42809 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42809	SRX597776	"Specific Capture analysis of normal sample TARGET-20-PASELK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASELK-14A-01D A42809 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42809_1_lane_dupsFlagged.bam	SRR1395125	@dbgap@:reads/SRP012000/SRS637371/SRX597776/SRR1395125/SRR1395125.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASELK-03A-01D_TARGET-20-PASELK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASELK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASELK-14A-01D	DNA	EFO	SRS637371	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASELK-14A-01D A42809 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42809	SRX597776	"Specific Capture analysis of normal sample TARGET-20-PASELK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASELK-14A-01D A42809 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42809_1_lane_dupsFlagged.bam	SRR1395125	@dbgap@:reads/SRP012000/SRS637371/SRX597776/SRR1395125/SRR1395125.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASELK-03A-01D_TARGET-20-PASELK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASENE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASENE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASENE-09A-02D	DNA	EFO	SRS628705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASENE-09A-02D A32254 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32254	SRX574398	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASENE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASENE-09A-02D A32254 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32254_1_lane_dupsFlagged.bam	SRR1344839	@dbgap@:reads/SRP012000/SRS628705/SRX574398/SRR1344839/SRR1344839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASENE-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASENE-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASENE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASENE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASENE-09A-02D	DNA	EFO	SRS628705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASENE-09A-02D A32254 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32254	SRX574398	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASENE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASENE-09A-02D A32254 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32254_1_lane_dupsFlagged.bam	SRR1344839	@dbgap@:reads/SRP012000/SRS628705/SRX574398/SRR1344839/SRR1344839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASENE-09A-02D_TARGET-20-PASENE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASENE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASENE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASENE-09A-02D	DNA	EFO	SRS628705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASENE-09A-02D A32254 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32254	SRX574398	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASENE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASENE-09A-02D A32254 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32254_1_lane_dupsFlagged.bam	SRR1344839	@dbgap@:reads/SRP012000/SRS628705/SRX574398/SRR1344839/SRR1344839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASENE-09A-02D_TARGET-20-PASENE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASENE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASENE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASENE-14A-01D	DNA	EFO	SRS635912	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASENE-14A-01D A42494 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42494	SRX593872	"Specific Capture analysis of normal sample TARGET-20-PASENE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASENE-14A-01D A42494 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42494_1_lane_dupsFlagged.bam	SRR1386343	@dbgap@:reads/SRP012000/SRS635912/SRX593872/SRR1386343/SRR1386343.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASENE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASENE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASENE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASENE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASENE-14A-01D	DNA	EFO	SRS635912	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASENE-14A-01D A42494 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42494	SRX593872	"Specific Capture analysis of normal sample TARGET-20-PASENE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASENE-14A-01D A42494 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42494_1_lane_dupsFlagged.bam	SRR1386343	@dbgap@:reads/SRP012000/SRS635912/SRX593872/SRR1386343/SRR1386343.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASENE-09A-02D_TARGET-20-PASENE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASENE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASENE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASENE-14A-01D	DNA	EFO	SRS635912	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASENE-14A-01D A42494 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42494	SRX593872	"Specific Capture analysis of normal sample TARGET-20-PASENE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASENE-14A-01D A42494 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42494_1_lane_dupsFlagged.bam	SRR1386343	@dbgap@:reads/SRP012000/SRS635912/SRX593872/SRR1386343/SRR1386343.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASENE-09A-02D_TARGET-20-PASENE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASEYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEYM-09A-01D	DNA	EFO	SRS628720	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEYM-09A-01D A32255 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32255	SRX574414	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASEYM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASEYM-09A-01D A32255 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32255_1_lane_dupsFlagged.bam	SRR1344925	@dbgap@:reads/SRP012000/SRS628720/SRX574414/SRR1344925/SRR1344925.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASEYM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASEYM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASEYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEYM-09A-01D	DNA	EFO	SRS628720	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEYM-09A-01D A32255 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32255	SRX574414	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASEYM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASEYM-09A-01D A32255 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32255_1_lane_dupsFlagged.bam	SRR1344925	@dbgap@:reads/SRP012000/SRS628720/SRX574414/SRR1344925/SRR1344925.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASEYM-09A-01D_TARGET-20-PASEYM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASEYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEYM-09A-01D	DNA	EFO	SRS628720	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEYM-09A-01D A32255 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32255	SRX574414	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASEYM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASEYM-09A-01D A32255 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32255_1_lane_dupsFlagged.bam	SRR1344925	@dbgap@:reads/SRP012000/SRS628720/SRX574414/SRR1344925/SRR1344925.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASEYM-09A-01D_TARGET-20-PASEYM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASEYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEYM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEYM-14A-01D	DNA	EFO	SRS635999	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEYM-14A-01D A42602 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42602	SRX593966	"Specific Capture analysis of normal sample TARGET-20-PASEYM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASEYM-14A-01D A42602 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42602_1_lane_dupsFlagged.bam	SRR1386501	@dbgap@:reads/SRP012000/SRS635999/SRX593966/SRR1386501/SRR1386501.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASEYM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASEYM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASEYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEYM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEYM-14A-01D	DNA	EFO	SRS635999	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEYM-14A-01D A42602 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42602	SRX593966	"Specific Capture analysis of normal sample TARGET-20-PASEYM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASEYM-14A-01D A42602 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42602_1_lane_dupsFlagged.bam	SRR1386501	@dbgap@:reads/SRP012000/SRS635999/SRX593966/SRR1386501/SRR1386501.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASEYM-09A-01D_TARGET-20-PASEYM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASEYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEYM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEYM-14A-01D	DNA	EFO	SRS635999	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEYM-14A-01D A42602 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42602	SRX593966	"Specific Capture analysis of normal sample TARGET-20-PASEYM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASEYM-14A-01D A42602 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42602_1_lane_dupsFlagged.bam	SRR1386501	@dbgap@:reads/SRP012000/SRS635999/SRX593966/SRR1386501/SRR1386501.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASEYM-09A-01D_TARGET-20-PASEYM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-02D	DNA	EFO	SRS301125	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFEW-04A-02D A42233 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42233	SRX597730	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFEW-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASFEW-04A-02D A42233 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42233_1_lane_dupsFlagged.bam	SRR1395000	@dbgap@:reads/SRP012000/SRS301125/SRX597730/SRR1395000/SRR1395000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFEW-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFEW-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-02D	DNA	EFO	SRS301125	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFEW-04A-02D A42233 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42233	SRX597730	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFEW-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASFEW-04A-02D A42233 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42233_1_lane_dupsFlagged.bam	SRR1395000	@dbgap@:reads/SRP012000/SRS301125/SRX597730/SRR1395000/SRR1395000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFEW-04A-02D_TARGET-20-PASFEW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-02D	DNA	EFO	SRS301125	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFEW-04A-02D A42233 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42233	SRX597730	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFEW-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASFEW-04A-02D A42233 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42233_1_lane_dupsFlagged.bam	SRR1395000	@dbgap@:reads/SRP012000/SRS301125/SRX597730/SRR1395000/SRR1395000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFEW-04A-02D_TARGET-20-PASFEW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-01D	DNA	EFO	SRS287509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFEW-09A-01D A32256 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32256	SRX574416	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFEW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASFEW-09A-01D A32256 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32256_1_lane_dupsFlagged.bam	SRR1344864	@dbgap@:reads/SRP012000/SRS287509/SRX574416/SRR1344864/SRR1344864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFEW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFEW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-01D	DNA	EFO	SRS287509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFEW-09A-01D A32256 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32256	SRX574416	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFEW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASFEW-09A-01D A32256 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32256_1_lane_dupsFlagged.bam	SRR1344864	@dbgap@:reads/SRP012000/SRS287509/SRX574416/SRR1344864/SRR1344864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFEW-09A-01D_TARGET-20-PASFEW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-01D	DNA	EFO	SRS287509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFEW-09A-01D A32256 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32256	SRX574416	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFEW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASFEW-09A-01D A32256 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32256_1_lane_dupsFlagged.bam	SRR1344864	@dbgap@:reads/SRP012000/SRS287509/SRX574416/SRR1344864/SRR1344864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFEW-09A-01D_TARGET-20-PASFEW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFEW-14A-01D A42637 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42637	SRX593975	"Specific Capture analysis of normal sample TARGET-20-PASFEW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASFEW-14A-01D A42637 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42637_1_lane_dupsFlagged.bam	SRR1386473	@dbgap@:reads/SRP012000/SRS160318/SRX593975/SRR1386473/SRR1386473.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFEW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFEW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFEW-14A-01D A42637 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42637	SRX593975	"Specific Capture analysis of normal sample TARGET-20-PASFEW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASFEW-14A-01D A42637 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42637_1_lane_dupsFlagged.bam	SRR1386473	@dbgap@:reads/SRP012000/SRS160318/SRX593975/SRR1386473/SRR1386473.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFEW-04A-02D_TARGET-20-PASFEW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFEW-14A-01D A42637 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42637	SRX593975	"Specific Capture analysis of normal sample TARGET-20-PASFEW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASFEW-14A-01D A42637 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42637_1_lane_dupsFlagged.bam	SRR1386473	@dbgap@:reads/SRP012000/SRS160318/SRX593975/SRR1386473/SRR1386473.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFEW-04A-02D_TARGET-20-PASFEW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFEW-14A-01D A42637 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42637	SRX593975	"Specific Capture analysis of normal sample TARGET-20-PASFEW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASFEW-14A-01D A42637 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42637_1_lane_dupsFlagged.bam	SRR1386473	@dbgap@:reads/SRP012000/SRS160318/SRX593975/SRR1386473/SRR1386473.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFEW-09A-01D_TARGET-20-PASFEW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFEW-14A-01D A42637 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42637	SRX593975	"Specific Capture analysis of normal sample TARGET-20-PASFEW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASFEW-14A-01D A42637 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42637_1_lane_dupsFlagged.bam	SRR1386473	@dbgap@:reads/SRP012000/SRS160318/SRX593975/SRR1386473/SRR1386473.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFEW-09A-01D_TARGET-20-PASFEW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFFS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFFS-04A-01D	DNA	EFO	SRS637354	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFFS-04A-01D A42213 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42213	SRX597758	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFFS-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASFFS-04A-01D A42213 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42213_1_lane_dupsFlagged.bam	SRR1394960	@dbgap@:reads/SRP012000/SRS637354/SRX597758/SRR1394960/SRR1394960.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFFS-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFFS-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFFS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFFS-04A-01D	DNA	EFO	SRS637354	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFFS-04A-01D A42213 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42213	SRX597758	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFFS-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASFFS-04A-01D A42213 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42213_1_lane_dupsFlagged.bam	SRR1394960	@dbgap@:reads/SRP012000/SRS637354/SRX597758/SRR1394960/SRR1394960.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFFS-04A-01D_TARGET-20-PASFFS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFFS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFFS-04A-01D	DNA	EFO	SRS637354	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFFS-04A-01D A42213 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42213	SRX597758	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFFS-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASFFS-04A-01D A42213 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42213_1_lane_dupsFlagged.bam	SRR1394960	@dbgap@:reads/SRP012000/SRS637354/SRX597758/SRR1394960/SRR1394960.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFFS-04A-01D_TARGET-20-PASFFS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFFS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFFS-09A-01D	DNA	EFO	SRS633635	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFFS-09A-01D A33440 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33440	SRX587929	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFFS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASFFS-09A-01D A33440 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33440_1_lane_dupsFlagged.bam	SRR1373817	@dbgap@:reads/SRP012000/SRS633635/SRX587929/SRR1373817/SRR1373817.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFFS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFFS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFFS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFFS-09A-01D	DNA	EFO	SRS633635	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFFS-09A-01D A33440 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33440	SRX587929	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFFS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASFFS-09A-01D A33440 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33440_1_lane_dupsFlagged.bam	SRR1373817	@dbgap@:reads/SRP012000/SRS633635/SRX587929/SRR1373817/SRR1373817.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFFS-09A-01D_TARGET-20-PASFFS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFFS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFFS-09A-01D	DNA	EFO	SRS633635	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFFS-09A-01D A33440 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33440	SRX587929	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFFS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASFFS-09A-01D A33440 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33440_1_lane_dupsFlagged.bam	SRR1373817	@dbgap@:reads/SRP012000/SRS633635/SRX587929/SRR1373817/SRR1373817.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFFS-09A-01D_TARGET-20-PASFFS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFFS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFFS-14A-01D	DNA	EFO	SRS635889	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFFS-14A-01D A42496 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42496	SRX593850	"Specific Capture analysis of normal sample TARGET-20-PASFFS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASFFS-14A-01D A42496 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42496_1_lane_dupsFlagged.bam	SRR1386345	@dbgap@:reads/SRP012000/SRS635889/SRX593850/SRR1386345/SRR1386345.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFFS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFFS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASFFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFFS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFFS-14A-01D	DNA	EFO	SRS635889	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFFS-14A-01D A42496 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42496	SRX593850	"Specific Capture analysis of normal sample TARGET-20-PASFFS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASFFS-14A-01D A42496 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42496_1_lane_dupsFlagged.bam	SRR1386345	@dbgap@:reads/SRP012000/SRS635889/SRX593850/SRR1386345/SRR1386345.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFFS-04A-01D_TARGET-20-PASFFS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFFS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFFS-14A-01D	DNA	EFO	SRS635889	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFFS-14A-01D A42496 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42496	SRX593850	"Specific Capture analysis of normal sample TARGET-20-PASFFS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASFFS-14A-01D A42496 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42496_1_lane_dupsFlagged.bam	SRR1386345	@dbgap@:reads/SRP012000/SRS635889/SRX593850/SRR1386345/SRR1386345.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFFS-04A-01D_TARGET-20-PASFFS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFFS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFFS-14A-01D	DNA	EFO	SRS635889	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFFS-14A-01D A42496 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42496	SRX593850	"Specific Capture analysis of normal sample TARGET-20-PASFFS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASFFS-14A-01D A42496 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42496_1_lane_dupsFlagged.bam	SRR1386345	@dbgap@:reads/SRP012000/SRS635889/SRX593850/SRR1386345/SRR1386345.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFFS-09A-01D_TARGET-20-PASFFS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFFS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFFS-14A-01D	DNA	EFO	SRS635889	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFFS-14A-01D A42496 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42496	SRX593850	"Specific Capture analysis of normal sample TARGET-20-PASFFS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASFFS-14A-01D A42496 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42496_1_lane_dupsFlagged.bam	SRR1386345	@dbgap@:reads/SRP012000/SRS635889/SRX593850/SRR1386345/SRR1386345.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFFS-09A-01D_TARGET-20-PASFFS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFFX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFFX-09A-01D	DNA	EFO	SRS635520	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFFX-09A-01D A41790 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41790	SRX593241	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFFX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASFFX-09A-01D A41790 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41790_1_lane_dupsFlagged.bam	SRR1385592	@dbgap@:reads/SRP012000/SRS635520/SRX593241/SRR1385592/SRR1385592.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFFX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFFX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFFX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFFX-09A-01D	DNA	EFO	SRS635520	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFFX-09A-01D A41790 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41790	SRX593241	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFFX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASFFX-09A-01D A41790 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41790_1_lane_dupsFlagged.bam	SRR1385592	@dbgap@:reads/SRP012000/SRS635520/SRX593241/SRR1385592/SRR1385592.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFFX-09A-01D_TARGET-20-PASFFX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFFX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFFX-09A-01D	DNA	EFO	SRS635520	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFFX-09A-01D A41790 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41790	SRX593241	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFFX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASFFX-09A-01D A41790 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41790_1_lane_dupsFlagged.bam	SRR1385592	@dbgap@:reads/SRP012000/SRS635520/SRX593241/SRR1385592/SRR1385592.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFFX-09A-01D_TARGET-20-PASFFX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFFX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFFX-14A-01D	DNA	EFO	SRS635667	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFFX-14A-01D A41614 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41614	SRX593491	"Specific Capture analysis of normal sample TARGET-20-PASFFX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFFX-14A-01D A41614 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41614_1_lane_dupsFlagged.bam	SRR1385996	@dbgap@:reads/SRP012000/SRS635667/SRX593491/SRR1385996/SRR1385996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFFX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFFX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASFFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFFX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFFX-14A-01D	DNA	EFO	SRS635667	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFFX-14A-01D A41614 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41614	SRX593491	"Specific Capture analysis of normal sample TARGET-20-PASFFX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFFX-14A-01D A41614 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41614_1_lane_dupsFlagged.bam	SRR1385996	@dbgap@:reads/SRP012000/SRS635667/SRX593491/SRR1385996/SRR1385996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFFX-09A-01D_TARGET-20-PASFFX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFFX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFFX-14A-01D	DNA	EFO	SRS635667	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFFX-14A-01D A41614 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41614	SRX593491	"Specific Capture analysis of normal sample TARGET-20-PASFFX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFFX-14A-01D A41614 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41614_1_lane_dupsFlagged.bam	SRR1385996	@dbgap@:reads/SRP012000/SRS635667/SRX593491/SRR1385996/SRR1385996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFFX-09A-01D_TARGET-20-PASFFX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFIE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFIE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFIE-09A-01D	DNA	EFO	SRS635496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFIE-09A-01D A41791 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41791	SRX593217	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFIE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASFIE-09A-01D A41791 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41791_1_lane_dupsFlagged.bam	SRR1385628	@dbgap@:reads/SRP012000/SRS635496/SRX593217/SRR1385628/SRR1385628.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFIE-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFIE-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFIE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFIE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFIE-09A-01D	DNA	EFO	SRS635496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFIE-09A-01D A41791 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41791	SRX593217	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFIE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASFIE-09A-01D A41791 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41791_1_lane_dupsFlagged.bam	SRR1385628	@dbgap@:reads/SRP012000/SRS635496/SRX593217/SRR1385628/SRR1385628.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFIE-09A-01D_TARGET-20-PASFIE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFIE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFIE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFIE-09A-01D	DNA	EFO	SRS635496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFIE-09A-01D A41791 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41791	SRX593217	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFIE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASFIE-09A-01D A41791 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41791_1_lane_dupsFlagged.bam	SRR1385628	@dbgap@:reads/SRP012000/SRS635496/SRX593217/SRR1385628/SRR1385628.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFIE-09A-01D_TARGET-20-PASFIE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFIE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFIE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFIE-14A-01D	DNA	EFO	SRS635633	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFIE-14A-01D A41615 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41615	SRX593455	"Specific Capture analysis of normal sample TARGET-20-PASFIE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFIE-14A-01D A41615 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41615_1_lane_dupsFlagged.bam	SRR1385937	@dbgap@:reads/SRP012000/SRS635633/SRX593455/SRR1385937/SRR1385937.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFIE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFIE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASFIE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFIE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFIE-14A-01D	DNA	EFO	SRS635633	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFIE-14A-01D A41615 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41615	SRX593455	"Specific Capture analysis of normal sample TARGET-20-PASFIE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFIE-14A-01D A41615 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41615_1_lane_dupsFlagged.bam	SRR1385937	@dbgap@:reads/SRP012000/SRS635633/SRX593455/SRR1385937/SRR1385937.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFIE-09A-01D_TARGET-20-PASFIE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFIE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFIE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFIE-14A-01D	DNA	EFO	SRS635633	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFIE-14A-01D A41615 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41615	SRX593455	"Specific Capture analysis of normal sample TARGET-20-PASFIE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFIE-14A-01D A41615 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41615_1_lane_dupsFlagged.bam	SRR1385937	@dbgap@:reads/SRP012000/SRS635633/SRX593455/SRR1385937/SRR1385937.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFIE-09A-01D_TARGET-20-PASFIE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFIT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFIT-09A-02D	DNA	EFO	SRS628965	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFIT-09A-02D A32257 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32257	SRX575021	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFIT-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFIT-09A-02D A32257 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32257_1_lane_dupsFlagged.bam	SRR1346139	@dbgap@:reads/SRP012000/SRS628965/SRX575021/SRR1346139/SRR1346139.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFIT-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFIT-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFIT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFIT-09A-02D	DNA	EFO	SRS628965	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFIT-09A-02D A32257 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32257	SRX575021	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFIT-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFIT-09A-02D A32257 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32257_1_lane_dupsFlagged.bam	SRR1346139	@dbgap@:reads/SRP012000/SRS628965/SRX575021/SRR1346139/SRR1346139.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFIT-09A-02D_TARGET-20-PASFIT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFIT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFIT-09A-02D	DNA	EFO	SRS628965	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFIT-09A-02D A32257 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32257	SRX575021	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFIT-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFIT-09A-02D A32257 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32257_1_lane_dupsFlagged.bam	SRR1346139	@dbgap@:reads/SRP012000/SRS628965/SRX575021/SRR1346139/SRR1346139.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFIT-09A-02D_TARGET-20-PASFIT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFIT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFIT-14A-01D	DNA	EFO	SRS635715	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFIT-14A-01D A41613 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41613	SRX593539	"Specific Capture analysis of normal sample TARGET-20-PASFIT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFIT-14A-01D A41613 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41613_1_lane_dupsFlagged.bam	SRR1385978	@dbgap@:reads/SRP012000/SRS635715/SRX593539/SRR1385978/SRR1385978.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFIT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFIT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASFIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFIT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFIT-14A-01D	DNA	EFO	SRS635715	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFIT-14A-01D A41613 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41613	SRX593539	"Specific Capture analysis of normal sample TARGET-20-PASFIT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFIT-14A-01D A41613 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41613_1_lane_dupsFlagged.bam	SRR1385978	@dbgap@:reads/SRP012000/SRS635715/SRX593539/SRR1385978/SRR1385978.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFIT-09A-02D_TARGET-20-PASFIT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFIT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFIT-14A-01D	DNA	EFO	SRS635715	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFIT-14A-01D A41613 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41613	SRX593539	"Specific Capture analysis of normal sample TARGET-20-PASFIT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFIT-14A-01D A41613 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41613_1_lane_dupsFlagged.bam	SRR1385978	@dbgap@:reads/SRP012000/SRS635715/SRX593539/SRR1385978/SRR1385978.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFIT-09A-02D_TARGET-20-PASFIT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-03A-01D	DNA	EFO	SRS628902	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFJB-03A-01D A32258 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32258	SRX574958	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFJB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFJB-03A-01D A32258 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32258_1_lane_dupsFlagged.bam	SRR1346160	@dbgap@:reads/SRP012000/SRS628902/SRX574958/SRR1346160/SRR1346160.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFJB-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFJB-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-03A-01D	DNA	EFO	SRS628902	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFJB-03A-01D A32258 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32258	SRX574958	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFJB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFJB-03A-01D A32258 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32258_1_lane_dupsFlagged.bam	SRR1346160	@dbgap@:reads/SRP012000/SRS628902/SRX574958/SRR1346160/SRR1346160.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFJB-03A-01D_TARGET-20-PASFJB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-03A-01D	DNA	EFO	SRS628902	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFJB-03A-01D A32258 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32258	SRX574958	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFJB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFJB-03A-01D A32258 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32258_1_lane_dupsFlagged.bam	SRR1346160	@dbgap@:reads/SRP012000/SRS628902/SRX574958/SRR1346160/SRR1346160.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFJB-03A-01D_TARGET-20-PASFJB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-14A-01D	DNA	EFO	SRS635962	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFJB-14A-01D A42635 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42635	SRX593924	"Specific Capture analysis of normal sample TARGET-20-PASFJB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASFJB-14A-01D A42635 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42635_1_lane_dupsFlagged.bam	SRR1386488	@dbgap@:reads/SRP012000/SRS635962/SRX593924/SRR1386488/SRR1386488.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFJB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFJB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-14A-01D	DNA	EFO	SRS635962	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFJB-14A-01D A42635 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42635	SRX593924	"Specific Capture analysis of normal sample TARGET-20-PASFJB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASFJB-14A-01D A42635 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42635_1_lane_dupsFlagged.bam	SRR1386488	@dbgap@:reads/SRP012000/SRS635962/SRX593924/SRR1386488/SRR1386488.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFJB-03A-01D_TARGET-20-PASFJB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-14A-01D	DNA	EFO	SRS635962	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFJB-14A-01D A42635 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42635	SRX593924	"Specific Capture analysis of normal sample TARGET-20-PASFJB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASFJB-14A-01D A42635 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42635_1_lane_dupsFlagged.bam	SRR1386488	@dbgap@:reads/SRP012000/SRS635962/SRX593924/SRR1386488/SRR1386488.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFJB-03A-01D_TARGET-20-PASFJB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJJ-09A-01D	DNA	EFO	SRS628285	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFJJ-09A-01D A31229 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31229	SRX573341	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFJJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASFJJ-09A-01D A31229 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31229_1_lane_dupsFlagged.bam	SRR1342615	@dbgap@:reads/SRP012000/SRS628285/SRX573341/SRR1342615/SRR1342615.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFJJ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFJJ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJJ-09A-01D	DNA	EFO	SRS628285	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFJJ-09A-01D A31229 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31229	SRX573341	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFJJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASFJJ-09A-01D A31229 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31229_1_lane_dupsFlagged.bam	SRR1342615	@dbgap@:reads/SRP012000/SRS628285/SRX573341/SRR1342615/SRR1342615.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFJJ-09A-01D_TARGET-20-PASFJJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJJ-09A-01D	DNA	EFO	SRS628285	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFJJ-09A-01D A31229 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31229	SRX573341	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFJJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASFJJ-09A-01D A31229 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31229_1_lane_dupsFlagged.bam	SRR1342615	@dbgap@:reads/SRP012000/SRS628285/SRX573341/SRR1342615/SRR1342615.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFJJ-09A-01D_TARGET-20-PASFJJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFJJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJJ-14A-01D	DNA	EFO	SRS635644	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFJJ-14A-01D A41612 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41612	SRX593467	"Specific Capture analysis of normal sample TARGET-20-PASFJJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFJJ-14A-01D A41612 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41612_1_lane_dupsFlagged.bam	SRR1386009	@dbgap@:reads/SRP012000/SRS635644/SRX593467/SRR1386009/SRR1386009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFJJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFJJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFJJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJJ-14A-01D	DNA	EFO	SRS635644	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFJJ-14A-01D A41612 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41612	SRX593467	"Specific Capture analysis of normal sample TARGET-20-PASFJJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFJJ-14A-01D A41612 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41612_1_lane_dupsFlagged.bam	SRR1386009	@dbgap@:reads/SRP012000/SRS635644/SRX593467/SRR1386009/SRR1386009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFJJ-09A-01D_TARGET-20-PASFJJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFJJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJJ-14A-01D	DNA	EFO	SRS635644	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFJJ-14A-01D A41612 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41612	SRX593467	"Specific Capture analysis of normal sample TARGET-20-PASFJJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFJJ-14A-01D A41612 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41612_1_lane_dupsFlagged.bam	SRR1386009	@dbgap@:reads/SRP012000/SRS635644/SRX593467/SRR1386009/SRR1386009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFJJ-09A-01D_TARGET-20-PASFJJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLG-09A-02D	DNA	EFO	SRS628962	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLG-09A-02D A32259 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32259	SRX575019	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFLG-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFLG-09A-02D A32259 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32259_1_lane_dupsFlagged.bam	SRR1346133	@dbgap@:reads/SRP012000/SRS628962/SRX575019/SRR1346133/SRR1346133.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFLG-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFLG-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLG-09A-02D	DNA	EFO	SRS628962	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLG-09A-02D A32259 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32259	SRX575019	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFLG-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFLG-09A-02D A32259 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32259_1_lane_dupsFlagged.bam	SRR1346133	@dbgap@:reads/SRP012000/SRS628962/SRX575019/SRR1346133/SRR1346133.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFLG-09A-02D_TARGET-20-PASFLG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLG-09A-02D	DNA	EFO	SRS628962	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLG-09A-02D A32259 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32259	SRX575019	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFLG-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFLG-09A-02D A32259 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32259_1_lane_dupsFlagged.bam	SRR1346133	@dbgap@:reads/SRP012000/SRS628962/SRX575019/SRR1346133/SRR1346133.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFLG-09A-02D_TARGET-20-PASFLG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLG-14A-01D	DNA	EFO	SRS635662	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLG-14A-01D A41616 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41616	SRX593486	"Specific Capture analysis of normal sample TARGET-20-PASFLG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFLG-14A-01D A41616 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41616_1_lane_dupsFlagged.bam	SRR1385962	@dbgap@:reads/SRP012000/SRS635662/SRX593486/SRR1385962/SRR1385962.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFLG-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFLG-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLG-14A-01D	DNA	EFO	SRS635662	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLG-14A-01D A41616 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41616	SRX593486	"Specific Capture analysis of normal sample TARGET-20-PASFLG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFLG-14A-01D A41616 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41616_1_lane_dupsFlagged.bam	SRR1385962	@dbgap@:reads/SRP012000/SRS635662/SRX593486/SRR1385962/SRR1385962.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFLG-09A-02D_TARGET-20-PASFLG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLG-14A-01D	DNA	EFO	SRS635662	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLG-14A-01D A41616 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41616	SRX593486	"Specific Capture analysis of normal sample TARGET-20-PASFLG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFLG-14A-01D A41616 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41616_1_lane_dupsFlagged.bam	SRR1385962	@dbgap@:reads/SRP012000/SRS635662/SRX593486/SRR1385962/SRR1385962.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFLG-09A-02D_TARGET-20-PASFLG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-04A-01D	DNA	EFO	SRS301127	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLM-04A-01D A42276 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42276	SRX597684	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFLM-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASFLM-04A-01D A42276 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42276_1_lane_dupsFlagged.bam	SRR1394961	@dbgap@:reads/SRP012000/SRS301127/SRX597684/SRR1394961/SRR1394961.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFLM-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFLM-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-04A-01D	DNA	EFO	SRS301127	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLM-04A-01D A42276 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42276	SRX597684	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFLM-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASFLM-04A-01D A42276 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42276_1_lane_dupsFlagged.bam	SRR1394961	@dbgap@:reads/SRP012000/SRS301127/SRX597684/SRR1394961/SRR1394961.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFLM-04A-01D_TARGET-20-PASFLM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-04A-01D	DNA	EFO	SRS301127	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLM-04A-01D A42276 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42276	SRX597684	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFLM-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASFLM-04A-01D A42276 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42276_1_lane_dupsFlagged.bam	SRR1394961	@dbgap@:reads/SRP012000/SRS301127/SRX597684/SRR1394961/SRR1394961.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFLM-04A-01D_TARGET-20-PASFLM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-02D	DNA	EFO	SRS635582	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLM-09A-02D A41949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41949	SRX593401	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFLM-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASFLM-09A-02D A41949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41949_1_lane_dupsFlagged.bam	SRR1385867	@dbgap@:reads/SRP012000/SRS635582/SRX593401/SRR1385867/SRR1385867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFLM-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFLM-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-02D	DNA	EFO	SRS635582	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLM-09A-02D A41949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41949	SRX593401	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFLM-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASFLM-09A-02D A41949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41949_1_lane_dupsFlagged.bam	SRR1385867	@dbgap@:reads/SRP012000/SRS635582/SRX593401/SRR1385867/SRR1385867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFLM-09A-02D_TARGET-20-PASFLM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-02D	DNA	EFO	SRS635582	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLM-09A-02D A41949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41949	SRX593401	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFLM-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASFLM-09A-02D A41949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41949_1_lane_dupsFlagged.bam	SRR1385867	@dbgap@:reads/SRP012000/SRS635582/SRX593401/SRR1385867/SRR1385867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFLM-09A-02D_TARGET-20-PASFLM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLM-14A-01D A42946 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42946	SRX597878	"Specific Capture analysis of normal sample TARGET-20-PASFLM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASFLM-14A-01D A42946 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42946_1_lane_dupsFlagged.bam	SRR1395211	@dbgap@:reads/SRP012000/SRS301129/SRX597878/SRR1395211/SRR1395211.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFLM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFLM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLM-14A-01D A42946 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42946	SRX597878	"Specific Capture analysis of normal sample TARGET-20-PASFLM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASFLM-14A-01D A42946 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42946_1_lane_dupsFlagged.bam	SRR1395211	@dbgap@:reads/SRP012000/SRS301129/SRX597878/SRR1395211/SRR1395211.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFLM-04A-01D_TARGET-20-PASFLM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLM-14A-01D A42946 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42946	SRX597878	"Specific Capture analysis of normal sample TARGET-20-PASFLM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASFLM-14A-01D A42946 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42946_1_lane_dupsFlagged.bam	SRR1395211	@dbgap@:reads/SRP012000/SRS301129/SRX597878/SRR1395211/SRR1395211.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFLM-04A-01D_TARGET-20-PASFLM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLM-14A-01D A42946 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42946	SRX597878	"Specific Capture analysis of normal sample TARGET-20-PASFLM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASFLM-14A-01D A42946 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42946_1_lane_dupsFlagged.bam	SRR1395211	@dbgap@:reads/SRP012000/SRS301129/SRX597878/SRR1395211/SRR1395211.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFLM-09A-02D_TARGET-20-PASFLM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-14A-01D	DNA	EFO	SRS301129	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLM-14A-01D A42946 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42946	SRX597878	"Specific Capture analysis of normal sample TARGET-20-PASFLM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASFLM-14A-01D A42946 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42946_1_lane_dupsFlagged.bam	SRR1395211	@dbgap@:reads/SRP012000/SRS301129/SRX597878/SRR1395211/SRR1395211.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFLM-09A-02D_TARGET-20-PASFLM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFLW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLW-09A-01D	DNA	EFO	SRS635470	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLW-09A-01D A41792 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41792	SRX593192	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFLW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFLW-09A-01D A41792 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41792_1_lane_dupsFlagged.bam	SRR1385666	@dbgap@:reads/SRP012000/SRS635470/SRX593192/SRR1385666/SRR1385666.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFLW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFLW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFMX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFMX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFMX-09A-01D	DNA	EFO	SRS628278	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFMX-09A-01D A31230 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31230	SRX573333	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFMX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASFMX-09A-01D A31230 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31230_1_lane_dupsFlagged.bam	SRR1342688	@dbgap@:reads/SRP012000/SRS628278/SRX573333/SRR1342688/SRR1342688.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFMX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFMX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFNP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFNP-09A-01D	DNA	EFO	SRS628317	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFNP-09A-01D A31257 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31257	SRX573391	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFNP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASFNP-09A-01D A31257 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31257_1_lane_dupsFlagged.bam	SRR1342665	@dbgap@:reads/SRP012000/SRS628317/SRX573391/SRR1342665/SRR1342665.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFNP-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFNP-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFNP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFNP-09A-01D	DNA	EFO	SRS628317	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFNP-09A-01D A31257 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31257	SRX573391	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFNP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASFNP-09A-01D A31257 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31257_1_lane_dupsFlagged.bam	SRR1342665	@dbgap@:reads/SRP012000/SRS628317/SRX573391/SRR1342665/SRR1342665.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFNP-09A-01D_TARGET-20-PASFNP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFNP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFNP-09A-01D	DNA	EFO	SRS628317	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFNP-09A-01D A31257 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31257	SRX573391	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFNP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASFNP-09A-01D A31257 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31257_1_lane_dupsFlagged.bam	SRR1342665	@dbgap@:reads/SRP012000/SRS628317/SRX573391/SRR1342665/SRR1342665.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFNP-09A-01D_TARGET-20-PASFNP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFNP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFNP-14A-01D	DNA	EFO	SRS636018	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFNP-14A-01D A42645 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42645	SRX593991	"Specific Capture analysis of normal sample TARGET-20-PASFNP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASFNP-14A-01D A42645 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42645_1_lane_dupsFlagged.bam	SRR1386443	@dbgap@:reads/SRP012000/SRS636018/SRX593991/SRR1386443/SRR1386443.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFNP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFNP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASFNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFNP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFNP-14A-01D	DNA	EFO	SRS636018	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFNP-14A-01D A42645 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42645	SRX593991	"Specific Capture analysis of normal sample TARGET-20-PASFNP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASFNP-14A-01D A42645 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42645_1_lane_dupsFlagged.bam	SRR1386443	@dbgap@:reads/SRP012000/SRS636018/SRX593991/SRR1386443/SRR1386443.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFNP-09A-01D_TARGET-20-PASFNP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFNP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFNP-14A-01D	DNA	EFO	SRS636018	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFNP-14A-01D A42645 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42645	SRX593991	"Specific Capture analysis of normal sample TARGET-20-PASFNP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASFNP-14A-01D A42645 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42645_1_lane_dupsFlagged.bam	SRR1386443	@dbgap@:reads/SRP012000/SRS636018/SRX593991/SRR1386443/SRR1386443.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFNP-09A-01D_TARGET-20-PASFNP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFRD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFRD-09A-01D	DNA	EFO	SRS635429	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFRD-09A-01D A41793 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41793	SRX593151	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFRD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFRD-09A-01D A41793 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41793_1_lane_dupsFlagged.bam	SRR1385665	@dbgap@:reads/SRP012000/SRS635429/SRX593151/SRR1385665/SRR1385665.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFRD-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFRD-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFRD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFRD-09A-01D	DNA	EFO	SRS635429	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFRD-09A-01D A41793 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41793	SRX593151	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFRD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFRD-09A-01D A41793 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41793_1_lane_dupsFlagged.bam	SRR1385665	@dbgap@:reads/SRP012000/SRS635429/SRX593151/SRR1385665/SRR1385665.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFRD-09A-01D_TARGET-20-PASFRD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFRD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFRD-09A-01D	DNA	EFO	SRS635429	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFRD-09A-01D A41793 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41793	SRX593151	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFRD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFRD-09A-01D A41793 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41793_1_lane_dupsFlagged.bam	SRR1385665	@dbgap@:reads/SRP012000/SRS635429/SRX593151/SRR1385665/SRR1385665.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFRD-09A-01D_TARGET-20-PASFRD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFRD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFRD-14A-01D	DNA	EFO	SRS635970	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFRD-14A-01D A42597 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42597	SRX593931	"Specific Capture analysis of normal sample TARGET-20-PASFRD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASFRD-14A-01D A42597 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42597_1_lane_dupsFlagged.bam	SRR1386412	@dbgap@:reads/SRP012000/SRS635970/SRX593931/SRR1386412/SRR1386412.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFRD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFRD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASFRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFRD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFRD-14A-01D	DNA	EFO	SRS635970	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFRD-14A-01D A42597 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42597	SRX593931	"Specific Capture analysis of normal sample TARGET-20-PASFRD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASFRD-14A-01D A42597 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42597_1_lane_dupsFlagged.bam	SRR1386412	@dbgap@:reads/SRP012000/SRS635970/SRX593931/SRR1386412/SRR1386412.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFRD-09A-01D_TARGET-20-PASFRD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFRD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFRD-14A-01D	DNA	EFO	SRS635970	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFRD-14A-01D A42597 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42597	SRX593931	"Specific Capture analysis of normal sample TARGET-20-PASFRD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASFRD-14A-01D A42597 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42597_1_lane_dupsFlagged.bam	SRR1386412	@dbgap@:reads/SRP012000/SRS635970/SRX593931/SRR1386412/SRR1386412.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFRD-09A-01D_TARGET-20-PASFRD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFTR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFTR-03A-01D	DNA	EFO	SRS628951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFTR-03A-01D A32260 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32260	SRX575008	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFTR-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFTR-03A-01D A32260 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32260_1_lane_dupsFlagged.bam	SRR1346165	@dbgap@:reads/SRP012000/SRS628951/SRX575008/SRR1346165/SRR1346165.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFTR-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFTR-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFTR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFTR-03A-01D	DNA	EFO	SRS628951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFTR-03A-01D A32260 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32260	SRX575008	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFTR-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFTR-03A-01D A32260 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32260_1_lane_dupsFlagged.bam	SRR1346165	@dbgap@:reads/SRP012000/SRS628951/SRX575008/SRR1346165/SRR1346165.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFTR-03A-01D_TARGET-20-PASFTR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFTR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFTR-03A-01D	DNA	EFO	SRS628951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFTR-03A-01D A32260 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32260	SRX575008	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFTR-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFTR-03A-01D A32260 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32260_1_lane_dupsFlagged.bam	SRR1346165	@dbgap@:reads/SRP012000/SRS628951/SRX575008/SRR1346165/SRR1346165.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFTR-03A-01D_TARGET-20-PASFTR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFTR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFTR-14A-01D	DNA	EFO	SRS635672	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFTR-14A-01D A41619 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41619	SRX593496	"Specific Capture analysis of normal sample TARGET-20-PASFTR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFTR-14A-01D A41619 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41619_1_lane_dupsFlagged.bam	SRR1385967	@dbgap@:reads/SRP012000/SRS635672/SRX593496/SRR1385967/SRR1385967.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFTR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFTR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFTR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFTR-14A-01D	DNA	EFO	SRS635672	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFTR-14A-01D A41619 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41619	SRX593496	"Specific Capture analysis of normal sample TARGET-20-PASFTR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFTR-14A-01D A41619 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41619_1_lane_dupsFlagged.bam	SRR1385967	@dbgap@:reads/SRP012000/SRS635672/SRX593496/SRR1385967/SRR1385967.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFTR-03A-01D_TARGET-20-PASFTR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFTR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFTR-14A-01D	DNA	EFO	SRS635672	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFTR-14A-01D A41619 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41619	SRX593496	"Specific Capture analysis of normal sample TARGET-20-PASFTR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFTR-14A-01D A41619 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41619_1_lane_dupsFlagged.bam	SRR1385967	@dbgap@:reads/SRP012000/SRS635672/SRX593496/SRR1385967/SRR1385967.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFTR-03A-01D_TARGET-20-PASFTR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFVP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFVP-09A-01D	DNA	EFO	SRS633652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFVP-09A-01D A33418 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33418	SRX587946	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFVP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFVP-09A-01D A33418 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33418_1_lane_dupsFlagged.bam	SRR1373789	@dbgap@:reads/SRP012000/SRS633652/SRX587946/SRR1373789/SRR1373789.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFVP-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFVP-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFVP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFVP-09A-01D	DNA	EFO	SRS633652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFVP-09A-01D A33418 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33418	SRX587946	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFVP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFVP-09A-01D A33418 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33418_1_lane_dupsFlagged.bam	SRR1373789	@dbgap@:reads/SRP012000/SRS633652/SRX587946/SRR1373789/SRR1373789.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFVP-09A-01D_TARGET-20-PASFVP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFVP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFVP-09A-01D	DNA	EFO	SRS633652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFVP-09A-01D A33418 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33418	SRX587946	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFVP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFVP-09A-01D A33418 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33418_1_lane_dupsFlagged.bam	SRR1373789	@dbgap@:reads/SRP012000/SRS633652/SRX587946/SRR1373789/SRR1373789.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFVP-09A-01D_TARGET-20-PASFVP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFVP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFVP-14A-01D	DNA	EFO	SRS635658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFVP-14A-01D A41617 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41617	SRX593483	"Specific Capture analysis of normal sample TARGET-20-PASFVP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFVP-14A-01D A41617 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41617_1_lane_dupsFlagged.bam	SRR1386007	@dbgap@:reads/SRP012000/SRS635658/SRX593483/SRR1386007/SRR1386007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFVP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFVP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFVP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFVP-14A-01D	DNA	EFO	SRS635658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFVP-14A-01D A41617 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41617	SRX593483	"Specific Capture analysis of normal sample TARGET-20-PASFVP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFVP-14A-01D A41617 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41617_1_lane_dupsFlagged.bam	SRR1386007	@dbgap@:reads/SRP012000/SRS635658/SRX593483/SRR1386007/SRR1386007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFVP-09A-01D_TARGET-20-PASFVP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFVP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFVP-14A-01D	DNA	EFO	SRS635658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFVP-14A-01D A41617 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41617	SRX593483	"Specific Capture analysis of normal sample TARGET-20-PASFVP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFVP-14A-01D A41617 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41617_1_lane_dupsFlagged.bam	SRR1386007	@dbgap@:reads/SRP012000/SRS635658/SRX593483/SRR1386007/SRR1386007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFVP-09A-01D_TARGET-20-PASFVP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFWI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFWI-03A-01D	DNA	EFO	SRS633643	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFWI-03A-01D A33441 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33441	SRX587937	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFWI-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASFWI-03A-01D A33441 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33441_1_lane_dupsFlagged.bam	SRR1373787	@dbgap@:reads/SRP012000/SRS633643/SRX587937/SRR1373787/SRR1373787.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFWI-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFWI-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFWI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFWI-03A-01D	DNA	EFO	SRS633643	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFWI-03A-01D A33441 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33441	SRX587937	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFWI-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASFWI-03A-01D A33441 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33441_1_lane_dupsFlagged.bam	SRR1373787	@dbgap@:reads/SRP012000/SRS633643/SRX587937/SRR1373787/SRR1373787.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFWI-03A-01D_TARGET-20-PASFWI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFWI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFWI-03A-01D	DNA	EFO	SRS633643	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFWI-03A-01D A33441 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33441	SRX587937	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFWI-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASFWI-03A-01D A33441 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33441_1_lane_dupsFlagged.bam	SRR1373787	@dbgap@:reads/SRP012000/SRS633643/SRX587937/SRR1373787/SRR1373787.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFWI-03A-01D_TARGET-20-PASFWI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFWI-14A-01D	DNA	EFO	SRS637357	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFWI-14A-01D A42810 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42810	SRX597762	"Specific Capture analysis of normal sample TARGET-20-PASFWI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASFWI-14A-01D A42810 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42810_1_lane_dupsFlagged.bam	SRR1395093	@dbgap@:reads/SRP012000/SRS637357/SRX597762/SRR1395093/SRR1395093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFWI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFWI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASFWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFWI-14A-01D	DNA	EFO	SRS637357	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFWI-14A-01D A42810 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42810	SRX597762	"Specific Capture analysis of normal sample TARGET-20-PASFWI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASFWI-14A-01D A42810 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42810_1_lane_dupsFlagged.bam	SRR1395093	@dbgap@:reads/SRP012000/SRS637357/SRX597762/SRR1395093/SRR1395093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFWI-03A-01D_TARGET-20-PASFWI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFWI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFWI-14A-01D	DNA	EFO	SRS637357	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFWI-14A-01D A42810 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42810	SRX597762	"Specific Capture analysis of normal sample TARGET-20-PASFWI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASFWI-14A-01D A42810 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42810_1_lane_dupsFlagged.bam	SRR1395093	@dbgap@:reads/SRP012000/SRS637357/SRX597762/SRR1395093/SRR1395093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFWI-03A-01D_TARGET-20-PASFWI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFXF-09A-01D	DNA	EFO	SRS635428	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFXF-09A-01D A41794 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41794	SRX593150	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFXF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFXF-09A-01D A41794 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41794_1_lane_dupsFlagged.bam	SRR1385612	@dbgap@:reads/SRP012000/SRS635428/SRX593150/SRR1385612/SRR1385612.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFXF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFXF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFYF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFYF-03A-01D	DNA	EFO	SRS628909	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFYF-03A-01D A32261 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32261	SRX574965	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFYF-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFYF-03A-01D A32261 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32261_1_lane_dupsFlagged.bam	SRR1346204	@dbgap@:reads/SRP012000/SRS628909/SRX574965/SRR1346204/SRR1346204.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFYF-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFYF-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFYF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFYF-03A-01D	DNA	EFO	SRS628909	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFYF-03A-01D A32261 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32261	SRX574965	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFYF-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFYF-03A-01D A32261 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32261_1_lane_dupsFlagged.bam	SRR1346204	@dbgap@:reads/SRP012000/SRS628909/SRX574965/SRR1346204/SRR1346204.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFYF-03A-01D_TARGET-20-PASFYF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFYF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFYF-03A-01D	DNA	EFO	SRS628909	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFYF-03A-01D A32261 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32261	SRX574965	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFYF-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFYF-03A-01D A32261 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32261_1_lane_dupsFlagged.bam	SRR1346204	@dbgap@:reads/SRP012000/SRS628909/SRX574965/SRR1346204/SRR1346204.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFYF-03A-01D_TARGET-20-PASFYF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFYF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFYF-14A-01D	DNA	EFO	SRS635718	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFYF-14A-01D A41618 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41618	SRX593542	"Specific Capture analysis of normal sample TARGET-20-PASFYF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFYF-14A-01D A41618 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41618_1_lane_dupsFlagged.bam	SRR1385927	@dbgap@:reads/SRP012000/SRS635718/SRX593542/SRR1385927/SRR1385927.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFYF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFYF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASFYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFYF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFYF-14A-01D	DNA	EFO	SRS635718	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFYF-14A-01D A41618 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41618	SRX593542	"Specific Capture analysis of normal sample TARGET-20-PASFYF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFYF-14A-01D A41618 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41618_1_lane_dupsFlagged.bam	SRR1385927	@dbgap@:reads/SRP012000/SRS635718/SRX593542/SRR1385927/SRR1385927.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFYF-03A-01D_TARGET-20-PASFYF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFYF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFYF-14A-01D	DNA	EFO	SRS635718	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFYF-14A-01D A41618 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41618	SRX593542	"Specific Capture analysis of normal sample TARGET-20-PASFYF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASFYF-14A-01D A41618 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41618_1_lane_dupsFlagged.bam	SRR1385927	@dbgap@:reads/SRP012000/SRS635718/SRX593542/SRR1385927/SRR1385927.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFYF-03A-01D_TARGET-20-PASFYF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFZB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFZB-09A-01D	DNA	EFO	SRS635594	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFZB-09A-01D A41928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41928	SRX593413	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFZB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASFZB-09A-01D A41928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41928_1_lane_dupsFlagged.bam	SRR1385918	@dbgap@:reads/SRP012000/SRS635594/SRX593413/SRR1385918/SRR1385918.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFZB-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFZB-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFZB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFZB-09A-01D	DNA	EFO	SRS635594	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFZB-09A-01D A41928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41928	SRX593413	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFZB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASFZB-09A-01D A41928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41928_1_lane_dupsFlagged.bam	SRR1385918	@dbgap@:reads/SRP012000/SRS635594/SRX593413/SRR1385918/SRR1385918.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFZB-09A-01D_TARGET-20-PASFZB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFZB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFZB-09A-01D	DNA	EFO	SRS635594	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFZB-09A-01D A41928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41928	SRX593413	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFZB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASFZB-09A-01D A41928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41928_1_lane_dupsFlagged.bam	SRR1385918	@dbgap@:reads/SRP012000/SRS635594/SRX593413/SRR1385918/SRR1385918.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFZB-09A-01D_TARGET-20-PASFZB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFZB-14A-01D	DNA	EFO	SRS637419	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFZB-14A-01D A42811 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42811	SRX597828	"Specific Capture analysis of normal sample TARGET-20-PASFZB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASFZB-14A-01D A42811 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42811_1_lane_dupsFlagged.bam	SRR1395118	@dbgap@:reads/SRP012000/SRS637419/SRX597828/SRR1395118/SRR1395118.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFZB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFZB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASFZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFZB-14A-01D	DNA	EFO	SRS637419	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFZB-14A-01D A42811 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42811	SRX597828	"Specific Capture analysis of normal sample TARGET-20-PASFZB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASFZB-14A-01D A42811 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42811_1_lane_dupsFlagged.bam	SRR1395118	@dbgap@:reads/SRP012000/SRS637419/SRX597828/SRR1395118/SRR1395118.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFZB-09A-01D_TARGET-20-PASFZB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASFZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFZB-14A-01D	DNA	EFO	SRS637419	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFZB-14A-01D A42811 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42811	SRX597828	"Specific Capture analysis of normal sample TARGET-20-PASFZB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASFZB-14A-01D A42811 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42811_1_lane_dupsFlagged.bam	SRR1395118	@dbgap@:reads/SRP012000/SRS637419/SRX597828/SRR1395118/SRR1395118.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFZB-09A-01D_TARGET-20-PASFZB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFZN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFZN-04A-01D	DNA	EFO	SRS637319	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFZN-04A-01D A42194 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42194	SRX597692	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFZN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASFZN-04A-01D A42194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42194_1_lane_dupsFlagged.bam	SRR1394999	@dbgap@:reads/SRP012000/SRS637319/SRX597692/SRR1394999/SRR1394999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFZN-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFZN-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFZN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFZN-04A-01D	DNA	EFO	SRS637319	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFZN-04A-01D A42194 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42194	SRX597692	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFZN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASFZN-04A-01D A42194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42194_1_lane_dupsFlagged.bam	SRR1394999	@dbgap@:reads/SRP012000/SRS637319/SRX597692/SRR1394999/SRR1394999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFZN-04A-01D_TARGET-20-PASFZN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFZN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFZN-04A-01D	DNA	EFO	SRS637319	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFZN-04A-01D A42194 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42194	SRX597692	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFZN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASFZN-04A-01D A42194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42194_1_lane_dupsFlagged.bam	SRR1394999	@dbgap@:reads/SRP012000/SRS637319/SRX597692/SRR1394999/SRR1394999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFZN-04A-01D_TARGET-20-PASFZN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFZN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFZN-09A-01D	DNA	EFO	SRS628949	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFZN-09A-01D A32262 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32262	SRX575006	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFZN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFZN-09A-01D A32262 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32262_1_lane_dupsFlagged.bam	SRR1346201	@dbgap@:reads/SRP012000/SRS628949/SRX575006/SRR1346201/SRR1346201.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFZN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFZN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASFZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFZN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFZN-09A-01D	DNA	EFO	SRS628949	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFZN-09A-01D A32262 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32262	SRX575006	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFZN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFZN-09A-01D A32262 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32262_1_lane_dupsFlagged.bam	SRR1346201	@dbgap@:reads/SRP012000/SRS628949/SRX575006/SRR1346201/SRR1346201.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFZN-09A-01D_TARGET-20-PASFZN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFZN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFZN-09A-01D	DNA	EFO	SRS628949	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFZN-09A-01D A32262 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32262	SRX575006	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASFZN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASFZN-09A-01D A32262 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32262_1_lane_dupsFlagged.bam	SRR1346201	@dbgap@:reads/SRP012000/SRS628949/SRX575006/SRR1346201/SRR1346201.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFZN-09A-01D_TARGET-20-PASFZN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFZN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFZN-14A-01D	DNA	EFO	SRS635939	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFZN-14A-01D A42550 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42550	SRX593899	"Specific Capture analysis of normal sample TARGET-20-PASFZN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASFZN-14A-01D A42550 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42550_1_lane_dupsFlagged.bam	SRR1386371	@dbgap@:reads/SRP012000/SRS635939/SRX593899/SRR1386371/SRR1386371.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASFZN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASFZN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASFZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFZN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFZN-14A-01D	DNA	EFO	SRS635939	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFZN-14A-01D A42550 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42550	SRX593899	"Specific Capture analysis of normal sample TARGET-20-PASFZN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASFZN-14A-01D A42550 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42550_1_lane_dupsFlagged.bam	SRR1386371	@dbgap@:reads/SRP012000/SRS635939/SRX593899/SRR1386371/SRR1386371.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFZN-04A-01D_TARGET-20-PASFZN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFZN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFZN-14A-01D	DNA	EFO	SRS635939	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFZN-14A-01D A42550 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42550	SRX593899	"Specific Capture analysis of normal sample TARGET-20-PASFZN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASFZN-14A-01D A42550 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42550_1_lane_dupsFlagged.bam	SRR1386371	@dbgap@:reads/SRP012000/SRS635939/SRX593899/SRR1386371/SRR1386371.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFZN-04A-01D_TARGET-20-PASFZN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASFZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFZN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFZN-14A-01D	DNA	EFO	SRS635939	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFZN-14A-01D A42550 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42550	SRX593899	"Specific Capture analysis of normal sample TARGET-20-PASFZN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASFZN-14A-01D A42550 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42550_1_lane_dupsFlagged.bam	SRR1386371	@dbgap@:reads/SRP012000/SRS635939/SRX593899/SRR1386371/SRR1386371.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFZN-09A-01D_TARGET-20-PASFZN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASFZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFZN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFZN-14A-01D	DNA	EFO	SRS635939	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFZN-14A-01D A42550 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42550	SRX593899	"Specific Capture analysis of normal sample TARGET-20-PASFZN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASFZN-14A-01D A42550 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42550_1_lane_dupsFlagged.bam	SRR1386371	@dbgap@:reads/SRP012000/SRS635939/SRX593899/SRR1386371/SRR1386371.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASFZN-09A-01D_TARGET-20-PASFZN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGAE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGAE-04A-01D	DNA	EFO	SRS637314	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGAE-04A-01D A42249 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42249	SRX597680	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGAE-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASGAE-04A-01D A42249 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42249_1_lane_dupsFlagged.bam	SRR1394990	@dbgap@:reads/SRP012000/SRS637314/SRX597680/SRR1394990/SRR1394990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGAE-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGAE-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASGAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGAE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGAE-04A-01D	DNA	EFO	SRS637314	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGAE-04A-01D A42249 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42249	SRX597680	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGAE-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASGAE-04A-01D A42249 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42249_1_lane_dupsFlagged.bam	SRR1394990	@dbgap@:reads/SRP012000/SRS637314/SRX597680/SRR1394990/SRR1394990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGAE-04A-01D_TARGET-20-PASGAE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGAE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGAE-04A-01D	DNA	EFO	SRS637314	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGAE-04A-01D A42249 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42249	SRX597680	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGAE-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASGAE-04A-01D A42249 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42249_1_lane_dupsFlagged.bam	SRR1394990	@dbgap@:reads/SRP012000/SRS637314/SRX597680/SRR1394990/SRR1394990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGAE-04A-01D_TARGET-20-PASGAE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGAE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGAE-09A-01D	DNA	EFO	SRS633706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGAE-09A-01D A33419 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33419	SRX588000	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGAE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGAE-09A-01D A33419 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33419_1_lane_dupsFlagged.bam	SRR1373790	@dbgap@:reads/SRP012000/SRS633706/SRX588000/SRR1373790/SRR1373790.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGAE-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGAE-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASGAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGAE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGAE-09A-01D	DNA	EFO	SRS633706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGAE-09A-01D A33419 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33419	SRX588000	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGAE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGAE-09A-01D A33419 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33419_1_lane_dupsFlagged.bam	SRR1373790	@dbgap@:reads/SRP012000/SRS633706/SRX588000/SRR1373790/SRR1373790.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGAE-09A-01D_TARGET-20-PASGAE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGAE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGAE-09A-01D	DNA	EFO	SRS633706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGAE-09A-01D A33419 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33419	SRX588000	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGAE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGAE-09A-01D A33419 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33419_1_lane_dupsFlagged.bam	SRR1373790	@dbgap@:reads/SRP012000/SRS633706/SRX588000/SRR1373790/SRR1373790.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGAE-09A-01D_TARGET-20-PASGAE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGAE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGAE-14A-01D	DNA	EFO	SRS635714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGAE-14A-01D A41620 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41620	SRX593540	"Specific Capture analysis of normal sample TARGET-20-PASGAE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGAE-14A-01D A41620 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41620_1_lane_dupsFlagged.bam	SRR1385945	@dbgap@:reads/SRP012000/SRS635714/SRX593540/SRR1385945/SRR1385945.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGAE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGAE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASGAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGAE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGAE-14A-01D	DNA	EFO	SRS635714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGAE-14A-01D A41620 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41620	SRX593540	"Specific Capture analysis of normal sample TARGET-20-PASGAE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGAE-14A-01D A41620 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41620_1_lane_dupsFlagged.bam	SRR1385945	@dbgap@:reads/SRP012000/SRS635714/SRX593540/SRR1385945/SRR1385945.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGAE-04A-01D_TARGET-20-PASGAE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGAE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGAE-14A-01D	DNA	EFO	SRS635714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGAE-14A-01D A41620 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41620	SRX593540	"Specific Capture analysis of normal sample TARGET-20-PASGAE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGAE-14A-01D A41620 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41620_1_lane_dupsFlagged.bam	SRR1385945	@dbgap@:reads/SRP012000/SRS635714/SRX593540/SRR1385945/SRR1385945.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGAE-04A-01D_TARGET-20-PASGAE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGAE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGAE-14A-01D	DNA	EFO	SRS635714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGAE-14A-01D A41620 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41620	SRX593540	"Specific Capture analysis of normal sample TARGET-20-PASGAE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGAE-14A-01D A41620 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41620_1_lane_dupsFlagged.bam	SRR1385945	@dbgap@:reads/SRP012000/SRS635714/SRX593540/SRR1385945/SRR1385945.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGAE-09A-01D_TARGET-20-PASGAE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGAE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGAE-14A-01D	DNA	EFO	SRS635714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGAE-14A-01D A41620 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41620	SRX593540	"Specific Capture analysis of normal sample TARGET-20-PASGAE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGAE-14A-01D A41620 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41620_1_lane_dupsFlagged.bam	SRR1385945	@dbgap@:reads/SRP012000/SRS635714/SRX593540/SRR1385945/SRR1385945.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGAE-09A-01D_TARGET-20-PASGAE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-09A-02D	DNA	EFO	SRS635611	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGCE-09A-02D A41950 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41950	SRX593432	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGCE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASGCE-09A-02D A41950 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41950_1_lane_dupsFlagged.bam	SRR1385917	@dbgap@:reads/SRP012000/SRS635611/SRX593432/SRR1385917/SRR1385917.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGCE-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGCE-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-09A-02D	DNA	EFO	SRS635611	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGCE-09A-02D A41950 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41950	SRX593432	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGCE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASGCE-09A-02D A41950 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41950_1_lane_dupsFlagged.bam	SRR1385917	@dbgap@:reads/SRP012000/SRS635611/SRX593432/SRR1385917/SRR1385917.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGCE-09A-02D_TARGET-20-PASGCE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-09A-02D	DNA	EFO	SRS635611	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGCE-09A-02D A41950 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41950	SRX593432	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGCE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASGCE-09A-02D A41950 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41950_1_lane_dupsFlagged.bam	SRR1385917	@dbgap@:reads/SRP012000/SRS635611/SRX593432/SRR1385917/SRR1385917.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGCE-09A-02D_TARGET-20-PASGCE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGCE-14A-01D A42945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42945	SRX597930	"Specific Capture analysis of normal sample TARGET-20-PASGCE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASGCE-14A-01D A42945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42945_1_lane_dupsFlagged.bam	SRR1395221	@dbgap@:reads/SRP012000/SRS301131/SRX597930/SRR1395221/SRR1395221.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGCE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGCE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGCE-14A-01D A42945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42945	SRX597930	"Specific Capture analysis of normal sample TARGET-20-PASGCE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASGCE-14A-01D A42945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42945_1_lane_dupsFlagged.bam	SRR1395221	@dbgap@:reads/SRP012000/SRS301131/SRX597930/SRR1395221/SRR1395221.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGCE-09A-02D_TARGET-20-PASGCE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGCE-14A-01D A42945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42945	SRX597930	"Specific Capture analysis of normal sample TARGET-20-PASGCE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASGCE-14A-01D A42945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42945_1_lane_dupsFlagged.bam	SRR1395221	@dbgap@:reads/SRP012000/SRS301131/SRX597930/SRR1395221/SRR1395221.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGCE-09A-02D_TARGET-20-PASGCE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGCE-14A-01D A42945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42945	SRX597930	"Specific Capture analysis of normal sample TARGET-20-PASGCE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASGCE-14A-01D A42945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42945_1_lane_dupsFlagged.bam	SRR1395221	@dbgap@:reads/SRP012000/SRS301131/SRX597930/SRR1395221/SRR1395221.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGCE-40A-01D_TARGET-20-PASGCE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-14A-01D	DNA	EFO	SRS301131	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGCE-14A-01D A42945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42945	SRX597930	"Specific Capture analysis of normal sample TARGET-20-PASGCE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASGCE-14A-01D A42945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42945_1_lane_dupsFlagged.bam	SRR1395221	@dbgap@:reads/SRP012000/SRS301131/SRX597930/SRR1395221/SRR1395221.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGCE-40A-01D_TARGET-20-PASGCE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-40A-01D	DNA	EFO	SRS301132	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGCE-40A-01D A42277 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42277	SRX597747	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGCE-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASGCE-40A-01D A42277 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42277_1_lane_dupsFlagged.bam	SRR1394963	@dbgap@:reads/SRP012000/SRS301132/SRX597747/SRR1394963/SRR1394963.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGCE-40A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGCE-40A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-40A-01D	DNA	EFO	SRS301132	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGCE-40A-01D A42277 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42277	SRX597747	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGCE-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASGCE-40A-01D A42277 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42277_1_lane_dupsFlagged.bam	SRR1394963	@dbgap@:reads/SRP012000/SRS301132/SRX597747/SRR1394963/SRR1394963.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGCE-40A-01D_TARGET-20-PASGCE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGCE-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCE-40A-01D	DNA	EFO	SRS301132	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGCE-40A-01D A42277 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42277	SRX597747	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGCE-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASGCE-40A-01D A42277 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42277_1_lane_dupsFlagged.bam	SRR1394963	@dbgap@:reads/SRP012000/SRS301132/SRX597747/SRR1394963/SRR1394963.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGCE-40A-01D_TARGET-20-PASGCE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGCJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCJ-03A-01D	DNA	EFO	SRS633637	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGCJ-03A-01D A33380 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33380	SRX587930	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGCJ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGCJ-03A-01D A33380 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33380_1_lane_dupsFlagged.bam	SRR1373829	@dbgap@:reads/SRP012000/SRS633637/SRX587930/SRR1373829/SRR1373829.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGCJ-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGCJ-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASGCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGCJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCJ-03A-01D	DNA	EFO	SRS633637	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGCJ-03A-01D A33380 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33380	SRX587930	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGCJ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGCJ-03A-01D A33380 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33380_1_lane_dupsFlagged.bam	SRR1373829	@dbgap@:reads/SRP012000/SRS633637/SRX587930/SRR1373829/SRR1373829.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGCJ-03A-01D_TARGET-20-PASGCJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGCJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCJ-03A-01D	DNA	EFO	SRS633637	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGCJ-03A-01D A33380 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33380	SRX587930	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGCJ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGCJ-03A-01D A33380 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33380_1_lane_dupsFlagged.bam	SRR1373829	@dbgap@:reads/SRP012000/SRS633637/SRX587930/SRR1373829/SRR1373829.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGCJ-03A-01D_TARGET-20-PASGCJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCJ-14A-01D	DNA	EFO	SRS637467	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGCJ-14A-01D A42866 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42866	SRX597888	"Specific Capture analysis of normal sample TARGET-20-PASGCJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASGCJ-14A-01D A42866 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42866_1_lane_dupsFlagged.bam	SRR1395199	@dbgap@:reads/SRP012000/SRS637467/SRX597888/SRR1395199/SRR1395199.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGCJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGCJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASGCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCJ-14A-01D	DNA	EFO	SRS637467	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGCJ-14A-01D A42866 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42866	SRX597888	"Specific Capture analysis of normal sample TARGET-20-PASGCJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASGCJ-14A-01D A42866 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42866_1_lane_dupsFlagged.bam	SRR1395199	@dbgap@:reads/SRP012000/SRS637467/SRX597888/SRR1395199/SRR1395199.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGCJ-03A-01D_TARGET-20-PASGCJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGCJ-14A-01D	DNA	EFO	SRS637467	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGCJ-14A-01D A42866 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42866	SRX597888	"Specific Capture analysis of normal sample TARGET-20-PASGCJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASGCJ-14A-01D A42866 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42866_1_lane_dupsFlagged.bam	SRR1395199	@dbgap@:reads/SRP012000/SRS637467/SRX597888/SRR1395199/SRR1395199.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGCJ-03A-01D_TARGET-20-PASGCJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGEM-03A-01D	DNA	EFO	SRS633670	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGEM-03A-01D A33420 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33420	SRX587964	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGEM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGEM-03A-01D A33420 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33420_1_lane_dupsFlagged.bam	SRR1373786	@dbgap@:reads/SRP012000/SRS633670/SRX587964/SRR1373786/SRR1373786.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGEM-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGEM-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASGEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGEM-03A-01D	DNA	EFO	SRS633670	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGEM-03A-01D A33420 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33420	SRX587964	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGEM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGEM-03A-01D A33420 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33420_1_lane_dupsFlagged.bam	SRR1373786	@dbgap@:reads/SRP012000/SRS633670/SRX587964/SRR1373786/SRR1373786.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGEM-03A-01D_TARGET-20-PASGEM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGEM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGEM-03A-01D	DNA	EFO	SRS633670	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGEM-03A-01D A33420 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33420	SRX587964	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGEM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGEM-03A-01D A33420 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33420_1_lane_dupsFlagged.bam	SRR1373786	@dbgap@:reads/SRP012000/SRS633670/SRX587964/SRR1373786/SRR1373786.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGEM-03A-01D_TARGET-20-PASGEM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGEM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGEM-14A-01D	DNA	EFO	SRS635664	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGEM-14A-01D A41621 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41621	SRX593487	"Specific Capture analysis of normal sample TARGET-20-PASGEM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGEM-14A-01D A41621 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41621_1_lane_dupsFlagged.bam	SRR1385936	@dbgap@:reads/SRP012000/SRS635664/SRX593487/SRR1385936/SRR1385936.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGEM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGEM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASGEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGEM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGEM-14A-01D	DNA	EFO	SRS635664	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGEM-14A-01D A41621 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41621	SRX593487	"Specific Capture analysis of normal sample TARGET-20-PASGEM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGEM-14A-01D A41621 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41621_1_lane_dupsFlagged.bam	SRR1385936	@dbgap@:reads/SRP012000/SRS635664/SRX593487/SRR1385936/SRR1385936.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGEM-03A-01D_TARGET-20-PASGEM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGEM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGEM-14A-01D	DNA	EFO	SRS635664	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGEM-14A-01D A41621 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41621	SRX593487	"Specific Capture analysis of normal sample TARGET-20-PASGEM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGEM-14A-01D A41621 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41621_1_lane_dupsFlagged.bam	SRR1385936	@dbgap@:reads/SRP012000/SRS635664/SRX593487/SRR1385936/SRR1385936.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGEM-03A-01D_TARGET-20-PASGEM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGFI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGFI-03A-01D	DNA	EFO	SRS633665	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGFI-03A-01D A33377 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33377	SRX587959	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGFI-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASGFI-03A-01D A33377 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33377_1_lane_dupsFlagged.bam	SRR1373767	@dbgap@:reads/SRP012000/SRS633665/SRX587959/SRR1373767/SRR1373767.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGFI-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGFI-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASGFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGFI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGFI-03A-01D	DNA	EFO	SRS633665	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGFI-03A-01D A33377 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33377	SRX587959	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGFI-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASGFI-03A-01D A33377 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33377_1_lane_dupsFlagged.bam	SRR1373767	@dbgap@:reads/SRP012000/SRS633665/SRX587959/SRR1373767/SRR1373767.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGFI-03A-01D_TARGET-20-PASGFI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGFI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGFI-03A-01D	DNA	EFO	SRS633665	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGFI-03A-01D A33377 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33377	SRX587959	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGFI-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASGFI-03A-01D A33377 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33377_1_lane_dupsFlagged.bam	SRR1373767	@dbgap@:reads/SRP012000/SRS633665/SRX587959/SRR1373767/SRR1373767.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGFI-03A-01D_TARGET-20-PASGFI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGFI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGFI-14A-01D	DNA	EFO	SRS635692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGFI-14A-01D A41622 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41622	SRX593518	"Specific Capture analysis of normal sample TARGET-20-PASGFI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGFI-14A-01D A41622 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41622_1_lane_dupsFlagged.bam	SRR1385942	@dbgap@:reads/SRP012000/SRS635692/SRX593518/SRR1385942/SRR1385942.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGFI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGFI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASGFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGFI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGFI-14A-01D	DNA	EFO	SRS635692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGFI-14A-01D A41622 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41622	SRX593518	"Specific Capture analysis of normal sample TARGET-20-PASGFI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGFI-14A-01D A41622 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41622_1_lane_dupsFlagged.bam	SRR1385942	@dbgap@:reads/SRP012000/SRS635692/SRX593518/SRR1385942/SRR1385942.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGFI-03A-01D_TARGET-20-PASGFI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGFI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGFI-14A-01D	DNA	EFO	SRS635692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGFI-14A-01D A41622 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41622	SRX593518	"Specific Capture analysis of normal sample TARGET-20-PASGFI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGFI-14A-01D A41622 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41622_1_lane_dupsFlagged.bam	SRR1385942	@dbgap@:reads/SRP012000/SRS635692/SRX593518/SRR1385942/SRR1385942.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGFI-03A-01D_TARGET-20-PASGFI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-09A-02D	DNA	EFO	SRS628977	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGGK-09A-02D A32263 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32263	SRX575033	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGGK-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGGK-09A-02D A32263 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32263_1_lane_dupsFlagged.bam	SRR1346127	@dbgap@:reads/SRP012000/SRS628977/SRX575033/SRR1346127/SRR1346127.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGGK-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGGK-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-09A-02D	DNA	EFO	SRS628977	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGGK-09A-02D A32263 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32263	SRX575033	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGGK-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGGK-09A-02D A32263 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32263_1_lane_dupsFlagged.bam	SRR1346127	@dbgap@:reads/SRP012000/SRS628977/SRX575033/SRR1346127/SRR1346127.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGGK-09A-02D_TARGET-20-PASGGK-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-09A-02D	DNA	EFO	SRS628977	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGGK-09A-02D A32263 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32263	SRX575033	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGGK-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGGK-09A-02D A32263 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32263_1_lane_dupsFlagged.bam	SRR1346127	@dbgap@:reads/SRP012000/SRS628977/SRX575033/SRR1346127/SRR1346127.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGGK-09A-02D_TARGET-20-PASGGK-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-14A-02D	DNA	EFO	SRS637370	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGGK-14A-02D A42812 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42812	SRX597773	"Specific Capture analysis of normal sample TARGET-20-PASGGK-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASGGK-14A-02D A42812 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42812_1_lane_dupsFlagged.bam	SRR1395068	@dbgap@:reads/SRP012000/SRS637370/SRX597773/SRR1395068/SRR1395068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGGK-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGGK-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-14A-02D	DNA	EFO	SRS637370	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGGK-14A-02D A42812 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42812	SRX597773	"Specific Capture analysis of normal sample TARGET-20-PASGGK-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASGGK-14A-02D A42812 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42812_1_lane_dupsFlagged.bam	SRR1395068	@dbgap@:reads/SRP012000/SRS637370/SRX597773/SRR1395068/SRR1395068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGGK-09A-02D_TARGET-20-PASGGK-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-14A-02D	DNA	EFO	SRS637370	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGGK-14A-02D A42812 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42812	SRX597773	"Specific Capture analysis of normal sample TARGET-20-PASGGK-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASGGK-14A-02D A42812 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42812_1_lane_dupsFlagged.bam	SRR1395068	@dbgap@:reads/SRP012000/SRS637370/SRX597773/SRR1395068/SRR1395068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGGK-09A-02D_TARGET-20-PASGGK-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGHD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGHD-09A-01D	DNA	EFO	SRS633628	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGHD-09A-01D A33421 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33421	SRX587922	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGHD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGHD-09A-01D A33421 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33421_1_lane_dupsFlagged.bam	SRR1373810	@dbgap@:reads/SRP012000/SRS633628/SRX587922/SRR1373810/SRR1373810.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGHD-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGHD-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASGKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGKA-09A-01D	DNA	EFO	SRS635472	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGKA-09A-01D A41795 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41795	SRX593194	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGKA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGKA-09A-01D A41795 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41795_1_lane_dupsFlagged.bam	SRR1385657	@dbgap@:reads/SRP012000/SRS635472/SRX593194/SRR1385657/SRR1385657.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGKA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGKA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASGKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGKA-09A-01D	DNA	EFO	SRS635472	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGKA-09A-01D A41795 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41795	SRX593194	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGKA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGKA-09A-01D A41795 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41795_1_lane_dupsFlagged.bam	SRR1385657	@dbgap@:reads/SRP012000/SRS635472/SRX593194/SRR1385657/SRR1385657.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGKA-09A-01D_TARGET-20-PASGKA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGKA-09A-01D	DNA	EFO	SRS635472	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGKA-09A-01D A41795 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41795	SRX593194	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGKA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGKA-09A-01D A41795 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41795_1_lane_dupsFlagged.bam	SRR1385657	@dbgap@:reads/SRP012000/SRS635472/SRX593194/SRR1385657/SRR1385657.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGKA-09A-01D_TARGET-20-PASGKA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGKA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGKA-14A-01D	DNA	EFO	SRS635697	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGKA-14A-01D A41623 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41623	SRX593519	"Specific Capture analysis of normal sample TARGET-20-PASGKA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGKA-14A-01D A41623 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41623_1_lane_dupsFlagged.bam	SRR1386000	@dbgap@:reads/SRP012000/SRS635697/SRX593519/SRR1386000/SRR1386000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGKA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGKA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASGKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGKA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGKA-14A-01D	DNA	EFO	SRS635697	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGKA-14A-01D A41623 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41623	SRX593519	"Specific Capture analysis of normal sample TARGET-20-PASGKA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGKA-14A-01D A41623 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41623_1_lane_dupsFlagged.bam	SRR1386000	@dbgap@:reads/SRP012000/SRS635697/SRX593519/SRR1386000/SRR1386000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGKA-09A-01D_TARGET-20-PASGKA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGKA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGKA-14A-01D	DNA	EFO	SRS635697	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGKA-14A-01D A41623 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41623	SRX593519	"Specific Capture analysis of normal sample TARGET-20-PASGKA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGKA-14A-01D A41623 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41623_1_lane_dupsFlagged.bam	SRR1386000	@dbgap@:reads/SRP012000/SRS635697/SRX593519/SRR1386000/SRR1386000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGKA-09A-01D_TARGET-20-PASGKA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGML-03A-01D	DNA	EFO	SRS628291	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGML-03A-01D A31217 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31217	SRX573347	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGML-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASGML-03A-01D A31217 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31217_1_lane_dupsFlagged.bam	SRR1342613	@dbgap@:reads/SRP012000/SRS628291/SRX573347/SRR1342613/SRR1342613.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGML-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGML-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGML-03A-01D	DNA	EFO	SRS628291	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGML-03A-01D A31217 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31217	SRX573347	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGML-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASGML-03A-01D A31217 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31217_1_lane_dupsFlagged.bam	SRR1342613	@dbgap@:reads/SRP012000/SRS628291/SRX573347/SRR1342613/SRR1342613.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGML-03A-01D_TARGET-20-PASGML-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGML-03A-01D	DNA	EFO	SRS628291	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGML-03A-01D A31217 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31217	SRX573347	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGML-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASGML-03A-01D A31217 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31217_1_lane_dupsFlagged.bam	SRR1342613	@dbgap@:reads/SRP012000/SRS628291/SRX573347/SRR1342613/SRR1342613.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGML-03A-01D_TARGET-20-PASGML-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGML-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGML-14A-01D	DNA	EFO	SRS635678	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGML-14A-01D A41627 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41627	SRX593502	"Specific Capture analysis of normal sample TARGET-20-PASGML-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGML-14A-01D A41627 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41627_1_lane_dupsFlagged.bam	SRR1385930	@dbgap@:reads/SRP012000/SRS635678/SRX593502/SRR1385930/SRR1385930.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGML-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGML-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGML-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGML-14A-01D	DNA	EFO	SRS635678	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGML-14A-01D A41627 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41627	SRX593502	"Specific Capture analysis of normal sample TARGET-20-PASGML-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGML-14A-01D A41627 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41627_1_lane_dupsFlagged.bam	SRR1385930	@dbgap@:reads/SRP012000/SRS635678/SRX593502/SRR1385930/SRR1385930.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGML-03A-01D_TARGET-20-PASGML-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGML-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGML-14A-01D	DNA	EFO	SRS635678	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGML-14A-01D A41627 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41627	SRX593502	"Specific Capture analysis of normal sample TARGET-20-PASGML-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGML-14A-01D A41627 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41627_1_lane_dupsFlagged.bam	SRR1385930	@dbgap@:reads/SRP012000/SRS635678/SRX593502/SRR1385930/SRR1385930.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGML-03A-01D_TARGET-20-PASGML-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-03A-01D	DNA	EFO	SRS635593	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGMZ-03A-01D A41951 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41951	SRX593411	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGMZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASGMZ-03A-01D A41951 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41951_1_lane_dupsFlagged.bam	SRR1385906	@dbgap@:reads/SRP012000/SRS635593/SRX593411/SRR1385906/SRR1385906.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGMZ-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGMZ-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02D	DNA	EFO	SRS270765	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-04A-02D A42250 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42250	SRX597756	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGWH-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASGWH-04A-02D A42250 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42250_1_lane_dupsFlagged.bam	SRR1395012	@dbgap@:reads/SRP012000/SRS270765/SRX597756/SRR1395012/SRR1395012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGWH-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGWH-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02D	DNA	EFO	SRS270765	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-04A-02D A42250 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42250	SRX597756	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGWH-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASGWH-04A-02D A42250 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42250_1_lane_dupsFlagged.bam	SRR1395012	@dbgap@:reads/SRP012000/SRS270765/SRX597756/SRR1395012/SRR1395012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGWH-04A-02D_TARGET-20-PASGWH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02D	DNA	EFO	SRS270765	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-04A-02D A42250 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42250	SRX597756	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGWH-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASGWH-04A-02D A42250 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42250_1_lane_dupsFlagged.bam	SRR1395012	@dbgap@:reads/SRP012000/SRS270765/SRX597756/SRR1395012/SRR1395012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGWH-04A-02D_TARGET-20-PASGWH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-01D	DNA	EFO	SRS628979	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-09A-01D A32264 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32264	SRX575035	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGWH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGWH-09A-01D A32264 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32264_1_lane_dupsFlagged.bam	SRR1346153	@dbgap@:reads/SRP012000/SRS628979/SRX575035/SRR1346153/SRR1346153.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGWH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGWH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-01D	DNA	EFO	SRS628979	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-09A-01D A32264 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32264	SRX575035	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGWH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGWH-09A-01D A32264 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32264_1_lane_dupsFlagged.bam	SRR1346153	@dbgap@:reads/SRP012000/SRS628979/SRX575035/SRR1346153/SRR1346153.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGWH-09A-01D_TARGET-20-PASGWH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-01D	DNA	EFO	SRS628979	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-09A-01D A32264 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32264	SRX575035	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGWH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGWH-09A-01D A32264 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32264_1_lane_dupsFlagged.bam	SRR1346153	@dbgap@:reads/SRP012000/SRS628979/SRX575035/SRR1346153/SRR1346153.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGWH-09A-01D_TARGET-20-PASGWH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-01D	DNA	EFO	SRS635671	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-14A-01D A41624 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41624	SRX593495	"Specific Capture analysis of normal sample TARGET-20-PASGWH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGWH-14A-01D A41624 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41624_1_lane_dupsFlagged.bam	SRR1385998	@dbgap@:reads/SRP012000/SRS635671/SRX593495/SRR1385998/SRR1385998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGWH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGWH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-01D	DNA	EFO	SRS635671	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-14A-01D A41624 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41624	SRX593495	"Specific Capture analysis of normal sample TARGET-20-PASGWH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGWH-14A-01D A41624 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41624_1_lane_dupsFlagged.bam	SRR1385998	@dbgap@:reads/SRP012000/SRS635671/SRX593495/SRR1385998/SRR1385998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGWH-04A-02D_TARGET-20-PASGWH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-01D	DNA	EFO	SRS635671	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-14A-01D A41624 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41624	SRX593495	"Specific Capture analysis of normal sample TARGET-20-PASGWH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGWH-14A-01D A41624 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41624_1_lane_dupsFlagged.bam	SRR1385998	@dbgap@:reads/SRP012000/SRS635671/SRX593495/SRR1385998/SRR1385998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGWH-04A-02D_TARGET-20-PASGWH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-01D	DNA	EFO	SRS635671	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-14A-01D A41624 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41624	SRX593495	"Specific Capture analysis of normal sample TARGET-20-PASGWH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGWH-14A-01D A41624 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41624_1_lane_dupsFlagged.bam	SRR1385998	@dbgap@:reads/SRP012000/SRS635671/SRX593495/SRR1385998/SRR1385998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGWH-09A-01D_TARGET-20-PASGWH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-14A-01D	DNA	EFO	SRS635671	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-14A-01D A41624 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41624	SRX593495	"Specific Capture analysis of normal sample TARGET-20-PASGWH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGWH-14A-01D A41624 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41624_1_lane_dupsFlagged.bam	SRR1385998	@dbgap@:reads/SRP012000/SRS635671/SRX593495/SRR1385998/SRR1385998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGWH-09A-01D_TARGET-20-PASGWH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGZK-09A-01D	DNA	EFO	SRS628939	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGZK-09A-01D A32265 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32265	SRX574995	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGZK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGZK-09A-01D A32265 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32265_1_lane_dupsFlagged.bam	SRR1346126	@dbgap@:reads/SRP012000/SRS628939/SRX574995/SRR1346126/SRR1346126.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGZK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGZK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASGZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGZK-09A-01D	DNA	EFO	SRS628939	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGZK-09A-01D A32265 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32265	SRX574995	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGZK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGZK-09A-01D A32265 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32265_1_lane_dupsFlagged.bam	SRR1346126	@dbgap@:reads/SRP012000/SRS628939/SRX574995/SRR1346126/SRR1346126.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGZK-09A-01D_TARGET-20-PASGZK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGZK-09A-01D	DNA	EFO	SRS628939	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGZK-09A-01D A32265 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32265	SRX574995	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGZK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGZK-09A-01D A32265 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32265_1_lane_dupsFlagged.bam	SRR1346126	@dbgap@:reads/SRP012000/SRS628939/SRX574995/SRR1346126/SRR1346126.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGZK-09A-01D_TARGET-20-PASGZK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGZK-14A-01D	DNA	EFO	SRS635666	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGZK-14A-01D A41626 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41626	SRX593492	"Specific Capture analysis of normal sample TARGET-20-PASGZK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGZK-14A-01D A41626 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41626_1_lane_dupsFlagged.bam	SRR1386014	@dbgap@:reads/SRP012000/SRS635666/SRX593492/SRR1386014/SRR1386014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGZK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGZK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASGZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGZK-14A-01D	DNA	EFO	SRS635666	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGZK-14A-01D A41626 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41626	SRX593492	"Specific Capture analysis of normal sample TARGET-20-PASGZK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGZK-14A-01D A41626 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41626_1_lane_dupsFlagged.bam	SRR1386014	@dbgap@:reads/SRP012000/SRS635666/SRX593492/SRR1386014/SRR1386014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGZK-09A-01D_TARGET-20-PASGZK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGZK-14A-01D	DNA	EFO	SRS635666	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGZK-14A-01D A41626 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41626	SRX593492	"Specific Capture analysis of normal sample TARGET-20-PASGZK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGZK-14A-01D A41626 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41626_1_lane_dupsFlagged.bam	SRR1386014	@dbgap@:reads/SRP012000/SRS635666/SRX593492/SRR1386014/SRR1386014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGZK-09A-01D_TARGET-20-PASGZK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGZV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGZV-03A-01D	DNA	EFO	SRS633707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGZV-03A-01D A33378 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33378	SRX588001	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGZV-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGZV-03A-01D A33378 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33378_1_lane_dupsFlagged.bam	SRR1373823	@dbgap@:reads/SRP012000/SRS633707/SRX588001/SRR1373823/SRR1373823.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGZV-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGZV-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASGZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGZV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGZV-03A-01D	DNA	EFO	SRS633707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGZV-03A-01D A33378 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33378	SRX588001	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGZV-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGZV-03A-01D A33378 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33378_1_lane_dupsFlagged.bam	SRR1373823	@dbgap@:reads/SRP012000/SRS633707/SRX588001/SRR1373823/SRR1373823.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGZV-03A-01D_TARGET-20-PASGZV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGZV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGZV-03A-01D	DNA	EFO	SRS633707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGZV-03A-01D A33378 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33378	SRX588001	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASGZV-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASGZV-03A-01D A33378 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33378_1_lane_dupsFlagged.bam	SRR1373823	@dbgap@:reads/SRP012000/SRS633707/SRX588001/SRR1373823/SRR1373823.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGZV-03A-01D_TARGET-20-PASGZV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASGZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGZV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGZV-14A-01D	DNA	EFO	SRS635676	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGZV-14A-01D A41625 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41625	SRX593499	"Specific Capture analysis of normal sample TARGET-20-PASGZV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGZV-14A-01D A41625 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41625_1_lane_dupsFlagged.bam	SRR1385964	@dbgap@:reads/SRP012000/SRS635676/SRX593499/SRR1385964/SRR1385964.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASGZV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASGZV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASGZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGZV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGZV-14A-01D	DNA	EFO	SRS635676	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGZV-14A-01D A41625 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41625	SRX593499	"Specific Capture analysis of normal sample TARGET-20-PASGZV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGZV-14A-01D A41625 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41625_1_lane_dupsFlagged.bam	SRR1385964	@dbgap@:reads/SRP012000/SRS635676/SRX593499/SRR1385964/SRR1385964.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGZV-03A-01D_TARGET-20-PASGZV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASGZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASGZV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGZV-14A-01D	DNA	EFO	SRS635676	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGZV-14A-01D A41625 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41625	SRX593499	"Specific Capture analysis of normal sample TARGET-20-PASGZV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASGZV-14A-01D A41625 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41625_1_lane_dupsFlagged.bam	SRR1385964	@dbgap@:reads/SRP012000/SRS635676/SRX593499/SRR1385964/SRR1385964.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASGZV-03A-01D_TARGET-20-PASGZV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01D	DNA	EFO	SRS489737	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHBI-09A-01D A41843 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41843	SRX593329	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHBI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASHBI-09A-01D A41843 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41843_1_lane_dupsFlagged.bam	SRR1385795	@dbgap@:reads/SRP012000/SRS489737/SRX593329/SRR1385795/SRR1385795.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASHBI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASHBI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01D	DNA	EFO	SRS489737	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHBI-09A-01D A41843 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41843	SRX593329	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHBI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASHBI-09A-01D A41843 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41843_1_lane_dupsFlagged.bam	SRR1385795	@dbgap@:reads/SRP012000/SRS489737/SRX593329/SRR1385795/SRR1385795.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHBI-09A-01D_TARGET-20-PASHBI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01D	DNA	EFO	SRS489737	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHBI-09A-01D A41843 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41843	SRX593329	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHBI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASHBI-09A-01D A41843 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41843_1_lane_dupsFlagged.bam	SRR1385795	@dbgap@:reads/SRP012000/SRS489737/SRX593329/SRR1385795/SRR1385795.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHBI-09A-01D_TARGET-20-PASHBI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-14A-01D	DNA	EFO	SRS489736	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHBI-14A-01D A42813 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42813	SRX597794	"Specific Capture analysis of normal sample TARGET-20-PASHBI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASHBI-14A-01D A42813 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42813_1_lane_dupsFlagged.bam	SRR1395134	@dbgap@:reads/SRP012000/SRS489736/SRX597794/SRR1395134/SRR1395134.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASHBI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASHBI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-14A-01D	DNA	EFO	SRS489736	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHBI-14A-01D A42813 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42813	SRX597794	"Specific Capture analysis of normal sample TARGET-20-PASHBI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASHBI-14A-01D A42813 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42813_1_lane_dupsFlagged.bam	SRR1395134	@dbgap@:reads/SRP012000/SRS489736/SRX597794/SRR1395134/SRR1395134.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHBI-09A-01D_TARGET-20-PASHBI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-14A-01D	DNA	EFO	SRS489736	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHBI-14A-01D A42813 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42813	SRX597794	"Specific Capture analysis of normal sample TARGET-20-PASHBI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASHBI-14A-01D A42813 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42813_1_lane_dupsFlagged.bam	SRR1395134	@dbgap@:reads/SRP012000/SRS489736/SRX597794/SRR1395134/SRR1395134.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHBI-09A-01D_TARGET-20-PASHBI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASHMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASHMK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHMK-09A-01D	DNA	EFO	SRS628335	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHMK-09A-01D A31258 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31258	SRX573415	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHMK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASHMK-09A-01D A31258 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31258_1_lane_dupsFlagged.bam	SRR1342673	@dbgap@:reads/SRP012000/SRS628335/SRX573415/SRR1342673/SRR1342673.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASHMK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASHMK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASHMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASHMK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHMK-09A-01D	DNA	EFO	SRS628335	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHMK-09A-01D A31258 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31258	SRX573415	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHMK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASHMK-09A-01D A31258 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31258_1_lane_dupsFlagged.bam	SRR1342673	@dbgap@:reads/SRP012000/SRS628335/SRX573415/SRR1342673/SRR1342673.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHMK-09A-01D_TARGET-20-PASHMK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASHMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASHMK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHMK-09A-01D	DNA	EFO	SRS628335	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHMK-09A-01D A31258 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31258	SRX573415	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHMK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASHMK-09A-01D A31258 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31258_1_lane_dupsFlagged.bam	SRR1342673	@dbgap@:reads/SRP012000/SRS628335/SRX573415/SRR1342673/SRR1342673.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHMK-09A-01D_TARGET-20-PASHMK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASHMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASHMK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHMK-14A-01D	DNA	EFO	SRS635703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHMK-14A-01D A41628 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41628	SRX593527	"Specific Capture analysis of normal sample TARGET-20-PASHMK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASHMK-14A-01D A41628 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41628_1_lane_dupsFlagged.bam	SRR1386005	@dbgap@:reads/SRP012000/SRS635703/SRX593527/SRR1386005/SRR1386005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASHMK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASHMK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASHMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASHMK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHMK-14A-01D	DNA	EFO	SRS635703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHMK-14A-01D A41628 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41628	SRX593527	"Specific Capture analysis of normal sample TARGET-20-PASHMK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASHMK-14A-01D A41628 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41628_1_lane_dupsFlagged.bam	SRR1386005	@dbgap@:reads/SRP012000/SRS635703/SRX593527/SRR1386005/SRR1386005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHMK-09A-01D_TARGET-20-PASHMK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASHMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASHMK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHMK-14A-01D	DNA	EFO	SRS635703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHMK-14A-01D A41628 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41628	SRX593527	"Specific Capture analysis of normal sample TARGET-20-PASHMK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASHMK-14A-01D A41628 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41628_1_lane_dupsFlagged.bam	SRR1386005	@dbgap@:reads/SRP012000/SRS635703/SRX593527/SRR1386005/SRR1386005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHMK-09A-01D_TARGET-20-PASHMK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASHUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASHUS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHUS-09A-01D	DNA	EFO	SRS633696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHUS-09A-01D A33422 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33422	SRX587990	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHUS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASHUS-09A-01D A33422 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33422_1_lane_dupsFlagged.bam	SRR1373781	@dbgap@:reads/SRP012000/SRS633696/SRX587990/SRR1373781/SRR1373781.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASHUS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASHUS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASHWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHWN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWN-04A-01D	DNA	EFO	SRS637349	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWN-04A-01D A42217 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42217	SRX597748	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHWN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASHWN-04A-01D A42217 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42217_1_lane_dupsFlagged.bam	SRR1395025	@dbgap@:reads/SRP012000/SRS637349/SRX597748/SRR1395025/SRR1395025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASHWN-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASHWN-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASHWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHWN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWN-04A-01D	DNA	EFO	SRS637349	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWN-04A-01D A42217 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42217	SRX597748	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHWN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASHWN-04A-01D A42217 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42217_1_lane_dupsFlagged.bam	SRR1395025	@dbgap@:reads/SRP012000/SRS637349/SRX597748/SRR1395025/SRR1395025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHWN-04A-01D_TARGET-20-PASHWN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASHWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHWN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWN-04A-01D	DNA	EFO	SRS637349	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWN-04A-01D A42217 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42217	SRX597748	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHWN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASHWN-04A-01D A42217 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42217_1_lane_dupsFlagged.bam	SRR1395025	@dbgap@:reads/SRP012000/SRS637349/SRX597748/SRR1395025/SRR1395025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHWN-04A-01D_TARGET-20-PASHWN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASHWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWN-09A-01D	DNA	EFO	SRS628300	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWN-09A-01D A31259 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31259	SRX573364	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHWN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PASHWN-09A-01D A31259 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31259_1_lane_dupsFlagged.bam	SRR1342675	@dbgap@:reads/SRP012000/SRS628300/SRX573364/SRR1342675/SRR1342675.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASHWN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASHWN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASHWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWN-09A-01D	DNA	EFO	SRS628300	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWN-09A-01D A31259 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31259	SRX573364	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHWN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PASHWN-09A-01D A31259 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31259_1_lane_dupsFlagged.bam	SRR1342675	@dbgap@:reads/SRP012000/SRS628300/SRX573364/SRR1342675/SRR1342675.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHWN-09A-01D_TARGET-20-PASHWN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASHWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWN-09A-01D	DNA	EFO	SRS628300	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWN-09A-01D A31259 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31259	SRX573364	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHWN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PASHWN-09A-01D A31259 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31259_1_lane_dupsFlagged.bam	SRR1342675	@dbgap@:reads/SRP012000/SRS628300/SRX573364/SRR1342675/SRR1342675.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHWN-09A-01D_TARGET-20-PASHWN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASHWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWN-14A-01D	DNA	EFO	SRS637460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWN-14A-01D A42944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42944	SRX597876	"Specific Capture analysis of normal sample TARGET-20-PASHWN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASHWN-14A-01D A42944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42944_1_lane_dupsFlagged.bam	SRR1395212	@dbgap@:reads/SRP012000/SRS637460/SRX597876/SRR1395212/SRR1395212.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASHWN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASHWN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASHWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWN-14A-01D	DNA	EFO	SRS637460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWN-14A-01D A42944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42944	SRX597876	"Specific Capture analysis of normal sample TARGET-20-PASHWN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASHWN-14A-01D A42944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42944_1_lane_dupsFlagged.bam	SRR1395212	@dbgap@:reads/SRP012000/SRS637460/SRX597876/SRR1395212/SRR1395212.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHWN-04A-01D_TARGET-20-PASHWN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASHWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWN-14A-01D	DNA	EFO	SRS637460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWN-14A-01D A42944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42944	SRX597876	"Specific Capture analysis of normal sample TARGET-20-PASHWN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASHWN-14A-01D A42944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42944_1_lane_dupsFlagged.bam	SRR1395212	@dbgap@:reads/SRP012000/SRS637460/SRX597876/SRR1395212/SRR1395212.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHWN-04A-01D_TARGET-20-PASHWN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASHWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWN-14A-01D	DNA	EFO	SRS637460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWN-14A-01D A42944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42944	SRX597876	"Specific Capture analysis of normal sample TARGET-20-PASHWN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASHWN-14A-01D A42944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42944_1_lane_dupsFlagged.bam	SRR1395212	@dbgap@:reads/SRP012000/SRS637460/SRX597876/SRR1395212/SRR1395212.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHWN-09A-01D_TARGET-20-PASHWN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASHWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWN-14A-01D	DNA	EFO	SRS637460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWN-14A-01D A42944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42944	SRX597876	"Specific Capture analysis of normal sample TARGET-20-PASHWN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASHWN-14A-01D A42944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42944_1_lane_dupsFlagged.bam	SRR1395212	@dbgap@:reads/SRP012000/SRS637460/SRX597876/SRR1395212/SRR1395212.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHWN-09A-01D_TARGET-20-PASHWN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASHWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASHWV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWV-09A-01D	DNA	EFO	SRS635601	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWV-09A-01D A41929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41929	SRX593421	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHWV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASHWV-09A-01D A41929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41929_1_lane_dupsFlagged.bam	SRR1385925	@dbgap@:reads/SRP012000/SRS635601/SRX593421/SRR1385925/SRR1385925.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASHWV-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASHWV-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASHWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASHWV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWV-09A-01D	DNA	EFO	SRS635601	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWV-09A-01D A41929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41929	SRX593421	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHWV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASHWV-09A-01D A41929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41929_1_lane_dupsFlagged.bam	SRR1385925	@dbgap@:reads/SRP012000/SRS635601/SRX593421/SRR1385925/SRR1385925.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHWV-09A-01D_TARGET-20-PASHWV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASHWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASHWV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWV-09A-01D	DNA	EFO	SRS635601	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWV-09A-01D A41929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41929	SRX593421	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHWV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASHWV-09A-01D A41929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41929_1_lane_dupsFlagged.bam	SRR1385925	@dbgap@:reads/SRP012000/SRS635601/SRX593421/SRR1385925/SRR1385925.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHWV-09A-01D_TARGET-20-PASHWV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASHWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASHWV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWV-14A-01D	DNA	EFO	SRS637417	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWV-14A-01D A42814 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42814	SRX597826	"Specific Capture analysis of normal sample TARGET-20-PASHWV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASHWV-14A-01D A42814 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42814_1_lane_dupsFlagged.bam	SRR1395061	@dbgap@:reads/SRP012000/SRS637417/SRX597826/SRR1395061/SRR1395061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASHWV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASHWV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASHWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASHWV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWV-14A-01D	DNA	EFO	SRS637417	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWV-14A-01D A42814 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42814	SRX597826	"Specific Capture analysis of normal sample TARGET-20-PASHWV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASHWV-14A-01D A42814 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42814_1_lane_dupsFlagged.bam	SRR1395061	@dbgap@:reads/SRP012000/SRS637417/SRX597826/SRR1395061/SRR1395061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHWV-09A-01D_TARGET-20-PASHWV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASHWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASHWV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWV-14A-01D	DNA	EFO	SRS637417	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWV-14A-01D A42814 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42814	SRX597826	"Specific Capture analysis of normal sample TARGET-20-PASHWV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASHWV-14A-01D A42814 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42814_1_lane_dupsFlagged.bam	SRR1395061	@dbgap@:reads/SRP012000/SRS637417/SRX597826/SRR1395061/SRR1395061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHWV-09A-01D_TARGET-20-PASHWV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-03D	DNA	EFO	SRS270771	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-04A-03D A42279 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42279	SRX597720	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHYZ-04A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASHYZ-04A-03D A42279 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42279_1_lane_dupsFlagged.bam	SRR1394977	@dbgap@:reads/SRP012000/SRS270771/SRX597720/SRR1394977/SRR1394977.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASHYZ-04A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASHYZ-04A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-03D	DNA	EFO	SRS270771	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-04A-03D A42279 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42279	SRX597720	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHYZ-04A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASHYZ-04A-03D A42279 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42279_1_lane_dupsFlagged.bam	SRR1394977	@dbgap@:reads/SRP012000/SRS270771/SRX597720/SRR1394977/SRR1394977.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHYZ-04A-03D_TARGET-20-PASHYZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-03D	DNA	EFO	SRS270771	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-04A-03D A42279 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42279	SRX597720	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHYZ-04A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASHYZ-04A-03D A42279 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42279_1_lane_dupsFlagged.bam	SRR1394977	@dbgap@:reads/SRP012000/SRS270771/SRX597720/SRR1394977/SRR1394977.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHYZ-04A-03D_TARGET-20-PASHYZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-02D	DNA	EFO	SRS628934	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-09A-02D A32266 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32266	SRX574990	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHYZ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASHYZ-09A-02D A32266 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32266_1_lane_dupsFlagged.bam	SRR1346149	@dbgap@:reads/SRP012000/SRS628934/SRX574990/SRR1346149/SRR1346149.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASHYZ-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASHYZ-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-02D	DNA	EFO	SRS628934	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-09A-02D A32266 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32266	SRX574990	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHYZ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASHYZ-09A-02D A32266 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32266_1_lane_dupsFlagged.bam	SRR1346149	@dbgap@:reads/SRP012000/SRS628934/SRX574990/SRR1346149/SRR1346149.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHYZ-09A-02D_TARGET-20-PASHYZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-02D	DNA	EFO	SRS628934	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-09A-02D A32266 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32266	SRX574990	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASHYZ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASHYZ-09A-02D A32266 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32266_1_lane_dupsFlagged.bam	SRR1346149	@dbgap@:reads/SRP012000/SRS628934/SRX574990/SRR1346149/SRR1346149.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHYZ-09A-02D_TARGET-20-PASHYZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-01D	DNA	EFO	SRS635713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-14A-01D A41629 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41629	SRX593537	"Specific Capture analysis of normal sample TARGET-20-PASHYZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASHYZ-14A-01D A41629 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41629_1_lane_dupsFlagged.bam	SRR1385954	@dbgap@:reads/SRP012000/SRS635713/SRX593537/SRR1385954/SRR1385954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASHYZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASHYZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-01D	DNA	EFO	SRS635713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-14A-01D A41629 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41629	SRX593537	"Specific Capture analysis of normal sample TARGET-20-PASHYZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASHYZ-14A-01D A41629 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41629_1_lane_dupsFlagged.bam	SRR1385954	@dbgap@:reads/SRP012000/SRS635713/SRX593537/SRR1385954/SRR1385954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHYZ-04A-03D_TARGET-20-PASHYZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-01D	DNA	EFO	SRS635713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-14A-01D A41629 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41629	SRX593537	"Specific Capture analysis of normal sample TARGET-20-PASHYZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASHYZ-14A-01D A41629 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41629_1_lane_dupsFlagged.bam	SRR1385954	@dbgap@:reads/SRP012000/SRS635713/SRX593537/SRR1385954/SRR1385954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHYZ-04A-03D_TARGET-20-PASHYZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-01D	DNA	EFO	SRS635713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-14A-01D A41629 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41629	SRX593537	"Specific Capture analysis of normal sample TARGET-20-PASHYZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASHYZ-14A-01D A41629 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41629_1_lane_dupsFlagged.bam	SRR1385954	@dbgap@:reads/SRP012000/SRS635713/SRX593537/SRR1385954/SRR1385954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHYZ-09A-02D_TARGET-20-PASHYZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-14A-01D	DNA	EFO	SRS635713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-14A-01D A41629 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41629	SRX593537	"Specific Capture analysis of normal sample TARGET-20-PASHYZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASHYZ-14A-01D A41629 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41629_1_lane_dupsFlagged.bam	SRR1385954	@dbgap@:reads/SRP012000/SRS635713/SRX593537/SRR1385954/SRR1385954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASHYZ-09A-02D_TARGET-20-PASHYZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASIAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASIAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIAI-09A-01D	DNA	EFO	SRS635615	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIAI-09A-01D A41953 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41953	SRX593434	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASIAI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASIAI-09A-01D A41953 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41953_1_lane_dupsFlagged.bam	SRR1385926	@dbgap@:reads/SRP012000/SRS635615/SRX593434/SRR1385926/SRR1385926.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASIAI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASIAI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASIAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASIAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIAI-09A-01D	DNA	EFO	SRS635615	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIAI-09A-01D A41953 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41953	SRX593434	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASIAI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASIAI-09A-01D A41953 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41953_1_lane_dupsFlagged.bam	SRR1385926	@dbgap@:reads/SRP012000/SRS635615/SRX593434/SRR1385926/SRR1385926.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIAI-09A-01D_TARGET-20-PASIAI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASIAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASIAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIAI-09A-01D	DNA	EFO	SRS635615	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIAI-09A-01D A41953 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41953	SRX593434	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASIAI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASIAI-09A-01D A41953 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41953_1_lane_dupsFlagged.bam	SRR1385926	@dbgap@:reads/SRP012000/SRS635615/SRX593434/SRR1385926/SRR1385926.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIAI-09A-01D_TARGET-20-PASIAI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASIAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASIAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIAI-14A-01D	DNA	EFO	SRS637414	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIAI-14A-01D A42815 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42815	SRX597823	"Specific Capture analysis of normal sample TARGET-20-PASIAI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASIAI-14A-01D A42815 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42815_1_lane_dupsFlagged.bam	SRR1395072	@dbgap@:reads/SRP012000/SRS637414/SRX597823/SRR1395072/SRR1395072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASIAI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASIAI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASIAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASIAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIAI-14A-01D	DNA	EFO	SRS637414	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIAI-14A-01D A42815 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42815	SRX597823	"Specific Capture analysis of normal sample TARGET-20-PASIAI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASIAI-14A-01D A42815 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42815_1_lane_dupsFlagged.bam	SRR1395072	@dbgap@:reads/SRP012000/SRS637414/SRX597823/SRR1395072/SRR1395072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIAI-09A-01D_TARGET-20-PASIAI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASIAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASIAI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIAI-14A-01D	DNA	EFO	SRS637414	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIAI-14A-01D A42815 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42815	SRX597823	"Specific Capture analysis of normal sample TARGET-20-PASIAI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASIAI-14A-01D A42815 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42815_1_lane_dupsFlagged.bam	SRR1395072	@dbgap@:reads/SRP012000/SRS637414/SRX597823/SRR1395072/SRR1395072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIAI-09A-01D_TARGET-20-PASIAI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASICM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASICM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASICM-09A-01D	DNA	EFO	SRS635551	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASICM-09A-01D A41796 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41796	SRX593352	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASICM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASICM-09A-01D A41796 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41796_1_lane_dupsFlagged.bam	SRR1385797	@dbgap@:reads/SRP012000/SRS635551/SRX593352/SRR1385797/SRR1385797.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASICM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASICM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASICM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASICM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASICM-09A-01D	DNA	EFO	SRS635551	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASICM-09A-01D A41796 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41796	SRX593352	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASICM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASICM-09A-01D A41796 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41796_1_lane_dupsFlagged.bam	SRR1385797	@dbgap@:reads/SRP012000/SRS635551/SRX593352/SRR1385797/SRR1385797.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASICM-09A-01D_TARGET-20-PASICM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASICM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASICM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASICM-09A-01D	DNA	EFO	SRS635551	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASICM-09A-01D A41796 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41796	SRX593352	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASICM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASICM-09A-01D A41796 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41796_1_lane_dupsFlagged.bam	SRR1385797	@dbgap@:reads/SRP012000/SRS635551/SRX593352/SRR1385797/SRR1385797.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASICM-09A-01D_TARGET-20-PASICM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASICM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASICM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASICM-14A-01D	DNA	EFO	SRS635951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASICM-14A-01D A42497 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42497	SRX593912	"Specific Capture analysis of normal sample TARGET-20-PASICM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASICM-14A-01D A42497 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42497_1_lane_dupsFlagged.bam	SRR1386339	@dbgap@:reads/SRP012000/SRS635951/SRX593912/SRR1386339/SRR1386339.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASICM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASICM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASICM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASICM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASICM-14A-01D	DNA	EFO	SRS635951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASICM-14A-01D A42497 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42497	SRX593912	"Specific Capture analysis of normal sample TARGET-20-PASICM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASICM-14A-01D A42497 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42497_1_lane_dupsFlagged.bam	SRR1386339	@dbgap@:reads/SRP012000/SRS635951/SRX593912/SRR1386339/SRR1386339.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASICM-09A-01D_TARGET-20-PASICM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASICM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASICM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASICM-14A-01D	DNA	EFO	SRS635951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASICM-14A-01D A42497 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42497	SRX593912	"Specific Capture analysis of normal sample TARGET-20-PASICM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASICM-14A-01D A42497 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42497_1_lane_dupsFlagged.bam	SRR1386339	@dbgap@:reads/SRP012000/SRS635951/SRX593912/SRR1386339/SRR1386339.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASICM-09A-01D_TARGET-20-PASICM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-02D	DNA	EFO	SRS270775	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIEJ-09A-02D A31205 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31205	SRX573350	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASIEJ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASIEJ-09A-02D A31205 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31205_1_lane_dupsFlagged.bam	SRR1342667	@dbgap@:reads/SRP012000/SRS270775/SRX573350/SRR1342667/SRR1342667.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASIEJ-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASIEJ-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-02D	DNA	EFO	SRS270775	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIEJ-09A-02D A31205 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31205	SRX573350	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASIEJ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASIEJ-09A-02D A31205 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31205_1_lane_dupsFlagged.bam	SRR1342667	@dbgap@:reads/SRP012000/SRS270775/SRX573350/SRR1342667/SRR1342667.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIEJ-09A-02D_TARGET-20-PASIEJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-02D	DNA	EFO	SRS270775	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIEJ-09A-02D A31205 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31205	SRX573350	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASIEJ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASIEJ-09A-02D A31205 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31205_1_lane_dupsFlagged.bam	SRR1342667	@dbgap@:reads/SRP012000/SRS270775/SRX573350/SRR1342667/SRR1342667.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIEJ-09A-02D_TARGET-20-PASIEJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-01D	DNA	EFO	SRS671234	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIEJ-14A-01D A41703 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41703	SRX666437	"Specific Capture analysis of normal sample TARGET-20-PASIEJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASIEJ-14A-01D A41703 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41703_2_lanes_dupsFlagged.bam	SRR1532816	@dbgap@:reads/SRP012000/SRS671234/SRX666437/SRR1532816/SRR1532816.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASIEJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASIEJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-01D	DNA	EFO	SRS671234	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIEJ-14A-01D A41703 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41703	SRX666437	"Specific Capture analysis of normal sample TARGET-20-PASIEJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASIEJ-14A-01D A41703 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41703_2_lanes_dupsFlagged.bam	SRR1532816	@dbgap@:reads/SRP012000/SRS671234/SRX666437/SRR1532816/SRR1532816.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIEJ-09A-02D_TARGET-20-PASIEJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-14A-01D	DNA	EFO	SRS671234	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIEJ-14A-01D A41703 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41703	SRX666437	"Specific Capture analysis of normal sample TARGET-20-PASIEJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASIEJ-14A-01D A41703 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41703_2_lanes_dupsFlagged.bam	SRR1532816	@dbgap@:reads/SRP012000/SRS671234/SRX666437/SRR1532816/SRR1532816.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIEJ-09A-02D_TARGET-20-PASIEJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-02D	DNA	EFO	SRS628929	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIEP-09A-02D A32267 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32267	SRX574985	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASIEP-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASIEP-09A-02D A32267 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32267_1_lane_dupsFlagged.bam	SRR1346184	@dbgap@:reads/SRP012000/SRS628929/SRX574985/SRR1346184/SRR1346184.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASIEP-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASIEP-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-02D	DNA	EFO	SRS628929	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIEP-09A-02D A32267 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32267	SRX574985	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASIEP-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASIEP-09A-02D A32267 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32267_1_lane_dupsFlagged.bam	SRR1346184	@dbgap@:reads/SRP012000/SRS628929/SRX574985/SRR1346184/SRR1346184.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIEP-09A-02D_TARGET-20-PASIEP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-02D	DNA	EFO	SRS628929	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIEP-09A-02D A32267 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32267	SRX574985	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASIEP-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASIEP-09A-02D A32267 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32267_1_lane_dupsFlagged.bam	SRR1346184	@dbgap@:reads/SRP012000/SRS628929/SRX574985/SRR1346184/SRR1346184.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIEP-09A-02D_TARGET-20-PASIEP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-14A-01D	DNA	EFO	SRS489740	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIEP-14A-01D A42864 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42864	SRX597892	"Specific Capture analysis of normal sample TARGET-20-PASIEP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASIEP-14A-01D A42864 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42864_1_lane_dupsFlagged.bam	SRR1395151	@dbgap@:reads/SRP012000/SRS489740/SRX597892/SRR1395151/SRR1395151.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASIEP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASIEP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-14A-01D	DNA	EFO	SRS489740	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIEP-14A-01D A42864 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42864	SRX597892	"Specific Capture analysis of normal sample TARGET-20-PASIEP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASIEP-14A-01D A42864 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42864_1_lane_dupsFlagged.bam	SRR1395151	@dbgap@:reads/SRP012000/SRS489740/SRX597892/SRR1395151/SRR1395151.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIEP-09A-02D_TARGET-20-PASIEP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-14A-01D	DNA	EFO	SRS489740	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIEP-14A-01D A42864 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42864	SRX597892	"Specific Capture analysis of normal sample TARGET-20-PASIEP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASIEP-14A-01D A42864 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42864_1_lane_dupsFlagged.bam	SRR1395151	@dbgap@:reads/SRP012000/SRS489740/SRX597892/SRR1395151/SRR1395151.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIEP-09A-02D_TARGET-20-PASIEP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIGA-09A-02D	DNA	EFO	SRS628289	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIGA-09A-02D A31212 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31212	SRX573348	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASIGA-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASIGA-09A-02D A31212 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31212_1_lane_dupsFlagged.bam	SRR1342654	@dbgap@:reads/SRP012000/SRS628289/SRX573348/SRR1342654/SRR1342654.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASIGA-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASIGA-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIGA-09A-02D	DNA	EFO	SRS628289	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIGA-09A-02D A31212 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31212	SRX573348	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASIGA-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASIGA-09A-02D A31212 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31212_1_lane_dupsFlagged.bam	SRR1342654	@dbgap@:reads/SRP012000/SRS628289/SRX573348/SRR1342654/SRR1342654.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIGA-09A-02D_TARGET-20-PASIGA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIGA-09A-02D	DNA	EFO	SRS628289	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIGA-09A-02D A31212 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31212	SRX573348	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASIGA-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASIGA-09A-02D A31212 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31212_1_lane_dupsFlagged.bam	SRR1342654	@dbgap@:reads/SRP012000/SRS628289/SRX573348/SRR1342654/SRR1342654.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIGA-09A-02D_TARGET-20-PASIGA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASIGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIGA-14A-01D	DNA	EFO	SRS635657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIGA-14A-01D A41630 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41630	SRX593481	"Specific Capture analysis of normal sample TARGET-20-PASIGA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASIGA-14A-01D A41630 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41630_1_lane_dupsFlagged.bam	SRR1385948	@dbgap@:reads/SRP012000/SRS635657/SRX593481/SRR1385948/SRR1385948.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASIGA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASIGA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASIGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIGA-14A-01D	DNA	EFO	SRS635657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIGA-14A-01D A41630 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41630	SRX593481	"Specific Capture analysis of normal sample TARGET-20-PASIGA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASIGA-14A-01D A41630 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41630_1_lane_dupsFlagged.bam	SRR1385948	@dbgap@:reads/SRP012000/SRS635657/SRX593481/SRR1385948/SRR1385948.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIGA-09A-02D_TARGET-20-PASIGA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASIGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIGA-14A-01D	DNA	EFO	SRS635657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIGA-14A-01D A41630 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41630	SRX593481	"Specific Capture analysis of normal sample TARGET-20-PASIGA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASIGA-14A-01D A41630 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41630_1_lane_dupsFlagged.bam	SRR1385948	@dbgap@:reads/SRP012000/SRS635657/SRX593481/SRR1385948/SRR1385948.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIGA-09A-02D_TARGET-20-PASIGA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01D	DNA	EFO	SRS628328	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASILA-09A-01D A31260 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31260	SRX573406	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASILA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASILA-09A-01D A31260 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31260_1_lane_dupsFlagged.bam	SRR1342636	@dbgap@:reads/SRP012000/SRS628328/SRX573406/SRR1342636/SRR1342636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASILA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASILA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01D	DNA	EFO	SRS628328	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASILA-09A-01D A31260 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31260	SRX573406	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASILA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASILA-09A-01D A31260 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31260_1_lane_dupsFlagged.bam	SRR1342636	@dbgap@:reads/SRP012000/SRS628328/SRX573406/SRR1342636/SRR1342636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASILA-09A-01D_TARGET-20-PASILA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01D	DNA	EFO	SRS628328	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASILA-09A-01D A31260 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31260	SRX573406	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASILA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASILA-09A-01D A31260 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31260_1_lane_dupsFlagged.bam	SRR1342636	@dbgap@:reads/SRP012000/SRS628328/SRX573406/SRR1342636/SRR1342636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASILA-09A-01D_TARGET-20-PASILA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-14A-01D	DNA	EFO	SRS635900	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASILA-14A-01D A42500 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42500	SRX593859	"Specific Capture analysis of normal sample TARGET-20-PASILA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASILA-14A-01D A42500 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42500_1_lane_dupsFlagged.bam	SRR1386335	@dbgap@:reads/SRP012000/SRS635900/SRX593859/SRR1386335/SRR1386335.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASILA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASILA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-14A-01D	DNA	EFO	SRS635900	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASILA-14A-01D A42500 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42500	SRX593859	"Specific Capture analysis of normal sample TARGET-20-PASILA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASILA-14A-01D A42500 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42500_1_lane_dupsFlagged.bam	SRR1386335	@dbgap@:reads/SRP012000/SRS635900/SRX593859/SRR1386335/SRR1386335.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASILA-09A-01D_TARGET-20-PASILA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-14A-01D	DNA	EFO	SRS635900	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASILA-14A-01D A42500 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42500	SRX593859	"Specific Capture analysis of normal sample TARGET-20-PASILA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASILA-14A-01D A42500 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42500_1_lane_dupsFlagged.bam	SRR1386335	@dbgap@:reads/SRP012000/SRS635900/SRX593859/SRR1386335/SRR1386335.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASILA-09A-01D_TARGET-20-PASILA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASINA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASINA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINA-09A-01D	DNA	EFO	SRS635525	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASINA-09A-01D A41797 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41797	SRX593296	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASINA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASINA-09A-01D A41797 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41797_1_lane_dupsFlagged.bam	SRR1385832	@dbgap@:reads/SRP012000/SRS635525/SRX593296/SRR1385832/SRR1385832.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASINA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASINA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-03D	DNA	EFO	SRS637565	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASINN-04A-03D A42719 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42719	SRX598005	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASINN-04A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASINN-04A-03D A42719 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42719_1_lane_dupsFlagged.bam	SRR1395234	@dbgap@:reads/SRP012000/SRS637565/SRX598005/SRR1395234/SRR1395234.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASINN-04A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASINN-04A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-03D	DNA	EFO	SRS637565	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASINN-04A-03D A42719 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42719	SRX598005	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASINN-04A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASINN-04A-03D A42719 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42719_1_lane_dupsFlagged.bam	SRR1395234	@dbgap@:reads/SRP012000/SRS637565/SRX598005/SRR1395234/SRR1395234.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASINN-04A-03D_TARGET-20-PASINN-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-03D	DNA	EFO	SRS637565	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASINN-04A-03D A42719 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42719	SRX598005	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASINN-04A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASINN-04A-03D A42719 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42719_1_lane_dupsFlagged.bam	SRR1395234	@dbgap@:reads/SRP012000/SRS637565/SRX598005/SRR1395234/SRR1395234.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASINN-04A-03D_TARGET-20-PASINN-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-09A-02D	DNA	EFO	SRS628973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASINN-09A-02D A32268 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32268	SRX575030	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASINN-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASINN-09A-02D A32268 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32268_1_lane_dupsFlagged.bam	SRR1346188	@dbgap@:reads/SRP012000/SRS628973/SRX575030/SRR1346188/SRR1346188.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASINN-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASINN-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-09A-02D	DNA	EFO	SRS628973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASINN-09A-02D A32268 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32268	SRX575030	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASINN-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASINN-09A-02D A32268 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32268_1_lane_dupsFlagged.bam	SRR1346188	@dbgap@:reads/SRP012000/SRS628973/SRX575030/SRR1346188/SRR1346188.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASINN-09A-02D_TARGET-20-PASINN-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-09A-02D	DNA	EFO	SRS628973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASINN-09A-02D A32268 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32268	SRX575030	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASINN-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASINN-09A-02D A32268 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32268_1_lane_dupsFlagged.bam	SRR1346188	@dbgap@:reads/SRP012000/SRS628973/SRX575030/SRR1346188/SRR1346188.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASINN-09A-02D_TARGET-20-PASINN-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-02D	DNA	EFO	SRS635892	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASINN-14A-02D A42498 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42498	SRX593852	"Specific Capture analysis of normal sample TARGET-20-PASINN-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASINN-14A-02D A42498 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42498_1_lane_dupsFlagged.bam	SRR1386340	@dbgap@:reads/SRP012000/SRS635892/SRX593852/SRR1386340/SRR1386340.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASINN-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASINN-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-02D	DNA	EFO	SRS635892	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASINN-14A-02D A42498 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42498	SRX593852	"Specific Capture analysis of normal sample TARGET-20-PASINN-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASINN-14A-02D A42498 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42498_1_lane_dupsFlagged.bam	SRR1386340	@dbgap@:reads/SRP012000/SRS635892/SRX593852/SRR1386340/SRR1386340.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASINN-04A-03D_TARGET-20-PASINN-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-02D	DNA	EFO	SRS635892	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASINN-14A-02D A42498 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42498	SRX593852	"Specific Capture analysis of normal sample TARGET-20-PASINN-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASINN-14A-02D A42498 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42498_1_lane_dupsFlagged.bam	SRR1386340	@dbgap@:reads/SRP012000/SRS635892/SRX593852/SRR1386340/SRR1386340.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASINN-04A-03D_TARGET-20-PASINN-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-02D	DNA	EFO	SRS635892	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASINN-14A-02D A42498 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42498	SRX593852	"Specific Capture analysis of normal sample TARGET-20-PASINN-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASINN-14A-02D A42498 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42498_1_lane_dupsFlagged.bam	SRR1386340	@dbgap@:reads/SRP012000/SRS635892/SRX593852/SRR1386340/SRR1386340.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASINN-09A-02D_TARGET-20-PASINN-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-14A-02D	DNA	EFO	SRS635892	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASINN-14A-02D A42498 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42498	SRX593852	"Specific Capture analysis of normal sample TARGET-20-PASINN-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASINN-14A-02D A42498 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42498_1_lane_dupsFlagged.bam	SRR1386340	@dbgap@:reads/SRP012000/SRS635892/SRX593852/SRR1386340/SRR1386340.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASINN-09A-02D_TARGET-20-PASINN-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASIZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIZX-09A-01D	DNA	EFO	SRS628273	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIZX-09A-01D A31261 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31261	SRX573326	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASIZX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASIZX-09A-01D A31261 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31261_1_lane_dupsFlagged.bam	SRR1342645	@dbgap@:reads/SRP012000/SRS628273/SRX573326/SRR1342645/SRR1342645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASIZX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASIZX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASIZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIZX-09A-01D	DNA	EFO	SRS628273	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIZX-09A-01D A31261 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31261	SRX573326	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASIZX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASIZX-09A-01D A31261 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31261_1_lane_dupsFlagged.bam	SRR1342645	@dbgap@:reads/SRP012000/SRS628273/SRX573326/SRR1342645/SRR1342645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIZX-09A-01D_TARGET-20-PASIZX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASIZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIZX-09A-01D	DNA	EFO	SRS628273	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIZX-09A-01D A31261 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31261	SRX573326	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASIZX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASIZX-09A-01D A31261 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31261_1_lane_dupsFlagged.bam	SRR1342645	@dbgap@:reads/SRP012000/SRS628273/SRX573326/SRR1342645/SRR1342645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIZX-09A-01D_TARGET-20-PASIZX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASIZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIZX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIZX-14A-01D	DNA	EFO	SRS637415	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIZX-14A-01D A42816 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42816	SRX597824	"Specific Capture analysis of normal sample TARGET-20-PASIZX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASIZX-14A-01D A42816 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42816_1_lane_dupsFlagged.bam	SRR1395119	@dbgap@:reads/SRP012000/SRS637415/SRX597824/SRR1395119/SRR1395119.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASIZX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASIZX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASIZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIZX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIZX-14A-01D	DNA	EFO	SRS637415	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIZX-14A-01D A42816 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42816	SRX597824	"Specific Capture analysis of normal sample TARGET-20-PASIZX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASIZX-14A-01D A42816 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42816_1_lane_dupsFlagged.bam	SRR1395119	@dbgap@:reads/SRP012000/SRS637415/SRX597824/SRR1395119/SRR1395119.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIZX-09A-01D_TARGET-20-PASIZX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASIZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIZX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIZX-14A-01D	DNA	EFO	SRS637415	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIZX-14A-01D A42816 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42816	SRX597824	"Specific Capture analysis of normal sample TARGET-20-PASIZX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASIZX-14A-01D A42816 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42816_1_lane_dupsFlagged.bam	SRR1395119	@dbgap@:reads/SRP012000/SRS637415/SRX597824/SRR1395119/SRR1395119.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASIZX-09A-01D_TARGET-20-PASIZX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJCL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJCL-03A-01D	DNA	EFO	SRS633645	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJCL-03A-01D A33442 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33442	SRX587939	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJCL-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASJCL-03A-01D A33442 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33442_1_lane_dupsFlagged.bam	SRR1373836	@dbgap@:reads/SRP012000/SRS633645/SRX587939/SRR1373836/SRR1373836.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJCL-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJCL-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASJEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJEJ-09A-02D	DNA	EFO	SRS628899	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJEJ-09A-02D A32269 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32269	SRX574955	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJEJ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASJEJ-09A-02D A32269 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32269_1_lane_dupsFlagged.bam	SRR1346138	@dbgap@:reads/SRP012000/SRS628899/SRX574955/SRR1346138/SRR1346138.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJEJ-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJEJ-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASJEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJEJ-09A-02D	DNA	EFO	SRS628899	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJEJ-09A-02D A32269 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32269	SRX574955	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJEJ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASJEJ-09A-02D A32269 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32269_1_lane_dupsFlagged.bam	SRR1346138	@dbgap@:reads/SRP012000/SRS628899/SRX574955/SRR1346138/SRR1346138.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJEJ-09A-02D_TARGET-20-PASJEJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJEJ-09A-02D	DNA	EFO	SRS628899	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJEJ-09A-02D A32269 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32269	SRX574955	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJEJ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASJEJ-09A-02D A32269 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32269_1_lane_dupsFlagged.bam	SRR1346138	@dbgap@:reads/SRP012000/SRS628899/SRX574955/SRR1346138/SRR1346138.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJEJ-09A-02D_TARGET-20-PASJEJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJEJ-14A-01D	DNA	EFO	SRS635699	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJEJ-14A-01D A41631 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41631	SRX593524	"Specific Capture analysis of normal sample TARGET-20-PASJEJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASJEJ-14A-01D A41631 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41631_1_lane_dupsFlagged.bam	SRR1385944	@dbgap@:reads/SRP012000/SRS635699/SRX593524/SRR1385944/SRR1385944.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJEJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJEJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASJEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJEJ-14A-01D	DNA	EFO	SRS635699	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJEJ-14A-01D A41631 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41631	SRX593524	"Specific Capture analysis of normal sample TARGET-20-PASJEJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASJEJ-14A-01D A41631 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41631_1_lane_dupsFlagged.bam	SRR1385944	@dbgap@:reads/SRP012000/SRS635699/SRX593524/SRR1385944/SRR1385944.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJEJ-09A-02D_TARGET-20-PASJEJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJEJ-14A-01D	DNA	EFO	SRS635699	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJEJ-14A-01D A41631 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41631	SRX593524	"Specific Capture analysis of normal sample TARGET-20-PASJEJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASJEJ-14A-01D A41631 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41631_1_lane_dupsFlagged.bam	SRR1385944	@dbgap@:reads/SRP012000/SRS635699/SRX593524/SRR1385944/SRR1385944.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJEJ-09A-02D_TARGET-20-PASJEJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-09A-01D	DNA	EFO	SRS628969	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJIM-09A-01D A32270 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32270	SRX575025	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJIM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASJIM-09A-01D A32270 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32270_1_lane_dupsFlagged.bam	SRR1346196	@dbgap@:reads/SRP012000/SRS628969/SRX575025/SRR1346196/SRR1346196.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJIM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJIM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-09A-01D	DNA	EFO	SRS628969	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJIM-09A-01D A32270 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32270	SRX575025	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJIM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASJIM-09A-01D A32270 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32270_1_lane_dupsFlagged.bam	SRR1346196	@dbgap@:reads/SRP012000/SRS628969/SRX575025/SRR1346196/SRR1346196.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJIM-09A-01D_TARGET-20-PASJIM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-09A-01D	DNA	EFO	SRS628969	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJIM-09A-01D A32270 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32270	SRX575025	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJIM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASJIM-09A-01D A32270 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32270_1_lane_dupsFlagged.bam	SRR1346196	@dbgap@:reads/SRP012000/SRS628969/SRX575025/SRR1346196/SRR1346196.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJIM-09A-01D_TARGET-20-PASJIM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-14A-01D	DNA	EFO	SRS635950	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJIM-14A-01D A42499 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42499	SRX593911	"Specific Capture analysis of normal sample TARGET-20-PASJIM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASJIM-14A-01D A42499 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42499_1_lane_dupsFlagged.bam	SRR1386380	@dbgap@:reads/SRP012000/SRS635950/SRX593911/SRR1386380/SRR1386380.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJIM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJIM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-14A-01D	DNA	EFO	SRS635950	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJIM-14A-01D A42499 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42499	SRX593911	"Specific Capture analysis of normal sample TARGET-20-PASJIM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASJIM-14A-01D A42499 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42499_1_lane_dupsFlagged.bam	SRR1386380	@dbgap@:reads/SRP012000/SRS635950/SRX593911/SRR1386380/SRR1386380.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJIM-09A-01D_TARGET-20-PASJIM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJIM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJIM-14A-01D	DNA	EFO	SRS635950	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJIM-14A-01D A42499 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42499	SRX593911	"Specific Capture analysis of normal sample TARGET-20-PASJIM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASJIM-14A-01D A42499 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42499_1_lane_dupsFlagged.bam	SRR1386380	@dbgap@:reads/SRP012000/SRS635950/SRX593911/SRR1386380/SRR1386380.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJIM-09A-01D_TARGET-20-PASJIM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJNM-09A-01D	DNA	EFO	SRS633639	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJNM-09A-01D A33423 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33423	SRX587933	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJNM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASJNM-09A-01D A33423 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33423_1_lane_dupsFlagged.bam	SRR1373828	@dbgap@:reads/SRP012000/SRS633639/SRX587933/SRR1373828/SRR1373828.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJNM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJNM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASJNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJNM-09A-01D	DNA	EFO	SRS633639	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJNM-09A-01D A33423 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33423	SRX587933	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJNM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASJNM-09A-01D A33423 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33423_1_lane_dupsFlagged.bam	SRR1373828	@dbgap@:reads/SRP012000/SRS633639/SRX587933/SRR1373828/SRR1373828.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJNM-09A-01D_TARGET-20-PASJNM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJNM-09A-01D	DNA	EFO	SRS633639	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJNM-09A-01D A33423 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33423	SRX587933	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJNM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASJNM-09A-01D A33423 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33423_1_lane_dupsFlagged.bam	SRR1373828	@dbgap@:reads/SRP012000/SRS633639/SRX587933/SRR1373828/SRR1373828.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJNM-09A-01D_TARGET-20-PASJNM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJNM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJNM-14A-01D	DNA	EFO	SRS635698	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJNM-14A-01D A41633 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41633	SRX593523	"Specific Capture analysis of normal sample TARGET-20-PASJNM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASJNM-14A-01D A41633 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41633_1_lane_dupsFlagged.bam	SRR1385968	@dbgap@:reads/SRP012000/SRS635698/SRX593523/SRR1385968/SRR1385968.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJNM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJNM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASJNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJNM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJNM-14A-01D	DNA	EFO	SRS635698	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJNM-14A-01D A41633 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41633	SRX593523	"Specific Capture analysis of normal sample TARGET-20-PASJNM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASJNM-14A-01D A41633 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41633_1_lane_dupsFlagged.bam	SRR1385968	@dbgap@:reads/SRP012000/SRS635698/SRX593523/SRR1385968/SRR1385968.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJNM-09A-01D_TARGET-20-PASJNM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJNM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJNM-14A-01D	DNA	EFO	SRS635698	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJNM-14A-01D A41633 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41633	SRX593523	"Specific Capture analysis of normal sample TARGET-20-PASJNM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASJNM-14A-01D A41633 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41633_1_lane_dupsFlagged.bam	SRR1385968	@dbgap@:reads/SRP012000/SRS635698/SRX593523/SRR1385968/SRR1385968.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJNM-09A-01D_TARGET-20-PASJNM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJPW-09A-01D	DNA	EFO	SRS635552	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJPW-09A-01D A41798 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41798	SRX593351	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJPW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASJPW-09A-01D A41798 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41798_1_lane_dupsFlagged.bam	SRR1385815	@dbgap@:reads/SRP012000/SRS635552/SRX593351/SRR1385815/SRR1385815.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJPW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJPW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASJPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJPW-09A-01D	DNA	EFO	SRS635552	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJPW-09A-01D A41798 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41798	SRX593351	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJPW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASJPW-09A-01D A41798 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41798_1_lane_dupsFlagged.bam	SRR1385815	@dbgap@:reads/SRP012000/SRS635552/SRX593351/SRR1385815/SRR1385815.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJPW-09A-01D_TARGET-20-PASJPW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJPW-09A-01D	DNA	EFO	SRS635552	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJPW-09A-01D A41798 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41798	SRX593351	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJPW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASJPW-09A-01D A41798 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41798_1_lane_dupsFlagged.bam	SRR1385815	@dbgap@:reads/SRP012000/SRS635552/SRX593351/SRR1385815/SRR1385815.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJPW-09A-01D_TARGET-20-PASJPW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJPW-14A-01D	DNA	EFO	SRS635686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJPW-14A-01D A41635 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41635	SRX593510	"Specific Capture analysis of normal sample TARGET-20-PASJPW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASJPW-14A-01D A41635 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41635_1_lane_dupsFlagged.bam	SRR1385961	@dbgap@:reads/SRP012000/SRS635686/SRX593510/SRR1385961/SRR1385961.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJPW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJPW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASJPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJPW-14A-01D	DNA	EFO	SRS635686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJPW-14A-01D A41635 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41635	SRX593510	"Specific Capture analysis of normal sample TARGET-20-PASJPW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASJPW-14A-01D A41635 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41635_1_lane_dupsFlagged.bam	SRR1385961	@dbgap@:reads/SRP012000/SRS635686/SRX593510/SRR1385961/SRR1385961.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJPW-09A-01D_TARGET-20-PASJPW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJPW-14A-01D	DNA	EFO	SRS635686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJPW-14A-01D A41635 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41635	SRX593510	"Specific Capture analysis of normal sample TARGET-20-PASJPW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASJPW-14A-01D A41635 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41635_1_lane_dupsFlagged.bam	SRR1385961	@dbgap@:reads/SRP012000/SRS635686/SRX593510/SRR1385961/SRR1385961.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJPW-09A-01D_TARGET-20-PASJPW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJRD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJRD-03A-01D	DNA	EFO	SRS635536	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJRD-03A-01D A41799 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41799	SRX593315	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJRD-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASJRD-03A-01D A41799 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41799_1_lane_dupsFlagged.bam	SRR1385783	@dbgap@:reads/SRP012000/SRS635536/SRX593315/SRR1385783/SRR1385783.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJRD-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJRD-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASJRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJRD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJRD-03A-01D	DNA	EFO	SRS635536	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJRD-03A-01D A41799 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41799	SRX593315	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJRD-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASJRD-03A-01D A41799 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41799_1_lane_dupsFlagged.bam	SRR1385783	@dbgap@:reads/SRP012000/SRS635536/SRX593315/SRR1385783/SRR1385783.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJRD-03A-01D_TARGET-20-PASJRD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJRD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJRD-03A-01D	DNA	EFO	SRS635536	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJRD-03A-01D A41799 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41799	SRX593315	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJRD-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASJRD-03A-01D A41799 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41799_1_lane_dupsFlagged.bam	SRR1385783	@dbgap@:reads/SRP012000/SRS635536/SRX593315/SRR1385783/SRR1385783.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJRD-03A-01D_TARGET-20-PASJRD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJRD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJRD-14A-01D	DNA	EFO	SRS635705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJRD-14A-01D A41632 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41632	SRX593530	"Specific Capture analysis of normal sample TARGET-20-PASJRD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASJRD-14A-01D A41632 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41632_1_lane_dupsFlagged.bam	SRR1385973	@dbgap@:reads/SRP012000/SRS635705/SRX593530/SRR1385973/SRR1385973.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJRD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJRD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASJRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJRD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJRD-14A-01D	DNA	EFO	SRS635705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJRD-14A-01D A41632 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41632	SRX593530	"Specific Capture analysis of normal sample TARGET-20-PASJRD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASJRD-14A-01D A41632 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41632_1_lane_dupsFlagged.bam	SRR1385973	@dbgap@:reads/SRP012000/SRS635705/SRX593530/SRR1385973/SRR1385973.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJRD-03A-01D_TARGET-20-PASJRD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJRD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJRD-14A-01D	DNA	EFO	SRS635705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJRD-14A-01D A41632 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41632	SRX593530	"Specific Capture analysis of normal sample TARGET-20-PASJRD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASJRD-14A-01D A41632 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41632_1_lane_dupsFlagged.bam	SRR1385973	@dbgap@:reads/SRP012000/SRS635705/SRX593530/SRR1385973/SRR1385973.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJRD-03A-01D_TARGET-20-PASJRD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-02D	DNA	EFO	SRS635579	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJTM-09A-02D A41952 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41952	SRX593398	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJTM-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASJTM-09A-02D A41952 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41952_1_lane_dupsFlagged.bam	SRR1385892	@dbgap@:reads/SRP012000/SRS635579/SRX593398/SRR1385892/SRR1385892.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJTM-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJTM-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-02D	DNA	EFO	SRS635579	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJTM-09A-02D A41952 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41952	SRX593398	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJTM-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASJTM-09A-02D A41952 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41952_1_lane_dupsFlagged.bam	SRR1385892	@dbgap@:reads/SRP012000/SRS635579/SRX593398/SRR1385892/SRR1385892.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJTM-09A-02D_TARGET-20-PASJTM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-02D	DNA	EFO	SRS635579	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJTM-09A-02D A41952 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41952	SRX593398	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJTM-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASJTM-09A-02D A41952 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41952_1_lane_dupsFlagged.bam	SRR1385892	@dbgap@:reads/SRP012000/SRS635579/SRX593398/SRR1385892/SRR1385892.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJTM-09A-02D_TARGET-20-PASJTM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-14A-01D	DNA	EFO	SRS489742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJTM-14A-01D A42603 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42603	SRX593968	"Specific Capture analysis of normal sample TARGET-20-PASJTM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASJTM-14A-01D A42603 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42603_1_lane_dupsFlagged.bam	SRR1386474	@dbgap@:reads/SRP012000/SRS489742/SRX593968/SRR1386474/SRR1386474.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJTM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJTM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-14A-01D	DNA	EFO	SRS489742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJTM-14A-01D A42603 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42603	SRX593968	"Specific Capture analysis of normal sample TARGET-20-PASJTM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASJTM-14A-01D A42603 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42603_1_lane_dupsFlagged.bam	SRR1386474	@dbgap@:reads/SRP012000/SRS489742/SRX593968/SRR1386474/SRR1386474.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJTM-09A-02D_TARGET-20-PASJTM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-14A-01D	DNA	EFO	SRS489742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJTM-14A-01D A42603 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42603	SRX593968	"Specific Capture analysis of normal sample TARGET-20-PASJTM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASJTM-14A-01D A42603 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42603_1_lane_dupsFlagged.bam	SRR1386474	@dbgap@:reads/SRP012000/SRS489742/SRX593968/SRR1386474/SRR1386474.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJTM-09A-02D_TARGET-20-PASJTM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJXN-09A-01D	DNA	EFO	SRS635558	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJXN-09A-01D A41800 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41800	SRX593368	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJXN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASJXN-09A-01D A41800 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41800_1_lane_dupsFlagged.bam	SRR1385794	@dbgap@:reads/SRP012000/SRS635558/SRX593368/SRR1385794/SRR1385794.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJXN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJXN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASJXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJXN-09A-01D	DNA	EFO	SRS635558	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJXN-09A-01D A41800 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41800	SRX593368	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJXN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASJXN-09A-01D A41800 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41800_1_lane_dupsFlagged.bam	SRR1385794	@dbgap@:reads/SRP012000/SRS635558/SRX593368/SRR1385794/SRR1385794.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJXN-09A-01D_TARGET-20-PASJXN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJXN-09A-01D	DNA	EFO	SRS635558	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJXN-09A-01D A41800 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41800	SRX593368	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJXN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASJXN-09A-01D A41800 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41800_1_lane_dupsFlagged.bam	SRR1385794	@dbgap@:reads/SRP012000/SRS635558/SRX593368/SRR1385794/SRR1385794.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJXN-09A-01D_TARGET-20-PASJXN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJXN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJXN-14A-01D	DNA	EFO	SRS635683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJXN-14A-01D A41634 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41634	SRX593507	"Specific Capture analysis of normal sample TARGET-20-PASJXN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASJXN-14A-01D A41634 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41634_1_lane_dupsFlagged.bam	SRR1386013	@dbgap@:reads/SRP012000/SRS635683/SRX593507/SRR1386013/SRR1386013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJXN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJXN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASJXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJXN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJXN-14A-01D	DNA	EFO	SRS635683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJXN-14A-01D A41634 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41634	SRX593507	"Specific Capture analysis of normal sample TARGET-20-PASJXN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASJXN-14A-01D A41634 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41634_1_lane_dupsFlagged.bam	SRR1386013	@dbgap@:reads/SRP012000/SRS635683/SRX593507/SRR1386013/SRR1386013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJXN-09A-01D_TARGET-20-PASJXN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJXN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJXN-14A-01D	DNA	EFO	SRS635683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJXN-14A-01D A41634 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41634	SRX593507	"Specific Capture analysis of normal sample TARGET-20-PASJXN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASJXN-14A-01D A41634 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41634_1_lane_dupsFlagged.bam	SRR1386013	@dbgap@:reads/SRP012000/SRS635683/SRX593507/SRR1386013/SRR1386013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJXN-09A-01D_TARGET-20-PASJXN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJYX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJYX-04A-01D	DNA	EFO	SRS637346	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJYX-04A-01D A42206 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42206	SRX597739	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJYX-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASJYX-04A-01D A42206 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42206_1_lane_dupsFlagged.bam	SRR1394968	@dbgap@:reads/SRP012000/SRS637346/SRX597739/SRR1394968/SRR1394968.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJYX-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJYX-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASJYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJYX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJYX-04A-01D	DNA	EFO	SRS637346	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJYX-04A-01D A42206 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42206	SRX597739	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJYX-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASJYX-04A-01D A42206 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42206_1_lane_dupsFlagged.bam	SRR1394968	@dbgap@:reads/SRP012000/SRS637346/SRX597739/SRR1394968/SRR1394968.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJYX-04A-01D_TARGET-20-PASJYX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJYX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJYX-04A-01D	DNA	EFO	SRS637346	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJYX-04A-01D A42206 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42206	SRX597739	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJYX-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASJYX-04A-01D A42206 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42206_1_lane_dupsFlagged.bam	SRR1394968	@dbgap@:reads/SRP012000/SRS637346/SRX597739/SRR1394968/SRR1394968.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJYX-04A-01D_TARGET-20-PASJYX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJYX-09A-01D	DNA	EFO	SRS628295	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJYX-09A-01D A31231 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31231	SRX573354	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJYX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASJYX-09A-01D A31231 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31231_1_lane_dupsFlagged.bam	SRR1342646	@dbgap@:reads/SRP012000/SRS628295/SRX573354/SRR1342646/SRR1342646.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJYX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJYX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASJYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJYX-09A-01D	DNA	EFO	SRS628295	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJYX-09A-01D A31231 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31231	SRX573354	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJYX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASJYX-09A-01D A31231 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31231_1_lane_dupsFlagged.bam	SRR1342646	@dbgap@:reads/SRP012000/SRS628295/SRX573354/SRR1342646/SRR1342646.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJYX-09A-01D_TARGET-20-PASJYX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJYX-09A-01D	DNA	EFO	SRS628295	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJYX-09A-01D A31231 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31231	SRX573354	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJYX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASJYX-09A-01D A31231 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31231_1_lane_dupsFlagged.bam	SRR1342646	@dbgap@:reads/SRP012000/SRS628295/SRX573354/SRR1342646/SRR1342646.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJYX-09A-01D_TARGET-20-PASJYX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJYX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJYX-14A-01D	DNA	EFO	SRS637454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJYX-14A-01D A42943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42943	SRX597871	"Specific Capture analysis of normal sample TARGET-20-PASJYX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASJYX-14A-01D A42943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42943_1_lane_dupsFlagged.bam	SRR1395205	@dbgap@:reads/SRP012000/SRS637454/SRX597871/SRR1395205/SRR1395205.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJYX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJYX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASJYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJYX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJYX-14A-01D	DNA	EFO	SRS637454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJYX-14A-01D A42943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42943	SRX597871	"Specific Capture analysis of normal sample TARGET-20-PASJYX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASJYX-14A-01D A42943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42943_1_lane_dupsFlagged.bam	SRR1395205	@dbgap@:reads/SRP012000/SRS637454/SRX597871/SRR1395205/SRR1395205.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJYX-04A-01D_TARGET-20-PASJYX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJYX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJYX-14A-01D	DNA	EFO	SRS637454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJYX-14A-01D A42943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42943	SRX597871	"Specific Capture analysis of normal sample TARGET-20-PASJYX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASJYX-14A-01D A42943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42943_1_lane_dupsFlagged.bam	SRR1395205	@dbgap@:reads/SRP012000/SRS637454/SRX597871/SRR1395205/SRR1395205.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJYX-04A-01D_TARGET-20-PASJYX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJYX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJYX-14A-01D	DNA	EFO	SRS637454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJYX-14A-01D A42943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42943	SRX597871	"Specific Capture analysis of normal sample TARGET-20-PASJYX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASJYX-14A-01D A42943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42943_1_lane_dupsFlagged.bam	SRR1395205	@dbgap@:reads/SRP012000/SRS637454/SRX597871/SRR1395205/SRR1395205.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJYX-09A-01D_TARGET-20-PASJYX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJYX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJYX-14A-01D	DNA	EFO	SRS637454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJYX-14A-01D A42943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42943	SRX597871	"Specific Capture analysis of normal sample TARGET-20-PASJYX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASJYX-14A-01D A42943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42943_1_lane_dupsFlagged.bam	SRR1395205	@dbgap@:reads/SRP012000/SRS637454/SRX597871/SRR1395205/SRR1395205.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJYX-09A-01D_TARGET-20-PASJYX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJZX-09A-01D	DNA	EFO	SRS633661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJZX-09A-01D A33424 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33424	SRX587955	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJZX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASJZX-09A-01D A33424 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33424_1_lane_dupsFlagged.bam	SRR1373832	@dbgap@:reads/SRP012000/SRS633661/SRX587955/SRR1373832/SRR1373832.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJZX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJZX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASJZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJZX-09A-01D	DNA	EFO	SRS633661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJZX-09A-01D A33424 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33424	SRX587955	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJZX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASJZX-09A-01D A33424 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33424_1_lane_dupsFlagged.bam	SRR1373832	@dbgap@:reads/SRP012000/SRS633661/SRX587955/SRR1373832/SRR1373832.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJZX-09A-01D_TARGET-20-PASJZX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJZX-09A-01D	DNA	EFO	SRS633661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJZX-09A-01D A33424 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33424	SRX587955	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASJZX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASJZX-09A-01D A33424 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33424_1_lane_dupsFlagged.bam	SRR1373832	@dbgap@:reads/SRP012000/SRS633661/SRX587955/SRR1373832/SRR1373832.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJZX-09A-01D_TARGET-20-PASJZX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASJZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJZX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJZX-14A-01D	DNA	EFO	SRS637432	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJZX-14A-01D A42817 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42817	SRX597841	"Specific Capture analysis of normal sample TARGET-20-PASJZX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASJZX-14A-01D A42817 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42817_1_lane_dupsFlagged.bam	SRR1395087	@dbgap@:reads/SRP012000/SRS637432/SRX597841/SRR1395087/SRR1395087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASJZX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASJZX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASJZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJZX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJZX-14A-01D	DNA	EFO	SRS637432	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJZX-14A-01D A42817 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42817	SRX597841	"Specific Capture analysis of normal sample TARGET-20-PASJZX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASJZX-14A-01D A42817 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42817_1_lane_dupsFlagged.bam	SRR1395087	@dbgap@:reads/SRP012000/SRS637432/SRX597841/SRR1395087/SRR1395087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJZX-09A-01D_TARGET-20-PASJZX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASJZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASJZX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJZX-14A-01D	DNA	EFO	SRS637432	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJZX-14A-01D A42817 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42817	SRX597841	"Specific Capture analysis of normal sample TARGET-20-PASJZX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASJZX-14A-01D A42817 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42817_1_lane_dupsFlagged.bam	SRR1395087	@dbgap@:reads/SRP012000/SRS637432/SRX597841/SRR1395087/SRR1395087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASJZX-09A-01D_TARGET-20-PASJZX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASKAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKAS-09A-01D	DNA	EFO	SRS635547	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKAS-09A-01D A41801 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41801	SRX593346	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKAS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASKAS-09A-01D A41801 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41801_1_lane_dupsFlagged.bam	SRR1385805	@dbgap@:reads/SRP012000/SRS635547/SRX593346/SRR1385805/SRR1385805.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASKAS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASKAS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASKAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKAS-09A-01D	DNA	EFO	SRS635547	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKAS-09A-01D A41801 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41801	SRX593346	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKAS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASKAS-09A-01D A41801 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41801_1_lane_dupsFlagged.bam	SRR1385805	@dbgap@:reads/SRP012000/SRS635547/SRX593346/SRR1385805/SRR1385805.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKAS-09A-01D_TARGET-20-PASKAS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASKAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKAS-09A-01D	DNA	EFO	SRS635547	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKAS-09A-01D A41801 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41801	SRX593346	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKAS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASKAS-09A-01D A41801 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41801_1_lane_dupsFlagged.bam	SRR1385805	@dbgap@:reads/SRP012000/SRS635547/SRX593346/SRR1385805/SRR1385805.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKAS-09A-01D_TARGET-20-PASKAS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASKAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKAS-14A-01D	DNA	EFO	SRS635640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKAS-14A-01D A41636 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41636	SRX593462	"Specific Capture analysis of normal sample TARGET-20-PASKAS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASKAS-14A-01D A41636 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41636_1_lane_dupsFlagged.bam	SRR1385929	@dbgap@:reads/SRP012000/SRS635640/SRX593462/SRR1385929/SRR1385929.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASKAS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASKAS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASKAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKAS-14A-01D	DNA	EFO	SRS635640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKAS-14A-01D A41636 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41636	SRX593462	"Specific Capture analysis of normal sample TARGET-20-PASKAS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASKAS-14A-01D A41636 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41636_1_lane_dupsFlagged.bam	SRR1385929	@dbgap@:reads/SRP012000/SRS635640/SRX593462/SRR1385929/SRR1385929.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKAS-09A-01D_TARGET-20-PASKAS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASKAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKAS-14A-01D	DNA	EFO	SRS635640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKAS-14A-01D A41636 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41636	SRX593462	"Specific Capture analysis of normal sample TARGET-20-PASKAS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASKAS-14A-01D A41636 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41636_1_lane_dupsFlagged.bam	SRR1385929	@dbgap@:reads/SRP012000/SRS635640/SRX593462/SRR1385929/SRR1385929.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKAS-09A-01D_TARGET-20-PASKAS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASKFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKFN-09A-01D	DNA	EFO	SRS635573	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKFN-09A-01D A41937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41937	SRX593392	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKFN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASKFN-09A-01D A41937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41937_1_lane_dupsFlagged.bam	SRR1385863	@dbgap@:reads/SRP012000/SRS635573/SRX593392/SRR1385863/SRR1385863.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASKFN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASKFN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASKFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKFN-09A-01D	DNA	EFO	SRS635573	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKFN-09A-01D A41937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41937	SRX593392	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKFN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASKFN-09A-01D A41937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41937_1_lane_dupsFlagged.bam	SRR1385863	@dbgap@:reads/SRP012000/SRS635573/SRX593392/SRR1385863/SRR1385863.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKFN-09A-01D_TARGET-20-PASKFN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASKFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKFN-09A-01D	DNA	EFO	SRS635573	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKFN-09A-01D A41937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41937	SRX593392	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKFN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASKFN-09A-01D A41937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41937_1_lane_dupsFlagged.bam	SRR1385863	@dbgap@:reads/SRP012000/SRS635573/SRX593392/SRR1385863/SRR1385863.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKFN-09A-01D_TARGET-20-PASKFN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASKFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKFN-14A-01D	DNA	EFO	SRS637405	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKFN-14A-01D A42818 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42818	SRX597812	"Specific Capture analysis of normal sample TARGET-20-PASKFN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASKFN-14A-01D A42818 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42818_1_lane_dupsFlagged.bam	SRR1395080	@dbgap@:reads/SRP012000/SRS637405/SRX597812/SRR1395080/SRR1395080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASKFN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASKFN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASKFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKFN-14A-01D	DNA	EFO	SRS637405	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKFN-14A-01D A42818 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42818	SRX597812	"Specific Capture analysis of normal sample TARGET-20-PASKFN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASKFN-14A-01D A42818 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42818_1_lane_dupsFlagged.bam	SRR1395080	@dbgap@:reads/SRP012000/SRS637405/SRX597812/SRR1395080/SRR1395080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKFN-09A-01D_TARGET-20-PASKFN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASKFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKFN-14A-01D	DNA	EFO	SRS637405	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKFN-14A-01D A42818 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42818	SRX597812	"Specific Capture analysis of normal sample TARGET-20-PASKFN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASKFN-14A-01D A42818 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42818_1_lane_dupsFlagged.bam	SRR1395080	@dbgap@:reads/SRP012000/SRS637405/SRX597812/SRR1395080/SRR1395080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKFN-09A-01D_TARGET-20-PASKFN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASKGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGD-09A-01D	DNA	EFO	SRS628928	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGD-09A-01D A32271 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32271	SRX574984	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKGD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASKGD-09A-01D A32271 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32271_1_lane_dupsFlagged.bam	SRR1346200	@dbgap@:reads/SRP012000/SRS628928/SRX574984/SRR1346200/SRR1346200.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASKGD-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASKGD-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASKGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGD-09A-01D	DNA	EFO	SRS628928	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGD-09A-01D A32271 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32271	SRX574984	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKGD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASKGD-09A-01D A32271 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32271_1_lane_dupsFlagged.bam	SRR1346200	@dbgap@:reads/SRP012000/SRS628928/SRX574984/SRR1346200/SRR1346200.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKGD-09A-01D_TARGET-20-PASKGD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASKGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGD-09A-01D	DNA	EFO	SRS628928	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGD-09A-01D A32271 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32271	SRX574984	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKGD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASKGD-09A-01D A32271 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32271_1_lane_dupsFlagged.bam	SRR1346200	@dbgap@:reads/SRP012000/SRS628928/SRX574984/SRR1346200/SRR1346200.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKGD-09A-01D_TARGET-20-PASKGD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASKGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKGD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGD-14A-01D	DNA	EFO	SRS635682	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGD-14A-01D A41639 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41639	SRX593506	"Specific Capture analysis of normal sample TARGET-20-PASKGD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASKGD-14A-01D A41639 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41639_1_lane_dupsFlagged.bam	SRR1385951	@dbgap@:reads/SRP012000/SRS635682/SRX593506/SRR1385951/SRR1385951.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASKGD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASKGD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASKGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKGD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGD-14A-01D	DNA	EFO	SRS635682	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGD-14A-01D A41639 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41639	SRX593506	"Specific Capture analysis of normal sample TARGET-20-PASKGD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASKGD-14A-01D A41639 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41639_1_lane_dupsFlagged.bam	SRR1385951	@dbgap@:reads/SRP012000/SRS635682/SRX593506/SRR1385951/SRR1385951.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKGD-09A-01D_TARGET-20-PASKGD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASKGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKGD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGD-14A-01D	DNA	EFO	SRS635682	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGD-14A-01D A41639 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41639	SRX593506	"Specific Capture analysis of normal sample TARGET-20-PASKGD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASKGD-14A-01D A41639 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41639_1_lane_dupsFlagged.bam	SRR1385951	@dbgap@:reads/SRP012000/SRS635682/SRX593506/SRR1385951/SRR1385951.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKGD-09A-01D_TARGET-20-PASKGD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASKGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKGH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGH-04A-01D	DNA	EFO	SRS637327	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGH-04A-01D A42218 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42218	SRX597706	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKGH-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASKGH-04A-01D A42218 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42218_1_lane_dupsFlagged.bam	SRR1395002	@dbgap@:reads/SRP012000/SRS637327/SRX597706/SRR1395002/SRR1395002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASKGH-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASKGH-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASKGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKGH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGH-04A-01D	DNA	EFO	SRS637327	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGH-04A-01D A42218 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42218	SRX597706	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKGH-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASKGH-04A-01D A42218 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42218_1_lane_dupsFlagged.bam	SRR1395002	@dbgap@:reads/SRP012000/SRS637327/SRX597706/SRR1395002/SRR1395002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKGH-04A-01D_TARGET-20-PASKGH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASKGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKGH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGH-04A-01D	DNA	EFO	SRS637327	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGH-04A-01D A42218 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42218	SRX597706	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKGH-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASKGH-04A-01D A42218 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42218_1_lane_dupsFlagged.bam	SRR1395002	@dbgap@:reads/SRP012000/SRS637327/SRX597706/SRR1395002/SRR1395002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKGH-04A-01D_TARGET-20-PASKGH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASKGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKGH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGH-09A-01D	DNA	EFO	SRS628286	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGH-09A-01D A31219 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31219	SRX573342	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKGH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PASKGH-09A-01D A31219 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31219_1_lane_dupsFlagged.bam	SRR1342606	@dbgap@:reads/SRP012000/SRS628286/SRX573342/SRR1342606/SRR1342606.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASKGH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASKGH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASKGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKGH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGH-09A-01D	DNA	EFO	SRS628286	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGH-09A-01D A31219 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31219	SRX573342	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKGH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PASKGH-09A-01D A31219 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31219_1_lane_dupsFlagged.bam	SRR1342606	@dbgap@:reads/SRP012000/SRS628286/SRX573342/SRR1342606/SRR1342606.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKGH-09A-01D_TARGET-20-PASKGH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASKGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKGH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGH-09A-01D	DNA	EFO	SRS628286	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGH-09A-01D A31219 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31219	SRX573342	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKGH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PASKGH-09A-01D A31219 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31219_1_lane_dupsFlagged.bam	SRR1342606	@dbgap@:reads/SRP012000/SRS628286/SRX573342/SRR1342606/SRR1342606.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKGH-09A-01D_TARGET-20-PASKGH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASKGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKGH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGH-14A-01D	DNA	EFO	SRS635652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGH-14A-01D A41637 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41637	SRX593476	"Specific Capture analysis of normal sample TARGET-20-PASKGH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASKGH-14A-01D A41637 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41637_1_lane_dupsFlagged.bam	SRR1385965	@dbgap@:reads/SRP012000/SRS635652/SRX593476/SRR1385965/SRR1385965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASKGH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASKGH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASKGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKGH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGH-14A-01D	DNA	EFO	SRS635652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGH-14A-01D A41637 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41637	SRX593476	"Specific Capture analysis of normal sample TARGET-20-PASKGH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASKGH-14A-01D A41637 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41637_1_lane_dupsFlagged.bam	SRR1385965	@dbgap@:reads/SRP012000/SRS635652/SRX593476/SRR1385965/SRR1385965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKGH-04A-01D_TARGET-20-PASKGH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASKGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKGH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGH-14A-01D	DNA	EFO	SRS635652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGH-14A-01D A41637 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41637	SRX593476	"Specific Capture analysis of normal sample TARGET-20-PASKGH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASKGH-14A-01D A41637 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41637_1_lane_dupsFlagged.bam	SRR1385965	@dbgap@:reads/SRP012000/SRS635652/SRX593476/SRR1385965/SRR1385965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKGH-04A-01D_TARGET-20-PASKGH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASKGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKGH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGH-14A-01D	DNA	EFO	SRS635652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGH-14A-01D A41637 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41637	SRX593476	"Specific Capture analysis of normal sample TARGET-20-PASKGH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASKGH-14A-01D A41637 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41637_1_lane_dupsFlagged.bam	SRR1385965	@dbgap@:reads/SRP012000/SRS635652/SRX593476/SRR1385965/SRR1385965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKGH-09A-01D_TARGET-20-PASKGH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASKGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKGH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGH-14A-01D	DNA	EFO	SRS635652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGH-14A-01D A41637 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41637	SRX593476	"Specific Capture analysis of normal sample TARGET-20-PASKGH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASKGH-14A-01D A41637 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41637_1_lane_dupsFlagged.bam	SRR1385965	@dbgap@:reads/SRP012000/SRS635652/SRX593476/SRR1385965/SRR1385965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKGH-09A-01D_TARGET-20-PASKGH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASKMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKMZ-09A-01D	DNA	EFO	SRS635443	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKMZ-09A-01D A41721 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41721	SRX593165	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKMZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASKMZ-09A-01D A41721 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41721_1_lane_dupsFlagged.bam	SRR1385631	@dbgap@:reads/SRP012000/SRS635443/SRX593165/SRR1385631/SRR1385631.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASKMZ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASKMZ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASKNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKNV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKNV-09A-01D	DNA	EFO	SRS633618	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKNV-09A-01D A33443 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33443	SRX587912	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKNV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASKNV-09A-01D A33443 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33443_1_lane_dupsFlagged.bam	SRR1373830	@dbgap@:reads/SRP012000/SRS633618/SRX587912/SRR1373830/SRR1373830.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASKNV-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASKNV-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASKNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKNV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKNV-09A-01D	DNA	EFO	SRS633618	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKNV-09A-01D A33443 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33443	SRX587912	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKNV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASKNV-09A-01D A33443 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33443_1_lane_dupsFlagged.bam	SRR1373830	@dbgap@:reads/SRP012000/SRS633618/SRX587912/SRR1373830/SRR1373830.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKNV-09A-01D_TARGET-20-PASKNV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASKNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKNV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKNV-09A-01D	DNA	EFO	SRS633618	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKNV-09A-01D A33443 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33443	SRX587912	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKNV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASKNV-09A-01D A33443 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33443_1_lane_dupsFlagged.bam	SRR1373830	@dbgap@:reads/SRP012000/SRS633618/SRX587912/SRR1373830/SRR1373830.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKNV-09A-01D_TARGET-20-PASKNV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASKNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKNV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKNV-14A-01D	DNA	EFO	SRS635641	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKNV-14A-01D A41638 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41638	SRX593466	"Specific Capture analysis of normal sample TARGET-20-PASKNV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASKNV-14A-01D A41638 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41638_1_lane_dupsFlagged.bam	SRR1385974	@dbgap@:reads/SRP012000/SRS635641/SRX593466/SRR1385974/SRR1385974.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASKNV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASKNV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASKNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKNV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKNV-14A-01D	DNA	EFO	SRS635641	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKNV-14A-01D A41638 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41638	SRX593466	"Specific Capture analysis of normal sample TARGET-20-PASKNV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASKNV-14A-01D A41638 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41638_1_lane_dupsFlagged.bam	SRR1385974	@dbgap@:reads/SRP012000/SRS635641/SRX593466/SRR1385974/SRR1385974.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKNV-09A-01D_TARGET-20-PASKNV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASKNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKNV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKNV-14A-01D	DNA	EFO	SRS635641	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKNV-14A-01D A41638 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41638	SRX593466	"Specific Capture analysis of normal sample TARGET-20-PASKNV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASKNV-14A-01D A41638 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41638_1_lane_dupsFlagged.bam	SRR1385974	@dbgap@:reads/SRP012000/SRS635641/SRX593466/SRR1385974/SRR1385974.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKNV-09A-01D_TARGET-20-PASKNV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASKPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKPI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKPI-09A-01D	DNA	EFO	SRS635565	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKPI-09A-01D A41820 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41820	SRX593381	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKPI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASKPI-09A-01D A41820 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41820_1_lane_dupsFlagged.bam	SRR1385822	@dbgap@:reads/SRP012000/SRS635565/SRX593381/SRR1385822/SRR1385822.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASKPI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASKPI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASKPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKPI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKPI-09A-01D	DNA	EFO	SRS635565	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKPI-09A-01D A41820 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41820	SRX593381	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKPI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASKPI-09A-01D A41820 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41820_1_lane_dupsFlagged.bam	SRR1385822	@dbgap@:reads/SRP012000/SRS635565/SRX593381/SRR1385822/SRR1385822.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKPI-09A-01D_TARGET-20-PASKPI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASKPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKPI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKPI-09A-01D	DNA	EFO	SRS635565	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKPI-09A-01D A41820 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41820	SRX593381	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKPI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASKPI-09A-01D A41820 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41820_1_lane_dupsFlagged.bam	SRR1385822	@dbgap@:reads/SRP012000/SRS635565/SRX593381/SRR1385822/SRR1385822.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKPI-09A-01D_TARGET-20-PASKPI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASKPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKPI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKPI-14A-01D	DNA	EFO	SRS635955	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKPI-14A-01D A42501 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42501	SRX593917	"Specific Capture analysis of normal sample TARGET-20-PASKPI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASKPI-14A-01D A42501 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42501_1_lane_dupsFlagged.bam	SRR1386342	@dbgap@:reads/SRP012000/SRS635955/SRX593917/SRR1386342/SRR1386342.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASKPI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASKPI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASKPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKPI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKPI-14A-01D	DNA	EFO	SRS635955	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKPI-14A-01D A42501 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42501	SRX593917	"Specific Capture analysis of normal sample TARGET-20-PASKPI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASKPI-14A-01D A42501 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42501_1_lane_dupsFlagged.bam	SRR1386342	@dbgap@:reads/SRP012000/SRS635955/SRX593917/SRR1386342/SRR1386342.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKPI-09A-01D_TARGET-20-PASKPI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASKPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKPI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKPI-14A-01D	DNA	EFO	SRS635955	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKPI-14A-01D A42501 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42501	SRX593917	"Specific Capture analysis of normal sample TARGET-20-PASKPI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASKPI-14A-01D A42501 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42501_1_lane_dupsFlagged.bam	SRR1386342	@dbgap@:reads/SRP012000/SRS635955/SRX593917/SRR1386342/SRR1386342.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKPI-09A-01D_TARGET-20-PASKPI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASKRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKRJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKRJ-03A-01D	DNA	EFO	SRS633629	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKRJ-03A-01D A33426 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33426	SRX587923	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKRJ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASKRJ-03A-01D A33426 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33426_1_lane_dupsFlagged.bam	SRR1373816	@dbgap@:reads/SRP012000/SRS633629/SRX587923/SRR1373816/SRR1373816.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASKRJ-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASKRJ-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASKRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKRJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKRJ-03A-01D	DNA	EFO	SRS633629	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKRJ-03A-01D A33426 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33426	SRX587923	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKRJ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASKRJ-03A-01D A33426 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33426_1_lane_dupsFlagged.bam	SRR1373816	@dbgap@:reads/SRP012000/SRS633629/SRX587923/SRR1373816/SRR1373816.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKRJ-03A-01D_TARGET-20-PASKRJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASKRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKRJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKRJ-03A-01D	DNA	EFO	SRS633629	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKRJ-03A-01D A33426 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33426	SRX587923	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKRJ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASKRJ-03A-01D A33426 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33426_1_lane_dupsFlagged.bam	SRR1373816	@dbgap@:reads/SRP012000/SRS633629/SRX587923/SRR1373816/SRR1373816.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKRJ-03A-01D_TARGET-20-PASKRJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASKRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKRJ-14A-01D	DNA	EFO	SRS637427	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKRJ-14A-01D A42819 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42819	SRX597836	"Specific Capture analysis of normal sample TARGET-20-PASKRJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASKRJ-14A-01D A42819 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42819_1_lane_dupsFlagged.bam	SRR1395055	@dbgap@:reads/SRP012000/SRS637427/SRX597836/SRR1395055/SRR1395055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASKRJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASKRJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASKRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKRJ-14A-01D	DNA	EFO	SRS637427	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKRJ-14A-01D A42819 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42819	SRX597836	"Specific Capture analysis of normal sample TARGET-20-PASKRJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASKRJ-14A-01D A42819 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42819_1_lane_dupsFlagged.bam	SRR1395055	@dbgap@:reads/SRP012000/SRS637427/SRX597836/SRR1395055/SRR1395055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKRJ-03A-01D_TARGET-20-PASKRJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASKRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKRJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKRJ-14A-01D	DNA	EFO	SRS637427	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKRJ-14A-01D A42819 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42819	SRX597836	"Specific Capture analysis of normal sample TARGET-20-PASKRJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASKRJ-14A-01D A42819 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42819_1_lane_dupsFlagged.bam	SRR1395055	@dbgap@:reads/SRP012000/SRS637427/SRX597836/SRR1395055/SRR1395055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKRJ-03A-01D_TARGET-20-PASKRJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASKRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKRM-09A-01D	DNA	EFO	SRS633649	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKRM-09A-01D A33425 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33425	SRX587943	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKRM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASKRM-09A-01D A33425 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33425_1_lane_dupsFlagged.bam	SRR1373847	@dbgap@:reads/SRP012000/SRS633649/SRX587943/SRR1373847/SRR1373847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASKRM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASKRM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASKRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKRM-09A-01D	DNA	EFO	SRS633649	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKRM-09A-01D A33425 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33425	SRX587943	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKRM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASKRM-09A-01D A33425 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33425_1_lane_dupsFlagged.bam	SRR1373847	@dbgap@:reads/SRP012000/SRS633649/SRX587943/SRR1373847/SRR1373847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKRM-09A-01D_TARGET-20-PASKRM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASKRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKRM-09A-01D	DNA	EFO	SRS633649	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKRM-09A-01D A33425 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33425	SRX587943	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKRM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASKRM-09A-01D A33425 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33425_1_lane_dupsFlagged.bam	SRR1373847	@dbgap@:reads/SRP012000/SRS633649/SRX587943/SRR1373847/SRR1373847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKRM-09A-01D_TARGET-20-PASKRM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASKRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKRM-14A-01D	DNA	EFO	SRS637364	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKRM-14A-01D A42820 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42820	SRX597768	"Specific Capture analysis of normal sample TARGET-20-PASKRM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASKRM-14A-01D A42820 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42820_1_lane_dupsFlagged.bam	SRR1395046	@dbgap@:reads/SRP012000/SRS637364/SRX597768/SRR1395046/SRR1395046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASKRM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASKRM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASKRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKRM-14A-01D	DNA	EFO	SRS637364	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKRM-14A-01D A42820 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42820	SRX597768	"Specific Capture analysis of normal sample TARGET-20-PASKRM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASKRM-14A-01D A42820 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42820_1_lane_dupsFlagged.bam	SRR1395046	@dbgap@:reads/SRP012000/SRS637364/SRX597768/SRR1395046/SRR1395046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKRM-09A-01D_TARGET-20-PASKRM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASKRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASKRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKRM-14A-01D	DNA	EFO	SRS637364	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKRM-14A-01D A42820 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42820	SRX597768	"Specific Capture analysis of normal sample TARGET-20-PASKRM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASKRM-14A-01D A42820 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42820_1_lane_dupsFlagged.bam	SRR1395046	@dbgap@:reads/SRP012000/SRS637364/SRX597768/SRR1395046/SRR1395046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASKRM-09A-01D_TARGET-20-PASKRM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASKUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKUA-09A-01D	DNA	EFO	SRS628321	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKUA-09A-01D A31262 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31262	SRX573396	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASKUA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASKUA-09A-01D A31262 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31262_1_lane_dupsFlagged.bam	SRR1342687	@dbgap@:reads/SRP012000/SRS628321/SRX573396/SRR1342687/SRR1342687.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASKUA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASKUA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLDL-09A-02D	DNA	EFO	SRS628930	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLDL-09A-02D A32332 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32332	SRX574986	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLDL-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLDL-09A-02D A32332 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32332_1_lane_dupsFlagged.bam	SRR1346164	@dbgap@:reads/SRP012000/SRS628930/SRX574986/SRR1346164/SRR1346164.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLDL-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLDL-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLDL-09A-02D	DNA	EFO	SRS628930	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLDL-09A-02D A32332 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32332	SRX574986	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLDL-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLDL-09A-02D A32332 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32332_1_lane_dupsFlagged.bam	SRR1346164	@dbgap@:reads/SRP012000/SRS628930/SRX574986/SRR1346164/SRR1346164.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLDL-09A-02D_TARGET-20-PASLDL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLDL-09A-02D	DNA	EFO	SRS628930	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLDL-09A-02D A32332 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32332	SRX574986	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLDL-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLDL-09A-02D A32332 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32332_1_lane_dupsFlagged.bam	SRR1346164	@dbgap@:reads/SRP012000/SRS628930/SRX574986/SRR1346164/SRR1346164.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLDL-09A-02D_TARGET-20-PASLDL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLDL-14A-01D	DNA	EFO	SRS635953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLDL-14A-01D A42503 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42503	SRX593913	"Specific Capture analysis of normal sample TARGET-20-PASLDL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASLDL-14A-01D A42503 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42503_1_lane_dupsFlagged.bam	SRR1386349	@dbgap@:reads/SRP012000/SRS635953/SRX593913/SRR1386349/SRR1386349.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLDL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLDL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLDL-14A-01D	DNA	EFO	SRS635953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLDL-14A-01D A42503 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42503	SRX593913	"Specific Capture analysis of normal sample TARGET-20-PASLDL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASLDL-14A-01D A42503 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42503_1_lane_dupsFlagged.bam	SRR1386349	@dbgap@:reads/SRP012000/SRS635953/SRX593913/SRR1386349/SRR1386349.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLDL-09A-02D_TARGET-20-PASLDL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLDL-14A-01D	DNA	EFO	SRS635953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLDL-14A-01D A42503 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42503	SRX593913	"Specific Capture analysis of normal sample TARGET-20-PASLDL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASLDL-14A-01D A42503 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42503_1_lane_dupsFlagged.bam	SRR1386349	@dbgap@:reads/SRP012000/SRS635953/SRX593913/SRR1386349/SRR1386349.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLDL-09A-02D_TARGET-20-PASLDL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLGD-09A-01D	DNA	EFO	SRS628920	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLGD-09A-01D A32272 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32272	SRX574976	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLGD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLGD-09A-01D A32272 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32272_1_lane_dupsFlagged.bam	SRR1346166	@dbgap@:reads/SRP012000/SRS628920/SRX574976/SRR1346166/SRR1346166.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLGD-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLGD-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASLGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLGD-09A-01D	DNA	EFO	SRS628920	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLGD-09A-01D A32272 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32272	SRX574976	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLGD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLGD-09A-01D A32272 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32272_1_lane_dupsFlagged.bam	SRR1346166	@dbgap@:reads/SRP012000/SRS628920/SRX574976/SRR1346166/SRR1346166.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLGD-09A-01D_TARGET-20-PASLGD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLGD-09A-01D	DNA	EFO	SRS628920	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLGD-09A-01D A32272 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32272	SRX574976	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLGD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLGD-09A-01D A32272 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32272_1_lane_dupsFlagged.bam	SRR1346166	@dbgap@:reads/SRP012000/SRS628920/SRX574976/SRR1346166/SRR1346166.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLGD-09A-01D_TARGET-20-PASLGD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLGD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLGD-14A-01D	DNA	EFO	SRS637445	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLGD-14A-01D A42867 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42867	SRX597862	"Specific Capture analysis of normal sample TARGET-20-PASLGD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASLGD-14A-01D A42867 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42867_1_lane_dupsFlagged.bam	SRR1395162	@dbgap@:reads/SRP012000/SRS637445/SRX597862/SRR1395162/SRR1395162.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLGD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLGD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASLGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLGD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLGD-14A-01D	DNA	EFO	SRS637445	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLGD-14A-01D A42867 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42867	SRX597862	"Specific Capture analysis of normal sample TARGET-20-PASLGD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASLGD-14A-01D A42867 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42867_1_lane_dupsFlagged.bam	SRR1395162	@dbgap@:reads/SRP012000/SRS637445/SRX597862/SRR1395162/SRR1395162.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLGD-09A-01D_TARGET-20-PASLGD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLGD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLGD-14A-01D	DNA	EFO	SRS637445	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLGD-14A-01D A42867 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42867	SRX597862	"Specific Capture analysis of normal sample TARGET-20-PASLGD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASLGD-14A-01D A42867 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42867_1_lane_dupsFlagged.bam	SRR1395162	@dbgap@:reads/SRP012000/SRS637445/SRX597862/SRR1395162/SRR1395162.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLGD-09A-01D_TARGET-20-PASLGD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLHH-09A-01D	DNA	EFO	SRS633656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLHH-09A-01D A33427 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33427	SRX587949	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLHH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLHH-09A-01D A33427 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33427_1_lane_dupsFlagged.bam	SRR1373802	@dbgap@:reads/SRP012000/SRS633656/SRX587949/SRR1373802/SRR1373802.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLHH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLHH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASLHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLHH-09A-01D	DNA	EFO	SRS633656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLHH-09A-01D A33427 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33427	SRX587949	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLHH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLHH-09A-01D A33427 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33427_1_lane_dupsFlagged.bam	SRR1373802	@dbgap@:reads/SRP012000/SRS633656/SRX587949/SRR1373802/SRR1373802.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLHH-09A-01D_TARGET-20-PASLHH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLHH-09A-01D	DNA	EFO	SRS633656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLHH-09A-01D A33427 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33427	SRX587949	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLHH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLHH-09A-01D A33427 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33427_1_lane_dupsFlagged.bam	SRR1373802	@dbgap@:reads/SRP012000/SRS633656/SRX587949/SRR1373802/SRR1373802.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLHH-09A-01D_TARGET-20-PASLHH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLHH-14A-01D	DNA	EFO	SRS635710	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLHH-14A-01D A41640 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41640	SRX593536	"Specific Capture analysis of normal sample TARGET-20-PASLHH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASLHH-14A-01D A41640 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41640_1_lane_dupsFlagged.bam	SRR1385934	@dbgap@:reads/SRP012000/SRS635710/SRX593536/SRR1385934/SRR1385934.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLHH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLHH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASLHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLHH-14A-01D	DNA	EFO	SRS635710	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLHH-14A-01D A41640 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41640	SRX593536	"Specific Capture analysis of normal sample TARGET-20-PASLHH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASLHH-14A-01D A41640 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41640_1_lane_dupsFlagged.bam	SRR1385934	@dbgap@:reads/SRP012000/SRS635710/SRX593536/SRR1385934/SRR1385934.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLHH-09A-01D_TARGET-20-PASLHH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLHH-14A-01D	DNA	EFO	SRS635710	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLHH-14A-01D A41640 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41640	SRX593536	"Specific Capture analysis of normal sample TARGET-20-PASLHH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASLHH-14A-01D A41640 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41640_1_lane_dupsFlagged.bam	SRR1385934	@dbgap@:reads/SRP012000/SRS635710/SRX593536/SRR1385934/SRR1385934.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLHH-09A-01D_TARGET-20-PASLHH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLPE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLPE-09A-01D	DNA	EFO	SRS635498	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLPE-09A-01D A41738 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41738	SRX593221	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLPE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASLPE-09A-01D A41738 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41738_1_lane_dupsFlagged.bam	SRR1385641	@dbgap@:reads/SRP012000/SRS635498/SRX593221/SRR1385641/SRR1385641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLPE-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLPE-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASLPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLPE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLPE-09A-01D	DNA	EFO	SRS635498	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLPE-09A-01D A41738 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41738	SRX593221	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLPE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASLPE-09A-01D A41738 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41738_1_lane_dupsFlagged.bam	SRR1385641	@dbgap@:reads/SRP012000/SRS635498/SRX593221/SRR1385641/SRR1385641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLPE-09A-01D_TARGET-20-PASLPE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLPE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLPE-09A-01D	DNA	EFO	SRS635498	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLPE-09A-01D A41738 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41738	SRX593221	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLPE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASLPE-09A-01D A41738 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41738_1_lane_dupsFlagged.bam	SRR1385641	@dbgap@:reads/SRP012000/SRS635498/SRX593221/SRR1385641/SRR1385641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLPE-09A-01D_TARGET-20-PASLPE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLPE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLPE-14A-01D	DNA	EFO	SRS635707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLPE-14A-01D A41643 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41643	SRX593531	"Specific Capture analysis of normal sample TARGET-20-PASLPE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASLPE-14A-01D A41643 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41643_1_lane_dupsFlagged.bam	SRR1385939	@dbgap@:reads/SRP012000/SRS635707/SRX593531/SRR1385939/SRR1385939.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLPE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLPE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASLPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLPE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLPE-14A-01D	DNA	EFO	SRS635707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLPE-14A-01D A41643 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41643	SRX593531	"Specific Capture analysis of normal sample TARGET-20-PASLPE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASLPE-14A-01D A41643 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41643_1_lane_dupsFlagged.bam	SRR1385939	@dbgap@:reads/SRP012000/SRS635707/SRX593531/SRR1385939/SRR1385939.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLPE-09A-01D_TARGET-20-PASLPE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLPE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLPE-14A-01D	DNA	EFO	SRS635707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLPE-14A-01D A41643 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41643	SRX593531	"Specific Capture analysis of normal sample TARGET-20-PASLPE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASLPE-14A-01D A41643 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41643_1_lane_dupsFlagged.bam	SRR1385939	@dbgap@:reads/SRP012000/SRS635707/SRX593531/SRR1385939/SRR1385939.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLPE-09A-01D_TARGET-20-PASLPE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLPU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLPU-09A-01D	DNA	EFO	SRS628978	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLPU-09A-01D A32333 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32333	SRX575034	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLPU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLPU-09A-01D A32333 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32333_1_lane_dupsFlagged.bam	SRR1346135	@dbgap@:reads/SRP012000/SRS628978/SRX575034/SRR1346135/SRR1346135.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLPU-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLPU-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASLPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLPU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLPU-09A-01D	DNA	EFO	SRS628978	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLPU-09A-01D A32333 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32333	SRX575034	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLPU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLPU-09A-01D A32333 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32333_1_lane_dupsFlagged.bam	SRR1346135	@dbgap@:reads/SRP012000/SRS628978/SRX575034/SRR1346135/SRR1346135.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLPU-09A-01D_TARGET-20-PASLPU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLPU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLPU-09A-01D	DNA	EFO	SRS628978	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLPU-09A-01D A32333 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32333	SRX575034	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLPU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLPU-09A-01D A32333 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32333_1_lane_dupsFlagged.bam	SRR1346135	@dbgap@:reads/SRP012000/SRS628978/SRX575034/SRR1346135/SRR1346135.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLPU-09A-01D_TARGET-20-PASLPU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLPU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLPU-14A-01D	DNA	EFO	SRS635660	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLPU-14A-01D A41641 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41641	SRX593485	"Specific Capture analysis of normal sample TARGET-20-PASLPU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASLPU-14A-01D A41641 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41641_1_lane_dupsFlagged.bam	SRR1385997	@dbgap@:reads/SRP012000/SRS635660/SRX593485/SRR1385997/SRR1385997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLPU-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLPU-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASLPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLPU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLPU-14A-01D	DNA	EFO	SRS635660	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLPU-14A-01D A41641 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41641	SRX593485	"Specific Capture analysis of normal sample TARGET-20-PASLPU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASLPU-14A-01D A41641 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41641_1_lane_dupsFlagged.bam	SRR1385997	@dbgap@:reads/SRP012000/SRS635660/SRX593485/SRR1385997/SRR1385997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLPU-09A-01D_TARGET-20-PASLPU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLPU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLPU-14A-01D	DNA	EFO	SRS635660	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLPU-14A-01D A41641 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41641	SRX593485	"Specific Capture analysis of normal sample TARGET-20-PASLPU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASLPU-14A-01D A41641 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41641_1_lane_dupsFlagged.bam	SRR1385997	@dbgap@:reads/SRP012000/SRS635660/SRX593485/SRR1385997/SRR1385997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLPU-09A-01D_TARGET-20-PASLPU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-02D	DNA	EFO	SRS628890	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSD-03A-02D A32273 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32273	SRX574946	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLSD-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLSD-03A-02D A32273 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32273_1_lane_dupsFlagged.bam	SRR1346134	@dbgap@:reads/SRP012000/SRS628890/SRX574946/SRR1346134/SRR1346134.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLSD-03A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLSD-03A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-02D	DNA	EFO	SRS628890	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSD-03A-02D A32273 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32273	SRX574946	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLSD-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLSD-03A-02D A32273 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32273_1_lane_dupsFlagged.bam	SRR1346134	@dbgap@:reads/SRP012000/SRS628890/SRX574946/SRR1346134/SRR1346134.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLSD-03A-02D_TARGET-20-PASLSD-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-02D	DNA	EFO	SRS628890	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSD-03A-02D A32273 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32273	SRX574946	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLSD-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLSD-03A-02D A32273 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32273_1_lane_dupsFlagged.bam	SRR1346134	@dbgap@:reads/SRP012000/SRS628890/SRX574946/SRR1346134/SRR1346134.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLSD-03A-02D_TARGET-20-PASLSD-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-04A-03D	DNA	EFO	SRS637547	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSD-04A-03D A42720 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42720	SRX597985	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLSD-04A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASLSD-04A-03D A42720 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42720_1_lane_dupsFlagged.bam	SRR1395250	@dbgap@:reads/SRP012000/SRS637547/SRX597985/SRR1395250/SRR1395250.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLSD-04A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLSD-04A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-04A-03D	DNA	EFO	SRS637547	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSD-04A-03D A42720 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42720	SRX597985	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLSD-04A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASLSD-04A-03D A42720 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42720_1_lane_dupsFlagged.bam	SRR1395250	@dbgap@:reads/SRP012000/SRS637547/SRX597985/SRR1395250/SRR1395250.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLSD-04A-03D_TARGET-20-PASLSD-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-04A-03D	DNA	EFO	SRS637547	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSD-04A-03D A42720 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42720	SRX597985	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLSD-04A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASLSD-04A-03D A42720 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42720_1_lane_dupsFlagged.bam	SRR1395250	@dbgap@:reads/SRP012000/SRS637547/SRX597985/SRR1395250/SRR1395250.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLSD-04A-03D_TARGET-20-PASLSD-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-02D	DNA	EFO	SRS635876	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSD-14A-02D A42502 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42502	SRX593836	"Specific Capture analysis of normal sample TARGET-20-PASLSD-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASLSD-14A-02D A42502 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42502_1_lane_dupsFlagged.bam	SRR1386409	@dbgap@:reads/SRP012000/SRS635876/SRX593836/SRR1386409/SRR1386409.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLSD-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLSD-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-02D	DNA	EFO	SRS635876	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSD-14A-02D A42502 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42502	SRX593836	"Specific Capture analysis of normal sample TARGET-20-PASLSD-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASLSD-14A-02D A42502 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42502_1_lane_dupsFlagged.bam	SRR1386409	@dbgap@:reads/SRP012000/SRS635876/SRX593836/SRR1386409/SRR1386409.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLSD-03A-02D_TARGET-20-PASLSD-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-02D	DNA	EFO	SRS635876	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSD-14A-02D A42502 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42502	SRX593836	"Specific Capture analysis of normal sample TARGET-20-PASLSD-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASLSD-14A-02D A42502 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42502_1_lane_dupsFlagged.bam	SRR1386409	@dbgap@:reads/SRP012000/SRS635876/SRX593836/SRR1386409/SRR1386409.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLSD-03A-02D_TARGET-20-PASLSD-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-02D	DNA	EFO	SRS635876	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSD-14A-02D A42502 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42502	SRX593836	"Specific Capture analysis of normal sample TARGET-20-PASLSD-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASLSD-14A-02D A42502 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42502_1_lane_dupsFlagged.bam	SRR1386409	@dbgap@:reads/SRP012000/SRS635876/SRX593836/SRR1386409/SRR1386409.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLSD-04A-03D_TARGET-20-PASLSD-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-14A-02D	DNA	EFO	SRS635876	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSD-14A-02D A42502 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42502	SRX593836	"Specific Capture analysis of normal sample TARGET-20-PASLSD-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASLSD-14A-02D A42502 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42502_1_lane_dupsFlagged.bam	SRR1386409	@dbgap@:reads/SRP012000/SRS635876/SRX593836/SRR1386409/SRR1386409.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLSD-04A-03D_TARGET-20-PASLSD-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLSE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSE-03A-01D	DNA	EFO	SRS635566	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSE-03A-01D A41802 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41802	SRX593382	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLSE-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASLSE-03A-01D A41802 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41802_1_lane_dupsFlagged.bam	SRR1385787	@dbgap@:reads/SRP012000/SRS635566/SRX593382/SRR1385787/SRR1385787.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLSE-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLSE-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASLSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLSE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSE-03A-01D	DNA	EFO	SRS635566	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSE-03A-01D A41802 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41802	SRX593382	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLSE-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASLSE-03A-01D A41802 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41802_1_lane_dupsFlagged.bam	SRR1385787	@dbgap@:reads/SRP012000/SRS635566/SRX593382/SRR1385787/SRR1385787.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLSE-03A-01D_TARGET-20-PASLSE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLSE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSE-03A-01D	DNA	EFO	SRS635566	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSE-03A-01D A41802 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41802	SRX593382	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLSE-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASLSE-03A-01D A41802 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41802_1_lane_dupsFlagged.bam	SRR1385787	@dbgap@:reads/SRP012000/SRS635566/SRX593382/SRR1385787/SRR1385787.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLSE-03A-01D_TARGET-20-PASLSE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLSE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSE-14A-01D	DNA	EFO	SRS637384	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSE-14A-01D A42821 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42821	SRX597791	"Specific Capture analysis of normal sample TARGET-20-PASLSE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASLSE-14A-01D A42821 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42821_1_lane_dupsFlagged.bam	SRR1395066	@dbgap@:reads/SRP012000/SRS637384/SRX597791/SRR1395066/SRR1395066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLSE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLSE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASLSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLSE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSE-14A-01D	DNA	EFO	SRS637384	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSE-14A-01D A42821 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42821	SRX597791	"Specific Capture analysis of normal sample TARGET-20-PASLSE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASLSE-14A-01D A42821 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42821_1_lane_dupsFlagged.bam	SRR1395066	@dbgap@:reads/SRP012000/SRS637384/SRX597791/SRR1395066/SRR1395066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLSE-03A-01D_TARGET-20-PASLSE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLSE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSE-14A-01D	DNA	EFO	SRS637384	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSE-14A-01D A42821 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42821	SRX597791	"Specific Capture analysis of normal sample TARGET-20-PASLSE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASLSE-14A-01D A42821 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42821_1_lane_dupsFlagged.bam	SRR1395066	@dbgap@:reads/SRP012000/SRS637384/SRX597791/SRR1395066/SRR1395066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLSE-03A-01D_TARGET-20-PASLSE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSI-09A-01D	DNA	EFO	SRS628958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSI-09A-01D A32274 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32274	SRX575014	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLSI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLSI-09A-01D A32274 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32274_1_lane_dupsFlagged.bam	SRR1346191	@dbgap@:reads/SRP012000/SRS628958/SRX575014/SRR1346191/SRR1346191.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLSI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLSI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASLSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSI-09A-01D	DNA	EFO	SRS628958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSI-09A-01D A32274 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32274	SRX575014	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLSI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLSI-09A-01D A32274 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32274_1_lane_dupsFlagged.bam	SRR1346191	@dbgap@:reads/SRP012000/SRS628958/SRX575014/SRR1346191/SRR1346191.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLSI-09A-01D_TARGET-20-PASLSI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSI-09A-01D	DNA	EFO	SRS628958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSI-09A-01D A32274 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32274	SRX575014	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLSI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLSI-09A-01D A32274 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32274_1_lane_dupsFlagged.bam	SRR1346191	@dbgap@:reads/SRP012000/SRS628958/SRX575014/SRR1346191/SRR1346191.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLSI-09A-01D_TARGET-20-PASLSI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSI-14A-01D	DNA	EFO	SRS635643	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSI-14A-01D A41644 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41644	SRX593465	"Specific Capture analysis of normal sample TARGET-20-PASLSI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASLSI-14A-01D A41644 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41644_1_lane_dupsFlagged.bam	SRR1385979	@dbgap@:reads/SRP012000/SRS635643/SRX593465/SRR1385979/SRR1385979.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLSI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLSI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASLSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSI-14A-01D	DNA	EFO	SRS635643	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSI-14A-01D A41644 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41644	SRX593465	"Specific Capture analysis of normal sample TARGET-20-PASLSI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASLSI-14A-01D A41644 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41644_1_lane_dupsFlagged.bam	SRR1385979	@dbgap@:reads/SRP012000/SRS635643/SRX593465/SRR1385979/SRR1385979.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLSI-09A-01D_TARGET-20-PASLSI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSI-14A-01D	DNA	EFO	SRS635643	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSI-14A-01D A41644 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41644	SRX593465	"Specific Capture analysis of normal sample TARGET-20-PASLSI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASLSI-14A-01D A41644 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41644_1_lane_dupsFlagged.bam	SRR1385979	@dbgap@:reads/SRP012000/SRS635643/SRX593465/SRR1385979/SRR1385979.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLSI-09A-01D_TARGET-20-PASLSI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLTF-09A-02D	DNA	EFO	SRS628940	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLTF-09A-02D A32334 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32334	SRX574996	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLTF-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLTF-09A-02D A32334 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32334_1_lane_dupsFlagged.bam	SRR1346147	@dbgap@:reads/SRP012000/SRS628940/SRX574996/SRR1346147/SRR1346147.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLTF-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLTF-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASLTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLTF-09A-02D	DNA	EFO	SRS628940	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLTF-09A-02D A32334 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32334	SRX574996	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLTF-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLTF-09A-02D A32334 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32334_1_lane_dupsFlagged.bam	SRR1346147	@dbgap@:reads/SRP012000/SRS628940/SRX574996/SRR1346147/SRR1346147.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLTF-09A-02D_TARGET-20-PASLTF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLTF-09A-02D	DNA	EFO	SRS628940	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLTF-09A-02D A32334 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32334	SRX574996	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLTF-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASLTF-09A-02D A32334 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32334_1_lane_dupsFlagged.bam	SRR1346147	@dbgap@:reads/SRP012000/SRS628940/SRX574996/SRR1346147/SRR1346147.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLTF-09A-02D_TARGET-20-PASLTF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLTF-14A-01D	DNA	EFO	SRS635689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLTF-14A-01D A41642 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41642	SRX593515	"Specific Capture analysis of normal sample TARGET-20-PASLTF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASLTF-14A-01D A41642 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41642_1_lane_dupsFlagged.bam	SRR1385953	@dbgap@:reads/SRP012000/SRS635689/SRX593515/SRR1385953/SRR1385953.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLTF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLTF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASLTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLTF-14A-01D	DNA	EFO	SRS635689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLTF-14A-01D A41642 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41642	SRX593515	"Specific Capture analysis of normal sample TARGET-20-PASLTF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASLTF-14A-01D A41642 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41642_1_lane_dupsFlagged.bam	SRR1385953	@dbgap@:reads/SRP012000/SRS635689/SRX593515/SRR1385953/SRR1385953.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLTF-09A-02D_TARGET-20-PASLTF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLTF-14A-01D	DNA	EFO	SRS635689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLTF-14A-01D A41642 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41642	SRX593515	"Specific Capture analysis of normal sample TARGET-20-PASLTF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASLTF-14A-01D A41642 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41642_1_lane_dupsFlagged.bam	SRR1385953	@dbgap@:reads/SRP012000/SRS635689/SRX593515/SRR1385953/SRR1385953.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLTF-09A-02D_TARGET-20-PASLTF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLTS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLTS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLTS-09A-01D	DNA	EFO	SRS635627	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLTS-09A-01D A41942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41942	SRX593447	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLTS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASLTS-09A-01D A41942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41942_1_lane_dupsFlagged.bam	SRR1385922	@dbgap@:reads/SRP012000/SRS635627/SRX593447/SRR1385922/SRR1385922.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLTS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLTS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASLTS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLTS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLTS-09A-01D	DNA	EFO	SRS635627	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLTS-09A-01D A41942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41942	SRX593447	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLTS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASLTS-09A-01D A41942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41942_1_lane_dupsFlagged.bam	SRR1385922	@dbgap@:reads/SRP012000/SRS635627/SRX593447/SRR1385922/SRR1385922.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLTS-09A-01D_TARGET-20-PASLTS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLTS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLTS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLTS-09A-01D	DNA	EFO	SRS635627	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLTS-09A-01D A41942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41942	SRX593447	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLTS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASLTS-09A-01D A41942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41942_1_lane_dupsFlagged.bam	SRR1385922	@dbgap@:reads/SRP012000/SRS635627/SRX593447/SRR1385922/SRR1385922.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLTS-09A-01D_TARGET-20-PASLTS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLTS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLTS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLTS-14A-01D	DNA	EFO	SRS635968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLTS-14A-01D A42605 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42605	SRX593928	"Specific Capture analysis of normal sample TARGET-20-PASLTS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASLTS-14A-01D A42605 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42605_1_lane_dupsFlagged.bam	SRR1386478	@dbgap@:reads/SRP012000/SRS635968/SRX593928/SRR1386478/SRR1386478.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLTS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLTS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASLTS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLTS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLTS-14A-01D	DNA	EFO	SRS635968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLTS-14A-01D A42605 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42605	SRX593928	"Specific Capture analysis of normal sample TARGET-20-PASLTS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASLTS-14A-01D A42605 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42605_1_lane_dupsFlagged.bam	SRR1386478	@dbgap@:reads/SRP012000/SRS635968/SRX593928/SRR1386478/SRR1386478.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLTS-09A-01D_TARGET-20-PASLTS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLTS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLTS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLTS-14A-01D	DNA	EFO	SRS635968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLTS-14A-01D A42605 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42605	SRX593928	"Specific Capture analysis of normal sample TARGET-20-PASLTS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASLTS-14A-01D A42605 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42605_1_lane_dupsFlagged.bam	SRR1386478	@dbgap@:reads/SRP012000/SRS635968/SRX593928/SRR1386478/SRR1386478.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLTS-09A-01D_TARGET-20-PASLTS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLYX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLYX-04A-01D	DNA	EFO	SRS637554	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLYX-04A-01D A42721 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42721	SRX597994	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLYX-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASLYX-04A-01D A42721 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42721_1_lane_dupsFlagged.bam	SRR1395248	@dbgap@:reads/SRP012000/SRS637554/SRX597994/SRR1395248/SRR1395248.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLYX-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLYX-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASLYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLYX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLYX-04A-01D	DNA	EFO	SRS637554	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLYX-04A-01D A42721 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42721	SRX597994	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLYX-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASLYX-04A-01D A42721 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42721_1_lane_dupsFlagged.bam	SRR1395248	@dbgap@:reads/SRP012000/SRS637554/SRX597994/SRR1395248/SRR1395248.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLYX-04A-01D_TARGET-20-PASLYX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLYX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLYX-04A-01D	DNA	EFO	SRS637554	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLYX-04A-01D A42721 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42721	SRX597994	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLYX-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASLYX-04A-01D A42721 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42721_1_lane_dupsFlagged.bam	SRR1395248	@dbgap@:reads/SRP012000/SRS637554/SRX597994/SRR1395248/SRR1395248.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLYX-04A-01D_TARGET-20-PASLYX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLYX-09A-01D	DNA	EFO	SRS628282	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLYX-09A-01D A31263 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31263	SRX573337	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLYX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASLYX-09A-01D A31263 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31263_1_lane_dupsFlagged.bam	SRR1342610	@dbgap@:reads/SRP012000/SRS628282/SRX573337/SRR1342610/SRR1342610.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLYX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLYX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASLYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLYX-09A-01D	DNA	EFO	SRS628282	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLYX-09A-01D A31263 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31263	SRX573337	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLYX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASLYX-09A-01D A31263 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31263_1_lane_dupsFlagged.bam	SRR1342610	@dbgap@:reads/SRP012000/SRS628282/SRX573337/SRR1342610/SRR1342610.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLYX-09A-01D_TARGET-20-PASLYX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLYX-09A-01D	DNA	EFO	SRS628282	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLYX-09A-01D A31263 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31263	SRX573337	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLYX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASLYX-09A-01D A31263 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31263_1_lane_dupsFlagged.bam	SRR1342610	@dbgap@:reads/SRP012000/SRS628282/SRX573337/SRR1342610/SRR1342610.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLYX-09A-01D_TARGET-20-PASLYX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLYX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLYX-14A-01D	DNA	EFO	SRS636023	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLYX-14A-01D A42604 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42604	SRX593998	"Specific Capture analysis of normal sample TARGET-20-PASLYX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASLYX-14A-01D A42604 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42604_1_lane_dupsFlagged.bam	SRR1386489	@dbgap@:reads/SRP012000/SRS636023/SRX593998/SRR1386489/SRR1386489.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLYX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLYX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASLYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLYX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLYX-14A-01D	DNA	EFO	SRS636023	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLYX-14A-01D A42604 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42604	SRX593998	"Specific Capture analysis of normal sample TARGET-20-PASLYX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASLYX-14A-01D A42604 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42604_1_lane_dupsFlagged.bam	SRR1386489	@dbgap@:reads/SRP012000/SRS636023/SRX593998/SRR1386489/SRR1386489.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLYX-04A-01D_TARGET-20-PASLYX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLYX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLYX-14A-01D	DNA	EFO	SRS636023	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLYX-14A-01D A42604 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42604	SRX593998	"Specific Capture analysis of normal sample TARGET-20-PASLYX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASLYX-14A-01D A42604 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42604_1_lane_dupsFlagged.bam	SRR1386489	@dbgap@:reads/SRP012000/SRS636023/SRX593998/SRR1386489/SRR1386489.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLYX-04A-01D_TARGET-20-PASLYX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLYX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLYX-14A-01D	DNA	EFO	SRS636023	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLYX-14A-01D A42604 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42604	SRX593998	"Specific Capture analysis of normal sample TARGET-20-PASLYX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASLYX-14A-01D A42604 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42604_1_lane_dupsFlagged.bam	SRR1386489	@dbgap@:reads/SRP012000/SRS636023/SRX593998/SRR1386489/SRR1386489.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLYX-09A-01D_TARGET-20-PASLYX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASLYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLYX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLYX-14A-01D	DNA	EFO	SRS636023	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLYX-14A-01D A42604 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42604	SRX593998	"Specific Capture analysis of normal sample TARGET-20-PASLYX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASLYX-14A-01D A42604 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42604_1_lane_dupsFlagged.bam	SRR1386489	@dbgap@:reads/SRP012000/SRS636023/SRX593998/SRR1386489/SRR1386489.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASLYX-09A-01D_TARGET-20-PASLYX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASLZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLZE-09A-03D	DNA	EFO	SRS628306	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLZE-09A-03D A31209 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31209	SRX573371	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASLZE-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASLZE-09A-03D A31209 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31209_1_lane_dupsFlagged.bam	SRR1342647	@dbgap@:reads/SRP012000/SRS628306/SRX573371/SRR1342647/SRR1342647.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASLZE-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASLZE-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01D	DNA	EFO	SRS301142	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMGW-09A-01D A31232 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31232	SRX573393	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMGW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASMGW-09A-01D A31232 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31232_1_lane_dupsFlagged.bam	SRR1342671	@dbgap@:reads/SRP012000/SRS301142/SRX573393/SRR1342671/SRR1342671.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASMGW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASMGW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01D	DNA	EFO	SRS301142	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMGW-09A-01D A31232 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31232	SRX573393	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMGW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASMGW-09A-01D A31232 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31232_1_lane_dupsFlagged.bam	SRR1342671	@dbgap@:reads/SRP012000/SRS301142/SRX573393/SRR1342671/SRR1342671.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMGW-09A-01D_TARGET-20-PASMGW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01D	DNA	EFO	SRS301142	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMGW-09A-01D A31232 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31232	SRX573393	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMGW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASMGW-09A-01D A31232 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31232_1_lane_dupsFlagged.bam	SRR1342671	@dbgap@:reads/SRP012000/SRS301142/SRX573393/SRR1342671/SRR1342671.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMGW-09A-01D_TARGET-20-PASMGW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMGW-14A-01D A41645 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41645	SRX593538	"Specific Capture analysis of normal sample TARGET-20-PASMGW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASMGW-14A-01D A41645 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41645_1_lane_dupsFlagged.bam	SRR1385981	@dbgap@:reads/SRP012000/SRS301143/SRX593538/SRR1385981/SRR1385981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASMGW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASMGW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMGW-14A-01D A41645 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41645	SRX593538	"Specific Capture analysis of normal sample TARGET-20-PASMGW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASMGW-14A-01D A41645 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41645_1_lane_dupsFlagged.bam	SRR1385981	@dbgap@:reads/SRP012000/SRS301143/SRX593538/SRR1385981/SRR1385981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMGW-09A-01D_TARGET-20-PASMGW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMGW-14A-01D A41645 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41645	SRX593538	"Specific Capture analysis of normal sample TARGET-20-PASMGW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASMGW-14A-01D A41645 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41645_1_lane_dupsFlagged.bam	SRR1385981	@dbgap@:reads/SRP012000/SRS301143/SRX593538/SRR1385981/SRR1385981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMGW-09A-01D_TARGET-20-PASMGW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMGW-14A-01D A41645 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41645	SRX593538	"Specific Capture analysis of normal sample TARGET-20-PASMGW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASMGW-14A-01D A41645 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41645_1_lane_dupsFlagged.bam	SRR1385981	@dbgap@:reads/SRP012000/SRS301143/SRX593538/SRR1385981/SRR1385981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMGW-40A-01D_TARGET-20-PASMGW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-14A-01D	DNA	EFO	SRS301143	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMGW-14A-01D A41645 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41645	SRX593538	"Specific Capture analysis of normal sample TARGET-20-PASMGW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASMGW-14A-01D A41645 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41645_1_lane_dupsFlagged.bam	SRR1385981	@dbgap@:reads/SRP012000/SRS301143/SRX593538/SRR1385981/SRR1385981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMGW-40A-01D_TARGET-20-PASMGW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-40A-01D	DNA	EFO	SRS301144	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMGW-40A-01D A42752 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42752	SRX597991	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMGW-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASMGW-40A-01D A42752 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42752_1_lane_dupsFlagged.bam	SRR1395286	@dbgap@:reads/SRP012000/SRS301144/SRX597991/SRR1395286/SRR1395286.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASMGW-40A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASMGW-40A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-40A-01D	DNA	EFO	SRS301144	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMGW-40A-01D A42752 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42752	SRX597991	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMGW-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASMGW-40A-01D A42752 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42752_1_lane_dupsFlagged.bam	SRR1395286	@dbgap@:reads/SRP012000/SRS301144/SRX597991/SRR1395286/SRR1395286.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMGW-40A-01D_TARGET-20-PASMGW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-40A-01D	DNA	EFO	SRS301144	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMGW-40A-01D A42752 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42752	SRX597991	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMGW-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASMGW-40A-01D A42752 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42752_1_lane_dupsFlagged.bam	SRR1395286	@dbgap@:reads/SRP012000/SRS301144/SRX597991/SRR1395286/SRR1395286.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMGW-40A-01D_TARGET-20-PASMGW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-02D	DNA	EFO	SRS628957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMHY-03A-02D A32275 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32275	SRX575012	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMHY-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASMHY-03A-02D A32275 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32275_1_lane_dupsFlagged.bam	SRR1346124	@dbgap@:reads/SRP012000/SRS628957/SRX575012/SRR1346124/SRR1346124.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASMHY-03A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASMHY-03A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-02D	DNA	EFO	SRS628957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMHY-03A-02D A32275 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32275	SRX575012	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMHY-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASMHY-03A-02D A32275 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32275_1_lane_dupsFlagged.bam	SRR1346124	@dbgap@:reads/SRP012000/SRS628957/SRX575012/SRR1346124/SRR1346124.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMHY-03A-02D_TARGET-20-PASMHY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-02D	DNA	EFO	SRS628957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMHY-03A-02D A32275 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32275	SRX575012	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMHY-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASMHY-03A-02D A32275 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32275_1_lane_dupsFlagged.bam	SRR1346124	@dbgap@:reads/SRP012000/SRS628957/SRX575012/SRR1346124/SRR1346124.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMHY-03A-02D_TARGET-20-PASMHY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-04A-02D	DNA	EFO	SRS270781	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMHY-04A-02D A42278 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42278	SRX597723	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMHY-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASMHY-04A-02D A42278 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42278_1_lane_dupsFlagged.bam	SRR1395031	@dbgap@:reads/SRP012000/SRS270781/SRX597723/SRR1395031/SRR1395031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASMHY-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASMHY-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-04A-02D	DNA	EFO	SRS270781	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMHY-04A-02D A42278 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42278	SRX597723	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMHY-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASMHY-04A-02D A42278 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42278_1_lane_dupsFlagged.bam	SRR1395031	@dbgap@:reads/SRP012000/SRS270781/SRX597723/SRR1395031/SRR1395031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMHY-04A-02D_TARGET-20-PASMHY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-04A-02D	DNA	EFO	SRS270781	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMHY-04A-02D A42278 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42278	SRX597723	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMHY-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASMHY-04A-02D A42278 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42278_1_lane_dupsFlagged.bam	SRR1395031	@dbgap@:reads/SRP012000/SRS270781/SRX597723/SRR1395031/SRR1395031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMHY-04A-02D_TARGET-20-PASMHY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-14A-01D	DNA	EFO	SRS635930	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMHY-14A-01D A42504 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42504	SRX593890	"Specific Capture analysis of normal sample TARGET-20-PASMHY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASMHY-14A-01D A42504 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42504_1_lane_dupsFlagged.bam	SRR1386360	@dbgap@:reads/SRP012000/SRS635930/SRX593890/SRR1386360/SRR1386360.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASMHY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASMHY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-14A-01D	DNA	EFO	SRS635930	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMHY-14A-01D A42504 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42504	SRX593890	"Specific Capture analysis of normal sample TARGET-20-PASMHY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASMHY-14A-01D A42504 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42504_1_lane_dupsFlagged.bam	SRR1386360	@dbgap@:reads/SRP012000/SRS635930/SRX593890/SRR1386360/SRR1386360.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMHY-03A-02D_TARGET-20-PASMHY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-14A-01D	DNA	EFO	SRS635930	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMHY-14A-01D A42504 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42504	SRX593890	"Specific Capture analysis of normal sample TARGET-20-PASMHY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASMHY-14A-01D A42504 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42504_1_lane_dupsFlagged.bam	SRR1386360	@dbgap@:reads/SRP012000/SRS635930/SRX593890/SRR1386360/SRR1386360.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMHY-03A-02D_TARGET-20-PASMHY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-14A-01D	DNA	EFO	SRS635930	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMHY-14A-01D A42504 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42504	SRX593890	"Specific Capture analysis of normal sample TARGET-20-PASMHY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASMHY-14A-01D A42504 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42504_1_lane_dupsFlagged.bam	SRR1386360	@dbgap@:reads/SRP012000/SRS635930/SRX593890/SRR1386360/SRR1386360.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMHY-04A-02D_TARGET-20-PASMHY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-14A-01D	DNA	EFO	SRS635930	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMHY-14A-01D A42504 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42504	SRX593890	"Specific Capture analysis of normal sample TARGET-20-PASMHY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASMHY-14A-01D A42504 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42504_1_lane_dupsFlagged.bam	SRR1386360	@dbgap@:reads/SRP012000/SRS635930/SRX593890/SRR1386360/SRR1386360.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMHY-04A-02D_TARGET-20-PASMHY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMPC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMPC-03A-01D	DNA	EFO	SRS633650	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMPC-03A-01D A33428 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33428	SRX587944	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMPC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASMPC-03A-01D A33428 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33428_1_lane_dupsFlagged.bam	SRR1373852	@dbgap@:reads/SRP012000/SRS633650/SRX587944/SRR1373852/SRR1373852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASMPC-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASMPC-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASMPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMPC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMPC-03A-01D	DNA	EFO	SRS633650	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMPC-03A-01D A33428 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33428	SRX587944	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMPC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASMPC-03A-01D A33428 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33428_1_lane_dupsFlagged.bam	SRR1373852	@dbgap@:reads/SRP012000/SRS633650/SRX587944/SRR1373852/SRR1373852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMPC-03A-01D_TARGET-20-PASMPC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMPC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMPC-03A-01D	DNA	EFO	SRS633650	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMPC-03A-01D A33428 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33428	SRX587944	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMPC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASMPC-03A-01D A33428 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33428_1_lane_dupsFlagged.bam	SRR1373852	@dbgap@:reads/SRP012000/SRS633650/SRX587944/SRR1373852/SRR1373852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMPC-03A-01D_TARGET-20-PASMPC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMPC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMPC-14A-01D	DNA	EFO	SRS635717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMPC-14A-01D A41647 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41647	SRX593543	"Specific Capture analysis of normal sample TARGET-20-PASMPC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASMPC-14A-01D A41647 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41647_1_lane_dupsFlagged.bam	SRR1386010	@dbgap@:reads/SRP012000/SRS635717/SRX593543/SRR1386010/SRR1386010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASMPC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASMPC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASMPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMPC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMPC-14A-01D	DNA	EFO	SRS635717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMPC-14A-01D A41647 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41647	SRX593543	"Specific Capture analysis of normal sample TARGET-20-PASMPC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASMPC-14A-01D A41647 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41647_1_lane_dupsFlagged.bam	SRR1386010	@dbgap@:reads/SRP012000/SRS635717/SRX593543/SRR1386010/SRR1386010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMPC-03A-01D_TARGET-20-PASMPC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMPC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMPC-14A-01D	DNA	EFO	SRS635717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMPC-14A-01D A41647 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41647	SRX593543	"Specific Capture analysis of normal sample TARGET-20-PASMPC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASMPC-14A-01D A41647 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41647_1_lane_dupsFlagged.bam	SRR1386010	@dbgap@:reads/SRP012000/SRS635717/SRX593543/SRR1386010/SRR1386010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMPC-03A-01D_TARGET-20-PASMPC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMRU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMRU-09A-01D	DNA	EFO	SRS635527	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMRU-09A-01D A41822 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41822	SRX593297	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMRU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASMRU-09A-01D A41822 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41822_1_lane_dupsFlagged.bam	SRR1385774	@dbgap@:reads/SRP012000/SRS635527/SRX593297/SRR1385774/SRR1385774.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASMRU-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASMRU-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASMRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMRU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMRU-09A-01D	DNA	EFO	SRS635527	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMRU-09A-01D A41822 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41822	SRX593297	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMRU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASMRU-09A-01D A41822 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41822_1_lane_dupsFlagged.bam	SRR1385774	@dbgap@:reads/SRP012000/SRS635527/SRX593297/SRR1385774/SRR1385774.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMRU-09A-01D_TARGET-20-PASMRU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMRU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMRU-09A-01D	DNA	EFO	SRS635527	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMRU-09A-01D A41822 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41822	SRX593297	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMRU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASMRU-09A-01D A41822 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41822_1_lane_dupsFlagged.bam	SRR1385774	@dbgap@:reads/SRP012000/SRS635527/SRX593297/SRR1385774/SRR1385774.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMRU-09A-01D_TARGET-20-PASMRU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMRU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMRU-14A-01D	DNA	EFO	SRS635929	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMRU-14A-01D A42505 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42505	SRX593888	"Specific Capture analysis of normal sample TARGET-20-PASMRU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASMRU-14A-01D A42505 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42505_1_lane_dupsFlagged.bam	SRR1386366	@dbgap@:reads/SRP012000/SRS635929/SRX593888/SRR1386366/SRR1386366.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASMRU-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASMRU-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASMRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMRU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMRU-14A-01D	DNA	EFO	SRS635929	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMRU-14A-01D A42505 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42505	SRX593888	"Specific Capture analysis of normal sample TARGET-20-PASMRU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASMRU-14A-01D A42505 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42505_1_lane_dupsFlagged.bam	SRR1386366	@dbgap@:reads/SRP012000/SRS635929/SRX593888/SRR1386366/SRR1386366.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMRU-09A-01D_TARGET-20-PASMRU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMRU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMRU-14A-01D	DNA	EFO	SRS635929	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMRU-14A-01D A42505 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42505	SRX593888	"Specific Capture analysis of normal sample TARGET-20-PASMRU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASMRU-14A-01D A42505 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42505_1_lane_dupsFlagged.bam	SRR1386366	@dbgap@:reads/SRP012000/SRS635929/SRX593888/SRR1386366/SRR1386366.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMRU-09A-01D_TARGET-20-PASMRU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMTB-09A-01D	DNA	EFO	SRS633648	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMTB-09A-01D A33444 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33444	SRX587942	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMTB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASMTB-09A-01D A33444 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33444_1_lane_dupsFlagged.bam	SRR1373806	@dbgap@:reads/SRP012000/SRS633648/SRX587942/SRR1373806/SRR1373806.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASMTB-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASMTB-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASMTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMTB-09A-01D	DNA	EFO	SRS633648	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMTB-09A-01D A33444 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33444	SRX587942	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMTB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASMTB-09A-01D A33444 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33444_1_lane_dupsFlagged.bam	SRR1373806	@dbgap@:reads/SRP012000/SRS633648/SRX587942/SRR1373806/SRR1373806.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMTB-09A-01D_TARGET-20-PASMTB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMTB-09A-01D	DNA	EFO	SRS633648	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMTB-09A-01D A33444 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33444	SRX587942	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMTB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASMTB-09A-01D A33444 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33444_1_lane_dupsFlagged.bam	SRR1373806	@dbgap@:reads/SRP012000/SRS633648/SRX587942/SRR1373806/SRR1373806.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMTB-09A-01D_TARGET-20-PASMTB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMTB-14A-01D	DNA	EFO	SRS635690	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMTB-14A-01D A41650 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41650	SRX593513	"Specific Capture analysis of normal sample TARGET-20-PASMTB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASMTB-14A-01D A41650 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41650_1_lane_dupsFlagged.bam	SRR1385960	@dbgap@:reads/SRP012000/SRS635690/SRX593513/SRR1385960/SRR1385960.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASMTB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASMTB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASMTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMTB-14A-01D	DNA	EFO	SRS635690	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMTB-14A-01D A41650 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41650	SRX593513	"Specific Capture analysis of normal sample TARGET-20-PASMTB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASMTB-14A-01D A41650 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41650_1_lane_dupsFlagged.bam	SRR1385960	@dbgap@:reads/SRP012000/SRS635690/SRX593513/SRR1385960/SRR1385960.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMTB-09A-01D_TARGET-20-PASMTB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMTB-14A-01D	DNA	EFO	SRS635690	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMTB-14A-01D A41650 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41650	SRX593513	"Specific Capture analysis of normal sample TARGET-20-PASMTB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASMTB-14A-01D A41650 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41650_1_lane_dupsFlagged.bam	SRR1385960	@dbgap@:reads/SRP012000/SRS635690/SRX593513/SRR1385960/SRR1385960.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMTB-09A-01D_TARGET-20-PASMTB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMTK-09A-01D	DNA	EFO	SRS635532	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMTK-09A-01D A41821 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41821	SRX593308	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMTK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASMTK-09A-01D A41821 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41821_1_lane_dupsFlagged.bam	SRR1385836	@dbgap@:reads/SRP012000/SRS635532/SRX593308/SRR1385836/SRR1385836.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASMTK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASMTK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASMTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMTK-09A-01D	DNA	EFO	SRS635532	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMTK-09A-01D A41821 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41821	SRX593308	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMTK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASMTK-09A-01D A41821 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41821_1_lane_dupsFlagged.bam	SRR1385836	@dbgap@:reads/SRP012000/SRS635532/SRX593308/SRR1385836/SRR1385836.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMTK-09A-01D_TARGET-20-PASMTK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMTK-09A-01D	DNA	EFO	SRS635532	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMTK-09A-01D A41821 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41821	SRX593308	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMTK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASMTK-09A-01D A41821 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41821_1_lane_dupsFlagged.bam	SRR1385836	@dbgap@:reads/SRP012000/SRS635532/SRX593308/SRR1385836/SRR1385836.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMTK-09A-01D_TARGET-20-PASMTK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMTK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMTK-14A-01D	DNA	EFO	SRS635684	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMTK-14A-01D A41651 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41651	SRX593509	"Specific Capture analysis of normal sample TARGET-20-PASMTK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASMTK-14A-01D A41651 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41651_1_lane_dupsFlagged.bam	SRR1385969	@dbgap@:reads/SRP012000/SRS635684/SRX593509/SRR1385969/SRR1385969.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASMTK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASMTK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASMTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMTK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMTK-14A-01D	DNA	EFO	SRS635684	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMTK-14A-01D A41651 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41651	SRX593509	"Specific Capture analysis of normal sample TARGET-20-PASMTK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASMTK-14A-01D A41651 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41651_1_lane_dupsFlagged.bam	SRR1385969	@dbgap@:reads/SRP012000/SRS635684/SRX593509/SRR1385969/SRR1385969.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMTK-09A-01D_TARGET-20-PASMTK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMTK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMTK-14A-01D	DNA	EFO	SRS635684	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMTK-14A-01D A41651 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41651	SRX593509	"Specific Capture analysis of normal sample TARGET-20-PASMTK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASMTK-14A-01D A41651 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41651_1_lane_dupsFlagged.bam	SRR1385969	@dbgap@:reads/SRP012000/SRS635684/SRX593509/SRR1385969/SRR1385969.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMTK-09A-01D_TARGET-20-PASMTK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYP-03A-01D	DNA	EFO	SRS633644	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYP-03A-01D A33429 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33429	SRX587938	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMYP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASMYP-03A-01D A33429 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33429_1_lane_dupsFlagged.bam	SRR1373814	@dbgap@:reads/SRP012000/SRS633644/SRX587938/SRR1373814/SRR1373814.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASMYP-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASMYP-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASMYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYP-03A-01D	DNA	EFO	SRS633644	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYP-03A-01D A33429 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33429	SRX587938	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMYP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASMYP-03A-01D A33429 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33429_1_lane_dupsFlagged.bam	SRR1373814	@dbgap@:reads/SRP012000/SRS633644/SRX587938/SRR1373814/SRR1373814.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMYP-03A-01D_TARGET-20-PASMYP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYP-03A-01D	DNA	EFO	SRS633644	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYP-03A-01D A33429 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33429	SRX587938	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMYP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASMYP-03A-01D A33429 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33429_1_lane_dupsFlagged.bam	SRR1373814	@dbgap@:reads/SRP012000/SRS633644/SRX587938/SRR1373814/SRR1373814.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMYP-03A-01D_TARGET-20-PASMYP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYP-14A-01D	DNA	EFO	SRS635637	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYP-14A-01D A41649 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41649	SRX593458	"Specific Capture analysis of normal sample TARGET-20-PASMYP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASMYP-14A-01D A41649 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41649_1_lane_dupsFlagged.bam	SRR1385947	@dbgap@:reads/SRP012000/SRS635637/SRX593458/SRR1385947/SRR1385947.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASMYP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASMYP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASMYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYP-14A-01D	DNA	EFO	SRS635637	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYP-14A-01D A41649 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41649	SRX593458	"Specific Capture analysis of normal sample TARGET-20-PASMYP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASMYP-14A-01D A41649 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41649_1_lane_dupsFlagged.bam	SRR1385947	@dbgap@:reads/SRP012000/SRS635637/SRX593458/SRR1385947/SRR1385947.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMYP-03A-01D_TARGET-20-PASMYP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASMYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYP-14A-01D	DNA	EFO	SRS635637	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYP-14A-01D A41649 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41649	SRX593458	"Specific Capture analysis of normal sample TARGET-20-PASMYP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASMYP-14A-01D A41649 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41649_1_lane_dupsFlagged.bam	SRR1385947	@dbgap@:reads/SRP012000/SRS635637/SRX593458/SRR1385947/SRR1385947.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMYP-03A-01D_TARGET-20-PASMYP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYS-04A-02D A42231 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42231	SRX597690	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMYS-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASMYS-04A-02D A42231 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42231_1_lane_dupsFlagged.bam	SRR1395038	@dbgap@:reads/SRP012000/SRS270784/SRX597690/SRR1395038/SRR1395038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASMYS-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASMYS-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYS-04A-02D A42231 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42231	SRX597690	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMYS-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASMYS-04A-02D A42231 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42231_1_lane_dupsFlagged.bam	SRR1395038	@dbgap@:reads/SRP012000/SRS270784/SRX597690/SRR1395038/SRR1395038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMYS-04A-02D_TARGET-20-PASMYS-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02D	DNA	EFO	SRS270784	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYS-04A-02D A42231 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42231	SRX597690	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMYS-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASMYS-04A-02D A42231 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42231_1_lane_dupsFlagged.bam	SRR1395038	@dbgap@:reads/SRP012000/SRS270784/SRX597690/SRR1395038/SRR1395038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMYS-04A-02D_TARGET-20-PASMYS-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-03D	DNA	EFO	SRS628931	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYS-09A-03D A32276 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32276	SRX574987	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMYS-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASMYS-09A-03D A32276 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32276_1_lane_dupsFlagged.bam	SRR1346140	@dbgap@:reads/SRP012000/SRS628931/SRX574987/SRR1346140/SRR1346140.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASMYS-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASMYS-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-03D	DNA	EFO	SRS628931	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYS-09A-03D A32276 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32276	SRX574987	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMYS-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASMYS-09A-03D A32276 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32276_1_lane_dupsFlagged.bam	SRR1346140	@dbgap@:reads/SRP012000/SRS628931/SRX574987/SRR1346140/SRR1346140.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMYS-09A-03D_TARGET-20-PASMYS-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-09A-03D	DNA	EFO	SRS628931	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYS-09A-03D A32276 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32276	SRX574987	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASMYS-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASMYS-09A-03D A32276 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32276_1_lane_dupsFlagged.bam	SRR1346140	@dbgap@:reads/SRP012000/SRS628931/SRX574987/SRR1346140/SRR1346140.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMYS-09A-03D_TARGET-20-PASMYS-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYS-14A-02D A42367 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42367	SRX593545	"Specific Capture analysis of normal sample TARGET-20-PASMYS-14A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASMYS-14A-02D A42367 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42367_1_lane_dupsFlagged.bam	SRR1386088	@dbgap@:reads/SRP012000/SRS270785/SRX593545/SRR1386088/SRR1386088.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASMYS-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASMYS-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYS-14A-02D A42367 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42367	SRX593545	"Specific Capture analysis of normal sample TARGET-20-PASMYS-14A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASMYS-14A-02D A42367 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42367_1_lane_dupsFlagged.bam	SRR1386088	@dbgap@:reads/SRP012000/SRS270785/SRX593545/SRR1386088/SRR1386088.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMYS-04A-02D_TARGET-20-PASMYS-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYS-14A-02D A42367 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42367	SRX593545	"Specific Capture analysis of normal sample TARGET-20-PASMYS-14A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASMYS-14A-02D A42367 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42367_1_lane_dupsFlagged.bam	SRR1386088	@dbgap@:reads/SRP012000/SRS270785/SRX593545/SRR1386088/SRR1386088.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMYS-04A-02D_TARGET-20-PASMYS-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYS-14A-02D A42367 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42367	SRX593545	"Specific Capture analysis of normal sample TARGET-20-PASMYS-14A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASMYS-14A-02D A42367 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42367_1_lane_dupsFlagged.bam	SRR1386088	@dbgap@:reads/SRP012000/SRS270785/SRX593545/SRR1386088/SRR1386088.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMYS-09A-03D_TARGET-20-PASMYS-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-14A-02D	DNA	EFO	SRS270785	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYS-14A-02D A42367 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42367	SRX593545	"Specific Capture analysis of normal sample TARGET-20-PASMYS-14A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASMYS-14A-02D A42367 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42367_1_lane_dupsFlagged.bam	SRR1386088	@dbgap@:reads/SRP012000/SRS270785/SRX593545/SRR1386088/SRR1386088.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASMYS-09A-03D_TARGET-20-PASMYS-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNAL-09A-01D	DNA	EFO	SRS635549	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNAL-09A-01D A41803 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41803	SRX593347	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASNAL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASNAL-09A-01D A41803 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41803_1_lane_dupsFlagged.bam	SRR1385820	@dbgap@:reads/SRP012000/SRS635549/SRX593347/SRR1385820/SRR1385820.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASNAL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASNAL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASNDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNDA-09A-01D	DNA	EFO	SRS635557	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNDA-09A-01D A41805 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41805	SRX593367	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASNDA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASNDA-09A-01D A41805 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41805_1_lane_dupsFlagged.bam	SRR1385850	@dbgap@:reads/SRP012000/SRS635557/SRX593367/SRR1385850/SRR1385850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASNDA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASNDA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASNDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNDA-09A-01D	DNA	EFO	SRS635557	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNDA-09A-01D A41805 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41805	SRX593367	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASNDA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASNDA-09A-01D A41805 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41805_1_lane_dupsFlagged.bam	SRR1385850	@dbgap@:reads/SRP012000/SRS635557/SRX593367/SRR1385850/SRR1385850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNDA-09A-01D_TARGET-20-PASNDA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASNDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNDA-09A-01D	DNA	EFO	SRS635557	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNDA-09A-01D A41805 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41805	SRX593367	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASNDA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASNDA-09A-01D A41805 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41805_1_lane_dupsFlagged.bam	SRR1385850	@dbgap@:reads/SRP012000/SRS635557/SRX593367/SRR1385850/SRR1385850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNDA-09A-01D_TARGET-20-PASNDA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASNDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNDA-14A-01D	DNA	EFO	SRS637428	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNDA-14A-01D A42822 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42822	SRX597837	"Specific Capture analysis of normal sample TARGET-20-PASNDA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASNDA-14A-01D A42822 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42822_1_lane_dupsFlagged.bam	SRR1395058	@dbgap@:reads/SRP012000/SRS637428/SRX597837/SRR1395058/SRR1395058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASNDA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASNDA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASNDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNDA-14A-01D	DNA	EFO	SRS637428	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNDA-14A-01D A42822 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42822	SRX597837	"Specific Capture analysis of normal sample TARGET-20-PASNDA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASNDA-14A-01D A42822 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42822_1_lane_dupsFlagged.bam	SRR1395058	@dbgap@:reads/SRP012000/SRS637428/SRX597837/SRR1395058/SRR1395058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNDA-09A-01D_TARGET-20-PASNDA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASNDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNDA-14A-01D	DNA	EFO	SRS637428	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNDA-14A-01D A42822 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42822	SRX597837	"Specific Capture analysis of normal sample TARGET-20-PASNDA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASNDA-14A-01D A42822 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42822_1_lane_dupsFlagged.bam	SRR1395058	@dbgap@:reads/SRP012000/SRS637428/SRX597837/SRR1395058/SRR1395058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNDA-09A-01D_TARGET-20-PASNDA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASNDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNDH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNDH-09A-01D	DNA	EFO	SRS635534	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNDH-09A-01D A41804 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41804	SRX593310	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASNDH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASNDH-09A-01D A41804 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41804_1_lane_dupsFlagged.bam	SRR1385847	@dbgap@:reads/SRP012000/SRS635534/SRX593310/SRR1385847/SRR1385847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASNDH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASNDH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASNDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNDH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNDH-09A-01D	DNA	EFO	SRS635534	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNDH-09A-01D A41804 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41804	SRX593310	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASNDH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASNDH-09A-01D A41804 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41804_1_lane_dupsFlagged.bam	SRR1385847	@dbgap@:reads/SRP012000/SRS635534/SRX593310/SRR1385847/SRR1385847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNDH-09A-01D_TARGET-20-PASNDH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASNDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNDH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNDH-09A-01D	DNA	EFO	SRS635534	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNDH-09A-01D A41804 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41804	SRX593310	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASNDH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASNDH-09A-01D A41804 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41804_1_lane_dupsFlagged.bam	SRR1385847	@dbgap@:reads/SRP012000/SRS635534/SRX593310/SRR1385847/SRR1385847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNDH-09A-01D_TARGET-20-PASNDH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASNDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNDH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNDH-14A-01D	DNA	EFO	SRS635675	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNDH-14A-01D A41646 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41646	SRX593500	"Specific Capture analysis of normal sample TARGET-20-PASNDH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASNDH-14A-01D A41646 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41646_1_lane_dupsFlagged.bam	SRR1385935	@dbgap@:reads/SRP012000/SRS635675/SRX593500/SRR1385935/SRR1385935.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASNDH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASNDH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASNDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNDH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNDH-14A-01D	DNA	EFO	SRS635675	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNDH-14A-01D A41646 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41646	SRX593500	"Specific Capture analysis of normal sample TARGET-20-PASNDH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASNDH-14A-01D A41646 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41646_1_lane_dupsFlagged.bam	SRR1385935	@dbgap@:reads/SRP012000/SRS635675/SRX593500/SRR1385935/SRR1385935.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNDH-09A-01D_TARGET-20-PASNDH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASNDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNDH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNDH-14A-01D	DNA	EFO	SRS635675	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNDH-14A-01D A41646 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41646	SRX593500	"Specific Capture analysis of normal sample TARGET-20-PASNDH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASNDH-14A-01D A41646 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41646_1_lane_dupsFlagged.bam	SRR1385935	@dbgap@:reads/SRP012000/SRS635675/SRX593500/SRR1385935/SRR1385935.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNDH-09A-01D_TARGET-20-PASNDH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASNIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASNIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNIY-09A-02D	DNA	EFO	SRS628916	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNIY-09A-02D A32277 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32277	SRX574972	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASNIY-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASNIY-09A-02D A32277 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32277_1_lane_dupsFlagged.bam	SRR1346120	@dbgap@:reads/SRP012000/SRS628916/SRX574972/SRR1346120/SRR1346120.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASNIY-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASNIY-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASNIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASNIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNIY-09A-02D	DNA	EFO	SRS628916	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNIY-09A-02D A32277 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32277	SRX574972	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASNIY-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASNIY-09A-02D A32277 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32277_1_lane_dupsFlagged.bam	SRR1346120	@dbgap@:reads/SRP012000/SRS628916/SRX574972/SRR1346120/SRR1346120.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNIY-09A-02D_TARGET-20-PASNIY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASNIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASNIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNIY-09A-02D	DNA	EFO	SRS628916	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNIY-09A-02D A32277 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32277	SRX574972	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASNIY-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASNIY-09A-02D A32277 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32277_1_lane_dupsFlagged.bam	SRR1346120	@dbgap@:reads/SRP012000/SRS628916/SRX574972/SRR1346120/SRR1346120.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNIY-09A-02D_TARGET-20-PASNIY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASNIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASNIY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNIY-14A-01D	DNA	EFO	SRS635681	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNIY-14A-01D A41648 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41648	SRX593505	"Specific Capture analysis of normal sample TARGET-20-PASNIY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASNIY-14A-01D A41648 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41648_1_lane_dupsFlagged.bam	SRR1385952	@dbgap@:reads/SRP012000/SRS635681/SRX593505/SRR1385952/SRR1385952.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASNIY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASNIY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASNIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASNIY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNIY-14A-01D	DNA	EFO	SRS635681	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNIY-14A-01D A41648 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41648	SRX593505	"Specific Capture analysis of normal sample TARGET-20-PASNIY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASNIY-14A-01D A41648 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41648_1_lane_dupsFlagged.bam	SRR1385952	@dbgap@:reads/SRP012000/SRS635681/SRX593505/SRR1385952/SRR1385952.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNIY-09A-02D_TARGET-20-PASNIY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASNIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASNIY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNIY-14A-01D	DNA	EFO	SRS635681	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNIY-14A-01D A41648 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41648	SRX593505	"Specific Capture analysis of normal sample TARGET-20-PASNIY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASNIY-14A-01D A41648 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41648_1_lane_dupsFlagged.bam	SRR1385952	@dbgap@:reads/SRP012000/SRS635681/SRX593505/SRR1385952/SRR1385952.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNIY-09A-02D_TARGET-20-PASNIY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASNKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNKC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNKC-09A-01D	DNA	EFO	SRS635564	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNKC-09A-01D A41807 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41807	SRX593385	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASNKC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASNKC-09A-01D A41807 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41807_1_lane_dupsFlagged.bam	SRR1385801	@dbgap@:reads/SRP012000/SRS635564/SRX593385/SRR1385801/SRR1385801.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASNKC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASNKC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASNKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNKC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNKC-09A-01D	DNA	EFO	SRS635564	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNKC-09A-01D A41807 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41807	SRX593385	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASNKC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASNKC-09A-01D A41807 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41807_1_lane_dupsFlagged.bam	SRR1385801	@dbgap@:reads/SRP012000/SRS635564/SRX593385/SRR1385801/SRR1385801.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNKC-09A-01D_TARGET-20-PASNKC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASNKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNKC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNKC-09A-01D	DNA	EFO	SRS635564	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNKC-09A-01D A41807 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41807	SRX593385	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASNKC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASNKC-09A-01D A41807 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41807_1_lane_dupsFlagged.bam	SRR1385801	@dbgap@:reads/SRP012000/SRS635564/SRX593385/SRR1385801/SRR1385801.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNKC-09A-01D_TARGET-20-PASNKC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASNKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNKC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNKC-14A-01D	DNA	EFO	SRS635880	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNKC-14A-01D A42506 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42506	SRX593840	"Specific Capture analysis of normal sample TARGET-20-PASNKC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASNKC-14A-01D A42506 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42506_1_lane_dupsFlagged.bam	SRR1386337	@dbgap@:reads/SRP012000/SRS635880/SRX593840/SRR1386337/SRR1386337.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASNKC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASNKC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASNKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNKC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNKC-14A-01D	DNA	EFO	SRS635880	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNKC-14A-01D A42506 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42506	SRX593840	"Specific Capture analysis of normal sample TARGET-20-PASNKC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASNKC-14A-01D A42506 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42506_1_lane_dupsFlagged.bam	SRR1386337	@dbgap@:reads/SRP012000/SRS635880/SRX593840/SRR1386337/SRR1386337.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNKC-09A-01D_TARGET-20-PASNKC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASNKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNKC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNKC-14A-01D	DNA	EFO	SRS635880	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNKC-14A-01D A42506 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42506	SRX593840	"Specific Capture analysis of normal sample TARGET-20-PASNKC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASNKC-14A-01D A42506 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42506_1_lane_dupsFlagged.bam	SRR1386337	@dbgap@:reads/SRP012000/SRS635880/SRX593840/SRR1386337/SRR1386337.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNKC-09A-01D_TARGET-20-PASNKC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASNLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNLR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNLR-03A-01D	DNA	EFO	SRS635541	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNLR-03A-01D A41806 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41806	SRX593330	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASNLR-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASNLR-03A-01D A41806 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41806_1_lane_dupsFlagged.bam	SRR1385785	@dbgap@:reads/SRP012000/SRS635541/SRX593330/SRR1385785/SRR1385785.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASNLR-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASNLR-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASNLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNLR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNLR-03A-01D	DNA	EFO	SRS635541	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNLR-03A-01D A41806 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41806	SRX593330	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASNLR-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASNLR-03A-01D A41806 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41806_1_lane_dupsFlagged.bam	SRR1385785	@dbgap@:reads/SRP012000/SRS635541/SRX593330/SRR1385785/SRR1385785.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNLR-03A-01D_TARGET-20-PASNLR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASNLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNLR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNLR-03A-01D	DNA	EFO	SRS635541	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNLR-03A-01D A41806 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41806	SRX593330	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASNLR-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASNLR-03A-01D A41806 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41806_1_lane_dupsFlagged.bam	SRR1385785	@dbgap@:reads/SRP012000/SRS635541/SRX593330/SRR1385785/SRR1385785.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNLR-03A-01D_TARGET-20-PASNLR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASNLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNLR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNLR-14A-01D	DNA	EFO	SRS637365	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNLR-14A-01D A42823 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42823	SRX597771	"Specific Capture analysis of normal sample TARGET-20-PASNLR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASNLR-14A-01D A42823 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42823_1_lane_dupsFlagged.bam	SRR1395122	@dbgap@:reads/SRP012000/SRS637365/SRX597771/SRR1395122/SRR1395122.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASNLR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASNLR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASNLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNLR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNLR-14A-01D	DNA	EFO	SRS637365	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNLR-14A-01D A42823 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42823	SRX597771	"Specific Capture analysis of normal sample TARGET-20-PASNLR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASNLR-14A-01D A42823 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42823_1_lane_dupsFlagged.bam	SRR1395122	@dbgap@:reads/SRP012000/SRS637365/SRX597771/SRR1395122/SRR1395122.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNLR-03A-01D_TARGET-20-PASNLR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASNLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNLR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNLR-14A-01D	DNA	EFO	SRS637365	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNLR-14A-01D A42823 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42823	SRX597771	"Specific Capture analysis of normal sample TARGET-20-PASNLR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASNLR-14A-01D A42823 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42823_1_lane_dupsFlagged.bam	SRR1395122	@dbgap@:reads/SRP012000/SRS637365/SRX597771/SRR1395122/SRR1395122.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNLR-03A-01D_TARGET-20-PASNLR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASNYB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNYB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNYB-09A-01D	DNA	EFO	SRS635543	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNYB-09A-01D A41808 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41808	SRX593340	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASNYB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASNYB-09A-01D A41808 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41808_1_lane_dupsFlagged.bam	SRR1385827	@dbgap@:reads/SRP012000/SRS635543/SRX593340/SRR1385827/SRR1385827.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASNYB-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASNYB-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASNYB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNYB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNYB-09A-01D	DNA	EFO	SRS635543	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNYB-09A-01D A41808 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41808	SRX593340	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASNYB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASNYB-09A-01D A41808 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41808_1_lane_dupsFlagged.bam	SRR1385827	@dbgap@:reads/SRP012000/SRS635543/SRX593340/SRR1385827/SRR1385827.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNYB-09A-01D_TARGET-20-PASNYB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASNYB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNYB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNYB-09A-01D	DNA	EFO	SRS635543	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNYB-09A-01D A41808 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41808	SRX593340	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASNYB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASNYB-09A-01D A41808 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41808_1_lane_dupsFlagged.bam	SRR1385827	@dbgap@:reads/SRP012000/SRS635543/SRX593340/SRR1385827/SRR1385827.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNYB-09A-01D_TARGET-20-PASNYB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASNYB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNYB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNYB-14A-01D	DNA	EFO	SRS635897	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNYB-14A-01D A42507 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42507	SRX593857	"Specific Capture analysis of normal sample TARGET-20-PASNYB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASNYB-14A-01D A42507 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42507_1_lane_dupsFlagged.bam	SRR1386390	@dbgap@:reads/SRP012000/SRS635897/SRX593857/SRR1386390/SRR1386390.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASNYB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASNYB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASNYB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNYB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNYB-14A-01D	DNA	EFO	SRS635897	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNYB-14A-01D A42507 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42507	SRX593857	"Specific Capture analysis of normal sample TARGET-20-PASNYB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASNYB-14A-01D A42507 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42507_1_lane_dupsFlagged.bam	SRR1386390	@dbgap@:reads/SRP012000/SRS635897/SRX593857/SRR1386390/SRR1386390.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNYB-09A-01D_TARGET-20-PASNYB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASNYB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASNYB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNYB-14A-01D	DNA	EFO	SRS635897	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNYB-14A-01D A42507 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42507	SRX593857	"Specific Capture analysis of normal sample TARGET-20-PASNYB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASNYB-14A-01D A42507 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42507_1_lane_dupsFlagged.bam	SRR1386390	@dbgap@:reads/SRP012000/SRS635897/SRX593857/SRR1386390/SRR1386390.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASNYB-09A-01D_TARGET-20-PASNYB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPFE-09A-01D	DNA	EFO	SRS628959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPFE-09A-01D A32335 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32335	SRX575015	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPFE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASPFE-09A-01D A32335 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32335_1_lane_dupsFlagged.bam	SRR1346150	@dbgap@:reads/SRP012000/SRS628959/SRX575015/SRR1346150/SRR1346150.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPFE-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPFE-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASPFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPFE-09A-01D	DNA	EFO	SRS628959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPFE-09A-01D A32335 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32335	SRX575015	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPFE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASPFE-09A-01D A32335 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32335_1_lane_dupsFlagged.bam	SRR1346150	@dbgap@:reads/SRP012000/SRS628959/SRX575015/SRR1346150/SRR1346150.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPFE-09A-01D_TARGET-20-PASPFE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPFE-09A-01D	DNA	EFO	SRS628959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPFE-09A-01D A32335 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32335	SRX575015	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPFE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASPFE-09A-01D A32335 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32335_1_lane_dupsFlagged.bam	SRR1346150	@dbgap@:reads/SRP012000/SRS628959/SRX575015/SRR1346150/SRR1346150.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPFE-09A-01D_TARGET-20-PASPFE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPFE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPFE-14A-01D	DNA	EFO	SRS637439	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPFE-14A-01D A42824 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42824	SRX597851	"Specific Capture analysis of normal sample TARGET-20-PASPFE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASPFE-14A-01D A42824 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42824_1_lane_dupsFlagged.bam	SRR1395054	@dbgap@:reads/SRP012000/SRS637439/SRX597851/SRR1395054/SRR1395054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPFE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPFE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASPFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPFE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPFE-14A-01D	DNA	EFO	SRS637439	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPFE-14A-01D A42824 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42824	SRX597851	"Specific Capture analysis of normal sample TARGET-20-PASPFE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASPFE-14A-01D A42824 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42824_1_lane_dupsFlagged.bam	SRR1395054	@dbgap@:reads/SRP012000/SRS637439/SRX597851/SRR1395054/SRR1395054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPFE-09A-01D_TARGET-20-PASPFE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPFE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPFE-14A-01D	DNA	EFO	SRS637439	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPFE-14A-01D A42824 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42824	SRX597851	"Specific Capture analysis of normal sample TARGET-20-PASPFE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASPFE-14A-01D A42824 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42824_1_lane_dupsFlagged.bam	SRR1395054	@dbgap@:reads/SRP012000/SRS637439/SRX597851/SRR1395054/SRR1395054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPFE-09A-01D_TARGET-20-PASPFE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-02D	DNA	EFO	SRS628891	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPGA-09A-02D A32278 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32278	SRX574947	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPGA-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASPGA-09A-02D A32278 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32278_1_lane_dupsFlagged.bam	SRR1346151	@dbgap@:reads/SRP012000/SRS628891/SRX574947/SRR1346151/SRR1346151.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPGA-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPGA-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-02D	DNA	EFO	SRS628891	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPGA-09A-02D A32278 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32278	SRX574947	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPGA-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASPGA-09A-02D A32278 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32278_1_lane_dupsFlagged.bam	SRR1346151	@dbgap@:reads/SRP012000/SRS628891/SRX574947/SRR1346151/SRR1346151.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPGA-09A-02D_TARGET-20-PASPGA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-02D	DNA	EFO	SRS628891	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPGA-09A-02D A32278 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32278	SRX574947	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPGA-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASPGA-09A-02D A32278 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32278_1_lane_dupsFlagged.bam	SRR1346151	@dbgap@:reads/SRP012000/SRS628891/SRX574947/SRR1346151/SRR1346151.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPGA-09A-02D_TARGET-20-PASPGA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-14A-01D	DNA	EFO	SRS489665	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPGA-14A-01D A42825 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42825	SRX597816	"Specific Capture analysis of normal sample TARGET-20-PASPGA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASPGA-14A-01D A42825 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42825_1_lane_dupsFlagged.bam	SRR1395076	@dbgap@:reads/SRP012000/SRS489665/SRX597816/SRR1395076/SRR1395076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPGA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPGA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-14A-01D	DNA	EFO	SRS489665	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPGA-14A-01D A42825 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42825	SRX597816	"Specific Capture analysis of normal sample TARGET-20-PASPGA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASPGA-14A-01D A42825 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42825_1_lane_dupsFlagged.bam	SRR1395076	@dbgap@:reads/SRP012000/SRS489665/SRX597816/SRR1395076/SRR1395076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPGA-09A-02D_TARGET-20-PASPGA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-14A-01D	DNA	EFO	SRS489665	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPGA-14A-01D A42825 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42825	SRX597816	"Specific Capture analysis of normal sample TARGET-20-PASPGA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASPGA-14A-01D A42825 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42825_1_lane_dupsFlagged.bam	SRR1395076	@dbgap@:reads/SRP012000/SRS489665/SRX597816/SRR1395076/SRR1395076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPGA-09A-02D_TARGET-20-PASPGA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPIN-09A-01D	DNA	EFO	SRS635591	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPIN-09A-01D A41909 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41909	SRX593410	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPIN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASPIN-09A-01D A41909 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41909_1_lane_dupsFlagged.bam	SRR1385916	@dbgap@:reads/SRP012000/SRS635591/SRX593410/SRR1385916/SRR1385916.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPIN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPIN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASPIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPIN-09A-01D	DNA	EFO	SRS635591	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPIN-09A-01D A41909 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41909	SRX593410	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPIN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASPIN-09A-01D A41909 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41909_1_lane_dupsFlagged.bam	SRR1385916	@dbgap@:reads/SRP012000/SRS635591/SRX593410/SRR1385916/SRR1385916.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPIN-09A-01D_TARGET-20-PASPIN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPIN-09A-01D	DNA	EFO	SRS635591	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPIN-09A-01D A41909 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41909	SRX593410	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPIN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASPIN-09A-01D A41909 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41909_1_lane_dupsFlagged.bam	SRR1385916	@dbgap@:reads/SRP012000/SRS635591/SRX593410/SRR1385916/SRR1385916.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPIN-09A-01D_TARGET-20-PASPIN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPIN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPIN-14A-01D	DNA	EFO	SRS637397	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPIN-14A-01D A42826 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42826	SRX597803	"Specific Capture analysis of normal sample TARGET-20-PASPIN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASPIN-14A-01D A42826 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42826_1_lane_dupsFlagged.bam	SRR1395077	@dbgap@:reads/SRP012000/SRS637397/SRX597803/SRR1395077/SRR1395077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPIN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPIN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASPIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPIN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPIN-14A-01D	DNA	EFO	SRS637397	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPIN-14A-01D A42826 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42826	SRX597803	"Specific Capture analysis of normal sample TARGET-20-PASPIN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASPIN-14A-01D A42826 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42826_1_lane_dupsFlagged.bam	SRR1395077	@dbgap@:reads/SRP012000/SRS637397/SRX597803/SRR1395077/SRR1395077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPIN-09A-01D_TARGET-20-PASPIN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPIN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPIN-14A-01D	DNA	EFO	SRS637397	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPIN-14A-01D A42826 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42826	SRX597803	"Specific Capture analysis of normal sample TARGET-20-PASPIN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASPIN-14A-01D A42826 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42826_1_lane_dupsFlagged.bam	SRR1395077	@dbgap@:reads/SRP012000/SRS637397/SRX597803/SRR1395077/SRR1395077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPIN-09A-01D_TARGET-20-PASPIN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPIX-09A-01D	DNA	EFO	SRS628297	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPIX-09A-01D A31264 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31264	SRX573356	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPIX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASPIX-09A-01D A31264 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31264_1_lane_dupsFlagged.bam	SRR1342692	@dbgap@:reads/SRP012000/SRS628297/SRX573356/SRR1342692/SRR1342692.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPIX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPIX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASPIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPIX-09A-01D	DNA	EFO	SRS628297	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPIX-09A-01D A31264 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31264	SRX573356	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPIX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASPIX-09A-01D A31264 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31264_1_lane_dupsFlagged.bam	SRR1342692	@dbgap@:reads/SRP012000/SRS628297/SRX573356/SRR1342692/SRR1342692.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPIX-09A-01D_TARGET-20-PASPIX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPIX-09A-01D	DNA	EFO	SRS628297	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPIX-09A-01D A31264 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31264	SRX573356	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPIX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASPIX-09A-01D A31264 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31264_1_lane_dupsFlagged.bam	SRR1342692	@dbgap@:reads/SRP012000/SRS628297/SRX573356/SRR1342692/SRR1342692.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPIX-09A-01D_TARGET-20-PASPIX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPIX-14A-01D	DNA	EFO	SRS637475	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPIX-14A-01D A42876 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42876	SRX597902	"Specific Capture analysis of normal sample TARGET-20-PASPIX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASPIX-14A-01D A42876 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42876_1_lane_dupsFlagged.bam	SRR1395158	@dbgap@:reads/SRP012000/SRS637475/SRX597902/SRR1395158/SRR1395158.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPIX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPIX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASPIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPIX-14A-01D	DNA	EFO	SRS637475	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPIX-14A-01D A42876 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42876	SRX597902	"Specific Capture analysis of normal sample TARGET-20-PASPIX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASPIX-14A-01D A42876 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42876_1_lane_dupsFlagged.bam	SRR1395158	@dbgap@:reads/SRP012000/SRS637475/SRX597902/SRR1395158/SRR1395158.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPIX-09A-01D_TARGET-20-PASPIX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPIX-14A-01D	DNA	EFO	SRS637475	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPIX-14A-01D A42876 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42876	SRX597902	"Specific Capture analysis of normal sample TARGET-20-PASPIX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASPIX-14A-01D A42876 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42876_1_lane_dupsFlagged.bam	SRR1395158	@dbgap@:reads/SRP012000/SRS637475/SRX597902/SRR1395158/SRR1395158.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPIX-09A-01D_TARGET-20-PASPIX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-02D	DNA	EFO	SRS628963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPKE-09A-02D A32336 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32336	SRX575020	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPKE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASPKE-09A-02D A32336 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32336_1_lane_dupsFlagged.bam	SRR1346128	@dbgap@:reads/SRP012000/SRS628963/SRX575020/SRR1346128/SRR1346128.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPKE-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPKE-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-02D	DNA	EFO	SRS628963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPKE-09A-02D A32336 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32336	SRX575020	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPKE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASPKE-09A-02D A32336 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32336_1_lane_dupsFlagged.bam	SRR1346128	@dbgap@:reads/SRP012000/SRS628963/SRX575020/SRR1346128/SRR1346128.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPKE-09A-02D_TARGET-20-PASPKE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-02D	DNA	EFO	SRS628963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPKE-09A-02D A32336 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32336	SRX575020	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPKE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASPKE-09A-02D A32336 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32336_1_lane_dupsFlagged.bam	SRR1346128	@dbgap@:reads/SRP012000/SRS628963/SRX575020/SRR1346128/SRR1346128.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPKE-09A-02D_TARGET-20-PASPKE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-14A-01D	DNA	EFO	SRS489707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPKE-14A-01D A42548 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42548	SRX593835	"Specific Capture analysis of normal sample TARGET-20-PASPKE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASPKE-14A-01D A42548 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42548_1_lane_dupsFlagged.bam	SRR1386402	@dbgap@:reads/SRP012000/SRS489707/SRX593835/SRR1386402/SRR1386402.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPKE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPKE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-14A-01D	DNA	EFO	SRS489707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPKE-14A-01D A42548 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42548	SRX593835	"Specific Capture analysis of normal sample TARGET-20-PASPKE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASPKE-14A-01D A42548 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42548_1_lane_dupsFlagged.bam	SRR1386402	@dbgap@:reads/SRP012000/SRS489707/SRX593835/SRR1386402/SRR1386402.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPKE-09A-02D_TARGET-20-PASPKE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-14A-01D	DNA	EFO	SRS489707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPKE-14A-01D A42548 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42548	SRX593835	"Specific Capture analysis of normal sample TARGET-20-PASPKE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASPKE-14A-01D A42548 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42548_1_lane_dupsFlagged.bam	SRR1386402	@dbgap@:reads/SRP012000/SRS489707/SRX593835/SRR1386402/SRR1386402.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPKE-09A-02D_TARGET-20-PASPKE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPLH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLH-09A-01D	DNA	EFO	SRS635629	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLH-09A-01D A41907 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41907	SRX593449	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPLH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASPLH-09A-01D A41907 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41907_1_lane_dupsFlagged.bam	SRR1385876	@dbgap@:reads/SRP012000/SRS635629/SRX593449/SRR1385876/SRR1385876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPLH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPLH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASPLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPLH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLH-09A-01D	DNA	EFO	SRS635629	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLH-09A-01D A41907 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41907	SRX593449	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPLH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASPLH-09A-01D A41907 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41907_1_lane_dupsFlagged.bam	SRR1385876	@dbgap@:reads/SRP012000/SRS635629/SRX593449/SRR1385876/SRR1385876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPLH-09A-01D_TARGET-20-PASPLH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPLH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLH-09A-01D	DNA	EFO	SRS635629	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLH-09A-01D A41907 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41907	SRX593449	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPLH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASPLH-09A-01D A41907 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41907_1_lane_dupsFlagged.bam	SRR1385876	@dbgap@:reads/SRP012000/SRS635629/SRX593449/SRR1385876/SRR1385876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPLH-09A-01D_TARGET-20-PASPLH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPLH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLH-14A-01D	DNA	EFO	SRS637429	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLH-14A-01D A42827 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42827	SRX597838	"Specific Capture analysis of normal sample TARGET-20-PASPLH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASPLH-14A-01D A42827 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42827_1_lane_dupsFlagged.bam	SRR1395089	@dbgap@:reads/SRP012000/SRS637429/SRX597838/SRR1395089/SRR1395089.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPLH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPLH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASPLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPLH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLH-14A-01D	DNA	EFO	SRS637429	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLH-14A-01D A42827 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42827	SRX597838	"Specific Capture analysis of normal sample TARGET-20-PASPLH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASPLH-14A-01D A42827 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42827_1_lane_dupsFlagged.bam	SRR1395089	@dbgap@:reads/SRP012000/SRS637429/SRX597838/SRR1395089/SRR1395089.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPLH-09A-01D_TARGET-20-PASPLH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPLH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLH-14A-01D	DNA	EFO	SRS637429	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLH-14A-01D A42827 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42827	SRX597838	"Specific Capture analysis of normal sample TARGET-20-PASPLH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASPLH-14A-01D A42827 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42827_1_lane_dupsFlagged.bam	SRR1395089	@dbgap@:reads/SRP012000/SRS637429/SRX597838/SRR1395089/SRR1395089.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPLH-09A-01D_TARGET-20-PASPLH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02D	DNA	EFO	SRS270787	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLU-09A-02D A31203 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31203	SRX573392	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPLU-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PASPLU-09A-02D A31203 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31203_1_lane_dupsFlagged.bam	SRR1342628	@dbgap@:reads/SRP012000/SRS270787/SRX573392/SRR1342628/SRR1342628.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPLU-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPLU-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02D	DNA	EFO	SRS270787	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLU-09A-02D A31203 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31203	SRX573392	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPLU-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PASPLU-09A-02D A31203 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31203_1_lane_dupsFlagged.bam	SRR1342628	@dbgap@:reads/SRP012000/SRS270787/SRX573392/SRR1342628/SRR1342628.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPLU-09A-02D_TARGET-20-PASPLU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02D	DNA	EFO	SRS270787	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLU-09A-02D A31203 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31203	SRX573392	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPLU-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PASPLU-09A-02D A31203 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31203_1_lane_dupsFlagged.bam	SRR1342628	@dbgap@:reads/SRP012000/SRS270787/SRX573392/SRR1342628/SRR1342628.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPLU-09A-02D_TARGET-20-PASPLU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLU-14A-01D A42869 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42869	SRX597936	"Specific Capture analysis of normal sample TARGET-20-PASPLU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASPLU-14A-01D A42869 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42869_1_lane_dupsFlagged.bam	SRR1395168	@dbgap@:reads/SRP012000/SRS270788/SRX597936/SRR1395168/SRR1395168.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPLU-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPLU-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLU-14A-01D A42869 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42869	SRX597936	"Specific Capture analysis of normal sample TARGET-20-PASPLU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASPLU-14A-01D A42869 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42869_1_lane_dupsFlagged.bam	SRR1395168	@dbgap@:reads/SRP012000/SRS270788/SRX597936/SRR1395168/SRR1395168.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPLU-09A-02D_TARGET-20-PASPLU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-14A-01D	DNA	EFO	SRS270788	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLU-14A-01D A42869 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42869	SRX597936	"Specific Capture analysis of normal sample TARGET-20-PASPLU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASPLU-14A-01D A42869 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42869_1_lane_dupsFlagged.bam	SRR1395168	@dbgap@:reads/SRP012000/SRS270788/SRX597936/SRR1395168/SRR1395168.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPLU-09A-02D_TARGET-20-PASPLU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPSV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPSV-09A-02D	DNA	EFO	SRS628908	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPSV-09A-02D A32337 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32337	SRX574964	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPSV-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASPSV-09A-02D A32337 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32337_1_lane_dupsFlagged.bam	SRR1346181	@dbgap@:reads/SRP012000/SRS628908/SRX574964/SRR1346181/SRR1346181.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPSV-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPSV-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASPSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPSV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPSV-09A-02D	DNA	EFO	SRS628908	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPSV-09A-02D A32337 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32337	SRX574964	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPSV-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASPSV-09A-02D A32337 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32337_1_lane_dupsFlagged.bam	SRR1346181	@dbgap@:reads/SRP012000/SRS628908/SRX574964/SRR1346181/SRR1346181.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPSV-09A-02D_TARGET-20-PASPSV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPSV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPSV-09A-02D	DNA	EFO	SRS628908	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPSV-09A-02D A32337 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32337	SRX574964	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPSV-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASPSV-09A-02D A32337 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32337_1_lane_dupsFlagged.bam	SRR1346181	@dbgap@:reads/SRP012000/SRS628908/SRX574964/SRR1346181/SRR1346181.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPSV-09A-02D_TARGET-20-PASPSV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPSV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPSV-14A-01D	DNA	EFO	SRS635656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPSV-14A-01D A41653 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41653	SRX593480	"Specific Capture analysis of normal sample TARGET-20-PASPSV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASPSV-14A-01D A41653 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41653_1_lane_dupsFlagged.bam	SRR1386011	@dbgap@:reads/SRP012000/SRS635656/SRX593480/SRR1386011/SRR1386011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPSV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPSV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASPSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPSV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPSV-14A-01D	DNA	EFO	SRS635656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPSV-14A-01D A41653 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41653	SRX593480	"Specific Capture analysis of normal sample TARGET-20-PASPSV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASPSV-14A-01D A41653 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41653_1_lane_dupsFlagged.bam	SRR1386011	@dbgap@:reads/SRP012000/SRS635656/SRX593480/SRR1386011/SRR1386011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPSV-09A-02D_TARGET-20-PASPSV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPSV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPSV-14A-01D	DNA	EFO	SRS635656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPSV-14A-01D A41653 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41653	SRX593480	"Specific Capture analysis of normal sample TARGET-20-PASPSV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASPSV-14A-01D A41653 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41653_1_lane_dupsFlagged.bam	SRR1386011	@dbgap@:reads/SRP012000/SRS635656/SRX593480/SRR1386011/SRR1386011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPSV-09A-02D_TARGET-20-PASPSV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01D	DNA	EFO	SRS301145	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTM-09A-01D A31265 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31265	SRX573370	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPTM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASPTM-09A-01D A31265 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31265_1_lane_dupsFlagged.bam	SRR1342668	@dbgap@:reads/SRP012000/SRS301145/SRX573370/SRR1342668/SRR1342668.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPTM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPTM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01D	DNA	EFO	SRS301145	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTM-09A-01D A31265 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31265	SRX573370	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPTM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASPTM-09A-01D A31265 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31265_1_lane_dupsFlagged.bam	SRR1342668	@dbgap@:reads/SRP012000/SRS301145/SRX573370/SRR1342668/SRR1342668.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPTM-09A-01D_TARGET-20-PASPTM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01D	DNA	EFO	SRS301145	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTM-09A-01D A31265 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31265	SRX573370	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPTM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASPTM-09A-01D A31265 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31265_1_lane_dupsFlagged.bam	SRR1342668	@dbgap@:reads/SRP012000/SRS301145/SRX573370/SRR1342668/SRR1342668.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPTM-09A-01D_TARGET-20-PASPTM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-14A-01D	DNA	EFO	SRS635901	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTM-14A-01D A42549 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42549	SRX593861	"Specific Capture analysis of normal sample TARGET-20-PASPTM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASPTM-14A-01D A42549 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42549_1_lane_dupsFlagged.bam	SRR1386324	@dbgap@:reads/SRP012000/SRS635901/SRX593861/SRR1386324/SRR1386324.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPTM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPTM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-14A-01D	DNA	EFO	SRS635901	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTM-14A-01D A42549 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42549	SRX593861	"Specific Capture analysis of normal sample TARGET-20-PASPTM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASPTM-14A-01D A42549 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42549_1_lane_dupsFlagged.bam	SRR1386324	@dbgap@:reads/SRP012000/SRS635901/SRX593861/SRR1386324/SRR1386324.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPTM-09A-01D_TARGET-20-PASPTM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-14A-01D	DNA	EFO	SRS635901	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTM-14A-01D A42549 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42549	SRX593861	"Specific Capture analysis of normal sample TARGET-20-PASPTM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASPTM-14A-01D A42549 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42549_1_lane_dupsFlagged.bam	SRR1386324	@dbgap@:reads/SRP012000/SRS635901/SRX593861/SRR1386324/SRR1386324.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPTM-09A-01D_TARGET-20-PASPTM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTW-09A-02D	DNA	EFO	SRS628903	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTW-09A-02D A32338 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32338	SRX574959	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPTW-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASPTW-09A-02D A32338 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32338_1_lane_dupsFlagged.bam	SRR1346209	@dbgap@:reads/SRP012000/SRS628903/SRX574959/SRR1346209/SRR1346209.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPTW-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPTW-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASPTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTW-09A-02D	DNA	EFO	SRS628903	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTW-09A-02D A32338 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32338	SRX574959	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPTW-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASPTW-09A-02D A32338 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32338_1_lane_dupsFlagged.bam	SRR1346209	@dbgap@:reads/SRP012000/SRS628903/SRX574959/SRR1346209/SRR1346209.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPTW-09A-02D_TARGET-20-PASPTW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTW-09A-02D	DNA	EFO	SRS628903	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTW-09A-02D A32338 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32338	SRX574959	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPTW-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASPTW-09A-02D A32338 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32338_1_lane_dupsFlagged.bam	SRR1346209	@dbgap@:reads/SRP012000/SRS628903/SRX574959/SRR1346209/SRR1346209.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPTW-09A-02D_TARGET-20-PASPTW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTW-14A-01D	DNA	EFO	SRS637492	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTW-14A-01D A42870 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42870	SRX597923	"Specific Capture analysis of normal sample TARGET-20-PASPTW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASPTW-14A-01D A42870 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42870_1_lane_dupsFlagged.bam	SRR1395140	@dbgap@:reads/SRP012000/SRS637492/SRX597923/SRR1395140/SRR1395140.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPTW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPTW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASPTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTW-14A-01D	DNA	EFO	SRS637492	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTW-14A-01D A42870 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42870	SRX597923	"Specific Capture analysis of normal sample TARGET-20-PASPTW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASPTW-14A-01D A42870 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42870_1_lane_dupsFlagged.bam	SRR1395140	@dbgap@:reads/SRP012000/SRS637492/SRX597923/SRR1395140/SRR1395140.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPTW-09A-02D_TARGET-20-PASPTW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTW-14A-01D	DNA	EFO	SRS637492	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTW-14A-01D A42870 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42870	SRX597923	"Specific Capture analysis of normal sample TARGET-20-PASPTW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASPTW-14A-01D A42870 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42870_1_lane_dupsFlagged.bam	SRR1395140	@dbgap@:reads/SRP012000/SRS637492/SRX597923/SRR1395140/SRR1395140.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPTW-09A-02D_TARGET-20-PASPTW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPWC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPWC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWC-03A-02D	DNA	EFO	SRS628336	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWC-03A-02D A31218 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31218	SRX573416	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPWC-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASPWC-03A-02D A31218 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31218_1_lane_dupsFlagged.bam	SRR1342677	@dbgap@:reads/SRP012000/SRS628336/SRX573416/SRR1342677/SRR1342677.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPWC-03A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPWC-03A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASPWC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPWC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWC-03A-02D	DNA	EFO	SRS628336	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWC-03A-02D A31218 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31218	SRX573416	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPWC-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASPWC-03A-02D A31218 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31218_1_lane_dupsFlagged.bam	SRR1342677	@dbgap@:reads/SRP012000/SRS628336/SRX573416/SRR1342677/SRR1342677.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPWC-03A-02D_TARGET-20-PASPWC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPWC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPWC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWC-03A-02D	DNA	EFO	SRS628336	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWC-03A-02D A31218 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31218	SRX573416	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPWC-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASPWC-03A-02D A31218 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31218_1_lane_dupsFlagged.bam	SRR1342677	@dbgap@:reads/SRP012000/SRS628336/SRX573416/SRR1342677/SRR1342677.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPWC-03A-02D_TARGET-20-PASPWC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPWC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPWC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWC-14A-01D	DNA	EFO	SRS635642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWC-14A-01D A41652 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41652	SRX593463	"Specific Capture analysis of normal sample TARGET-20-PASPWC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASPWC-14A-01D A41652 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41652_1_lane_dupsFlagged.bam	SRR1386017	@dbgap@:reads/SRP012000/SRS635642/SRX593463/SRR1386017/SRR1386017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPWC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPWC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASPWC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPWC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWC-14A-01D	DNA	EFO	SRS635642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWC-14A-01D A41652 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41652	SRX593463	"Specific Capture analysis of normal sample TARGET-20-PASPWC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASPWC-14A-01D A41652 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41652_1_lane_dupsFlagged.bam	SRR1386017	@dbgap@:reads/SRP012000/SRS635642/SRX593463/SRR1386017/SRR1386017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPWC-03A-02D_TARGET-20-PASPWC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPWC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPWC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWC-14A-01D	DNA	EFO	SRS635642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWC-14A-01D A41652 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41652	SRX593463	"Specific Capture analysis of normal sample TARGET-20-PASPWC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASPWC-14A-01D A41652 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41652_1_lane_dupsFlagged.bam	SRR1386017	@dbgap@:reads/SRP012000/SRS635642/SRX593463/SRR1386017/SRR1386017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPWC-03A-02D_TARGET-20-PASPWC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPWZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWZ-03A-01D	DNA	EFO	SRS628327	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWZ-03A-01D A31266 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31266	SRX573407	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPWZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASPWZ-03A-01D A31266 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31266_1_lane_dupsFlagged.bam	SRR1342657	@dbgap@:reads/SRP012000/SRS628327/SRX573407/SRR1342657/SRR1342657.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPWZ-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPWZ-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASPWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPWZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWZ-03A-01D	DNA	EFO	SRS628327	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWZ-03A-01D A31266 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31266	SRX573407	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPWZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASPWZ-03A-01D A31266 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31266_1_lane_dupsFlagged.bam	SRR1342657	@dbgap@:reads/SRP012000/SRS628327/SRX573407/SRR1342657/SRR1342657.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPWZ-03A-01D_TARGET-20-PASPWZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPWZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWZ-03A-01D	DNA	EFO	SRS628327	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWZ-03A-01D A31266 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31266	SRX573407	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPWZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASPWZ-03A-01D A31266 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31266_1_lane_dupsFlagged.bam	SRR1342657	@dbgap@:reads/SRP012000/SRS628327/SRX573407/SRR1342657/SRR1342657.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPWZ-03A-01D_TARGET-20-PASPWZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPWZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWZ-04A-01D	DNA	EFO	SRS637312	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWZ-04A-01D A42224 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42224	SRX597678	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPWZ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASPWZ-04A-01D A42224 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42224_1_lane_dupsFlagged.bam	SRR1394985	@dbgap@:reads/SRP012000/SRS637312/SRX597678/SRR1394985/SRR1394985.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPWZ-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPWZ-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASPWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPWZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWZ-04A-01D	DNA	EFO	SRS637312	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWZ-04A-01D A42224 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42224	SRX597678	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPWZ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASPWZ-04A-01D A42224 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42224_1_lane_dupsFlagged.bam	SRR1394985	@dbgap@:reads/SRP012000/SRS637312/SRX597678/SRR1394985/SRR1394985.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPWZ-04A-01D_TARGET-20-PASPWZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPWZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWZ-04A-01D	DNA	EFO	SRS637312	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWZ-04A-01D A42224 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42224	SRX597678	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPWZ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASPWZ-04A-01D A42224 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42224_1_lane_dupsFlagged.bam	SRR1394985	@dbgap@:reads/SRP012000/SRS637312/SRX597678/SRR1394985/SRR1394985.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPWZ-04A-01D_TARGET-20-PASPWZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPWZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWZ-14A-01D	DNA	EFO	SRS637450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWZ-14A-01D A42942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42942	SRX597867	"Specific Capture analysis of normal sample TARGET-20-PASPWZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASPWZ-14A-01D A42942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42942_1_lane_dupsFlagged.bam	SRR1395225	@dbgap@:reads/SRP012000/SRS637450/SRX597867/SRR1395225/SRR1395225.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPWZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPWZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASPWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPWZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWZ-14A-01D	DNA	EFO	SRS637450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWZ-14A-01D A42942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42942	SRX597867	"Specific Capture analysis of normal sample TARGET-20-PASPWZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASPWZ-14A-01D A42942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42942_1_lane_dupsFlagged.bam	SRR1395225	@dbgap@:reads/SRP012000/SRS637450/SRX597867/SRR1395225/SRR1395225.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPWZ-03A-01D_TARGET-20-PASPWZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPWZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWZ-14A-01D	DNA	EFO	SRS637450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWZ-14A-01D A42942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42942	SRX597867	"Specific Capture analysis of normal sample TARGET-20-PASPWZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASPWZ-14A-01D A42942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42942_1_lane_dupsFlagged.bam	SRR1395225	@dbgap@:reads/SRP012000/SRS637450/SRX597867/SRR1395225/SRR1395225.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPWZ-03A-01D_TARGET-20-PASPWZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPWZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWZ-14A-01D	DNA	EFO	SRS637450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWZ-14A-01D A42942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42942	SRX597867	"Specific Capture analysis of normal sample TARGET-20-PASPWZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASPWZ-14A-01D A42942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42942_1_lane_dupsFlagged.bam	SRR1395225	@dbgap@:reads/SRP012000/SRS637450/SRX597867/SRR1395225/SRR1395225.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPWZ-04A-01D_TARGET-20-PASPWZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPWZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWZ-14A-01D	DNA	EFO	SRS637450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWZ-14A-01D A42942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42942	SRX597867	"Specific Capture analysis of normal sample TARGET-20-PASPWZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASPWZ-14A-01D A42942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42942_1_lane_dupsFlagged.bam	SRR1395225	@dbgap@:reads/SRP012000/SRS637450/SRX597867/SRR1395225/SRR1395225.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPWZ-04A-01D_TARGET-20-PASPWZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPXN-09A-01D	DNA	EFO	SRS635602	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPXN-09A-01D A41930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41930	SRX593422	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPXN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASPXN-09A-01D A41930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41930_1_lane_dupsFlagged.bam	SRR1385923	@dbgap@:reads/SRP012000/SRS635602/SRX593422/SRR1385923/SRR1385923.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPXN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPXN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASPXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPXN-09A-01D	DNA	EFO	SRS635602	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPXN-09A-01D A41930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41930	SRX593422	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPXN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASPXN-09A-01D A41930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41930_1_lane_dupsFlagged.bam	SRR1385923	@dbgap@:reads/SRP012000/SRS635602/SRX593422/SRR1385923/SRR1385923.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPXN-09A-01D_TARGET-20-PASPXN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPXN-09A-01D	DNA	EFO	SRS635602	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPXN-09A-01D A41930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41930	SRX593422	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPXN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASPXN-09A-01D A41930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41930_1_lane_dupsFlagged.bam	SRR1385923	@dbgap@:reads/SRP012000/SRS635602/SRX593422/SRR1385923/SRR1385923.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPXN-09A-01D_TARGET-20-PASPXN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPXN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPXN-14A-01D	DNA	EFO	SRS637383	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPXN-14A-01D A42828 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42828	SRX597789	"Specific Capture analysis of normal sample TARGET-20-PASPXN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASPXN-14A-01D A42828 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42828_1_lane_dupsFlagged.bam	SRR1395045	@dbgap@:reads/SRP012000/SRS637383/SRX597789/SRR1395045/SRR1395045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPXN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPXN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASPXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPXN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPXN-14A-01D	DNA	EFO	SRS637383	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPXN-14A-01D A42828 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42828	SRX597789	"Specific Capture analysis of normal sample TARGET-20-PASPXN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASPXN-14A-01D A42828 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42828_1_lane_dupsFlagged.bam	SRR1395045	@dbgap@:reads/SRP012000/SRS637383/SRX597789/SRR1395045/SRR1395045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPXN-09A-01D_TARGET-20-PASPXN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPXN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPXN-14A-01D	DNA	EFO	SRS637383	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPXN-14A-01D A42828 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42828	SRX597789	"Specific Capture analysis of normal sample TARGET-20-PASPXN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASPXN-14A-01D A42828 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42828_1_lane_dupsFlagged.bam	SRR1395045	@dbgap@:reads/SRP012000/SRS637383/SRX597789/SRR1395045/SRR1395045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPXN-09A-01D_TARGET-20-PASPXN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPYR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPYR-04A-01D	DNA	EFO	SRS637335	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPYR-04A-01D A42189 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42189	SRX597722	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPYR-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASPYR-04A-01D A42189 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42189_1_lane_dupsFlagged.bam	SRR1394995	@dbgap@:reads/SRP012000/SRS637335/SRX597722/SRR1394995/SRR1394995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPYR-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPYR-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASPYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPYR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPYR-04A-01D	DNA	EFO	SRS637335	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPYR-04A-01D A42189 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42189	SRX597722	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPYR-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASPYR-04A-01D A42189 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42189_1_lane_dupsFlagged.bam	SRR1394995	@dbgap@:reads/SRP012000/SRS637335/SRX597722/SRR1394995/SRR1394995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPYR-04A-01D_TARGET-20-PASPYR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPYR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPYR-04A-01D	DNA	EFO	SRS637335	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPYR-04A-01D A42189 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42189	SRX597722	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPYR-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASPYR-04A-01D A42189 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42189_1_lane_dupsFlagged.bam	SRR1394995	@dbgap@:reads/SRP012000/SRS637335/SRX597722/SRR1394995/SRR1394995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPYR-04A-01D_TARGET-20-PASPYR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPYR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPYR-09A-01D	DNA	EFO	SRS635554	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPYR-09A-01D A41809 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41809	SRX593357	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPYR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASPYR-09A-01D A41809 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41809_1_lane_dupsFlagged.bam	SRR1385823	@dbgap@:reads/SRP012000/SRS635554/SRX593357/SRR1385823/SRR1385823.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPYR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPYR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASPYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPYR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPYR-09A-01D	DNA	EFO	SRS635554	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPYR-09A-01D A41809 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41809	SRX593357	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPYR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASPYR-09A-01D A41809 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41809_1_lane_dupsFlagged.bam	SRR1385823	@dbgap@:reads/SRP012000/SRS635554/SRX593357/SRR1385823/SRR1385823.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPYR-09A-01D_TARGET-20-PASPYR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPYR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPYR-09A-01D	DNA	EFO	SRS635554	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPYR-09A-01D A41809 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41809	SRX593357	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASPYR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASPYR-09A-01D A41809 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41809_1_lane_dupsFlagged.bam	SRR1385823	@dbgap@:reads/SRP012000/SRS635554/SRX593357/SRR1385823/SRR1385823.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPYR-09A-01D_TARGET-20-PASPYR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPYR-14A-01D	DNA	EFO	SRS635646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPYR-14A-01D A41654 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41654	SRX593470	"Specific Capture analysis of normal sample TARGET-20-PASPYR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASPYR-14A-01D A41654 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41654_1_lane_dupsFlagged.bam	SRR1385984	@dbgap@:reads/SRP012000/SRS635646/SRX593470/SRR1385984/SRR1385984.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASPYR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASPYR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASPYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPYR-14A-01D	DNA	EFO	SRS635646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPYR-14A-01D A41654 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41654	SRX593470	"Specific Capture analysis of normal sample TARGET-20-PASPYR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASPYR-14A-01D A41654 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41654_1_lane_dupsFlagged.bam	SRR1385984	@dbgap@:reads/SRP012000/SRS635646/SRX593470/SRR1385984/SRR1385984.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPYR-04A-01D_TARGET-20-PASPYR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPYR-14A-01D	DNA	EFO	SRS635646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPYR-14A-01D A41654 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41654	SRX593470	"Specific Capture analysis of normal sample TARGET-20-PASPYR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASPYR-14A-01D A41654 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41654_1_lane_dupsFlagged.bam	SRR1385984	@dbgap@:reads/SRP012000/SRS635646/SRX593470/SRR1385984/SRR1385984.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPYR-04A-01D_TARGET-20-PASPYR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASPYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPYR-14A-01D	DNA	EFO	SRS635646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPYR-14A-01D A41654 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41654	SRX593470	"Specific Capture analysis of normal sample TARGET-20-PASPYR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASPYR-14A-01D A41654 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41654_1_lane_dupsFlagged.bam	SRR1385984	@dbgap@:reads/SRP012000/SRS635646/SRX593470/SRR1385984/SRR1385984.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPYR-09A-01D_TARGET-20-PASPYR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASPYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASPYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPYR-14A-01D	DNA	EFO	SRS635646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPYR-14A-01D A41654 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41654	SRX593470	"Specific Capture analysis of normal sample TARGET-20-PASPYR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASPYR-14A-01D A41654 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41654_1_lane_dupsFlagged.bam	SRR1385984	@dbgap@:reads/SRP012000/SRS635646/SRX593470/SRR1385984/SRR1385984.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASPYR-09A-01D_TARGET-20-PASPYR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRAT-09A-01D	DNA	EFO	SRS629178	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRAT-09A-01D A33357 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33357	SRX575232	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRAT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASRAT-09A-01D A33357 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33357_1_lane_dupsFlagged.bam	SRR1346489	@dbgap@:reads/SRP012000/SRS629178/SRX575232/SRR1346489/SRR1346489.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRAT-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRAT-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASRAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRAT-09A-01D	DNA	EFO	SRS629178	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRAT-09A-01D A33357 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33357	SRX575232	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRAT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASRAT-09A-01D A33357 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33357_1_lane_dupsFlagged.bam	SRR1346489	@dbgap@:reads/SRP012000/SRS629178/SRX575232/SRR1346489/SRR1346489.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRAT-09A-01D_TARGET-20-PASRAT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRAT-09A-01D	DNA	EFO	SRS629178	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRAT-09A-01D A33357 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33357	SRX575232	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRAT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASRAT-09A-01D A33357 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33357_1_lane_dupsFlagged.bam	SRR1346489	@dbgap@:reads/SRP012000/SRS629178/SRX575232/SRR1346489/SRR1346489.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRAT-09A-01D_TARGET-20-PASRAT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRAT-14A-01D	DNA	EFO	SRS637361	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRAT-14A-01D A42829 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42829	SRX597766	"Specific Capture analysis of normal sample TARGET-20-PASRAT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASRAT-14A-01D A42829 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42829_1_lane_dupsFlagged.bam	SRR1395052	@dbgap@:reads/SRP012000/SRS637361/SRX597766/SRR1395052/SRR1395052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRAT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRAT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASRAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRAT-14A-01D	DNA	EFO	SRS637361	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRAT-14A-01D A42829 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42829	SRX597766	"Specific Capture analysis of normal sample TARGET-20-PASRAT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASRAT-14A-01D A42829 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42829_1_lane_dupsFlagged.bam	SRR1395052	@dbgap@:reads/SRP012000/SRS637361/SRX597766/SRR1395052/SRR1395052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRAT-09A-01D_TARGET-20-PASRAT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRAT-14A-01D	DNA	EFO	SRS637361	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRAT-14A-01D A42829 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42829	SRX597766	"Specific Capture analysis of normal sample TARGET-20-PASRAT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASRAT-14A-01D A42829 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42829_1_lane_dupsFlagged.bam	SRR1395052	@dbgap@:reads/SRP012000/SRS637361/SRX597766/SRR1395052/SRR1395052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRAT-09A-01D_TARGET-20-PASRAT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRCW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRCW-03A-01D	DNA	EFO	SRS635625	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRCW-03A-01D A41920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41920	SRX593448	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRCW-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASRCW-03A-01D A41920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41920_1_lane_dupsFlagged.bam	SRR1385878	@dbgap@:reads/SRP012000/SRS635625/SRX593448/SRR1385878/SRR1385878.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRCW-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRCW-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASRCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRCW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRCW-03A-01D	DNA	EFO	SRS635625	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRCW-03A-01D A41920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41920	SRX593448	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRCW-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASRCW-03A-01D A41920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41920_1_lane_dupsFlagged.bam	SRR1385878	@dbgap@:reads/SRP012000/SRS635625/SRX593448/SRR1385878/SRR1385878.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRCW-03A-01D_TARGET-20-PASRCW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRCW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRCW-03A-01D	DNA	EFO	SRS635625	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRCW-03A-01D A41920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41920	SRX593448	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRCW-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASRCW-03A-01D A41920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41920_1_lane_dupsFlagged.bam	SRR1385878	@dbgap@:reads/SRP012000/SRS635625/SRX593448/SRR1385878/SRR1385878.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRCW-03A-01D_TARGET-20-PASRCW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRCW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRCW-14A-01D	DNA	EFO	SRS637387	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRCW-14A-01D A42830 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42830	SRX597795	"Specific Capture analysis of normal sample TARGET-20-PASRCW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASRCW-14A-01D A42830 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42830_1_lane_dupsFlagged.bam	SRR1395116	@dbgap@:reads/SRP012000/SRS637387/SRX597795/SRR1395116/SRR1395116.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRCW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRCW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASRCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRCW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRCW-14A-01D	DNA	EFO	SRS637387	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRCW-14A-01D A42830 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42830	SRX597795	"Specific Capture analysis of normal sample TARGET-20-PASRCW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASRCW-14A-01D A42830 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42830_1_lane_dupsFlagged.bam	SRR1395116	@dbgap@:reads/SRP012000/SRS637387/SRX597795/SRR1395116/SRR1395116.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRCW-03A-01D_TARGET-20-PASRCW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRCW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRCW-14A-01D	DNA	EFO	SRS637387	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRCW-14A-01D A42830 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42830	SRX597795	"Specific Capture analysis of normal sample TARGET-20-PASRCW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASRCW-14A-01D A42830 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42830_1_lane_dupsFlagged.bam	SRR1395116	@dbgap@:reads/SRP012000/SRS637387/SRX597795/SRR1395116/SRR1395116.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRCW-03A-01D_TARGET-20-PASRCW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASREH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASREH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASREH-09A-02D	DNA	EFO	SRS628944	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASREH-09A-02D A32339 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32339	SRX575000	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASREH-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASREH-09A-02D A32339 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32339_1_lane_dupsFlagged.bam	SRR1346186	@dbgap@:reads/SRP012000/SRS628944/SRX575000/SRR1346186/SRR1346186.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASREH-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASREH-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASREH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASREH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASREH-09A-02D	DNA	EFO	SRS628944	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASREH-09A-02D A32339 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32339	SRX575000	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASREH-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASREH-09A-02D A32339 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32339_1_lane_dupsFlagged.bam	SRR1346186	@dbgap@:reads/SRP012000/SRS628944/SRX575000/SRR1346186/SRR1346186.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASREH-09A-02D_TARGET-20-PASREH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASREH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASREH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASREH-09A-02D	DNA	EFO	SRS628944	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASREH-09A-02D A32339 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32339	SRX575000	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASREH-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASREH-09A-02D A32339 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32339_1_lane_dupsFlagged.bam	SRR1346186	@dbgap@:reads/SRP012000/SRS628944/SRX575000/SRR1346186/SRR1346186.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASREH-09A-02D_TARGET-20-PASREH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASREH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASREH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASREH-14A-01D	DNA	EFO	SRS637500	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASREH-14A-01D A42871 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42871	SRX597932	"Specific Capture analysis of normal sample TARGET-20-PASREH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASREH-14A-01D A42871 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42871_1_lane_dupsFlagged.bam	SRR1395169	@dbgap@:reads/SRP012000/SRS637500/SRX597932/SRR1395169/SRR1395169.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASREH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASREH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASREH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASREH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASREH-14A-01D	DNA	EFO	SRS637500	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASREH-14A-01D A42871 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42871	SRX597932	"Specific Capture analysis of normal sample TARGET-20-PASREH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASREH-14A-01D A42871 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42871_1_lane_dupsFlagged.bam	SRR1395169	@dbgap@:reads/SRP012000/SRS637500/SRX597932/SRR1395169/SRR1395169.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASREH-09A-02D_TARGET-20-PASREH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASREH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASREH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASREH-14A-01D	DNA	EFO	SRS637500	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASREH-14A-01D A42871 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42871	SRX597932	"Specific Capture analysis of normal sample TARGET-20-PASREH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASREH-14A-01D A42871 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42871_1_lane_dupsFlagged.bam	SRR1395169	@dbgap@:reads/SRP012000/SRS637500/SRX597932/SRR1395169/SRR1395169.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASREH-09A-02D_TARGET-20-PASREH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRIN-09A-01D	DNA	EFO	SRS635592	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRIN-09A-01D A41938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41938	SRX593412	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRIN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASRIN-09A-01D A41938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41938_1_lane_dupsFlagged.bam	SRR1385920	@dbgap@:reads/SRP012000/SRS635592/SRX593412/SRR1385920/SRR1385920.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRIN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRIN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASRIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRIN-09A-01D	DNA	EFO	SRS635592	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRIN-09A-01D A41938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41938	SRX593412	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRIN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASRIN-09A-01D A41938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41938_1_lane_dupsFlagged.bam	SRR1385920	@dbgap@:reads/SRP012000/SRS635592/SRX593412/SRR1385920/SRR1385920.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRIN-09A-01D_TARGET-20-PASRIN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRIN-09A-01D	DNA	EFO	SRS635592	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRIN-09A-01D A41938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41938	SRX593412	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRIN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASRIN-09A-01D A41938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41938_1_lane_dupsFlagged.bam	SRR1385920	@dbgap@:reads/SRP012000/SRS635592/SRX593412/SRR1385920/SRR1385920.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRIN-09A-01D_TARGET-20-PASRIN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRIN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRIN-14A-01D	DNA	EFO	SRS637488	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRIN-14A-01D A42878 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42878	SRX597918	"Specific Capture analysis of normal sample TARGET-20-PASRIN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASRIN-14A-01D A42878 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42878_1_lane_dupsFlagged.bam	SRR1395216	@dbgap@:reads/SRP012000/SRS637488/SRX597918/SRR1395216/SRR1395216.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRIN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRIN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASRIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRIN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRIN-14A-01D	DNA	EFO	SRS637488	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRIN-14A-01D A42878 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42878	SRX597918	"Specific Capture analysis of normal sample TARGET-20-PASRIN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASRIN-14A-01D A42878 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42878_1_lane_dupsFlagged.bam	SRR1395216	@dbgap@:reads/SRP012000/SRS637488/SRX597918/SRR1395216/SRR1395216.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRIN-09A-01D_TARGET-20-PASRIN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRIN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRIN-14A-01D	DNA	EFO	SRS637488	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRIN-14A-01D A42878 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42878	SRX597918	"Specific Capture analysis of normal sample TARGET-20-PASRIN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASRIN-14A-01D A42878 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42878_1_lane_dupsFlagged.bam	SRR1395216	@dbgap@:reads/SRP012000/SRS637488/SRX597918/SRR1395216/SRR1395216.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRIN-09A-01D_TARGET-20-PASRIN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRJL-09A-01D	DNA	EFO	SRS628907	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRJL-09A-01D A32279 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32279	SRX574963	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRJL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASRJL-09A-01D A32279 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32279_1_lane_dupsFlagged.bam	SRR1346125	@dbgap@:reads/SRP012000/SRS628907/SRX574963/SRR1346125/SRR1346125.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRJL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRJL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASRJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRJL-09A-01D	DNA	EFO	SRS628907	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRJL-09A-01D A32279 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32279	SRX574963	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRJL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASRJL-09A-01D A32279 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32279_1_lane_dupsFlagged.bam	SRR1346125	@dbgap@:reads/SRP012000/SRS628907/SRX574963/SRR1346125/SRR1346125.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRJL-09A-01D_TARGET-20-PASRJL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRJL-09A-01D	DNA	EFO	SRS628907	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRJL-09A-01D A32279 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32279	SRX574963	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRJL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASRJL-09A-01D A32279 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32279_1_lane_dupsFlagged.bam	SRR1346125	@dbgap@:reads/SRP012000/SRS628907/SRX574963/SRR1346125/SRR1346125.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRJL-09A-01D_TARGET-20-PASRJL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRJL-14A-01D	DNA	EFO	SRS635738	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRJL-14A-01D A42330 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42330	SRX593568	"Specific Capture analysis of normal sample TARGET-20-PASRJL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASRJL-14A-01D A42330 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42330_1_lane_dupsFlagged.bam	SRR1386020	@dbgap@:reads/SRP012000/SRS635738/SRX593568/SRR1386020/SRR1386020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRJL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRJL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASRJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRJL-14A-01D	DNA	EFO	SRS635738	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRJL-14A-01D A42330 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42330	SRX593568	"Specific Capture analysis of normal sample TARGET-20-PASRJL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASRJL-14A-01D A42330 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42330_1_lane_dupsFlagged.bam	SRR1386020	@dbgap@:reads/SRP012000/SRS635738/SRX593568/SRR1386020/SRR1386020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRJL-09A-01D_TARGET-20-PASRJL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRJL-14A-01D	DNA	EFO	SRS635738	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRJL-14A-01D A42330 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42330	SRX593568	"Specific Capture analysis of normal sample TARGET-20-PASRJL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASRJL-14A-01D A42330 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42330_1_lane_dupsFlagged.bam	SRR1386020	@dbgap@:reads/SRP012000/SRS635738/SRX593568/SRR1386020/SRR1386020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRJL-09A-01D_TARGET-20-PASRJL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-09A-02D	DNA	EFO	SRS628943	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRLS-09A-02D A32280 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32280	SRX574999	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRLS-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASRLS-09A-02D A32280 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32280_1_lane_dupsFlagged.bam	SRR1346193	@dbgap@:reads/SRP012000/SRS628943/SRX574999/SRR1346193/SRR1346193.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRLS-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRLS-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-09A-02D	DNA	EFO	SRS628943	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRLS-09A-02D A32280 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32280	SRX574999	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRLS-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASRLS-09A-02D A32280 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32280_1_lane_dupsFlagged.bam	SRR1346193	@dbgap@:reads/SRP012000/SRS628943/SRX574999/SRR1346193/SRR1346193.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRLS-09A-02D_TARGET-20-PASRLS-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-09A-02D	DNA	EFO	SRS628943	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRLS-09A-02D A32280 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32280	SRX574999	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRLS-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASRLS-09A-02D A32280 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32280_1_lane_dupsFlagged.bam	SRR1346193	@dbgap@:reads/SRP012000/SRS628943/SRX574999/SRR1346193/SRR1346193.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRLS-09A-02D_TARGET-20-PASRLS-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-14A-02D	DNA	EFO	SRS637372	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRLS-14A-02D A42859 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42859	SRX597777	"Specific Capture analysis of normal sample TARGET-20-PASRLS-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASRLS-14A-02D A42859 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42859_1_lane_dupsFlagged.bam	SRR1395106	@dbgap@:reads/SRP012000/SRS637372/SRX597777/SRR1395106/SRR1395106.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRLS-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRLS-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-14A-02D	DNA	EFO	SRS637372	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRLS-14A-02D A42859 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42859	SRX597777	"Specific Capture analysis of normal sample TARGET-20-PASRLS-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASRLS-14A-02D A42859 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42859_1_lane_dupsFlagged.bam	SRR1395106	@dbgap@:reads/SRP012000/SRS637372/SRX597777/SRR1395106/SRR1395106.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRLS-09A-02D_TARGET-20-PASRLS-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRLS-14A-02D	DNA	EFO	SRS637372	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRLS-14A-02D A42859 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42859	SRX597777	"Specific Capture analysis of normal sample TARGET-20-PASRLS-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASRLS-14A-02D A42859 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42859_1_lane_dupsFlagged.bam	SRR1395106	@dbgap@:reads/SRP012000/SRS637372/SRX597777/SRR1395106/SRR1395106.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRLS-09A-02D_TARGET-20-PASRLS-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRRB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRRB-03A-02D	DNA	EFO	SRS628967	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRRB-03A-02D A32340 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32340	SRX575023	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRRB-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASRRB-03A-02D A32340 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32340_1_lane_dupsFlagged.bam	SRR1346178	@dbgap@:reads/SRP012000/SRS628967/SRX575023/SRR1346178/SRR1346178.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRRB-03A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRRB-03A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASRRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRRB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRRB-03A-02D	DNA	EFO	SRS628967	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRRB-03A-02D A32340 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32340	SRX575023	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRRB-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASRRB-03A-02D A32340 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32340_1_lane_dupsFlagged.bam	SRR1346178	@dbgap@:reads/SRP012000/SRS628967/SRX575023/SRR1346178/SRR1346178.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRRB-03A-02D_TARGET-20-PASRRB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRRB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRRB-03A-02D	DNA	EFO	SRS628967	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRRB-03A-02D A32340 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32340	SRX575023	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRRB-03A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASRRB-03A-02D A32340 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32340_1_lane_dupsFlagged.bam	SRR1346178	@dbgap@:reads/SRP012000/SRS628967/SRX575023/SRR1346178/SRR1346178.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRRB-03A-02D_TARGET-20-PASRRB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRRB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRRB-14A-01D	DNA	EFO	SRS636000	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRRB-14A-01D A42569 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42569	SRX593969	"Specific Capture analysis of normal sample TARGET-20-PASRRB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASRRB-14A-01D A42569 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42569_1_lane_dupsFlagged.bam	SRR1386499	@dbgap@:reads/SRP012000/SRS636000/SRX593969/SRR1386499/SRR1386499.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRRB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRRB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASRRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRRB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRRB-14A-01D	DNA	EFO	SRS636000	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRRB-14A-01D A42569 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42569	SRX593969	"Specific Capture analysis of normal sample TARGET-20-PASRRB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASRRB-14A-01D A42569 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42569_1_lane_dupsFlagged.bam	SRR1386499	@dbgap@:reads/SRP012000/SRS636000/SRX593969/SRR1386499/SRR1386499.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRRB-03A-02D_TARGET-20-PASRRB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRRB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRRB-14A-01D	DNA	EFO	SRS636000	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRRB-14A-01D A42569 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42569	SRX593969	"Specific Capture analysis of normal sample TARGET-20-PASRRB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASRRB-14A-01D A42569 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42569_1_lane_dupsFlagged.bam	SRR1386499	@dbgap@:reads/SRP012000/SRS636000/SRX593969/SRR1386499/SRR1386499.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRRB-03A-02D_TARGET-20-PASRRB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRRL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRRL-09A-01D	DNA	EFO	SRS629165	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRRL-09A-01D A33353 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33353	SRX575222	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRRL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-20-PASRRL-09A-01D A33353 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33353_1_lane_dupsFlagged.bam	SRR1346484	@dbgap@:reads/SRP012000/SRS629165/SRX575222/SRR1346484/SRR1346484.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRRL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRRL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASRSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRSS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRSS-09A-01D	DNA	EFO	SRS635461	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRSS-09A-01D A41718 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41718	SRX593183	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRSS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASRSS-09A-01D A41718 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41718_1_lane_dupsFlagged.bam	SRR1385639	@dbgap@:reads/SRP012000/SRS635461/SRX593183/SRR1385639/SRR1385639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRSS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRSS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASRSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRSS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRSS-09A-01D	DNA	EFO	SRS635461	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRSS-09A-01D A41718 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41718	SRX593183	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRSS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASRSS-09A-01D A41718 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41718_1_lane_dupsFlagged.bam	SRR1385639	@dbgap@:reads/SRP012000/SRS635461/SRX593183/SRR1385639/SRR1385639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRSS-09A-01D_TARGET-20-PASRSS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRSS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRSS-09A-01D	DNA	EFO	SRS635461	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRSS-09A-01D A41718 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41718	SRX593183	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRSS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PASRSS-09A-01D A41718 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41718_1_lane_dupsFlagged.bam	SRR1385639	@dbgap@:reads/SRP012000/SRS635461/SRX593183/SRR1385639/SRR1385639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRSS-09A-01D_TARGET-20-PASRSS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRSS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRSS-14A-01D	DNA	EFO	SRS637508	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRSS-14A-01D A42880 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42880	SRX597943	"Specific Capture analysis of normal sample TARGET-20-PASRSS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASRSS-14A-01D A42880 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42880_1_lane_dupsFlagged.bam	SRR1395222	@dbgap@:reads/SRP012000/SRS637508/SRX597943/SRR1395222/SRR1395222.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRSS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRSS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASRSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRSS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRSS-14A-01D	DNA	EFO	SRS637508	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRSS-14A-01D A42880 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42880	SRX597943	"Specific Capture analysis of normal sample TARGET-20-PASRSS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASRSS-14A-01D A42880 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42880_1_lane_dupsFlagged.bam	SRR1395222	@dbgap@:reads/SRP012000/SRS637508/SRX597943/SRR1395222/SRR1395222.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRSS-09A-01D_TARGET-20-PASRSS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRSS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRSS-14A-01D	DNA	EFO	SRS637508	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRSS-14A-01D A42880 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42880	SRX597943	"Specific Capture analysis of normal sample TARGET-20-PASRSS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASRSS-14A-01D A42880 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42880_1_lane_dupsFlagged.bam	SRR1395222	@dbgap@:reads/SRP012000/SRS637508/SRX597943/SRR1395222/SRR1395222.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRSS-09A-01D_TARGET-20-PASRSS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRSY-09A-01D	DNA	EFO	SRS635561	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRSY-09A-01D A41810 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41810	SRX593375	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRSY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASRSY-09A-01D A41810 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41810_1_lane_dupsFlagged.bam	SRR1385817	@dbgap@:reads/SRP012000/SRS635561/SRX593375/SRR1385817/SRR1385817.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRSY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRSY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASRSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRSY-09A-01D	DNA	EFO	SRS635561	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRSY-09A-01D A41810 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41810	SRX593375	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRSY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASRSY-09A-01D A41810 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41810_1_lane_dupsFlagged.bam	SRR1385817	@dbgap@:reads/SRP012000/SRS635561/SRX593375/SRR1385817/SRR1385817.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRSY-09A-01D_TARGET-20-PASRSY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRSY-09A-01D	DNA	EFO	SRS635561	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRSY-09A-01D A41810 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41810	SRX593375	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRSY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASRSY-09A-01D A41810 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41810_1_lane_dupsFlagged.bam	SRR1385817	@dbgap@:reads/SRP012000/SRS635561/SRX593375/SRR1385817/SRR1385817.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRSY-09A-01D_TARGET-20-PASRSY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRSY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRSY-14A-01D	DNA	EFO	SRS635663	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRSY-14A-01D A41678 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41678	SRX593488	"Specific Capture analysis of normal sample TARGET-20-PASRSY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASRSY-14A-01D A41678 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41678_1_lane_dupsFlagged.bam	SRR1385975	@dbgap@:reads/SRP012000/SRS635663/SRX593488/SRR1385975/SRR1385975.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRSY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRSY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASRSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRSY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRSY-14A-01D	DNA	EFO	SRS635663	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRSY-14A-01D A41678 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41678	SRX593488	"Specific Capture analysis of normal sample TARGET-20-PASRSY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASRSY-14A-01D A41678 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41678_1_lane_dupsFlagged.bam	SRR1385975	@dbgap@:reads/SRP012000/SRS635663/SRX593488/SRR1385975/SRR1385975.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRSY-09A-01D_TARGET-20-PASRSY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRSY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRSY-14A-01D	DNA	EFO	SRS635663	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRSY-14A-01D A41678 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41678	SRX593488	"Specific Capture analysis of normal sample TARGET-20-PASRSY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASRSY-14A-01D A41678 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41678_1_lane_dupsFlagged.bam	SRR1385975	@dbgap@:reads/SRP012000/SRS635663/SRX593488/SRR1385975/SRR1385975.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRSY-09A-01D_TARGET-20-PASRSY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01D	DNA	EFO	SRS287513	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRTP-09A-01D A31233 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31233	SRX573374	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRTP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASRTP-09A-01D A31233 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31233_1_lane_dupsFlagged.bam	SRR1342608	@dbgap@:reads/SRP012000/SRS287513/SRX573374/SRR1342608/SRR1342608.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRTP-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRTP-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01D	DNA	EFO	SRS287513	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRTP-09A-01D A31233 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31233	SRX573374	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRTP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASRTP-09A-01D A31233 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31233_1_lane_dupsFlagged.bam	SRR1342608	@dbgap@:reads/SRP012000/SRS287513/SRX573374/SRR1342608/SRR1342608.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRTP-09A-01D_TARGET-20-PASRTP-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01D	DNA	EFO	SRS287513	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRTP-09A-01D A31233 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31233	SRX573374	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRTP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASRTP-09A-01D A31233 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31233_1_lane_dupsFlagged.bam	SRR1342608	@dbgap@:reads/SRP012000/SRS287513/SRX573374/SRR1342608/SRR1342608.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRTP-09A-01D_TARGET-20-PASRTP-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-14A-02D	DNA	EFO	SRS635716	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRTP-14A-02D A41668 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41668	SRX593541	"Specific Capture analysis of normal sample TARGET-20-PASRTP-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASRTP-14A-02D A41668 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41668_1_lane_dupsFlagged.bam	SRR1386015	@dbgap@:reads/SRP012000/SRS635716/SRX593541/SRR1386015/SRR1386015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRTP-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRTP-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-14A-02D	DNA	EFO	SRS635716	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRTP-14A-02D A41668 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41668	SRX593541	"Specific Capture analysis of normal sample TARGET-20-PASRTP-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASRTP-14A-02D A41668 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41668_1_lane_dupsFlagged.bam	SRR1386015	@dbgap@:reads/SRP012000/SRS635716/SRX593541/SRR1386015/SRR1386015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRTP-09A-01D_TARGET-20-PASRTP-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-14A-02D	DNA	EFO	SRS635716	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRTP-14A-02D A41668 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41668	SRX593541	"Specific Capture analysis of normal sample TARGET-20-PASRTP-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASRTP-14A-02D A41668 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41668_1_lane_dupsFlagged.bam	SRR1386015	@dbgap@:reads/SRP012000/SRS635716/SRX593541/SRR1386015/SRR1386015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRTP-09A-01D_TARGET-20-PASRTP-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRUJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRUJ-09A-01D	DNA	EFO	SRS633636	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRUJ-09A-01D A33430 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33430	SRX587931	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRUJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASRUJ-09A-01D A33430 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33430_1_lane_dupsFlagged.bam	SRR1373854	@dbgap@:reads/SRP012000/SRS633636/SRX587931/SRR1373854/SRR1373854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRUJ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRUJ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASRUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRUJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRUJ-09A-01D	DNA	EFO	SRS633636	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRUJ-09A-01D A33430 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33430	SRX587931	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRUJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASRUJ-09A-01D A33430 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33430_1_lane_dupsFlagged.bam	SRR1373854	@dbgap@:reads/SRP012000/SRS633636/SRX587931/SRR1373854/SRR1373854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRUJ-09A-01D_TARGET-20-PASRUJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRUJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRUJ-09A-01D	DNA	EFO	SRS633636	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRUJ-09A-01D A33430 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33430	SRX587931	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRUJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASRUJ-09A-01D A33430 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33430_1_lane_dupsFlagged.bam	SRR1373854	@dbgap@:reads/SRP012000/SRS633636/SRX587931/SRR1373854/SRR1373854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRUJ-09A-01D_TARGET-20-PASRUJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRUJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRUJ-14A-01D	DNA	EFO	SRS635948	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRUJ-14A-01D A42511 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42511	SRX593910	"Specific Capture analysis of normal sample TARGET-20-PASRUJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASRUJ-14A-01D A42511 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42511_1_lane_dupsFlagged.bam	SRR1386372	@dbgap@:reads/SRP012000/SRS635948/SRX593910/SRR1386372/SRR1386372.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRUJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRUJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASRUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRUJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRUJ-14A-01D	DNA	EFO	SRS635948	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRUJ-14A-01D A42511 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42511	SRX593910	"Specific Capture analysis of normal sample TARGET-20-PASRUJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASRUJ-14A-01D A42511 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42511_1_lane_dupsFlagged.bam	SRR1386372	@dbgap@:reads/SRP012000/SRS635948/SRX593910/SRR1386372/SRR1386372.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRUJ-09A-01D_TARGET-20-PASRUJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASRUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRUJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRUJ-14A-01D	DNA	EFO	SRS635948	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRUJ-14A-01D A42511 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42511	SRX593910	"Specific Capture analysis of normal sample TARGET-20-PASRUJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASRUJ-14A-01D A42511 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42511_1_lane_dupsFlagged.bam	SRR1386372	@dbgap@:reads/SRP012000/SRS635948/SRX593910/SRR1386372/SRR1386372.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASRUJ-09A-01D_TARGET-20-PASRUJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASRZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASRZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRZX-09A-01D	DNA	EFO	SRS635508	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRZX-09A-01D A41720 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41720	SRX593230	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASRZX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASRZX-09A-01D A41720 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41720_1_lane_dupsFlagged.bam	SRR1385607	@dbgap@:reads/SRP012000/SRS635508/SRX593230/SRR1385607/SRR1385607.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASRZX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASRZX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASSBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSBI-09A-01D	DNA	EFO	SRS635600	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSBI-09A-01D A41943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41943	SRX593420	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSBI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASSBI-09A-01D A41943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41943_1_lane_dupsFlagged.bam	SRR1385880	@dbgap@:reads/SRP012000/SRS635600/SRX593420/SRR1385880/SRR1385880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSBI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSBI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASSBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSBI-09A-01D	DNA	EFO	SRS635600	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSBI-09A-01D A41943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41943	SRX593420	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSBI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASSBI-09A-01D A41943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41943_1_lane_dupsFlagged.bam	SRR1385880	@dbgap@:reads/SRP012000/SRS635600/SRX593420/SRR1385880/SRR1385880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSBI-09A-01D_TARGET-20-PASSBI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSBI-09A-01D	DNA	EFO	SRS635600	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSBI-09A-01D A41943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41943	SRX593420	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSBI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASSBI-09A-01D A41943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41943_1_lane_dupsFlagged.bam	SRR1385880	@dbgap@:reads/SRP012000/SRS635600/SRX593420/SRR1385880/SRR1385880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSBI-09A-01D_TARGET-20-PASSBI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSBI-14A-01D	DNA	EFO	SRS637495	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSBI-14A-01D A42894 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42894	SRX597926	"Specific Capture analysis of normal sample TARGET-20-PASSBI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASSBI-14A-01D A42894 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42894_1_lane_dupsFlagged.bam	SRR1395148	@dbgap@:reads/SRP012000/SRS637495/SRX597926/SRR1395148/SRR1395148.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSBI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSBI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASSBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSBI-14A-01D	DNA	EFO	SRS637495	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSBI-14A-01D A42894 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42894	SRX597926	"Specific Capture analysis of normal sample TARGET-20-PASSBI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASSBI-14A-01D A42894 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42894_1_lane_dupsFlagged.bam	SRR1395148	@dbgap@:reads/SRP012000/SRS637495/SRX597926/SRR1395148/SRR1395148.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSBI-09A-01D_TARGET-20-PASSBI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSBI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSBI-14A-01D	DNA	EFO	SRS637495	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSBI-14A-01D A42894 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42894	SRX597926	"Specific Capture analysis of normal sample TARGET-20-PASSBI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASSBI-14A-01D A42894 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42894_1_lane_dupsFlagged.bam	SRR1395148	@dbgap@:reads/SRP012000/SRS637495/SRX597926/SRR1395148/SRR1395148.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSBI-09A-01D_TARGET-20-PASSBI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSDX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSDX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSDX-09A-01D	DNA	EFO	SRS633632	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSDX-09A-01D A33431 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33431	SRX587925	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSDX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASSDX-09A-01D A33431 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33431_1_lane_dupsFlagged.bam	SRR1373821	@dbgap@:reads/SRP012000/SRS633632/SRX587925/SRR1373821/SRR1373821.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSDX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSDX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASSDX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSDX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSDX-09A-01D	DNA	EFO	SRS633632	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSDX-09A-01D A33431 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33431	SRX587925	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSDX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASSDX-09A-01D A33431 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33431_1_lane_dupsFlagged.bam	SRR1373821	@dbgap@:reads/SRP012000/SRS633632/SRX587925/SRR1373821/SRR1373821.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSDX-09A-01D_TARGET-20-PASSDX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSDX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSDX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSDX-09A-01D	DNA	EFO	SRS633632	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSDX-09A-01D A33431 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33431	SRX587925	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSDX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASSDX-09A-01D A33431 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33431_1_lane_dupsFlagged.bam	SRR1373821	@dbgap@:reads/SRP012000/SRS633632/SRX587925/SRR1373821/SRR1373821.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSDX-09A-01D_TARGET-20-PASSDX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSDX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSDX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSDX-14A-01D	DNA	EFO	SRS636028	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSDX-14A-01D A42575 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42575	SRX594007	"Specific Capture analysis of normal sample TARGET-20-PASSDX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASSDX-14A-01D A42575 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42575_1_lane_dupsFlagged.bam	SRR1386444	@dbgap@:reads/SRP012000/SRS636028/SRX594007/SRR1386444/SRR1386444.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSDX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSDX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASSDX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSDX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSDX-14A-01D	DNA	EFO	SRS636028	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSDX-14A-01D A42575 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42575	SRX594007	"Specific Capture analysis of normal sample TARGET-20-PASSDX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASSDX-14A-01D A42575 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42575_1_lane_dupsFlagged.bam	SRR1386444	@dbgap@:reads/SRP012000/SRS636028/SRX594007/SRR1386444/SRR1386444.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSDX-09A-01D_TARGET-20-PASSDX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSDX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSDX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSDX-14A-01D	DNA	EFO	SRS636028	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSDX-14A-01D A42575 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42575	SRX594007	"Specific Capture analysis of normal sample TARGET-20-PASSDX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASSDX-14A-01D A42575 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42575_1_lane_dupsFlagged.bam	SRR1386444	@dbgap@:reads/SRP012000/SRS636028/SRX594007/SRR1386444/SRR1386444.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSDX-09A-01D_TARGET-20-PASSDX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSGX-09A-01D	DNA	EFO	SRS633698	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSGX-09A-01D A33432 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33432	SRX587991	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSGX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASSGX-09A-01D A33432 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33432_1_lane_dupsFlagged.bam	SRR1373844	@dbgap@:reads/SRP012000/SRS633698/SRX587991/SRR1373844/SRR1373844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSGX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSGX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASSGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSGX-09A-01D	DNA	EFO	SRS633698	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSGX-09A-01D A33432 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33432	SRX587991	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSGX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASSGX-09A-01D A33432 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33432_1_lane_dupsFlagged.bam	SRR1373844	@dbgap@:reads/SRP012000/SRS633698/SRX587991/SRR1373844/SRR1373844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSGX-09A-01D_TARGET-20-PASSGX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSGX-09A-01D	DNA	EFO	SRS633698	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSGX-09A-01D A33432 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33432	SRX587991	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSGX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASSGX-09A-01D A33432 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33432_1_lane_dupsFlagged.bam	SRR1373844	@dbgap@:reads/SRP012000/SRS633698/SRX587991/SRR1373844/SRR1373844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSGX-09A-01D_TARGET-20-PASSGX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSGX-14A-01D	DNA	EFO	SRS635961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSGX-14A-01D A42629 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42629	SRX593923	"Specific Capture analysis of normal sample TARGET-20-PASSGX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASSGX-14A-01D A42629 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42629_1_lane_dupsFlagged.bam	SRR1386434	@dbgap@:reads/SRP012000/SRS635961/SRX593923/SRR1386434/SRR1386434.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSGX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSGX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASSGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSGX-14A-01D	DNA	EFO	SRS635961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSGX-14A-01D A42629 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42629	SRX593923	"Specific Capture analysis of normal sample TARGET-20-PASSGX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASSGX-14A-01D A42629 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42629_1_lane_dupsFlagged.bam	SRR1386434	@dbgap@:reads/SRP012000/SRS635961/SRX593923/SRR1386434/SRR1386434.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSGX-09A-01D_TARGET-20-PASSGX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSGX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSGX-14A-01D	DNA	EFO	SRS635961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSGX-14A-01D A42629 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42629	SRX593923	"Specific Capture analysis of normal sample TARGET-20-PASSGX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASSGX-14A-01D A42629 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42629_1_lane_dupsFlagged.bam	SRR1386434	@dbgap@:reads/SRP012000/SRS635961/SRX593923/SRR1386434/SRR1386434.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSGX-09A-01D_TARGET-20-PASSGX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSHZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSHZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSHZ-09A-01D	DNA	EFO	SRS635537	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSHZ-09A-01D A41823 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41823	SRX593316	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSHZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASSHZ-09A-01D A41823 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41823_1_lane_dupsFlagged.bam	SRR1385806	@dbgap@:reads/SRP012000/SRS635537/SRX593316/SRR1385806/SRR1385806.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSHZ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSHZ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASSHZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSHZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSHZ-09A-01D	DNA	EFO	SRS635537	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSHZ-09A-01D A41823 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41823	SRX593316	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSHZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASSHZ-09A-01D A41823 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41823_1_lane_dupsFlagged.bam	SRR1385806	@dbgap@:reads/SRP012000/SRS635537/SRX593316/SRR1385806/SRR1385806.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSHZ-09A-01D_TARGET-20-PASSHZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSHZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSHZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSHZ-09A-01D	DNA	EFO	SRS635537	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSHZ-09A-01D A41823 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41823	SRX593316	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSHZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASSHZ-09A-01D A41823 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41823_1_lane_dupsFlagged.bam	SRR1385806	@dbgap@:reads/SRP012000/SRS635537/SRX593316/SRR1385806/SRR1385806.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSHZ-09A-01D_TARGET-20-PASSHZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSHZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSHZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSHZ-14A-01D	DNA	EFO	SRS636029	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSHZ-14A-01D A42630 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42630	SRX594006	"Specific Capture analysis of normal sample TARGET-20-PASSHZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASSHZ-14A-01D A42630 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42630_1_lane_dupsFlagged.bam	SRR1386456	@dbgap@:reads/SRP012000/SRS636029/SRX594006/SRR1386456/SRR1386456.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSHZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSHZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASSHZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSHZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSHZ-14A-01D	DNA	EFO	SRS636029	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSHZ-14A-01D A42630 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42630	SRX594006	"Specific Capture analysis of normal sample TARGET-20-PASSHZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASSHZ-14A-01D A42630 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42630_1_lane_dupsFlagged.bam	SRR1386456	@dbgap@:reads/SRP012000/SRS636029/SRX594006/SRR1386456/SRR1386456.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSHZ-09A-01D_TARGET-20-PASSHZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSHZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSHZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSHZ-14A-01D	DNA	EFO	SRS636029	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSHZ-14A-01D A42630 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42630	SRX594006	"Specific Capture analysis of normal sample TARGET-20-PASSHZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASSHZ-14A-01D A42630 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42630_1_lane_dupsFlagged.bam	SRR1386456	@dbgap@:reads/SRP012000/SRS636029/SRX594006/SRR1386456/SRR1386456.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSHZ-09A-01D_TARGET-20-PASSHZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSNX-09A-01D	DNA	EFO	SRS633662	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSNX-09A-01D A33433 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33433	SRX587956	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSNX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASSNX-09A-01D A33433 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33433_1_lane_dupsFlagged.bam	SRR1373815	@dbgap@:reads/SRP012000/SRS633662/SRX587956/SRR1373815/SRR1373815.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSNX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSNX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASSNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSNX-09A-01D	DNA	EFO	SRS633662	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSNX-09A-01D A33433 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33433	SRX587956	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSNX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASSNX-09A-01D A33433 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33433_1_lane_dupsFlagged.bam	SRR1373815	@dbgap@:reads/SRP012000/SRS633662/SRX587956/SRR1373815/SRR1373815.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSNX-09A-01D_TARGET-20-PASSNX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSNX-09A-01D	DNA	EFO	SRS633662	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSNX-09A-01D A33433 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33433	SRX587956	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSNX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASSNX-09A-01D A33433 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33433_1_lane_dupsFlagged.bam	SRR1373815	@dbgap@:reads/SRP012000/SRS633662/SRX587956/SRR1373815/SRR1373815.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSNX-09A-01D_TARGET-20-PASSNX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSNX-14A-01D	DNA	EFO	SRS637435	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSNX-14A-01D A42858 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42858	SRX597845	"Specific Capture analysis of normal sample TARGET-20-PASSNX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASSNX-14A-01D A42858 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42858_1_lane_dupsFlagged.bam	SRR1395069	@dbgap@:reads/SRP012000/SRS637435/SRX597845/SRR1395069/SRR1395069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSNX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSNX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASSNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSNX-14A-01D	DNA	EFO	SRS637435	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSNX-14A-01D A42858 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42858	SRX597845	"Specific Capture analysis of normal sample TARGET-20-PASSNX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASSNX-14A-01D A42858 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42858_1_lane_dupsFlagged.bam	SRR1395069	@dbgap@:reads/SRP012000/SRS637435/SRX597845/SRR1395069/SRR1395069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSNX-09A-01D_TARGET-20-PASSNX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSNX-14A-01D	DNA	EFO	SRS637435	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSNX-14A-01D A42858 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42858	SRX597845	"Specific Capture analysis of normal sample TARGET-20-PASSNX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASSNX-14A-01D A42858 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42858_1_lane_dupsFlagged.bam	SRR1395069	@dbgap@:reads/SRP012000/SRS637435/SRX597845/SRR1395069/SRR1395069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSNX-09A-01D_TARGET-20-PASSNX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-01D	DNA	EFO	SRS489731	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSSI-09A-01D A31267 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31267	SRX573355	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSSI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PASSSI-09A-01D A31267 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31267_1_lane_dupsFlagged.bam	SRR1342660	@dbgap@:reads/SRP012000/SRS489731/SRX573355/SRR1342660/SRR1342660.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSSI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSSI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-01D	DNA	EFO	SRS489731	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSSI-09A-01D A31267 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31267	SRX573355	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSSI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PASSSI-09A-01D A31267 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31267_1_lane_dupsFlagged.bam	SRR1342660	@dbgap@:reads/SRP012000/SRS489731/SRX573355/SRR1342660/SRR1342660.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSSI-09A-01D_TARGET-20-PASSSI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-01D	DNA	EFO	SRS489731	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSSI-09A-01D A31267 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31267	SRX573355	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSSI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PASSSI-09A-01D A31267 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31267_1_lane_dupsFlagged.bam	SRR1342660	@dbgap@:reads/SRP012000/SRS489731/SRX573355/SRR1342660/SRR1342660.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSSI-09A-01D_TARGET-20-PASSSI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-14A-01D	DNA	EFO	SRS489730	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSSI-14A-01D A42331 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42331	SRX593570	"Specific Capture analysis of normal sample TARGET-20-PASSSI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASSSI-14A-01D A42331 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42331_1_lane_dupsFlagged.bam	SRR1386041	@dbgap@:reads/SRP012000/SRS489730/SRX593570/SRR1386041/SRR1386041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSSI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSSI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-14A-01D	DNA	EFO	SRS489730	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSSI-14A-01D A42331 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42331	SRX593570	"Specific Capture analysis of normal sample TARGET-20-PASSSI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASSSI-14A-01D A42331 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42331_1_lane_dupsFlagged.bam	SRR1386041	@dbgap@:reads/SRP012000/SRS489730/SRX593570/SRR1386041/SRR1386041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSSI-09A-01D_TARGET-20-PASSSI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-14A-01D	DNA	EFO	SRS489730	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSSI-14A-01D A42331 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42331	SRX593570	"Specific Capture analysis of normal sample TARGET-20-PASSSI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASSSI-14A-01D A42331 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42331_1_lane_dupsFlagged.bam	SRR1386041	@dbgap@:reads/SRP012000/SRS489730/SRX593570/SRR1386041/SRR1386041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSSI-09A-01D_TARGET-20-PASSSI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSUW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSUW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSUW-09A-01D	DNA	EFO	SRS635540	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSUW-09A-01D A41811 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41811	SRX593322	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSUW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASSUW-09A-01D A41811 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41811_1_lane_dupsFlagged.bam	SRR1385826	@dbgap@:reads/SRP012000/SRS635540/SRX593322/SRR1385826/SRR1385826.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSUW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSUW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASSUW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSUW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSUW-09A-01D	DNA	EFO	SRS635540	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSUW-09A-01D A41811 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41811	SRX593322	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSUW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASSUW-09A-01D A41811 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41811_1_lane_dupsFlagged.bam	SRR1385826	@dbgap@:reads/SRP012000/SRS635540/SRX593322/SRR1385826/SRR1385826.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSUW-09A-01D_TARGET-20-PASSUW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSUW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSUW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSUW-09A-01D	DNA	EFO	SRS635540	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSUW-09A-01D A41811 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41811	SRX593322	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSUW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASSUW-09A-01D A41811 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41811_1_lane_dupsFlagged.bam	SRR1385826	@dbgap@:reads/SRP012000/SRS635540/SRX593322/SRR1385826/SRR1385826.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSUW-09A-01D_TARGET-20-PASSUW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSUW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSUW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSUW-14A-01D	DNA	EFO	SRS635882	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSUW-14A-01D A42541 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42541	SRX593842	"Specific Capture analysis of normal sample TARGET-20-PASSUW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASSUW-14A-01D A42541 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42541_1_lane_dupsFlagged.bam	SRR1386392	@dbgap@:reads/SRP012000/SRS635882/SRX593842/SRR1386392/SRR1386392.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSUW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSUW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASSUW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSUW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSUW-14A-01D	DNA	EFO	SRS635882	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSUW-14A-01D A42541 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42541	SRX593842	"Specific Capture analysis of normal sample TARGET-20-PASSUW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASSUW-14A-01D A42541 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42541_1_lane_dupsFlagged.bam	SRR1386392	@dbgap@:reads/SRP012000/SRS635882/SRX593842/SRR1386392/SRR1386392.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSUW-09A-01D_TARGET-20-PASSUW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSUW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSUW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSUW-14A-01D	DNA	EFO	SRS635882	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSUW-14A-01D A42541 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42541	SRX593842	"Specific Capture analysis of normal sample TARGET-20-PASSUW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASSUW-14A-01D A42541 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42541_1_lane_dupsFlagged.bam	SRR1386392	@dbgap@:reads/SRP012000/SRS635882/SRX593842/SRR1386392/SRR1386392.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSUW-09A-01D_TARGET-20-PASSUW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSVI-09A-01D	DNA	EFO	SRS635528	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSVI-09A-01D A41812 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41812	SRX593300	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSVI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASSVI-09A-01D A41812 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41812_1_lane_dupsFlagged.bam	SRR1385844	@dbgap@:reads/SRP012000/SRS635528/SRX593300/SRR1385844/SRR1385844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSVI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSVI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASSVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSVI-09A-01D	DNA	EFO	SRS635528	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSVI-09A-01D A41812 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41812	SRX593300	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSVI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASSVI-09A-01D A41812 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41812_1_lane_dupsFlagged.bam	SRR1385844	@dbgap@:reads/SRP012000/SRS635528/SRX593300/SRR1385844/SRR1385844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSVI-09A-01D_TARGET-20-PASSVI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSVI-09A-01D	DNA	EFO	SRS635528	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSVI-09A-01D A41812 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41812	SRX593300	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSVI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASSVI-09A-01D A41812 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41812_1_lane_dupsFlagged.bam	SRR1385844	@dbgap@:reads/SRP012000/SRS635528/SRX593300/SRR1385844/SRR1385844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSVI-09A-01D_TARGET-20-PASSVI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSVI-10A-01D	DNA	EFO	SRS637474	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSVI-10A-01D A42877 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42877	SRX597899	"Specific Capture analysis of normal sample TARGET-20-PASSVI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASSVI-10A-01D A42877 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42877_1_lane_dupsFlagged.bam	SRR1395143	@dbgap@:reads/SRP012000/SRS637474/SRX597899/SRR1395143/SRR1395143.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSVI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSVI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASSVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSVI-10A-01D	DNA	EFO	SRS637474	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSVI-10A-01D A42877 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42877	SRX597899	"Specific Capture analysis of normal sample TARGET-20-PASSVI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASSVI-10A-01D A42877 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42877_1_lane_dupsFlagged.bam	SRR1395143	@dbgap@:reads/SRP012000/SRS637474/SRX597899/SRR1395143/SRR1395143.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSVI-09A-01D_TARGET-20-PASSVI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSVI-10A-01D	DNA	EFO	SRS637474	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSVI-10A-01D A42877 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42877	SRX597899	"Specific Capture analysis of normal sample TARGET-20-PASSVI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASSVI-10A-01D A42877 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42877_1_lane_dupsFlagged.bam	SRR1395143	@dbgap@:reads/SRP012000/SRS637474/SRX597899/SRR1395143/SRR1395143.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSVI-09A-01D_TARGET-20-PASSVI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSWG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSWG-03A-01D	DNA	EFO	SRS628331	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSWG-03A-01D A31268 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31268	SRX573410	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSWG-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASSWG-03A-01D A31268 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31268_1_lane_dupsFlagged.bam	SRR1342656	@dbgap@:reads/SRP012000/SRS628331/SRX573410/SRR1342656/SRR1342656.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSWG-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSWG-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASSWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSWG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSWG-03A-01D	DNA	EFO	SRS628331	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSWG-03A-01D A31268 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31268	SRX573410	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSWG-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASSWG-03A-01D A31268 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31268_1_lane_dupsFlagged.bam	SRR1342656	@dbgap@:reads/SRP012000/SRS628331/SRX573410/SRR1342656/SRR1342656.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSWG-03A-01D_TARGET-20-PASSWG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSWG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSWG-03A-01D	DNA	EFO	SRS628331	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSWG-03A-01D A31268 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31268	SRX573410	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSWG-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASSWG-03A-01D A31268 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31268_1_lane_dupsFlagged.bam	SRR1342656	@dbgap@:reads/SRP012000/SRS628331/SRX573410/SRR1342656/SRR1342656.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSWG-03A-01D_TARGET-20-PASSWG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSWG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSWG-04A-01D	DNA	EFO	SRS637339	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSWG-04A-01D A42223 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42223	SRX597728	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSWG-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASSWG-04A-01D A42223 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42223_1_lane_dupsFlagged.bam	SRR1394967	@dbgap@:reads/SRP012000/SRS637339/SRX597728/SRR1394967/SRR1394967.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSWG-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSWG-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASSWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSWG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSWG-04A-01D	DNA	EFO	SRS637339	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSWG-04A-01D A42223 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42223	SRX597728	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSWG-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASSWG-04A-01D A42223 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42223_1_lane_dupsFlagged.bam	SRR1394967	@dbgap@:reads/SRP012000/SRS637339/SRX597728/SRR1394967/SRR1394967.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSWG-04A-01D_TARGET-20-PASSWG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSWG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSWG-04A-01D	DNA	EFO	SRS637339	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSWG-04A-01D A42223 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42223	SRX597728	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSWG-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASSWG-04A-01D A42223 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42223_1_lane_dupsFlagged.bam	SRR1394967	@dbgap@:reads/SRP012000/SRS637339/SRX597728/SRR1394967/SRR1394967.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSWG-04A-01D_TARGET-20-PASSWG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSWG-10A-01D	DNA	EFO	SRS635745	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSWG-10A-01D A42332 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42332	SRX593576	"Specific Capture analysis of normal sample TARGET-20-PASSWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASSWG-10A-01D A42332 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42332_1_lane_dupsFlagged.bam	SRR1386089	@dbgap@:reads/SRP012000/SRS635745/SRX593576/SRR1386089/SRR1386089.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSWG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSWG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASSWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSWG-10A-01D	DNA	EFO	SRS635745	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSWG-10A-01D A42332 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42332	SRX593576	"Specific Capture analysis of normal sample TARGET-20-PASSWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASSWG-10A-01D A42332 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42332_1_lane_dupsFlagged.bam	SRR1386089	@dbgap@:reads/SRP012000/SRS635745/SRX593576/SRR1386089/SRR1386089.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSWG-03A-01D_TARGET-20-PASSWG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSWG-10A-01D	DNA	EFO	SRS635745	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSWG-10A-01D A42332 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42332	SRX593576	"Specific Capture analysis of normal sample TARGET-20-PASSWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASSWG-10A-01D A42332 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42332_1_lane_dupsFlagged.bam	SRR1386089	@dbgap@:reads/SRP012000/SRS635745/SRX593576/SRR1386089/SRR1386089.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSWG-03A-01D_TARGET-20-PASSWG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSWG-10A-01D	DNA	EFO	SRS635745	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSWG-10A-01D A42332 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42332	SRX593576	"Specific Capture analysis of normal sample TARGET-20-PASSWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASSWG-10A-01D A42332 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42332_1_lane_dupsFlagged.bam	SRR1386089	@dbgap@:reads/SRP012000/SRS635745/SRX593576/SRR1386089/SRR1386089.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSWG-04A-01D_TARGET-20-PASSWG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSWG-10A-01D	DNA	EFO	SRS635745	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSWG-10A-01D A42332 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42332	SRX593576	"Specific Capture analysis of normal sample TARGET-20-PASSWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASSWG-10A-01D A42332 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42332_1_lane_dupsFlagged.bam	SRR1386089	@dbgap@:reads/SRP012000/SRS635745/SRX593576/SRR1386089/SRR1386089.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSWG-04A-01D_TARGET-20-PASSWG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSYV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSYV-03A-01D	DNA	EFO	SRS633624	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSYV-03A-01D A33450 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33450	SRX587918	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSYV-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASSYV-03A-01D A33450 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33450_1_lane_dupsFlagged.bam	SRR1373778	@dbgap@:reads/SRP012000/SRS633624/SRX587918/SRR1373778/SRR1373778.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSYV-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSYV-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASSYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSYV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSYV-03A-01D	DNA	EFO	SRS633624	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSYV-03A-01D A33450 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33450	SRX587918	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSYV-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASSYV-03A-01D A33450 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33450_1_lane_dupsFlagged.bam	SRR1373778	@dbgap@:reads/SRP012000/SRS633624/SRX587918/SRR1373778/SRR1373778.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSYV-03A-01D_TARGET-20-PASSYV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSYV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSYV-03A-01D	DNA	EFO	SRS633624	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSYV-03A-01D A33450 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33450	SRX587918	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSYV-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASSYV-03A-01D A33450 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33450_1_lane_dupsFlagged.bam	SRR1373778	@dbgap@:reads/SRP012000/SRS633624/SRX587918/SRR1373778/SRR1373778.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSYV-03A-01D_TARGET-20-PASSYV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSYV-04A-01D	DNA	EFO	SRS637308	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSYV-04A-01D A42253 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42253	SRX597674	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSYV-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASSYV-04A-01D A42253 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42253_1_lane_dupsFlagged.bam	SRR1395027	@dbgap@:reads/SRP012000/SRS637308/SRX597674/SRR1395027/SRR1395027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSYV-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSYV-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASSYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSYV-04A-01D	DNA	EFO	SRS637308	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSYV-04A-01D A42253 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42253	SRX597674	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSYV-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASSYV-04A-01D A42253 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42253_1_lane_dupsFlagged.bam	SRR1395027	@dbgap@:reads/SRP012000/SRS637308/SRX597674/SRR1395027/SRR1395027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSYV-04A-01D_TARGET-20-PASSYV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSYV-04A-01D	DNA	EFO	SRS637308	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSYV-04A-01D A42253 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42253	SRX597674	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASSYV-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASSYV-04A-01D A42253 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42253_1_lane_dupsFlagged.bam	SRR1395027	@dbgap@:reads/SRP012000/SRS637308/SRX597674/SRR1395027/SRR1395027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSYV-04A-01D_TARGET-20-PASSYV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSYV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSYV-14A-01D	DNA	EFO	SRS637444	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSYV-14A-01D A42915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42915	SRX597858	"Specific Capture analysis of normal sample TARGET-20-PASSYV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASSYV-14A-01D A42915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42915_1_lane_dupsFlagged.bam	SRR1395181	@dbgap@:reads/SRP012000/SRS637444/SRX597858/SRR1395181/SRR1395181.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASSYV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASSYV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASSYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSYV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSYV-14A-01D	DNA	EFO	SRS637444	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSYV-14A-01D A42915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42915	SRX597858	"Specific Capture analysis of normal sample TARGET-20-PASSYV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASSYV-14A-01D A42915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42915_1_lane_dupsFlagged.bam	SRR1395181	@dbgap@:reads/SRP012000/SRS637444/SRX597858/SRR1395181/SRR1395181.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSYV-03A-01D_TARGET-20-PASSYV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSYV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSYV-14A-01D	DNA	EFO	SRS637444	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSYV-14A-01D A42915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42915	SRX597858	"Specific Capture analysis of normal sample TARGET-20-PASSYV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASSYV-14A-01D A42915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42915_1_lane_dupsFlagged.bam	SRR1395181	@dbgap@:reads/SRP012000/SRS637444/SRX597858/SRR1395181/SRR1395181.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSYV-03A-01D_TARGET-20-PASSYV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASSYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSYV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSYV-14A-01D	DNA	EFO	SRS637444	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSYV-14A-01D A42915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42915	SRX597858	"Specific Capture analysis of normal sample TARGET-20-PASSYV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASSYV-14A-01D A42915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42915_1_lane_dupsFlagged.bam	SRR1395181	@dbgap@:reads/SRP012000/SRS637444/SRX597858/SRR1395181/SRR1395181.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSYV-04A-01D_TARGET-20-PASSYV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASSYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASSYV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSYV-14A-01D	DNA	EFO	SRS637444	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSYV-14A-01D A42915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42915	SRX597858	"Specific Capture analysis of normal sample TARGET-20-PASSYV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASSYV-14A-01D A42915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42915_1_lane_dupsFlagged.bam	SRR1395181	@dbgap@:reads/SRP012000/SRS637444/SRX597858/SRR1395181/SRR1395181.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASSYV-04A-01D_TARGET-20-PASSYV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTBK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTBK-09A-01D	DNA	EFO	SRS628932	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTBK-09A-01D A32341 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32341	SRX574988	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTBK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASTBK-09A-01D A32341 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32341_1_lane_dupsFlagged.bam	SRR1346190	@dbgap@:reads/SRP012000/SRS628932/SRX574988/SRR1346190/SRR1346190.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTBK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTBK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASTBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTBK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTBK-09A-01D	DNA	EFO	SRS628932	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTBK-09A-01D A32341 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32341	SRX574988	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTBK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASTBK-09A-01D A32341 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32341_1_lane_dupsFlagged.bam	SRR1346190	@dbgap@:reads/SRP012000/SRS628932/SRX574988/SRR1346190/SRR1346190.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTBK-09A-01D_TARGET-20-PASTBK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTBK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTBK-09A-01D	DNA	EFO	SRS628932	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTBK-09A-01D A32341 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32341	SRX574988	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTBK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASTBK-09A-01D A32341 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32341_1_lane_dupsFlagged.bam	SRR1346190	@dbgap@:reads/SRP012000/SRS628932/SRX574988/SRR1346190/SRR1346190.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTBK-09A-01D_TARGET-20-PASTBK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTBK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTBK-14A-01D	DNA	EFO	SRS635647	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTBK-14A-01D A41679 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41679	SRX593473	"Specific Capture analysis of normal sample TARGET-20-PASTBK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASTBK-14A-01D A41679 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41679_1_lane_dupsFlagged.bam	SRR1386012	@dbgap@:reads/SRP012000/SRS635647/SRX593473/SRR1386012/SRR1386012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTBK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTBK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASTBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTBK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTBK-14A-01D	DNA	EFO	SRS635647	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTBK-14A-01D A41679 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41679	SRX593473	"Specific Capture analysis of normal sample TARGET-20-PASTBK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASTBK-14A-01D A41679 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41679_1_lane_dupsFlagged.bam	SRR1386012	@dbgap@:reads/SRP012000/SRS635647/SRX593473/SRR1386012/SRR1386012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTBK-09A-01D_TARGET-20-PASTBK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTBK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTBK-14A-01D	DNA	EFO	SRS635647	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTBK-14A-01D A41679 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41679	SRX593473	"Specific Capture analysis of normal sample TARGET-20-PASTBK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASTBK-14A-01D A41679 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41679_1_lane_dupsFlagged.bam	SRR1386012	@dbgap@:reads/SRP012000/SRS635647/SRX593473/SRR1386012/SRR1386012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTBK-09A-01D_TARGET-20-PASTBK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTEI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTEI-09A-01D	DNA	EFO	SRS633657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTEI-09A-01D A33445 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33445	SRX587951	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTEI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASTEI-09A-01D A33445 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33445_1_lane_dupsFlagged.bam	SRR1373769	@dbgap@:reads/SRP012000/SRS633657/SRX587951/SRR1373769/SRR1373769.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTEI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTEI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASTEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTEI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTEI-09A-01D	DNA	EFO	SRS633657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTEI-09A-01D A33445 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33445	SRX587951	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTEI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASTEI-09A-01D A33445 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33445_1_lane_dupsFlagged.bam	SRR1373769	@dbgap@:reads/SRP012000/SRS633657/SRX587951/SRR1373769/SRR1373769.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTEI-09A-01D_TARGET-20-PASTEI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTEI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTEI-09A-01D	DNA	EFO	SRS633657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTEI-09A-01D A33445 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33445	SRX587951	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTEI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASTEI-09A-01D A33445 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33445_1_lane_dupsFlagged.bam	SRR1373769	@dbgap@:reads/SRP012000/SRS633657/SRX587951/SRR1373769/SRR1373769.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTEI-09A-01D_TARGET-20-PASTEI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTEI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTEI-14A-01D	DNA	EFO	SRS635981	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTEI-14A-01D A42576 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42576	SRX593945	"Specific Capture analysis of normal sample TARGET-20-PASTEI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASTEI-14A-01D A42576 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42576_1_lane_dupsFlagged.bam	SRR1386492	@dbgap@:reads/SRP012000/SRS635981/SRX593945/SRR1386492/SRR1386492.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTEI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTEI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASTEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTEI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTEI-14A-01D	DNA	EFO	SRS635981	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTEI-14A-01D A42576 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42576	SRX593945	"Specific Capture analysis of normal sample TARGET-20-PASTEI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASTEI-14A-01D A42576 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42576_1_lane_dupsFlagged.bam	SRR1386492	@dbgap@:reads/SRP012000/SRS635981/SRX593945/SRR1386492/SRR1386492.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTEI-09A-01D_TARGET-20-PASTEI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTEI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTEI-14A-01D	DNA	EFO	SRS635981	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTEI-14A-01D A42576 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42576	SRX593945	"Specific Capture analysis of normal sample TARGET-20-PASTEI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASTEI-14A-01D A42576 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42576_1_lane_dupsFlagged.bam	SRR1386492	@dbgap@:reads/SRP012000/SRS635981/SRX593945/SRR1386492/SRR1386492.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTEI-09A-01D_TARGET-20-PASTEI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTHA-09A-01D	DNA	EFO	SRS635529	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTHA-09A-01D A41825 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41825	SRX593303	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTHA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASTHA-09A-01D A41825 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41825_1_lane_dupsFlagged.bam	SRR1385857	@dbgap@:reads/SRP012000/SRS635529/SRX593303/SRR1385857/SRR1385857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTHA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTHA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASTHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTHA-09A-01D	DNA	EFO	SRS635529	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTHA-09A-01D A41825 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41825	SRX593303	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTHA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASTHA-09A-01D A41825 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41825_1_lane_dupsFlagged.bam	SRR1385857	@dbgap@:reads/SRP012000/SRS635529/SRX593303/SRR1385857/SRR1385857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTHA-09A-01D_TARGET-20-PASTHA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTHA-09A-01D	DNA	EFO	SRS635529	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTHA-09A-01D A41825 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41825	SRX593303	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTHA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASTHA-09A-01D A41825 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41825_1_lane_dupsFlagged.bam	SRR1385857	@dbgap@:reads/SRP012000/SRS635529/SRX593303/SRR1385857/SRR1385857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTHA-09A-01D_TARGET-20-PASTHA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTHA-14A-01D	DNA	EFO	SRS635655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTHA-14A-01D A41680 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41680	SRX593479	"Specific Capture analysis of normal sample TARGET-20-PASTHA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASTHA-14A-01D A41680 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41680_1_lane_dupsFlagged.bam	SRR1385982	@dbgap@:reads/SRP012000/SRS635655/SRX593479/SRR1385982/SRR1385982.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTHA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTHA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASTHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTHA-14A-01D	DNA	EFO	SRS635655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTHA-14A-01D A41680 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41680	SRX593479	"Specific Capture analysis of normal sample TARGET-20-PASTHA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASTHA-14A-01D A41680 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41680_1_lane_dupsFlagged.bam	SRR1385982	@dbgap@:reads/SRP012000/SRS635655/SRX593479/SRR1385982/SRR1385982.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTHA-09A-01D_TARGET-20-PASTHA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTHA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTHA-14A-01D	DNA	EFO	SRS635655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTHA-14A-01D A41680 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41680	SRX593479	"Specific Capture analysis of normal sample TARGET-20-PASTHA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASTHA-14A-01D A41680 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41680_1_lane_dupsFlagged.bam	SRR1385982	@dbgap@:reads/SRP012000/SRS635655/SRX593479/SRR1385982/SRR1385982.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTHA-09A-01D_TARGET-20-PASTHA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTIE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTIE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTIE-03A-01D	DNA	EFO	SRS628897	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTIE-03A-01D A32281 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32281	SRX574953	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTIE-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASTIE-03A-01D A32281 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32281_1_lane_dupsFlagged.bam	SRR1346198	@dbgap@:reads/SRP012000/SRS628897/SRX574953/SRR1346198/SRR1346198.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTIE-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTIE-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASTIE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTIE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTIE-03A-01D	DNA	EFO	SRS628897	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTIE-03A-01D A32281 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32281	SRX574953	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTIE-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASTIE-03A-01D A32281 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32281_1_lane_dupsFlagged.bam	SRR1346198	@dbgap@:reads/SRP012000/SRS628897/SRX574953/SRR1346198/SRR1346198.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTIE-03A-01D_TARGET-20-PASTIE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTIE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTIE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTIE-03A-01D	DNA	EFO	SRS628897	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTIE-03A-01D A32281 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32281	SRX574953	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTIE-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASTIE-03A-01D A32281 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32281_1_lane_dupsFlagged.bam	SRR1346198	@dbgap@:reads/SRP012000/SRS628897/SRX574953/SRR1346198/SRR1346198.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTIE-03A-01D_TARGET-20-PASTIE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTIE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTIE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTIE-14A-01D	DNA	EFO	SRS635916	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTIE-14A-01D A42542 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42542	SRX593876	"Specific Capture analysis of normal sample TARGET-20-PASTIE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASTIE-14A-01D A42542 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42542_1_lane_dupsFlagged.bam	SRR1386363	@dbgap@:reads/SRP012000/SRS635916/SRX593876/SRR1386363/SRR1386363.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTIE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTIE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASTIE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTIE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTIE-14A-01D	DNA	EFO	SRS635916	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTIE-14A-01D A42542 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42542	SRX593876	"Specific Capture analysis of normal sample TARGET-20-PASTIE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASTIE-14A-01D A42542 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42542_1_lane_dupsFlagged.bam	SRR1386363	@dbgap@:reads/SRP012000/SRS635916/SRX593876/SRR1386363/SRR1386363.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTIE-03A-01D_TARGET-20-PASTIE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTIE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTIE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTIE-14A-01D	DNA	EFO	SRS635916	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTIE-14A-01D A42542 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42542	SRX593876	"Specific Capture analysis of normal sample TARGET-20-PASTIE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASTIE-14A-01D A42542 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42542_1_lane_dupsFlagged.bam	SRR1386363	@dbgap@:reads/SRP012000/SRS635916/SRX593876/SRR1386363/SRR1386363.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTIE-03A-01D_TARGET-20-PASTIE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTJT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTJT-09A-01D	DNA	EFO	SRS628950	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTJT-09A-01D A32282 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32282	SRX575007	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTJT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASTJT-09A-01D A32282 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32282_1_lane_dupsFlagged.bam	SRR1346195	@dbgap@:reads/SRP012000/SRS628950/SRX575007/SRR1346195/SRR1346195.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTJT-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTJT-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASTJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTJT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTJT-09A-01D	DNA	EFO	SRS628950	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTJT-09A-01D A32282 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32282	SRX575007	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTJT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASTJT-09A-01D A32282 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32282_1_lane_dupsFlagged.bam	SRR1346195	@dbgap@:reads/SRP012000/SRS628950/SRX575007/SRR1346195/SRR1346195.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTJT-09A-01D_TARGET-20-PASTJT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTJT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTJT-09A-01D	DNA	EFO	SRS628950	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTJT-09A-01D A32282 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32282	SRX575007	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTJT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASTJT-09A-01D A32282 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32282_1_lane_dupsFlagged.bam	SRR1346195	@dbgap@:reads/SRP012000/SRS628950/SRX575007/SRR1346195/SRR1346195.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTJT-09A-01D_TARGET-20-PASTJT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTJT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTJT-14A-01D	DNA	EFO	SRS637393	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTJT-14A-01D A42862 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42862	SRX597801	"Specific Capture analysis of normal sample TARGET-20-PASTJT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASTJT-14A-01D A42862 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42862_1_lane_dupsFlagged.bam	SRR1395090	@dbgap@:reads/SRP012000/SRS637393/SRX597801/SRR1395090/SRR1395090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTJT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTJT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASTJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTJT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTJT-14A-01D	DNA	EFO	SRS637393	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTJT-14A-01D A42862 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42862	SRX597801	"Specific Capture analysis of normal sample TARGET-20-PASTJT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASTJT-14A-01D A42862 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42862_1_lane_dupsFlagged.bam	SRR1395090	@dbgap@:reads/SRP012000/SRS637393/SRX597801/SRR1395090/SRR1395090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTJT-09A-01D_TARGET-20-PASTJT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTJT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTJT-14A-01D	DNA	EFO	SRS637393	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTJT-14A-01D A42862 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42862	SRX597801	"Specific Capture analysis of normal sample TARGET-20-PASTJT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASTJT-14A-01D A42862 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42862_1_lane_dupsFlagged.bam	SRR1395090	@dbgap@:reads/SRP012000/SRS637393/SRX597801/SRR1395090/SRR1395090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTJT-09A-01D_TARGET-20-PASTJT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTPU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTPU-09A-02D	DNA	EFO	SRS628952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTPU-09A-02D A32283 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32283	SRX575009	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTPU-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASTPU-09A-02D A32283 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32283_1_lane_dupsFlagged.bam	SRR1346172	@dbgap@:reads/SRP012000/SRS628952/SRX575009/SRR1346172/SRR1346172.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTPU-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTPU-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASTPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTPU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTPU-09A-02D	DNA	EFO	SRS628952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTPU-09A-02D A32283 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32283	SRX575009	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTPU-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASTPU-09A-02D A32283 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32283_1_lane_dupsFlagged.bam	SRR1346172	@dbgap@:reads/SRP012000/SRS628952/SRX575009/SRR1346172/SRR1346172.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTPU-09A-02D_TARGET-20-PASTPU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTPU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTPU-09A-02D	DNA	EFO	SRS628952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTPU-09A-02D A32283 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32283	SRX575009	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTPU-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASTPU-09A-02D A32283 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32283_1_lane_dupsFlagged.bam	SRR1346172	@dbgap@:reads/SRP012000/SRS628952/SRX575009/SRR1346172/SRR1346172.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTPU-09A-02D_TARGET-20-PASTPU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTPU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTPU-14A-01D	DNA	EFO	SRS637503	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTPU-14A-01D A42879 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42879	SRX597935	"Specific Capture analysis of normal sample TARGET-20-PASTPU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASTPU-14A-01D A42879 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42879_1_lane_dupsFlagged.bam	SRR1395202	@dbgap@:reads/SRP012000/SRS637503/SRX597935/SRR1395202/SRR1395202.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTPU-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTPU-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASTPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTPU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTPU-14A-01D	DNA	EFO	SRS637503	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTPU-14A-01D A42879 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42879	SRX597935	"Specific Capture analysis of normal sample TARGET-20-PASTPU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASTPU-14A-01D A42879 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42879_1_lane_dupsFlagged.bam	SRR1395202	@dbgap@:reads/SRP012000/SRS637503/SRX597935/SRR1395202/SRR1395202.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTPU-09A-02D_TARGET-20-PASTPU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTPU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTPU-14A-01D	DNA	EFO	SRS637503	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTPU-14A-01D A42879 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42879	SRX597935	"Specific Capture analysis of normal sample TARGET-20-PASTPU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASTPU-14A-01D A42879 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42879_1_lane_dupsFlagged.bam	SRR1395202	@dbgap@:reads/SRP012000/SRS637503/SRX597935/SRR1395202/SRR1395202.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTPU-09A-02D_TARGET-20-PASTPU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTSH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTSH-09A-01D	DNA	EFO	SRS633702	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTSH-09A-01D A33451 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33451	SRX587997	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTSH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASTSH-09A-01D A33451 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33451_1_lane_dupsFlagged.bam	SRR1373785	@dbgap@:reads/SRP012000/SRS633702/SRX587997/SRR1373785/SRR1373785.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTSH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTSH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASTSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTSH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTSH-09A-01D	DNA	EFO	SRS633702	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTSH-09A-01D A33451 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33451	SRX587997	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTSH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASTSH-09A-01D A33451 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33451_1_lane_dupsFlagged.bam	SRR1373785	@dbgap@:reads/SRP012000/SRS633702/SRX587997/SRR1373785/SRR1373785.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTSH-09A-01D_TARGET-20-PASTSH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTSH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTSH-09A-01D	DNA	EFO	SRS633702	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTSH-09A-01D A33451 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33451	SRX587997	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTSH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASTSH-09A-01D A33451 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33451_1_lane_dupsFlagged.bam	SRR1373785	@dbgap@:reads/SRP012000/SRS633702/SRX587997/SRR1373785/SRR1373785.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTSH-09A-01D_TARGET-20-PASTSH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTSH-14A-01D	DNA	EFO	SRS635639	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTSH-14A-01D A41655 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41655	SRX593461	"Specific Capture analysis of normal sample TARGET-20-PASTSH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASTSH-14A-01D A41655 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41655_1_lane_dupsFlagged.bam	SRR1385994	@dbgap@:reads/SRP012000/SRS635639/SRX593461/SRR1385994/SRR1385994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTSH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTSH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASTSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTSH-14A-01D	DNA	EFO	SRS635639	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTSH-14A-01D A41655 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41655	SRX593461	"Specific Capture analysis of normal sample TARGET-20-PASTSH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASTSH-14A-01D A41655 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41655_1_lane_dupsFlagged.bam	SRR1385994	@dbgap@:reads/SRP012000/SRS635639/SRX593461/SRR1385994/SRR1385994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTSH-09A-01D_TARGET-20-PASTSH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTSH-14A-01D	DNA	EFO	SRS635639	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTSH-14A-01D A41655 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41655	SRX593461	"Specific Capture analysis of normal sample TARGET-20-PASTSH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASTSH-14A-01D A41655 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41655_1_lane_dupsFlagged.bam	SRR1385994	@dbgap@:reads/SRP012000/SRS635639/SRX593461/SRR1385994/SRR1385994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTSH-09A-01D_TARGET-20-PASTSH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTTJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTJ-03A-01D	DNA	EFO	SRS628332	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTTJ-03A-01D A31239 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31239	SRX573411	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTTJ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASTTJ-03A-01D A31239 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31239_1_lane_dupsFlagged.bam	SRR1342637	@dbgap@:reads/SRP012000/SRS628332/SRX573411/SRR1342637/SRR1342637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTTJ-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTTJ-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASTTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTTJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTJ-03A-01D	DNA	EFO	SRS628332	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTTJ-03A-01D A31239 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31239	SRX573411	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTTJ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASTTJ-03A-01D A31239 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31239_1_lane_dupsFlagged.bam	SRR1342637	@dbgap@:reads/SRP012000/SRS628332/SRX573411/SRR1342637/SRR1342637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTTJ-03A-01D_TARGET-20-PASTTJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTTJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTJ-03A-01D	DNA	EFO	SRS628332	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTTJ-03A-01D A31239 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31239	SRX573411	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTTJ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASTTJ-03A-01D A31239 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31239_1_lane_dupsFlagged.bam	SRR1342637	@dbgap@:reads/SRP012000/SRS628332/SRX573411/SRR1342637/SRR1342637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTTJ-03A-01D_TARGET-20-PASTTJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTTJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTJ-14A-01D	DNA	EFO	SRS635933	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTTJ-14A-01D A42524 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42524	SRX593892	"Specific Capture analysis of normal sample TARGET-20-PASTTJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASTTJ-14A-01D A42524 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42524_1_lane_dupsFlagged.bam	SRR1386399	@dbgap@:reads/SRP012000/SRS635933/SRX593892/SRR1386399/SRR1386399.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTTJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTTJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASTTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTTJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTJ-14A-01D	DNA	EFO	SRS635933	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTTJ-14A-01D A42524 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42524	SRX593892	"Specific Capture analysis of normal sample TARGET-20-PASTTJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASTTJ-14A-01D A42524 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42524_1_lane_dupsFlagged.bam	SRR1386399	@dbgap@:reads/SRP012000/SRS635933/SRX593892/SRR1386399/SRR1386399.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTTJ-03A-01D_TARGET-20-PASTTJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTTJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTJ-14A-01D	DNA	EFO	SRS635933	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTTJ-14A-01D A42524 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42524	SRX593892	"Specific Capture analysis of normal sample TARGET-20-PASTTJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASTTJ-14A-01D A42524 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42524_1_lane_dupsFlagged.bam	SRR1386399	@dbgap@:reads/SRP012000/SRS635933/SRX593892/SRR1386399/SRR1386399.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTTJ-03A-01D_TARGET-20-PASTTJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01D	DNA	EFO	SRS301147	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTUH-03A-01D A31240 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31240	SRX573390	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTUH-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASTUH-03A-01D A31240 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31240_1_lane_dupsFlagged.bam	SRR1342690	@dbgap@:reads/SRP012000/SRS301147/SRX573390/SRR1342690/SRR1342690.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTUH-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTUH-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01D	DNA	EFO	SRS301147	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTUH-03A-01D A31240 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31240	SRX573390	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTUH-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASTUH-03A-01D A31240 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31240_1_lane_dupsFlagged.bam	SRR1342690	@dbgap@:reads/SRP012000/SRS301147/SRX573390/SRR1342690/SRR1342690.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTUH-03A-01D_TARGET-20-PASTUH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01D	DNA	EFO	SRS301147	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTUH-03A-01D A31240 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31240	SRX573390	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTUH-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASTUH-03A-01D A31240 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31240_1_lane_dupsFlagged.bam	SRR1342690	@dbgap@:reads/SRP012000/SRS301147/SRX573390/SRR1342690/SRR1342690.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTUH-03A-01D_TARGET-20-PASTUH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTUH-14A-01D A42881 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42881	SRX597860	"Specific Capture analysis of normal sample TARGET-20-PASTUH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASTUH-14A-01D A42881 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42881_1_lane_dupsFlagged.bam	SRR1395208	@dbgap@:reads/SRP012000/SRS301148/SRX597860/SRR1395208/SRR1395208.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTUH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTUH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTUH-14A-01D A42881 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42881	SRX597860	"Specific Capture analysis of normal sample TARGET-20-PASTUH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASTUH-14A-01D A42881 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42881_1_lane_dupsFlagged.bam	SRR1395208	@dbgap@:reads/SRP012000/SRS301148/SRX597860/SRR1395208/SRR1395208.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTUH-03A-01D_TARGET-20-PASTUH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-14A-01D	DNA	EFO	SRS301148	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTUH-14A-01D A42881 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42881	SRX597860	"Specific Capture analysis of normal sample TARGET-20-PASTUH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASTUH-14A-01D A42881 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42881_1_lane_dupsFlagged.bam	SRR1395208	@dbgap@:reads/SRP012000/SRS301148/SRX597860/SRR1395208/SRR1395208.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTUH-03A-01D_TARGET-20-PASTUH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTVM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTVM-09A-01D	DNA	EFO	SRS635562	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTVM-09A-01D A41826 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41826	SRX593377	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTVM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASTVM-09A-01D A41826 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41826_1_lane_dupsFlagged.bam	SRR1385824	@dbgap@:reads/SRP012000/SRS635562/SRX593377/SRR1385824/SRR1385824.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTVM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTVM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASTWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTWE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTWE-09A-01D	DNA	EFO	SRS633671	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTWE-09A-01D A33452 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33452	SRX587965	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTWE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASTWE-09A-01D A33452 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33452_1_lane_dupsFlagged.bam	SRR1373775	@dbgap@:reads/SRP012000/SRS633671/SRX587965/SRR1373775/SRR1373775.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTWE-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTWE-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASTXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTXM-09A-01D	DNA	EFO	SRS633957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTXM-09A-01D A41431 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41431	SRX588564	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTXM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASTXM-09A-01D A41431 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41431_1_lane_dupsFlagged.bam	SRR1374869	@dbgap@:reads/SRP012000/SRS633957/SRX588564/SRR1374869/SRR1374869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTXM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTXM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASTXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTXM-09A-01D	DNA	EFO	SRS633957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTXM-09A-01D A41431 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41431	SRX588564	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTXM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASTXM-09A-01D A41431 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41431_1_lane_dupsFlagged.bam	SRR1374869	@dbgap@:reads/SRP012000/SRS633957/SRX588564/SRR1374869/SRR1374869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTXM-09A-01D_TARGET-20-PASTXM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTXM-09A-01D	DNA	EFO	SRS633957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTXM-09A-01D A41431 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41431	SRX588564	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTXM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASTXM-09A-01D A41431 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41431_1_lane_dupsFlagged.bam	SRR1374869	@dbgap@:reads/SRP012000/SRS633957/SRX588564/SRR1374869/SRR1374869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTXM-09A-01D_TARGET-20-PASTXM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTXM-14A-01D	DNA	EFO	SRS635654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTXM-14A-01D A41681 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41681	SRX593478	"Specific Capture analysis of normal sample TARGET-20-PASTXM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASTXM-14A-01D A41681 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41681_1_lane_dupsFlagged.bam	SRR1386001	@dbgap@:reads/SRP012000/SRS635654/SRX593478/SRR1386001/SRR1386001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTXM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTXM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASTXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTXM-14A-01D	DNA	EFO	SRS635654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTXM-14A-01D A41681 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41681	SRX593478	"Specific Capture analysis of normal sample TARGET-20-PASTXM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASTXM-14A-01D A41681 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41681_1_lane_dupsFlagged.bam	SRR1386001	@dbgap@:reads/SRP012000/SRS635654/SRX593478/SRR1386001/SRR1386001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTXM-09A-01D_TARGET-20-PASTXM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTXM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTXM-14A-01D	DNA	EFO	SRS635654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTXM-14A-01D A41681 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41681	SRX593478	"Specific Capture analysis of normal sample TARGET-20-PASTXM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASTXM-14A-01D A41681 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41681_1_lane_dupsFlagged.bam	SRR1386001	@dbgap@:reads/SRP012000/SRS635654/SRX593478/SRR1386001/SRR1386001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTXM-09A-01D_TARGET-20-PASTXM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTZD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTZD-09A-01D	DNA	EFO	SRS633959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTZD-09A-01D A41429 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41429	SRX588565	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTZD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASTZD-09A-01D A41429 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41429_1_lane_dupsFlagged.bam	SRR1374871	@dbgap@:reads/SRP012000/SRS633959/SRX588565/SRR1374871/SRR1374871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTZD-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTZD-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASTZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTZD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTZD-09A-01D	DNA	EFO	SRS633959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTZD-09A-01D A41429 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41429	SRX588565	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTZD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASTZD-09A-01D A41429 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41429_1_lane_dupsFlagged.bam	SRR1374871	@dbgap@:reads/SRP012000/SRS633959/SRX588565/SRR1374871/SRR1374871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTZD-09A-01D_TARGET-20-PASTZD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTZD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTZD-09A-01D	DNA	EFO	SRS633959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTZD-09A-01D A41429 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41429	SRX588565	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTZD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASTZD-09A-01D A41429 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41429_1_lane_dupsFlagged.bam	SRR1374871	@dbgap@:reads/SRP012000/SRS633959/SRX588565/SRR1374871/SRR1374871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTZD-09A-01D_TARGET-20-PASTZD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTZD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTZD-14A-01D	DNA	EFO	SRS635754	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTZD-14A-01D A42333 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42333	SRX593589	"Specific Capture analysis of normal sample TARGET-20-PASTZD-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASTZD-14A-01D A42333 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42333_1_lane_dupsFlagged.bam	SRR1386090	@dbgap@:reads/SRP012000/SRS635754/SRX593589/SRR1386090/SRR1386090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTZD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTZD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASTZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTZD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTZD-14A-01D	DNA	EFO	SRS635754	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTZD-14A-01D A42333 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42333	SRX593589	"Specific Capture analysis of normal sample TARGET-20-PASTZD-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASTZD-14A-01D A42333 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42333_1_lane_dupsFlagged.bam	SRR1386090	@dbgap@:reads/SRP012000/SRS635754/SRX593589/SRR1386090/SRR1386090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTZD-09A-01D_TARGET-20-PASTZD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTZD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTZD-14A-01D	DNA	EFO	SRS635754	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTZD-14A-01D A42333 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42333	SRX593589	"Specific Capture analysis of normal sample TARGET-20-PASTZD-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASTZD-14A-01D A42333 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42333_1_lane_dupsFlagged.bam	SRR1386090	@dbgap@:reads/SRP012000/SRS635754/SRX593589/SRR1386090/SRR1386090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTZD-09A-01D_TARGET-20-PASTZD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTZK-09A-01D	DNA	EFO	SRS628281	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTZK-09A-01D A31213 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31213	SRX573336	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTZK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASTZK-09A-01D A31213 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31213_1_lane_dupsFlagged.bam	SRR1342653	@dbgap@:reads/SRP012000/SRS628281/SRX573336/SRR1342653/SRR1342653.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTZK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTZK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTZK-09A-01D	DNA	EFO	SRS628281	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTZK-09A-01D A31213 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31213	SRX573336	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTZK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASTZK-09A-01D A31213 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31213_1_lane_dupsFlagged.bam	SRR1342653	@dbgap@:reads/SRP012000/SRS628281/SRX573336/SRR1342653/SRR1342653.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTZK-09A-01D_TARGET-20-PASTZK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTZK-09A-01D	DNA	EFO	SRS628281	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTZK-09A-01D A31213 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31213	SRX573336	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTZK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASTZK-09A-01D A31213 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31213_1_lane_dupsFlagged.bam	SRR1342653	@dbgap@:reads/SRP012000/SRS628281/SRX573336/SRR1342653/SRR1342653.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTZK-09A-01D_TARGET-20-PASTZK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTZK-14A-01D	DNA	EFO	SRS635777	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTZK-14A-01D A42287 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42287	SRX593616	"Specific Capture analysis of normal sample TARGET-20-PASTZK-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASTZK-14A-01D A42287 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42287_1_lane_dupsFlagged.bam	SRR1386066	@dbgap@:reads/SRP012000/SRS635777/SRX593616/SRR1386066/SRR1386066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTZK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTZK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTZK-14A-01D	DNA	EFO	SRS635777	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTZK-14A-01D A42287 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42287	SRX593616	"Specific Capture analysis of normal sample TARGET-20-PASTZK-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASTZK-14A-01D A42287 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42287_1_lane_dupsFlagged.bam	SRR1386066	@dbgap@:reads/SRP012000/SRS635777/SRX593616/SRR1386066/SRR1386066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTZK-09A-01D_TARGET-20-PASTZK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTZK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTZK-14A-01D	DNA	EFO	SRS635777	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTZK-14A-01D A42287 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42287	SRX593616	"Specific Capture analysis of normal sample TARGET-20-PASTZK-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASTZK-14A-01D A42287 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42287_1_lane_dupsFlagged.bam	SRR1386066	@dbgap@:reads/SRP012000/SRS635777/SRX593616/SRR1386066/SRR1386066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTZK-09A-01D_TARGET-20-PASTZK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTZU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTZU-09A-01D	DNA	EFO	SRS635526	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTZU-09A-01D A41828 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41828	SRX593295	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTZU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASTZU-09A-01D A41828 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41828_1_lane_dupsFlagged.bam	SRR1385810	@dbgap@:reads/SRP012000/SRS635526/SRX593295/SRR1385810/SRR1385810.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTZU-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTZU-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASTZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTZU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTZU-09A-01D	DNA	EFO	SRS635526	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTZU-09A-01D A41828 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41828	SRX593295	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTZU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASTZU-09A-01D A41828 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41828_1_lane_dupsFlagged.bam	SRR1385810	@dbgap@:reads/SRP012000/SRS635526/SRX593295/SRR1385810/SRR1385810.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTZU-09A-01D_TARGET-20-PASTZU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTZU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTZU-09A-01D	DNA	EFO	SRS635526	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTZU-09A-01D A41828 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41828	SRX593295	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASTZU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASTZU-09A-01D A41828 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41828_1_lane_dupsFlagged.bam	SRR1385810	@dbgap@:reads/SRP012000/SRS635526/SRX593295/SRR1385810/SRR1385810.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTZU-09A-01D_TARGET-20-PASTZU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASTZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTZU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTZU-14A-01D	DNA	EFO	SRS635922	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTZU-14A-01D A42512 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42512	SRX593882	"Specific Capture analysis of normal sample TARGET-20-PASTZU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASTZU-14A-01D A42512 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42512_1_lane_dupsFlagged.bam	SRR1386386	@dbgap@:reads/SRP012000/SRS635922/SRX593882/SRR1386386/SRR1386386.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASTZU-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASTZU-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASTZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTZU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTZU-14A-01D	DNA	EFO	SRS635922	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTZU-14A-01D A42512 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42512	SRX593882	"Specific Capture analysis of normal sample TARGET-20-PASTZU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASTZU-14A-01D A42512 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42512_1_lane_dupsFlagged.bam	SRR1386386	@dbgap@:reads/SRP012000/SRS635922/SRX593882/SRR1386386/SRR1386386.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTZU-09A-01D_TARGET-20-PASTZU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASTZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASTZU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTZU-14A-01D	DNA	EFO	SRS635922	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTZU-14A-01D A42512 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42512	SRX593882	"Specific Capture analysis of normal sample TARGET-20-PASTZU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASTZU-14A-01D A42512 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42512_1_lane_dupsFlagged.bam	SRR1386386	@dbgap@:reads/SRP012000/SRS635922/SRX593882/SRR1386386/SRR1386386.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASTZU-09A-01D_TARGET-20-PASTZU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUAF-09A-01D	DNA	EFO	SRS635556	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUAF-09A-01D A41827 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41827	SRX593359	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUAF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASUAF-09A-01D A41827 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41827_1_lane_dupsFlagged.bam	SRR1385784	@dbgap@:reads/SRP012000/SRS635556/SRX593359/SRR1385784/SRR1385784.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASUAF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASUAF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASUAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUAF-09A-01D	DNA	EFO	SRS635556	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUAF-09A-01D A41827 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41827	SRX593359	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUAF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASUAF-09A-01D A41827 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41827_1_lane_dupsFlagged.bam	SRR1385784	@dbgap@:reads/SRP012000/SRS635556/SRX593359/SRR1385784/SRR1385784.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUAF-09A-01D_TARGET-20-PASUAF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUAF-09A-01D	DNA	EFO	SRS635556	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUAF-09A-01D A41827 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41827	SRX593359	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUAF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASUAF-09A-01D A41827 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41827_1_lane_dupsFlagged.bam	SRR1385784	@dbgap@:reads/SRP012000/SRS635556/SRX593359/SRR1385784/SRR1385784.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUAF-09A-01D_TARGET-20-PASUAF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUAF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUAF-14A-01D	DNA	EFO	SRS637493	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUAF-14A-01D A42882 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42882	SRX597924	"Specific Capture analysis of normal sample TARGET-20-PASUAF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASUAF-14A-01D A42882 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42882_1_lane_dupsFlagged.bam	SRR1395191	@dbgap@:reads/SRP012000/SRS637493/SRX597924/SRR1395191/SRR1395191.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASUAF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASUAF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASUAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUAF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUAF-14A-01D	DNA	EFO	SRS637493	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUAF-14A-01D A42882 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42882	SRX597924	"Specific Capture analysis of normal sample TARGET-20-PASUAF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASUAF-14A-01D A42882 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42882_1_lane_dupsFlagged.bam	SRR1395191	@dbgap@:reads/SRP012000/SRS637493/SRX597924/SRR1395191/SRR1395191.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUAF-09A-01D_TARGET-20-PASUAF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUAF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUAF-14A-01D	DNA	EFO	SRS637493	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUAF-14A-01D A42882 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42882	SRX597924	"Specific Capture analysis of normal sample TARGET-20-PASUAF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASUAF-14A-01D A42882 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42882_1_lane_dupsFlagged.bam	SRR1395191	@dbgap@:reads/SRP012000/SRS637493/SRX597924/SRR1395191/SRR1395191.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUAF-09A-01D_TARGET-20-PASUAF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUCA-09A-01D	DNA	EFO	SRS635555	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUCA-09A-01D A41829 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41829	SRX593358	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUCA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASUCA-09A-01D A41829 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41829_1_lane_dupsFlagged.bam	SRR1385859	@dbgap@:reads/SRP012000/SRS635555/SRX593358/SRR1385859/SRR1385859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASUCA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASUCA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASUCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUCA-09A-01D	DNA	EFO	SRS635555	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUCA-09A-01D A41829 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41829	SRX593358	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUCA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASUCA-09A-01D A41829 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41829_1_lane_dupsFlagged.bam	SRR1385859	@dbgap@:reads/SRP012000/SRS635555/SRX593358/SRR1385859/SRR1385859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUCA-09A-01D_TARGET-20-PASUCA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUCA-09A-01D	DNA	EFO	SRS635555	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUCA-09A-01D A41829 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41829	SRX593358	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUCA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASUCA-09A-01D A41829 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41829_1_lane_dupsFlagged.bam	SRR1385859	@dbgap@:reads/SRP012000/SRS635555/SRX593358/SRR1385859/SRR1385859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUCA-09A-01D_TARGET-20-PASUCA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUCA-14A-01D	DNA	EFO	SRS635972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUCA-14A-01D A42617 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42617	SRX593934	"Specific Capture analysis of normal sample TARGET-20-PASUCA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASUCA-14A-01D A42617 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42617_1_lane_dupsFlagged.bam	SRR1386458	@dbgap@:reads/SRP012000/SRS635972/SRX593934/SRR1386458/SRR1386458.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASUCA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASUCA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASUCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUCA-14A-01D	DNA	EFO	SRS635972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUCA-14A-01D A42617 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42617	SRX593934	"Specific Capture analysis of normal sample TARGET-20-PASUCA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASUCA-14A-01D A42617 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42617_1_lane_dupsFlagged.bam	SRR1386458	@dbgap@:reads/SRP012000/SRS635972/SRX593934/SRR1386458/SRR1386458.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUCA-09A-01D_TARGET-20-PASUCA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUCA-14A-01D	DNA	EFO	SRS635972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUCA-14A-01D A42617 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42617	SRX593934	"Specific Capture analysis of normal sample TARGET-20-PASUCA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASUCA-14A-01D A42617 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42617_1_lane_dupsFlagged.bam	SRR1386458	@dbgap@:reads/SRP012000/SRS635972/SRX593934/SRR1386458/SRR1386458.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUCA-09A-01D_TARGET-20-PASUCA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUGU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUGU-09A-01D	DNA	EFO	SRS633685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUGU-09A-01D A33446 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33446	SRX587979	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUGU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASUGU-09A-01D A33446 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33446_1_lane_dupsFlagged.bam	SRR1373833	@dbgap@:reads/SRP012000/SRS633685/SRX587979/SRR1373833/SRR1373833.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASUGU-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASUGU-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASUGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUGU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUGU-09A-01D	DNA	EFO	SRS633685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUGU-09A-01D A33446 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33446	SRX587979	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUGU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASUGU-09A-01D A33446 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33446_1_lane_dupsFlagged.bam	SRR1373833	@dbgap@:reads/SRP012000/SRS633685/SRX587979/SRR1373833/SRR1373833.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUGU-09A-01D_TARGET-20-PASUGU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUGU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUGU-09A-01D	DNA	EFO	SRS633685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUGU-09A-01D A33446 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33446	SRX587979	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUGU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASUGU-09A-01D A33446 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33446_1_lane_dupsFlagged.bam	SRR1373833	@dbgap@:reads/SRP012000/SRS633685/SRX587979/SRR1373833/SRR1373833.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUGU-09A-01D_TARGET-20-PASUGU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUGU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUGU-14A-01D	DNA	EFO	SRS635719	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUGU-14A-01D A42310 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42310	SRX593544	"Specific Capture analysis of normal sample TARGET-20-PASUGU-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASUGU-14A-01D A42310 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42310_1_lane_dupsFlagged.bam	SRR1386097	@dbgap@:reads/SRP012000/SRS635719/SRX593544/SRR1386097/SRR1386097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASUGU-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASUGU-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASUGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUGU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUGU-14A-01D	DNA	EFO	SRS635719	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUGU-14A-01D A42310 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42310	SRX593544	"Specific Capture analysis of normal sample TARGET-20-PASUGU-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASUGU-14A-01D A42310 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42310_1_lane_dupsFlagged.bam	SRR1386097	@dbgap@:reads/SRP012000/SRS635719/SRX593544/SRR1386097/SRR1386097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUGU-09A-01D_TARGET-20-PASUGU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUGU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUGU-14A-01D	DNA	EFO	SRS635719	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUGU-14A-01D A42310 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42310	SRX593544	"Specific Capture analysis of normal sample TARGET-20-PASUGU-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASUGU-14A-01D A42310 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42310_1_lane_dupsFlagged.bam	SRR1386097	@dbgap@:reads/SRP012000/SRS635719/SRX593544/SRR1386097/SRR1386097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUGU-09A-01D_TARGET-20-PASUGU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASUHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUHK-04A-01D	DNA	EFO	SRS637322	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUHK-04A-01D A42226 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42226	SRX597700	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUHK-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASUHK-04A-01D A42226 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42226_1_lane_dupsFlagged.bam	SRR1395032	@dbgap@:reads/SRP012000/SRS637322/SRX597700/SRR1395032/SRR1395032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASUHK-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASUHK-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASUHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASUHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUHK-04A-01D	DNA	EFO	SRS637322	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUHK-04A-01D A42226 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42226	SRX597700	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUHK-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASUHK-04A-01D A42226 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42226_1_lane_dupsFlagged.bam	SRR1395032	@dbgap@:reads/SRP012000/SRS637322/SRX597700/SRR1395032/SRR1395032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUHK-04A-01D_TARGET-20-PASUHK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASUHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUHK-04A-01D	DNA	EFO	SRS637322	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUHK-04A-01D A42226 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42226	SRX597700	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUHK-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASUHK-04A-01D A42226 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42226_1_lane_dupsFlagged.bam	SRR1395032	@dbgap@:reads/SRP012000/SRS637322/SRX597700/SRR1395032/SRR1395032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUHK-04A-01D_TARGET-20-PASUHK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASUHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUHK-09A-01D	DNA	EFO	SRS628976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUHK-09A-01D A32284 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32284	SRX575031	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUHK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASUHK-09A-01D A32284 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32284_1_lane_dupsFlagged.bam	SRR1346131	@dbgap@:reads/SRP012000/SRS628976/SRX575031/SRR1346131/SRR1346131.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASUHK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASUHK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASUHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASUHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUHK-09A-01D	DNA	EFO	SRS628976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUHK-09A-01D A32284 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32284	SRX575031	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUHK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASUHK-09A-01D A32284 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32284_1_lane_dupsFlagged.bam	SRR1346131	@dbgap@:reads/SRP012000/SRS628976/SRX575031/SRR1346131/SRR1346131.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUHK-09A-01D_TARGET-20-PASUHK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASUHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUHK-09A-01D	DNA	EFO	SRS628976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUHK-09A-01D A32284 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32284	SRX575031	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUHK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASUHK-09A-01D A32284 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32284_1_lane_dupsFlagged.bam	SRR1346131	@dbgap@:reads/SRP012000/SRS628976/SRX575031/SRR1346131/SRR1346131.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUHK-09A-01D_TARGET-20-PASUHK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASUHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUHK-14A-01D	DNA	EFO	SRS636008	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUHK-14A-01D A42616 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42616	SRX593978	"Specific Capture analysis of normal sample TARGET-20-PASUHK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASUHK-14A-01D A42616 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42616_1_lane_dupsFlagged.bam	SRR1386426	@dbgap@:reads/SRP012000/SRS636008/SRX593978/SRR1386426/SRR1386426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASUHK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASUHK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASUHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASUHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUHK-14A-01D	DNA	EFO	SRS636008	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUHK-14A-01D A42616 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42616	SRX593978	"Specific Capture analysis of normal sample TARGET-20-PASUHK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASUHK-14A-01D A42616 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42616_1_lane_dupsFlagged.bam	SRR1386426	@dbgap@:reads/SRP012000/SRS636008/SRX593978/SRR1386426/SRR1386426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUHK-04A-01D_TARGET-20-PASUHK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASUHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUHK-14A-01D	DNA	EFO	SRS636008	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUHK-14A-01D A42616 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42616	SRX593978	"Specific Capture analysis of normal sample TARGET-20-PASUHK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASUHK-14A-01D A42616 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42616_1_lane_dupsFlagged.bam	SRR1386426	@dbgap@:reads/SRP012000/SRS636008/SRX593978/SRR1386426/SRR1386426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUHK-04A-01D_TARGET-20-PASUHK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASUHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUHK-14A-01D	DNA	EFO	SRS636008	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUHK-14A-01D A42616 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42616	SRX593978	"Specific Capture analysis of normal sample TARGET-20-PASUHK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASUHK-14A-01D A42616 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42616_1_lane_dupsFlagged.bam	SRR1386426	@dbgap@:reads/SRP012000/SRS636008/SRX593978/SRR1386426/SRR1386426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUHK-09A-01D_TARGET-20-PASUHK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASUHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUHK-14A-01D	DNA	EFO	SRS636008	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUHK-14A-01D A42616 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42616	SRX593978	"Specific Capture analysis of normal sample TARGET-20-PASUHK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASUHK-14A-01D A42616 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42616_1_lane_dupsFlagged.bam	SRR1386426	@dbgap@:reads/SRP012000/SRS636008/SRX593978/SRR1386426/SRR1386426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUHK-09A-01D_TARGET-20-PASUHK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASULX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASULX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASULX-09A-01D	DNA	EFO	SRS633932	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASULX-09A-01D A41430 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41430	SRX588537	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASULX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASULX-09A-01D A41430 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41430_1_lane_dupsFlagged.bam	SRR1374829	@dbgap@:reads/SRP012000/SRS633932/SRX588537/SRR1374829/SRR1374829.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASULX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASULX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASULX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASULX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASULX-09A-01D	DNA	EFO	SRS633932	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASULX-09A-01D A41430 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41430	SRX588537	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASULX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASULX-09A-01D A41430 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41430_1_lane_dupsFlagged.bam	SRR1374829	@dbgap@:reads/SRP012000/SRS633932/SRX588537/SRR1374829/SRR1374829.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASULX-09A-01D_TARGET-20-PASULX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASULX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASULX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASULX-09A-01D	DNA	EFO	SRS633932	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASULX-09A-01D A41430 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41430	SRX588537	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASULX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASULX-09A-01D A41430 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41430_1_lane_dupsFlagged.bam	SRR1374829	@dbgap@:reads/SRP012000/SRS633932/SRX588537/SRR1374829/SRR1374829.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASULX-09A-01D_TARGET-20-PASULX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASULX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASULX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASULX-14A-01D	DNA	EFO	SRS635650	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASULX-14A-01D A41669 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41669	SRX593474	"Specific Capture analysis of normal sample TARGET-20-PASULX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASULX-14A-01D A41669 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41669_1_lane_dupsFlagged.bam	SRR1385991	@dbgap@:reads/SRP012000/SRS635650/SRX593474/SRR1385991/SRR1385991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASULX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASULX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASULX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASULX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASULX-14A-01D	DNA	EFO	SRS635650	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASULX-14A-01D A41669 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41669	SRX593474	"Specific Capture analysis of normal sample TARGET-20-PASULX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASULX-14A-01D A41669 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41669_1_lane_dupsFlagged.bam	SRR1385991	@dbgap@:reads/SRP012000/SRS635650/SRX593474/SRR1385991/SRR1385991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASULX-09A-01D_TARGET-20-PASULX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASULX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASULX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASULX-14A-01D	DNA	EFO	SRS635650	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASULX-14A-01D A41669 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41669	SRX593474	"Specific Capture analysis of normal sample TARGET-20-PASULX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASULX-14A-01D A41669 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41669_1_lane_dupsFlagged.bam	SRR1385991	@dbgap@:reads/SRP012000/SRS635650/SRX593474/SRR1385991/SRR1385991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASULX-09A-01D_TARGET-20-PASULX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUMD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUMD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUMD-04A-01D	DNA	EFO	SRS637316	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUMD-04A-01D A42198 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42198	SRX597687	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUMD-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASUMD-04A-01D A42198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42198_1_lane_dupsFlagged.bam	SRR1395034	@dbgap@:reads/SRP012000/SRS637316/SRX597687/SRR1395034/SRR1395034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASUMD-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASUMD-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASUMD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUMD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUMD-04A-01D	DNA	EFO	SRS637316	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUMD-04A-01D A42198 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42198	SRX597687	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUMD-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASUMD-04A-01D A42198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42198_1_lane_dupsFlagged.bam	SRR1395034	@dbgap@:reads/SRP012000/SRS637316/SRX597687/SRR1395034/SRR1395034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUMD-04A-01D_TARGET-20-PASUMD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUMD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUMD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUMD-04A-01D	DNA	EFO	SRS637316	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUMD-04A-01D A42198 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42198	SRX597687	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUMD-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASUMD-04A-01D A42198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42198_1_lane_dupsFlagged.bam	SRR1395034	@dbgap@:reads/SRP012000/SRS637316/SRX597687/SRR1395034/SRR1395034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUMD-04A-01D_TARGET-20-PASUMD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUMD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUMD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUMD-09A-01D	DNA	EFO	SRS635550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUMD-09A-01D A41830 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41830	SRX593350	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUMD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASUMD-09A-01D A41830 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41830_1_lane_dupsFlagged.bam	SRR1385808	@dbgap@:reads/SRP012000/SRS635550/SRX593350/SRR1385808/SRR1385808.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASUMD-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASUMD-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASUMD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUMD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUMD-09A-01D	DNA	EFO	SRS635550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUMD-09A-01D A41830 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41830	SRX593350	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUMD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASUMD-09A-01D A41830 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41830_1_lane_dupsFlagged.bam	SRR1385808	@dbgap@:reads/SRP012000/SRS635550/SRX593350/SRR1385808/SRR1385808.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUMD-09A-01D_TARGET-20-PASUMD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUMD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUMD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUMD-09A-01D	DNA	EFO	SRS635550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUMD-09A-01D A41830 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41830	SRX593350	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUMD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASUMD-09A-01D A41830 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41830_1_lane_dupsFlagged.bam	SRR1385808	@dbgap@:reads/SRP012000/SRS635550/SRX593350/SRR1385808/SRR1385808.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUMD-09A-01D_TARGET-20-PASUMD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUMD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUMD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUMD-14A-01D	DNA	EFO	SRS635786	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUMD-14A-01D A42319 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42319	SRX593626	"Specific Capture analysis of normal sample TARGET-20-PASUMD-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASUMD-14A-01D A42319 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42319_1_lane_dupsFlagged.bam	SRR1386071	@dbgap@:reads/SRP012000/SRS635786/SRX593626/SRR1386071/SRR1386071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASUMD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASUMD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASUMD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUMD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUMD-14A-01D	DNA	EFO	SRS635786	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUMD-14A-01D A42319 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42319	SRX593626	"Specific Capture analysis of normal sample TARGET-20-PASUMD-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASUMD-14A-01D A42319 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42319_1_lane_dupsFlagged.bam	SRR1386071	@dbgap@:reads/SRP012000/SRS635786/SRX593626/SRR1386071/SRR1386071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUMD-04A-01D_TARGET-20-PASUMD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUMD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUMD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUMD-14A-01D	DNA	EFO	SRS635786	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUMD-14A-01D A42319 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42319	SRX593626	"Specific Capture analysis of normal sample TARGET-20-PASUMD-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASUMD-14A-01D A42319 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42319_1_lane_dupsFlagged.bam	SRR1386071	@dbgap@:reads/SRP012000/SRS635786/SRX593626/SRR1386071/SRR1386071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUMD-04A-01D_TARGET-20-PASUMD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUMD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUMD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUMD-14A-01D	DNA	EFO	SRS635786	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUMD-14A-01D A42319 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42319	SRX593626	"Specific Capture analysis of normal sample TARGET-20-PASUMD-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASUMD-14A-01D A42319 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42319_1_lane_dupsFlagged.bam	SRR1386071	@dbgap@:reads/SRP012000/SRS635786/SRX593626/SRR1386071/SRR1386071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUMD-09A-01D_TARGET-20-PASUMD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUMD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUMD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUMD-14A-01D	DNA	EFO	SRS635786	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUMD-14A-01D A42319 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42319	SRX593626	"Specific Capture analysis of normal sample TARGET-20-PASUMD-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASUMD-14A-01D A42319 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42319_1_lane_dupsFlagged.bam	SRR1386071	@dbgap@:reads/SRP012000/SRS635786/SRX593626/SRR1386071/SRR1386071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUMD-09A-01D_TARGET-20-PASUMD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASURM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASURM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASURM-03A-01D	DNA	EFO	SRS635607	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASURM-03A-01D A41939 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41939	SRX593429	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASURM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASURM-03A-01D A41939 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41939_1_lane_dupsFlagged.bam	SRR1385865	@dbgap@:reads/SRP012000/SRS635607/SRX593429/SRR1385865/SRR1385865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASURM-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASURM-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASURR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASURR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASURR-09A-01D	DNA	EFO	SRS635539	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASURR-09A-01D A41831 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41831	SRX593320	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASURR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASURR-09A-01D A41831 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41831_1_lane_dupsFlagged.bam	SRR1385849	@dbgap@:reads/SRP012000/SRS635539/SRX593320/SRR1385849/SRR1385849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASURR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASURR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASURR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASURR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASURR-09A-01D	DNA	EFO	SRS635539	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASURR-09A-01D A41831 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41831	SRX593320	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASURR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASURR-09A-01D A41831 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41831_1_lane_dupsFlagged.bam	SRR1385849	@dbgap@:reads/SRP012000/SRS635539/SRX593320/SRR1385849/SRR1385849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASURR-09A-01D_TARGET-20-PASURR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASURR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASURR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASURR-09A-01D	DNA	EFO	SRS635539	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASURR-09A-01D A41831 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A41831	SRX593320	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASURR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASURR-09A-01D A41831 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41831_1_lane_dupsFlagged.bam	SRR1385849	@dbgap@:reads/SRP012000/SRS635539/SRX593320/SRR1385849/SRR1385849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASURR-09A-01D_TARGET-20-PASURR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASURR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASURR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASURR-14A-01D	DNA	EFO	SRS635891	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASURR-14A-01D A42528 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42528	SRX593851	"Specific Capture analysis of normal sample TARGET-20-PASURR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASURR-14A-01D A42528 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42528_1_lane_dupsFlagged.bam	SRR1386358	@dbgap@:reads/SRP012000/SRS635891/SRX593851/SRR1386358/SRR1386358.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASURR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASURR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASURR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASURR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASURR-14A-01D	DNA	EFO	SRS635891	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASURR-14A-01D A42528 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42528	SRX593851	"Specific Capture analysis of normal sample TARGET-20-PASURR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASURR-14A-01D A42528 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42528_1_lane_dupsFlagged.bam	SRR1386358	@dbgap@:reads/SRP012000/SRS635891/SRX593851/SRR1386358/SRR1386358.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASURR-09A-01D_TARGET-20-PASURR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASURR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASURR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASURR-14A-01D	DNA	EFO	SRS635891	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASURR-14A-01D A42528 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42528	SRX593851	"Specific Capture analysis of normal sample TARGET-20-PASURR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASURR-14A-01D A42528 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42528_1_lane_dupsFlagged.bam	SRR1386358	@dbgap@:reads/SRP012000/SRS635891/SRX593851/SRR1386358/SRR1386358.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASURR-09A-01D_TARGET-20-PASURR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUUD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUUD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUUD-09A-01D	DNA	EFO	SRS635548	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUUD-09A-01D A41832 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41832	SRX593348	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUUD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASUUD-09A-01D A41832 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41832_1_lane_dupsFlagged.bam	SRR1385814	@dbgap@:reads/SRP012000/SRS635548/SRX593348/SRR1385814/SRR1385814.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASUUD-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASUUD-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASUUD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUUD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUUD-09A-01D	DNA	EFO	SRS635548	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUUD-09A-01D A41832 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41832	SRX593348	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUUD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASUUD-09A-01D A41832 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41832_1_lane_dupsFlagged.bam	SRR1385814	@dbgap@:reads/SRP012000/SRS635548/SRX593348/SRR1385814/SRR1385814.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUUD-09A-01D_TARGET-20-PASUUD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUUD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUUD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUUD-09A-01D	DNA	EFO	SRS635548	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUUD-09A-01D A41832 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41832	SRX593348	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUUD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASUUD-09A-01D A41832 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41832_1_lane_dupsFlagged.bam	SRR1385814	@dbgap@:reads/SRP012000/SRS635548/SRX593348/SRR1385814/SRR1385814.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUUD-09A-01D_TARGET-20-PASUUD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUUD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUUD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUUD-14A-01D	DNA	EFO	SRS635670	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUUD-14A-01D A41670 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41670	SRX593494	"Specific Capture analysis of normal sample TARGET-20-PASUUD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASUUD-14A-01D A41670 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41670_1_lane_dupsFlagged.bam	SRR1385976	@dbgap@:reads/SRP012000/SRS635670/SRX593494/SRR1385976/SRR1385976.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASUUD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASUUD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASUUD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUUD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUUD-14A-01D	DNA	EFO	SRS635670	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUUD-14A-01D A41670 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41670	SRX593494	"Specific Capture analysis of normal sample TARGET-20-PASUUD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASUUD-14A-01D A41670 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41670_1_lane_dupsFlagged.bam	SRR1385976	@dbgap@:reads/SRP012000/SRS635670/SRX593494/SRR1385976/SRR1385976.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUUD-09A-01D_TARGET-20-PASUUD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUUD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUUD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUUD-14A-01D	DNA	EFO	SRS635670	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUUD-14A-01D A41670 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41670	SRX593494	"Specific Capture analysis of normal sample TARGET-20-PASUUD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASUUD-14A-01D A41670 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41670_1_lane_dupsFlagged.bam	SRR1385976	@dbgap@:reads/SRP012000/SRS635670/SRX593494/SRR1385976/SRR1385976.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUUD-09A-01D_TARGET-20-PASUUD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUUP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUUP-09A-01D	DNA	EFO	SRS635546	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUUP-09A-01D A41834 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41834	SRX593342	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUUP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASUUP-09A-01D A41834 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41834_1_lane_dupsFlagged.bam	SRR1385792	@dbgap@:reads/SRP012000/SRS635546/SRX593342/SRR1385792/SRR1385792.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASUUP-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASUUP-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASUUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUUP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUUP-09A-01D	DNA	EFO	SRS635546	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUUP-09A-01D A41834 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41834	SRX593342	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUUP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASUUP-09A-01D A41834 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41834_1_lane_dupsFlagged.bam	SRR1385792	@dbgap@:reads/SRP012000/SRS635546/SRX593342/SRR1385792/SRR1385792.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUUP-09A-01D_TARGET-20-PASUUP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUUP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUUP-09A-01D	DNA	EFO	SRS635546	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUUP-09A-01D A41834 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41834	SRX593342	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUUP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASUUP-09A-01D A41834 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41834_1_lane_dupsFlagged.bam	SRR1385792	@dbgap@:reads/SRP012000/SRS635546/SRX593342/SRR1385792/SRR1385792.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUUP-09A-01D_TARGET-20-PASUUP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUUP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUUP-14A-01D	DNA	EFO	SRS635967	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUUP-14A-01D A42631 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42631	SRX593930	"Specific Capture analysis of normal sample TARGET-20-PASUUP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASUUP-14A-01D A42631 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42631_1_lane_dupsFlagged.bam	SRR1386494	@dbgap@:reads/SRP012000/SRS635967/SRX593930/SRR1386494/SRR1386494.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASUUP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASUUP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASUUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUUP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUUP-14A-01D	DNA	EFO	SRS635967	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUUP-14A-01D A42631 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42631	SRX593930	"Specific Capture analysis of normal sample TARGET-20-PASUUP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASUUP-14A-01D A42631 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42631_1_lane_dupsFlagged.bam	SRR1386494	@dbgap@:reads/SRP012000/SRS635967/SRX593930/SRR1386494/SRR1386494.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUUP-09A-01D_TARGET-20-PASUUP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUUP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUUP-14A-01D	DNA	EFO	SRS635967	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUUP-14A-01D A42631 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42631	SRX593930	"Specific Capture analysis of normal sample TARGET-20-PASUUP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASUUP-14A-01D A42631 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42631_1_lane_dupsFlagged.bam	SRR1386494	@dbgap@:reads/SRP012000/SRS635967/SRX593930/SRR1386494/SRR1386494.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUUP-09A-01D_TARGET-20-PASUUP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUVD-09A-01D	DNA	EFO	SRS635563	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUVD-09A-01D A41833 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41833	SRX593380	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUVD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASUVD-09A-01D A41833 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41833_1_lane_dupsFlagged.bam	SRR1385833	@dbgap@:reads/SRP012000/SRS635563/SRX593380/SRR1385833/SRR1385833.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASUVD-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASUVD-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASUVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUVD-09A-01D	DNA	EFO	SRS635563	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUVD-09A-01D A41833 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41833	SRX593380	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUVD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASUVD-09A-01D A41833 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41833_1_lane_dupsFlagged.bam	SRR1385833	@dbgap@:reads/SRP012000/SRS635563/SRX593380/SRR1385833/SRR1385833.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUVD-09A-01D_TARGET-20-PASUVD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUVD-09A-01D	DNA	EFO	SRS635563	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUVD-09A-01D A41833 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41833	SRX593380	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASUVD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASUVD-09A-01D A41833 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41833_1_lane_dupsFlagged.bam	SRR1385833	@dbgap@:reads/SRP012000/SRS635563/SRX593380/SRR1385833/SRR1385833.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUVD-09A-01D_TARGET-20-PASUVD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASUVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUVD-14A-01D	DNA	EFO	SRS635994	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUVD-14A-01D A42579 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42579	SRX593960	"Specific Capture analysis of normal sample TARGET-20-PASUVD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASUVD-14A-01D A42579 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42579_1_lane_dupsFlagged.bam	SRR1386483	@dbgap@:reads/SRP012000/SRS635994/SRX593960/SRR1386483/SRR1386483.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASUVD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASUVD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASUVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUVD-14A-01D	DNA	EFO	SRS635994	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUVD-14A-01D A42579 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42579	SRX593960	"Specific Capture analysis of normal sample TARGET-20-PASUVD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASUVD-14A-01D A42579 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42579_1_lane_dupsFlagged.bam	SRR1386483	@dbgap@:reads/SRP012000/SRS635994/SRX593960/SRR1386483/SRR1386483.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUVD-09A-01D_TARGET-20-PASUVD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASUVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASUVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUVD-14A-01D	DNA	EFO	SRS635994	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUVD-14A-01D A42579 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42579	SRX593960	"Specific Capture analysis of normal sample TARGET-20-PASUVD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASUVD-14A-01D A42579 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42579_1_lane_dupsFlagged.bam	SRR1386483	@dbgap@:reads/SRP012000/SRS635994/SRX593960/SRR1386483/SRR1386483.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASUVD-09A-01D_TARGET-20-PASUVD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVAN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVAN-03A-01D	DNA	EFO	SRS633625	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVAN-03A-01D A33412 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33412	SRX587919	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVAN-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASVAN-03A-01D A33412 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33412_1_lane_dupsFlagged.bam	SRR1373804	@dbgap@:reads/SRP012000/SRS633625/SRX587919/SRR1373804/SRR1373804.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVAN-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVAN-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASVAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVAN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVAN-03A-01D	DNA	EFO	SRS633625	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVAN-03A-01D A33412 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33412	SRX587919	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVAN-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASVAN-03A-01D A33412 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33412_1_lane_dupsFlagged.bam	SRR1373804	@dbgap@:reads/SRP012000/SRS633625/SRX587919/SRR1373804/SRR1373804.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVAN-03A-01D_TARGET-20-PASVAN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVAN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVAN-03A-01D	DNA	EFO	SRS633625	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVAN-03A-01D A33412 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33412	SRX587919	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVAN-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASVAN-03A-01D A33412 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33412_1_lane_dupsFlagged.bam	SRR1373804	@dbgap@:reads/SRP012000/SRS633625/SRX587919/SRR1373804/SRR1373804.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVAN-03A-01D_TARGET-20-PASVAN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVAN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVAN-04A-01D	DNA	EFO	SRS637324	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVAN-04A-01D A42260 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42260	SRX597703	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVAN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASVAN-04A-01D A42260 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42260_1_lane_dupsFlagged.bam	SRR1395024	@dbgap@:reads/SRP012000/SRS637324/SRX597703/SRR1395024/SRR1395024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVAN-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVAN-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASVAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVAN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVAN-04A-01D	DNA	EFO	SRS637324	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVAN-04A-01D A42260 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42260	SRX597703	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVAN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASVAN-04A-01D A42260 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42260_1_lane_dupsFlagged.bam	SRR1395024	@dbgap@:reads/SRP012000/SRS637324/SRX597703/SRR1395024/SRR1395024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVAN-04A-01D_TARGET-20-PASVAN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVAN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVAN-04A-01D	DNA	EFO	SRS637324	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVAN-04A-01D A42260 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42260	SRX597703	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVAN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASVAN-04A-01D A42260 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42260_1_lane_dupsFlagged.bam	SRR1395024	@dbgap@:reads/SRP012000/SRS637324/SRX597703/SRR1395024/SRR1395024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVAN-04A-01D_TARGET-20-PASVAN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVAN-14A-01D	DNA	EFO	SRS635788	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVAN-14A-01D A42347 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42347	SRX593629	"Specific Capture analysis of normal sample TARGET-20-PASVAN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASVAN-14A-01D A42347 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42347_1_lane_dupsFlagged.bam	SRR1386025	@dbgap@:reads/SRP012000/SRS635788/SRX593629/SRR1386025/SRR1386025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVAN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVAN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASVAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVAN-14A-01D	DNA	EFO	SRS635788	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVAN-14A-01D A42347 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42347	SRX593629	"Specific Capture analysis of normal sample TARGET-20-PASVAN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASVAN-14A-01D A42347 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42347_1_lane_dupsFlagged.bam	SRR1386025	@dbgap@:reads/SRP012000/SRS635788/SRX593629/SRR1386025/SRR1386025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVAN-03A-01D_TARGET-20-PASVAN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVAN-14A-01D	DNA	EFO	SRS635788	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVAN-14A-01D A42347 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42347	SRX593629	"Specific Capture analysis of normal sample TARGET-20-PASVAN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASVAN-14A-01D A42347 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42347_1_lane_dupsFlagged.bam	SRR1386025	@dbgap@:reads/SRP012000/SRS635788/SRX593629/SRR1386025/SRR1386025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVAN-03A-01D_TARGET-20-PASVAN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVAN-14A-01D	DNA	EFO	SRS635788	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVAN-14A-01D A42347 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42347	SRX593629	"Specific Capture analysis of normal sample TARGET-20-PASVAN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASVAN-14A-01D A42347 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42347_1_lane_dupsFlagged.bam	SRR1386025	@dbgap@:reads/SRP012000/SRS635788/SRX593629/SRR1386025/SRR1386025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVAN-04A-01D_TARGET-20-PASVAN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVAN-14A-01D	DNA	EFO	SRS635788	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVAN-14A-01D A42347 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42347	SRX593629	"Specific Capture analysis of normal sample TARGET-20-PASVAN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASVAN-14A-01D A42347 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42347_1_lane_dupsFlagged.bam	SRR1386025	@dbgap@:reads/SRP012000/SRS635788/SRX593629/SRR1386025/SRR1386025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVAN-04A-01D_TARGET-20-PASVAN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVFG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVFG-03A-01D	DNA	EFO	SRS635553	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVFG-03A-01D A41824 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41824	SRX593354	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVFG-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASVFG-03A-01D A41824 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41824_1_lane_dupsFlagged.bam	SRR1385777	@dbgap@:reads/SRP012000/SRS635553/SRX593354/SRR1385777/SRR1385777.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVFG-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVFG-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASVFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVFG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVFG-03A-01D	DNA	EFO	SRS635553	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVFG-03A-01D A41824 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41824	SRX593354	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVFG-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASVFG-03A-01D A41824 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41824_1_lane_dupsFlagged.bam	SRR1385777	@dbgap@:reads/SRP012000/SRS635553/SRX593354/SRR1385777/SRR1385777.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVFG-03A-01D_TARGET-20-PASVFG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVFG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVFG-03A-01D	DNA	EFO	SRS635553	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVFG-03A-01D A41824 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	295	A41824	SRX593354	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVFG-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-20-PASVFG-03A-01D A41824 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41824_1_lane_dupsFlagged.bam	SRR1385777	@dbgap@:reads/SRP012000/SRS635553/SRX593354/SRR1385777/SRR1385777.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVFG-03A-01D_TARGET-20-PASVFG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVFG-14A-01D	DNA	EFO	SRS637373	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVFG-14A-01D A42855 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42855	SRX597778	"Specific Capture analysis of normal sample TARGET-20-PASVFG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASVFG-14A-01D A42855 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42855_1_lane_dupsFlagged.bam	SRR1395075	@dbgap@:reads/SRP012000/SRS637373/SRX597778/SRR1395075/SRR1395075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVFG-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVFG-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASVFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVFG-14A-01D	DNA	EFO	SRS637373	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVFG-14A-01D A42855 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42855	SRX597778	"Specific Capture analysis of normal sample TARGET-20-PASVFG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASVFG-14A-01D A42855 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42855_1_lane_dupsFlagged.bam	SRR1395075	@dbgap@:reads/SRP012000/SRS637373/SRX597778/SRR1395075/SRR1395075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVFG-03A-01D_TARGET-20-PASVFG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVFG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVFG-14A-01D	DNA	EFO	SRS637373	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVFG-14A-01D A42855 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42855	SRX597778	"Specific Capture analysis of normal sample TARGET-20-PASVFG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASVFG-14A-01D A42855 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42855_1_lane_dupsFlagged.bam	SRR1395075	@dbgap@:reads/SRP012000/SRS637373/SRX597778/SRR1395075/SRR1395075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVFG-03A-01D_TARGET-20-PASVFG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVMU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVMU-03A-01D	DNA	EFO	SRS628894	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVMU-03A-01D A32285 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32285	SRX574950	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVMU-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASVMU-03A-01D A32285 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32285_1_lane_dupsFlagged.bam	SRR1346167	@dbgap@:reads/SRP012000/SRS628894/SRX574950/SRR1346167/SRR1346167.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVMU-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVMU-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASVMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVMU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVMU-03A-01D	DNA	EFO	SRS628894	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVMU-03A-01D A32285 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32285	SRX574950	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVMU-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASVMU-03A-01D A32285 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32285_1_lane_dupsFlagged.bam	SRR1346167	@dbgap@:reads/SRP012000/SRS628894/SRX574950/SRR1346167/SRR1346167.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVMU-03A-01D_TARGET-20-PASVMU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVMU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVMU-03A-01D	DNA	EFO	SRS628894	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVMU-03A-01D A32285 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32285	SRX574950	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVMU-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASVMU-03A-01D A32285 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32285_1_lane_dupsFlagged.bam	SRR1346167	@dbgap@:reads/SRP012000/SRS628894/SRX574950/SRR1346167/SRR1346167.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVMU-03A-01D_TARGET-20-PASVMU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVMU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVMU-14A-01D	DNA	EFO	SRS635964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVMU-14A-01D A42581 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42581	SRX593927	"Specific Capture analysis of normal sample TARGET-20-PASVMU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASVMU-14A-01D A42581 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42581_1_lane_dupsFlagged.bam	SRR1386485	@dbgap@:reads/SRP012000/SRS635964/SRX593927/SRR1386485/SRR1386485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVMU-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVMU-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASVMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVMU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVMU-14A-01D	DNA	EFO	SRS635964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVMU-14A-01D A42581 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42581	SRX593927	"Specific Capture analysis of normal sample TARGET-20-PASVMU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASVMU-14A-01D A42581 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42581_1_lane_dupsFlagged.bam	SRR1386485	@dbgap@:reads/SRP012000/SRS635964/SRX593927/SRR1386485/SRR1386485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVMU-03A-01D_TARGET-20-PASVMU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVMU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVMU-14A-01D	DNA	EFO	SRS635964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVMU-14A-01D A42581 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42581	SRX593927	"Specific Capture analysis of normal sample TARGET-20-PASVMU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASVMU-14A-01D A42581 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42581_1_lane_dupsFlagged.bam	SRR1386485	@dbgap@:reads/SRP012000/SRS635964/SRX593927/SRR1386485/SRR1386485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVMU-03A-01D_TARGET-20-PASVMU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVPC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVPC-09A-01D	DNA	EFO	SRS633921	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVPC-09A-01D A41432 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41432	SRX588526	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVPC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASVPC-09A-01D A41432 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41432_1_lane_dupsFlagged.bam	SRR1374825	@dbgap@:reads/SRP012000/SRS633921/SRX588526/SRR1374825/SRR1374825.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVPC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVPC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASVPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVPC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVPC-09A-01D	DNA	EFO	SRS633921	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVPC-09A-01D A41432 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41432	SRX588526	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVPC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASVPC-09A-01D A41432 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41432_1_lane_dupsFlagged.bam	SRR1374825	@dbgap@:reads/SRP012000/SRS633921/SRX588526/SRR1374825/SRR1374825.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVPC-09A-01D_TARGET-20-PASVPC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVPC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVPC-09A-01D	DNA	EFO	SRS633921	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVPC-09A-01D A41432 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41432	SRX588526	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVPC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASVPC-09A-01D A41432 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41432_1_lane_dupsFlagged.bam	SRR1374825	@dbgap@:reads/SRP012000/SRS633921/SRX588526/SRR1374825/SRR1374825.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVPC-09A-01D_TARGET-20-PASVPC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVPC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVPC-14A-01D	DNA	EFO	SRS635700	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVPC-14A-01D A41694 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41694	SRX593522	"Specific Capture analysis of normal sample TARGET-20-PASVPC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASVPC-14A-01D A41694 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41694_1_lane_dupsFlagged.bam	SRR1385989	@dbgap@:reads/SRP012000/SRS635700/SRX593522/SRR1385989/SRR1385989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVPC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVPC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASVPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVPC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVPC-14A-01D	DNA	EFO	SRS635700	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVPC-14A-01D A41694 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41694	SRX593522	"Specific Capture analysis of normal sample TARGET-20-PASVPC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASVPC-14A-01D A41694 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41694_1_lane_dupsFlagged.bam	SRR1385989	@dbgap@:reads/SRP012000/SRS635700/SRX593522/SRR1385989/SRR1385989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVPC-09A-01D_TARGET-20-PASVPC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVPC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVPC-14A-01D	DNA	EFO	SRS635700	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVPC-14A-01D A41694 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41694	SRX593522	"Specific Capture analysis of normal sample TARGET-20-PASVPC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASVPC-14A-01D A41694 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41694_1_lane_dupsFlagged.bam	SRR1385989	@dbgap@:reads/SRP012000/SRS635700/SRX593522/SRR1385989/SRR1385989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVPC-09A-01D_TARGET-20-PASVPC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVPJ-09A-02D	DNA	EFO	SRS628904	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVPJ-09A-02D A32286 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32286	SRX574960	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVPJ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASVPJ-09A-02D A32286 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32286_1_lane_dupsFlagged.bam	SRR1346130	@dbgap@:reads/SRP012000/SRS628904/SRX574960/SRR1346130/SRR1346130.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVPJ-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVPJ-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASVPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVPJ-09A-02D	DNA	EFO	SRS628904	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVPJ-09A-02D A32286 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32286	SRX574960	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVPJ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASVPJ-09A-02D A32286 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32286_1_lane_dupsFlagged.bam	SRR1346130	@dbgap@:reads/SRP012000/SRS628904/SRX574960/SRR1346130/SRR1346130.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVPJ-09A-02D_TARGET-20-PASVPJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVPJ-09A-02D	DNA	EFO	SRS628904	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVPJ-09A-02D A32286 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32286	SRX574960	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVPJ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASVPJ-09A-02D A32286 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32286_1_lane_dupsFlagged.bam	SRR1346130	@dbgap@:reads/SRP012000/SRS628904/SRX574960/SRR1346130/SRR1346130.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVPJ-09A-02D_TARGET-20-PASVPJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVPJ-14A-01D	DNA	EFO	SRS636013	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVPJ-14A-01D A42618 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42618	SRX593986	"Specific Capture analysis of normal sample TARGET-20-PASVPJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASVPJ-14A-01D A42618 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42618_1_lane_dupsFlagged.bam	SRR1386454	@dbgap@:reads/SRP012000/SRS636013/SRX593986/SRR1386454/SRR1386454.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVPJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVPJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASVPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVPJ-14A-01D	DNA	EFO	SRS636013	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVPJ-14A-01D A42618 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42618	SRX593986	"Specific Capture analysis of normal sample TARGET-20-PASVPJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASVPJ-14A-01D A42618 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42618_1_lane_dupsFlagged.bam	SRR1386454	@dbgap@:reads/SRP012000/SRS636013/SRX593986/SRR1386454/SRR1386454.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVPJ-09A-02D_TARGET-20-PASVPJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVPJ-14A-01D	DNA	EFO	SRS636013	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVPJ-14A-01D A42618 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42618	SRX593986	"Specific Capture analysis of normal sample TARGET-20-PASVPJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASVPJ-14A-01D A42618 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42618_1_lane_dupsFlagged.bam	SRR1386454	@dbgap@:reads/SRP012000/SRS636013/SRX593986/SRR1386454/SRR1386454.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVPJ-09A-02D_TARGET-20-PASVPJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVSS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVSS-09A-01D	DNA	EFO	SRS633937	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVSS-09A-01D A41448 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41448	SRX588543	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVSS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASVSS-09A-01D A41448 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41448_1_lane_dupsFlagged.bam	SRR1374873	@dbgap@:reads/SRP012000/SRS633937/SRX588543/SRR1374873/SRR1374873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVSS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVSS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASVSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVSS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVSS-09A-01D	DNA	EFO	SRS633937	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVSS-09A-01D A41448 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41448	SRX588543	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVSS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASVSS-09A-01D A41448 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41448_1_lane_dupsFlagged.bam	SRR1374873	@dbgap@:reads/SRP012000/SRS633937/SRX588543/SRR1374873/SRR1374873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVSS-09A-01D_TARGET-20-PASVSS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVSS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVSS-09A-01D	DNA	EFO	SRS633937	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVSS-09A-01D A41448 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41448	SRX588543	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVSS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASVSS-09A-01D A41448 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41448_1_lane_dupsFlagged.bam	SRR1374873	@dbgap@:reads/SRP012000/SRS633937/SRX588543/SRR1374873/SRR1374873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVSS-09A-01D_TARGET-20-PASVSS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVSS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVSS-14A-01D	DNA	EFO	SRS637436	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVSS-14A-01D A42854 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42854	SRX597848	"Specific Capture analysis of normal sample TARGET-20-PASVSS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASVSS-14A-01D A42854 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42854_1_lane_dupsFlagged.bam	SRR1395104	@dbgap@:reads/SRP012000/SRS637436/SRX597848/SRR1395104/SRR1395104.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVSS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVSS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASVSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVSS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVSS-14A-01D	DNA	EFO	SRS637436	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVSS-14A-01D A42854 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42854	SRX597848	"Specific Capture analysis of normal sample TARGET-20-PASVSS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASVSS-14A-01D A42854 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42854_1_lane_dupsFlagged.bam	SRR1395104	@dbgap@:reads/SRP012000/SRS637436/SRX597848/SRR1395104/SRR1395104.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVSS-09A-01D_TARGET-20-PASVSS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVSS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVSS-14A-01D	DNA	EFO	SRS637436	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVSS-14A-01D A42854 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42854	SRX597848	"Specific Capture analysis of normal sample TARGET-20-PASVSS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASVSS-14A-01D A42854 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42854_1_lane_dupsFlagged.bam	SRR1395104	@dbgap@:reads/SRP012000/SRS637436/SRX597848/SRR1395104/SRR1395104.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVSS-09A-01D_TARGET-20-PASVSS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVTP-09A-01D	DNA	EFO	SRS628948	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVTP-09A-01D A32342 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32342	SRX575005	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVTP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASVTP-09A-01D A32342 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32342_1_lane_dupsFlagged.bam	SRR1346158	@dbgap@:reads/SRP012000/SRS628948/SRX575005/SRR1346158/SRR1346158.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVTP-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVTP-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASVTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVTP-09A-01D	DNA	EFO	SRS628948	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVTP-09A-01D A32342 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32342	SRX575005	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVTP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASVTP-09A-01D A32342 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32342_1_lane_dupsFlagged.bam	SRR1346158	@dbgap@:reads/SRP012000/SRS628948/SRX575005/SRR1346158/SRR1346158.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVTP-09A-01D_TARGET-20-PASVTP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVTP-09A-01D	DNA	EFO	SRS628948	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVTP-09A-01D A32342 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32342	SRX575005	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVTP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASVTP-09A-01D A32342 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32342_1_lane_dupsFlagged.bam	SRR1346158	@dbgap@:reads/SRP012000/SRS628948/SRX575005/SRR1346158/SRR1346158.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVTP-09A-01D_TARGET-20-PASVTP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVTP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVTP-14A-01D	DNA	EFO	SRS635956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVTP-14A-01D A42551 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42551	SRX593916	"Specific Capture analysis of normal sample TARGET-20-PASVTP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASVTP-14A-01D A42551 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42551_1_lane_dupsFlagged.bam	SRR1386373	@dbgap@:reads/SRP012000/SRS635956/SRX593916/SRR1386373/SRR1386373.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVTP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVTP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASVTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVTP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVTP-14A-01D	DNA	EFO	SRS635956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVTP-14A-01D A42551 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42551	SRX593916	"Specific Capture analysis of normal sample TARGET-20-PASVTP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASVTP-14A-01D A42551 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42551_1_lane_dupsFlagged.bam	SRR1386373	@dbgap@:reads/SRP012000/SRS635956/SRX593916/SRR1386373/SRR1386373.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVTP-09A-01D_TARGET-20-PASVTP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVTP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVTP-14A-01D	DNA	EFO	SRS635956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVTP-14A-01D A42551 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42551	SRX593916	"Specific Capture analysis of normal sample TARGET-20-PASVTP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASVTP-14A-01D A42551 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42551_1_lane_dupsFlagged.bam	SRR1386373	@dbgap@:reads/SRP012000/SRS635956/SRX593916/SRR1386373/SRR1386373.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVTP-09A-01D_TARGET-20-PASVTP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVVM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVM-09A-01D	DNA	EFO	SRS633954	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVM-09A-01D A41451 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41451	SRX588560	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVVM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASVVM-09A-01D A41451 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41451_1_lane_dupsFlagged.bam	SRR1374850	@dbgap@:reads/SRP012000/SRS633954/SRX588560/SRR1374850/SRR1374850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVVM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVVM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-02D	DNA	EFO	SRS637527	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-04A-02D A42722 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42722	SRX597965	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVVS-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASVVS-04A-02D A42722 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42722_1_lane_dupsFlagged.bam	SRR1395267	@dbgap@:reads/SRP012000/SRS637527/SRX597965/SRR1395267/SRR1395267.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVVS-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVVS-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-02D	DNA	EFO	SRS637527	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-04A-02D A42722 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42722	SRX597965	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVVS-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASVVS-04A-02D A42722 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42722_1_lane_dupsFlagged.bam	SRR1395267	@dbgap@:reads/SRP012000/SRS637527/SRX597965/SRR1395267/SRR1395267.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVVS-04A-02D_TARGET-20-PASVVS-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-02D	DNA	EFO	SRS637527	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-04A-02D A42722 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42722	SRX597965	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVVS-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASVVS-04A-02D A42722 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42722_1_lane_dupsFlagged.bam	SRR1395267	@dbgap@:reads/SRP012000/SRS637527/SRX597965/SRR1395267/SRR1395267.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVVS-04A-02D_TARGET-20-PASVVS-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-02D	DNA	EFO	SRS628925	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-09A-02D A32343 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32343	SRX574981	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVVS-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASVVS-09A-02D A32343 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32343_1_lane_dupsFlagged.bam	SRR1346194	@dbgap@:reads/SRP012000/SRS628925/SRX574981/SRR1346194/SRR1346194.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVVS-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVVS-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-02D	DNA	EFO	SRS628925	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-09A-02D A32343 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32343	SRX574981	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVVS-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASVVS-09A-02D A32343 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32343_1_lane_dupsFlagged.bam	SRR1346194	@dbgap@:reads/SRP012000/SRS628925/SRX574981/SRR1346194/SRR1346194.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVVS-09A-02D_TARGET-20-PASVVS-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-02D	DNA	EFO	SRS628925	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-09A-02D A32343 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32343	SRX574981	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVVS-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASVVS-09A-02D A32343 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32343_1_lane_dupsFlagged.bam	SRR1346194	@dbgap@:reads/SRP012000/SRS628925/SRX574981/SRR1346194/SRR1346194.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVVS-09A-02D_TARGET-20-PASVVS-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-02D	DNA	EFO	SRS637388	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-14A-02D A42856 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42856	SRX597792	"Specific Capture analysis of normal sample TARGET-20-PASVVS-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASVVS-14A-02D A42856 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42856_1_lane_dupsFlagged.bam	SRR1395073	@dbgap@:reads/SRP012000/SRS637388/SRX597792/SRR1395073/SRR1395073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVVS-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVVS-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-02D	DNA	EFO	SRS637388	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-14A-02D A42856 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42856	SRX597792	"Specific Capture analysis of normal sample TARGET-20-PASVVS-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASVVS-14A-02D A42856 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42856_1_lane_dupsFlagged.bam	SRR1395073	@dbgap@:reads/SRP012000/SRS637388/SRX597792/SRR1395073/SRR1395073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVVS-04A-02D_TARGET-20-PASVVS-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-02D	DNA	EFO	SRS637388	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-14A-02D A42856 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42856	SRX597792	"Specific Capture analysis of normal sample TARGET-20-PASVVS-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASVVS-14A-02D A42856 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42856_1_lane_dupsFlagged.bam	SRR1395073	@dbgap@:reads/SRP012000/SRS637388/SRX597792/SRR1395073/SRR1395073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVVS-04A-02D_TARGET-20-PASVVS-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-02D	DNA	EFO	SRS637388	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-14A-02D A42856 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42856	SRX597792	"Specific Capture analysis of normal sample TARGET-20-PASVVS-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASVVS-14A-02D A42856 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42856_1_lane_dupsFlagged.bam	SRR1395073	@dbgap@:reads/SRP012000/SRS637388/SRX597792/SRR1395073/SRR1395073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVVS-09A-02D_TARGET-20-PASVVS-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-14A-02D	DNA	EFO	SRS637388	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-14A-02D A42856 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42856	SRX597792	"Specific Capture analysis of normal sample TARGET-20-PASVVS-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASVVS-14A-02D A42856 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42856_1_lane_dupsFlagged.bam	SRR1395073	@dbgap@:reads/SRP012000/SRS637388/SRX597792/SRR1395073/SRR1395073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVVS-09A-02D_TARGET-20-PASVVS-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVWE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVWE-09A-01D	DNA	EFO	SRS629196	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVWE-09A-01D A33281 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33281	SRX575252	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVWE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASVWE-09A-01D A33281 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33281_1_lane_dupsFlagged.bam	SRR1346465	@dbgap@:reads/SRP012000/SRS629196/SRX575252/SRR1346465/SRR1346465.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVWE-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVWE-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASVWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVWE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVWE-09A-01D	DNA	EFO	SRS629196	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVWE-09A-01D A33281 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33281	SRX575252	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVWE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASVWE-09A-01D A33281 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33281_1_lane_dupsFlagged.bam	SRR1346465	@dbgap@:reads/SRP012000/SRS629196/SRX575252/SRR1346465/SRR1346465.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVWE-09A-01D_TARGET-20-PASVWE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVWE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVWE-09A-01D	DNA	EFO	SRS629196	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVWE-09A-01D A33281 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33281	SRX575252	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVWE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASVWE-09A-01D A33281 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33281_1_lane_dupsFlagged.bam	SRR1346465	@dbgap@:reads/SRP012000/SRS629196/SRX575252/SRR1346465/SRR1346465.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVWE-09A-01D_TARGET-20-PASVWE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVWE-14A-01D	DNA	EFO	SRS636011	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVWE-14A-01D A42574 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42574	SRX593982	"Specific Capture analysis of normal sample TARGET-20-PASVWE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASVWE-14A-01D A42574 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42574_1_lane_dupsFlagged.bam	SRR1386479	@dbgap@:reads/SRP012000/SRS636011/SRX593982/SRR1386479/SRR1386479.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVWE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVWE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASVWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVWE-14A-01D	DNA	EFO	SRS636011	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVWE-14A-01D A42574 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42574	SRX593982	"Specific Capture analysis of normal sample TARGET-20-PASVWE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASVWE-14A-01D A42574 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42574_1_lane_dupsFlagged.bam	SRR1386479	@dbgap@:reads/SRP012000/SRS636011/SRX593982/SRR1386479/SRR1386479.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVWE-09A-01D_TARGET-20-PASVWE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVWE-14A-01D	DNA	EFO	SRS636011	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVWE-14A-01D A42574 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42574	SRX593982	"Specific Capture analysis of normal sample TARGET-20-PASVWE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASVWE-14A-01D A42574 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42574_1_lane_dupsFlagged.bam	SRR1386479	@dbgap@:reads/SRP012000/SRS636011/SRX593982/SRR1386479/SRR1386479.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVWE-09A-01D_TARGET-20-PASVWE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVWW-09A-01D	DNA	EFO	SRS633906	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVWW-09A-01D A41450 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41450	SRX588511	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVWW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASVWW-09A-01D A41450 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41450_1_lane_dupsFlagged.bam	SRR1374828	@dbgap@:reads/SRP012000/SRS633906/SRX588511/SRR1374828/SRR1374828.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVWW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVWW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-03D	DNA	EFO	SRS637566	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYA-04A-03D A42750 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42750	SRX598006	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVYA-04A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASVYA-04A-03D A42750 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42750_1_lane_dupsFlagged.bam	SRR1395229	@dbgap@:reads/SRP012000/SRS637566/SRX598006/SRR1395229/SRR1395229.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVYA-04A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVYA-04A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-02D	DNA	EFO	SRS628914	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYA-09A-02D A32287 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32287	SRX574970	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVYA-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASVYA-09A-02D A32287 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32287_1_lane_dupsFlagged.bam	SRR1346180	@dbgap@:reads/SRP012000/SRS628914/SRX574970/SRR1346180/SRR1346180.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVYA-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVYA-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01D	DNA	EFO	SRS301156	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYL-09A-01D A31269 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31269	SRX573339	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVYL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASVYL-09A-01D A31269 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31269_1_lane_dupsFlagged.bam	SRR1342694	@dbgap@:reads/SRP012000/SRS301156/SRX573339/SRR1342694/SRR1342694.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVYL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVYL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01D	DNA	EFO	SRS301156	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYL-09A-01D A31269 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31269	SRX573339	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVYL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASVYL-09A-01D A31269 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31269_1_lane_dupsFlagged.bam	SRR1342694	@dbgap@:reads/SRP012000/SRS301156/SRX573339/SRR1342694/SRR1342694.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVYL-09A-01D_TARGET-20-PASVYL-10A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01D	DNA	EFO	SRS301156	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYL-09A-01D A31269 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31269	SRX573339	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVYL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASVYL-09A-01D A31269 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31269_1_lane_dupsFlagged.bam	SRR1342694	@dbgap@:reads/SRP012000/SRS301156/SRX573339/SRR1342694/SRR1342694.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVYL-09A-01D_TARGET-20-PASVYL-10A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-03D	DNA	EFO	SRS637368	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYL-10A-03D A42853 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42853	SRX597774	"Specific Capture analysis of normal sample TARGET-20-PASVYL-10A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASVYL-10A-03D A42853 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42853_1_lane_dupsFlagged.bam	SRR1395097	@dbgap@:reads/SRP012000/SRS637368/SRX597774/SRR1395097/SRR1395097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVYL-10A-03D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVYL-10A-03D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-03D	DNA	EFO	SRS637368	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYL-10A-03D A42853 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42853	SRX597774	"Specific Capture analysis of normal sample TARGET-20-PASVYL-10A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASVYL-10A-03D A42853 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42853_1_lane_dupsFlagged.bam	SRR1395097	@dbgap@:reads/SRP012000/SRS637368/SRX597774/SRR1395097/SRR1395097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVYL-09A-01D_TARGET-20-PASVYL-10A-03D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-10A-03D	DNA	EFO	SRS637368	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYL-10A-03D A42853 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42853	SRX597774	"Specific Capture analysis of normal sample TARGET-20-PASVYL-10A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASVYL-10A-03D A42853 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42853_1_lane_dupsFlagged.bam	SRR1395097	@dbgap@:reads/SRP012000/SRS637368/SRX597774/SRR1395097/SRR1395097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVYL-09A-01D_TARGET-20-PASVYL-10A-03D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVZC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVZC-04A-01D	DNA	EFO	SRS637350	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVZC-04A-01D A42254 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42254	SRX597751	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVZC-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASVZC-04A-01D A42254 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42254_1_lane_dupsFlagged.bam	SRR1394979	@dbgap@:reads/SRP012000/SRS637350/SRX597751/SRR1394979/SRR1394979.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVZC-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVZC-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASVZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVZC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVZC-04A-01D	DNA	EFO	SRS637350	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVZC-04A-01D A42254 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42254	SRX597751	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVZC-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASVZC-04A-01D A42254 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42254_1_lane_dupsFlagged.bam	SRR1394979	@dbgap@:reads/SRP012000/SRS637350/SRX597751/SRR1394979/SRR1394979.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVZC-04A-01D_TARGET-20-PASVZC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVZC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVZC-04A-01D	DNA	EFO	SRS637350	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVZC-04A-01D A42254 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42254	SRX597751	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVZC-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASVZC-04A-01D A42254 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42254_1_lane_dupsFlagged.bam	SRR1394979	@dbgap@:reads/SRP012000/SRS637350/SRX597751/SRR1394979/SRR1394979.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVZC-04A-01D_TARGET-20-PASVZC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVZC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVZC-09A-01D	DNA	EFO	SRS633693	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVZC-09A-01D A33447 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33447	SRX587987	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVZC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASVZC-09A-01D A33447 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33447_1_lane_dupsFlagged.bam	SRR1373837	@dbgap@:reads/SRP012000/SRS633693/SRX587987/SRR1373837/SRR1373837.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVZC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVZC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASVZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVZC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVZC-09A-01D	DNA	EFO	SRS633693	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVZC-09A-01D A33447 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33447	SRX587987	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVZC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASVZC-09A-01D A33447 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33447_1_lane_dupsFlagged.bam	SRR1373837	@dbgap@:reads/SRP012000/SRS633693/SRX587987/SRR1373837/SRR1373837.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVZC-09A-01D_TARGET-20-PASVZC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVZC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVZC-09A-01D	DNA	EFO	SRS633693	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVZC-09A-01D A33447 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33447	SRX587987	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASVZC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-20-PASVZC-09A-01D A33447 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33447_1_lane_dupsFlagged.bam	SRR1373837	@dbgap@:reads/SRP012000/SRS633693/SRX587987/SRR1373837/SRR1373837.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVZC-09A-01D_TARGET-20-PASVZC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVZC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVZC-14A-01D	DNA	EFO	SRS637470	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVZC-14A-01D A42931 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42931	SRX597893	"Specific Capture analysis of normal sample TARGET-20-PASVZC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASVZC-14A-01D A42931 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42931_1_lane_dupsFlagged.bam	SRR1395163	@dbgap@:reads/SRP012000/SRS637470/SRX597893/SRR1395163/SRR1395163.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASVZC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASVZC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASVZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVZC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVZC-14A-01D	DNA	EFO	SRS637470	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVZC-14A-01D A42931 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42931	SRX597893	"Specific Capture analysis of normal sample TARGET-20-PASVZC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASVZC-14A-01D A42931 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42931_1_lane_dupsFlagged.bam	SRR1395163	@dbgap@:reads/SRP012000/SRS637470/SRX597893/SRR1395163/SRR1395163.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVZC-04A-01D_TARGET-20-PASVZC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVZC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVZC-14A-01D	DNA	EFO	SRS637470	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVZC-14A-01D A42931 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42931	SRX597893	"Specific Capture analysis of normal sample TARGET-20-PASVZC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASVZC-14A-01D A42931 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42931_1_lane_dupsFlagged.bam	SRR1395163	@dbgap@:reads/SRP012000/SRS637470/SRX597893/SRR1395163/SRR1395163.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVZC-04A-01D_TARGET-20-PASVZC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASVZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVZC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVZC-14A-01D	DNA	EFO	SRS637470	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVZC-14A-01D A42931 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42931	SRX597893	"Specific Capture analysis of normal sample TARGET-20-PASVZC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASVZC-14A-01D A42931 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42931_1_lane_dupsFlagged.bam	SRR1395163	@dbgap@:reads/SRP012000/SRS637470/SRX597893/SRR1395163/SRR1395163.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVZC-09A-01D_TARGET-20-PASVZC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASVZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASVZC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVZC-14A-01D	DNA	EFO	SRS637470	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVZC-14A-01D A42931 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42931	SRX597893	"Specific Capture analysis of normal sample TARGET-20-PASVZC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASVZC-14A-01D A42931 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42931_1_lane_dupsFlagged.bam	SRR1395163	@dbgap@:reads/SRP012000/SRS637470/SRX597893/SRR1395163/SRR1395163.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASVZC-09A-01D_TARGET-20-PASVZC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-01D	DNA	EFO	SRS270790	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-04A-01D A42262 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42262	SRX597699	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWAJ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASWAJ-04A-01D A42262 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42262_1_lane_dupsFlagged.bam	SRR1394957	@dbgap@:reads/SRP012000/SRS270790/SRX597699/SRR1394957/SRR1394957.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWAJ-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWAJ-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-01D	DNA	EFO	SRS270790	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-04A-01D A42262 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42262	SRX597699	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWAJ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASWAJ-04A-01D A42262 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42262_1_lane_dupsFlagged.bam	SRR1394957	@dbgap@:reads/SRP012000/SRS270790/SRX597699/SRR1394957/SRR1394957.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWAJ-04A-01D_TARGET-20-PASWAJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-01D	DNA	EFO	SRS270790	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-04A-01D A42262 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42262	SRX597699	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWAJ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASWAJ-04A-01D A42262 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42262_1_lane_dupsFlagged.bam	SRR1394957	@dbgap@:reads/SRP012000/SRS270790/SRX597699/SRR1394957/SRR1394957.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWAJ-04A-01D_TARGET-20-PASWAJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-03D	DNA	EFO	SRS628946	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-09A-03D A32288 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32288	SRX575003	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWAJ-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASWAJ-09A-03D A32288 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32288_1_lane_dupsFlagged.bam	SRR1346146	@dbgap@:reads/SRP012000/SRS628946/SRX575003/SRR1346146/SRR1346146.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWAJ-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWAJ-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-03D	DNA	EFO	SRS628946	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-09A-03D A32288 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32288	SRX575003	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWAJ-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASWAJ-09A-03D A32288 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32288_1_lane_dupsFlagged.bam	SRR1346146	@dbgap@:reads/SRP012000/SRS628946/SRX575003/SRR1346146/SRR1346146.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWAJ-09A-03D_TARGET-20-PASWAJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-03D	DNA	EFO	SRS628946	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-09A-03D A32288 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32288	SRX575003	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWAJ-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASWAJ-09A-03D A32288 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32288_1_lane_dupsFlagged.bam	SRR1346146	@dbgap@:reads/SRP012000/SRS628946/SRX575003/SRR1346146/SRR1346146.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWAJ-09A-03D_TARGET-20-PASWAJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-01D	DNA	EFO	SRS635677	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-14A-01D A41671 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41671	SRX593501	"Specific Capture analysis of normal sample TARGET-20-PASWAJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASWAJ-14A-01D A41671 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41671_1_lane_dupsFlagged.bam	SRR1385949	@dbgap@:reads/SRP012000/SRS635677/SRX593501/SRR1385949/SRR1385949.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWAJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWAJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-01D	DNA	EFO	SRS635677	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-14A-01D A41671 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41671	SRX593501	"Specific Capture analysis of normal sample TARGET-20-PASWAJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASWAJ-14A-01D A41671 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41671_1_lane_dupsFlagged.bam	SRR1385949	@dbgap@:reads/SRP012000/SRS635677/SRX593501/SRR1385949/SRR1385949.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWAJ-04A-01D_TARGET-20-PASWAJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-01D	DNA	EFO	SRS635677	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-14A-01D A41671 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41671	SRX593501	"Specific Capture analysis of normal sample TARGET-20-PASWAJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASWAJ-14A-01D A41671 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41671_1_lane_dupsFlagged.bam	SRR1385949	@dbgap@:reads/SRP012000/SRS635677/SRX593501/SRR1385949/SRR1385949.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWAJ-04A-01D_TARGET-20-PASWAJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-01D	DNA	EFO	SRS635677	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-14A-01D A41671 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41671	SRX593501	"Specific Capture analysis of normal sample TARGET-20-PASWAJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASWAJ-14A-01D A41671 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41671_1_lane_dupsFlagged.bam	SRR1385949	@dbgap@:reads/SRP012000/SRS635677/SRX593501/SRR1385949/SRR1385949.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWAJ-09A-03D_TARGET-20-PASWAJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-14A-01D	DNA	EFO	SRS635677	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-14A-01D A41671 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41671	SRX593501	"Specific Capture analysis of normal sample TARGET-20-PASWAJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASWAJ-14A-01D A41671 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41671_1_lane_dupsFlagged.bam	SRR1385949	@dbgap@:reads/SRP012000/SRS635677/SRX593501/SRR1385949/SRR1385949.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWAJ-09A-03D_TARGET-20-PASWAJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01D	DNA	EFO	SRS489827	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAT-09A-01D A31189 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31189	SRX573403	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWAT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASWAT-09A-01D A31189 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31189_1_lane_dupsFlagged.bam	SRR1342629	@dbgap@:reads/SRP012000/SRS489827/SRX573403/SRR1342629/SRR1342629.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWAT-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWAT-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASWER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWER-09A-01D	DNA	EFO	SRS629145	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWER-09A-01D A33282 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33282	SRX575201	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWER-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASWER-09A-01D A33282 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33282_1_lane_dupsFlagged.bam	SRR1346487	@dbgap@:reads/SRP012000/SRS629145/SRX575201/SRR1346487/SRR1346487.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWER-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWER-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASWER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWER-09A-01D	DNA	EFO	SRS629145	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWER-09A-01D A33282 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33282	SRX575201	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWER-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASWER-09A-01D A33282 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33282_1_lane_dupsFlagged.bam	SRR1346487	@dbgap@:reads/SRP012000/SRS629145/SRX575201/SRR1346487/SRR1346487.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWER-09A-01D_TARGET-20-PASWER-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWER-09A-01D	DNA	EFO	SRS629145	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWER-09A-01D A33282 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33282	SRX575201	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWER-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASWER-09A-01D A33282 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33282_1_lane_dupsFlagged.bam	SRR1346487	@dbgap@:reads/SRP012000/SRS629145/SRX575201/SRR1346487/SRR1346487.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWER-09A-01D_TARGET-20-PASWER-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWER-14A-01D	DNA	EFO	SRS635935	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWER-14A-01D A42513 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42513	SRX593894	"Specific Capture analysis of normal sample TARGET-20-PASWER-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASWER-14A-01D A42513 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42513_1_lane_dupsFlagged.bam	SRR1386411	@dbgap@:reads/SRP012000/SRS635935/SRX593894/SRR1386411/SRR1386411.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWER-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWER-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASWER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWER-14A-01D	DNA	EFO	SRS635935	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWER-14A-01D A42513 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42513	SRX593894	"Specific Capture analysis of normal sample TARGET-20-PASWER-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASWER-14A-01D A42513 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42513_1_lane_dupsFlagged.bam	SRR1386411	@dbgap@:reads/SRP012000/SRS635935/SRX593894/SRR1386411/SRR1386411.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWER-09A-01D_TARGET-20-PASWER-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWER-14A-01D	DNA	EFO	SRS635935	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWER-14A-01D A42513 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42513	SRX593894	"Specific Capture analysis of normal sample TARGET-20-PASWER-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASWER-14A-01D A42513 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42513_1_lane_dupsFlagged.bam	SRR1386411	@dbgap@:reads/SRP012000/SRS635935/SRX593894/SRR1386411/SRR1386411.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWER-09A-01D_TARGET-20-PASWER-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWGL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWGL-09A-01D	DNA	EFO	SRS629139	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWGL-09A-01D A33283 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33283	SRX575196	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWGL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASWGL-09A-01D A33283 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33283_1_lane_dupsFlagged.bam	SRR1346456	@dbgap@:reads/SRP012000/SRS629139/SRX575196/SRR1346456/SRR1346456.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWGL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWGL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASWGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWGL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWGL-09A-01D	DNA	EFO	SRS629139	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWGL-09A-01D A33283 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33283	SRX575196	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWGL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASWGL-09A-01D A33283 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33283_1_lane_dupsFlagged.bam	SRR1346456	@dbgap@:reads/SRP012000/SRS629139/SRX575196/SRR1346456/SRR1346456.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWGL-09A-01D_TARGET-20-PASWGL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWGL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWGL-09A-01D	DNA	EFO	SRS629139	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWGL-09A-01D A33283 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33283	SRX575196	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWGL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASWGL-09A-01D A33283 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33283_1_lane_dupsFlagged.bam	SRR1346456	@dbgap@:reads/SRP012000/SRS629139/SRX575196/SRR1346456/SRR1346456.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWGL-09A-01D_TARGET-20-PASWGL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWGL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWGL-14A-01D	DNA	EFO	SRS636021	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWGL-14A-01D A42625 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42625	SRX593997	"Specific Capture analysis of normal sample TARGET-20-PASWGL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASWGL-14A-01D A42625 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42625_1_lane_dupsFlagged.bam	SRR1386424	@dbgap@:reads/SRP012000/SRS636021/SRX593997/SRR1386424/SRR1386424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWGL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWGL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASWGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWGL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWGL-14A-01D	DNA	EFO	SRS636021	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWGL-14A-01D A42625 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42625	SRX593997	"Specific Capture analysis of normal sample TARGET-20-PASWGL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASWGL-14A-01D A42625 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42625_1_lane_dupsFlagged.bam	SRR1386424	@dbgap@:reads/SRP012000/SRS636021/SRX593997/SRR1386424/SRR1386424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWGL-09A-01D_TARGET-20-PASWGL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWGL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWGL-14A-01D	DNA	EFO	SRS636021	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWGL-14A-01D A42625 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42625	SRX593997	"Specific Capture analysis of normal sample TARGET-20-PASWGL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASWGL-14A-01D A42625 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42625_1_lane_dupsFlagged.bam	SRR1386424	@dbgap@:reads/SRP012000/SRS636021/SRX593997/SRR1386424/SRR1386424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWGL-09A-01D_TARGET-20-PASWGL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWGS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWGS-03A-01D	DNA	EFO	SRS629129	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWGS-03A-01D A33284 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33284	SRX575184	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWGS-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASWGS-03A-01D A33284 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33284_1_lane_dupsFlagged.bam	SRR1346492	@dbgap@:reads/SRP012000/SRS629129/SRX575184/SRR1346492/SRR1346492.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWGS-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWGS-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASWGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWGS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWGS-03A-01D	DNA	EFO	SRS629129	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWGS-03A-01D A33284 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33284	SRX575184	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWGS-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASWGS-03A-01D A33284 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33284_1_lane_dupsFlagged.bam	SRR1346492	@dbgap@:reads/SRP012000/SRS629129/SRX575184/SRR1346492/SRR1346492.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWGS-03A-01D_TARGET-20-PASWGS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWGS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWGS-03A-01D	DNA	EFO	SRS629129	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWGS-03A-01D A33284 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33284	SRX575184	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWGS-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASWGS-03A-01D A33284 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33284_1_lane_dupsFlagged.bam	SRR1346492	@dbgap@:reads/SRP012000/SRS629129/SRX575184/SRR1346492/SRR1346492.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWGS-03A-01D_TARGET-20-PASWGS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWGS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWGS-04A-01D	DNA	EFO	SRS637341	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWGS-04A-01D A42252 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42252	SRX597731	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWGS-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASWGS-04A-01D A42252 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42252_1_lane_dupsFlagged.bam	SRR1395029	@dbgap@:reads/SRP012000/SRS637341/SRX597731/SRR1395029/SRR1395029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWGS-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWGS-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASWGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWGS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWGS-04A-01D	DNA	EFO	SRS637341	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWGS-04A-01D A42252 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42252	SRX597731	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWGS-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASWGS-04A-01D A42252 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42252_1_lane_dupsFlagged.bam	SRR1395029	@dbgap@:reads/SRP012000/SRS637341/SRX597731/SRR1395029/SRR1395029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWGS-04A-01D_TARGET-20-PASWGS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWGS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWGS-04A-01D	DNA	EFO	SRS637341	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWGS-04A-01D A42252 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42252	SRX597731	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWGS-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASWGS-04A-01D A42252 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42252_1_lane_dupsFlagged.bam	SRR1395029	@dbgap@:reads/SRP012000/SRS637341/SRX597731/SRR1395029/SRR1395029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWGS-04A-01D_TARGET-20-PASWGS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWGS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWGS-14A-01D	DNA	EFO	SRS637485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWGS-14A-01D A42932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42932	SRX597915	"Specific Capture analysis of normal sample TARGET-20-PASWGS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASWGS-14A-01D A42932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42932_1_lane_dupsFlagged.bam	SRR1395175	@dbgap@:reads/SRP012000/SRS637485/SRX597915/SRR1395175/SRR1395175.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWGS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWGS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASWGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWGS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWGS-14A-01D	DNA	EFO	SRS637485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWGS-14A-01D A42932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42932	SRX597915	"Specific Capture analysis of normal sample TARGET-20-PASWGS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASWGS-14A-01D A42932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42932_1_lane_dupsFlagged.bam	SRR1395175	@dbgap@:reads/SRP012000/SRS637485/SRX597915/SRR1395175/SRR1395175.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWGS-03A-01D_TARGET-20-PASWGS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWGS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWGS-14A-01D	DNA	EFO	SRS637485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWGS-14A-01D A42932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42932	SRX597915	"Specific Capture analysis of normal sample TARGET-20-PASWGS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASWGS-14A-01D A42932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42932_1_lane_dupsFlagged.bam	SRR1395175	@dbgap@:reads/SRP012000/SRS637485/SRX597915/SRR1395175/SRR1395175.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWGS-03A-01D_TARGET-20-PASWGS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWGS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWGS-14A-01D	DNA	EFO	SRS637485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWGS-14A-01D A42932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42932	SRX597915	"Specific Capture analysis of normal sample TARGET-20-PASWGS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASWGS-14A-01D A42932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42932_1_lane_dupsFlagged.bam	SRR1395175	@dbgap@:reads/SRP012000/SRS637485/SRX597915/SRR1395175/SRR1395175.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWGS-04A-01D_TARGET-20-PASWGS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWGS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWGS-14A-01D	DNA	EFO	SRS637485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWGS-14A-01D A42932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42932	SRX597915	"Specific Capture analysis of normal sample TARGET-20-PASWGS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASWGS-14A-01D A42932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42932_1_lane_dupsFlagged.bam	SRR1395175	@dbgap@:reads/SRP012000/SRS637485/SRX597915/SRR1395175/SRR1395175.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWGS-04A-01D_TARGET-20-PASWGS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWIM-09A-01D	DNA	EFO	SRS629115	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWIM-09A-01D A33285 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33285	SRX575171	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWIM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASWIM-09A-01D A33285 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33285_1_lane_dupsFlagged.bam	SRR1346446	@dbgap@:reads/SRP012000/SRS629115/SRX575171/SRR1346446/SRR1346446.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWIM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWIM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASWIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWIM-09A-01D	DNA	EFO	SRS629115	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWIM-09A-01D A33285 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33285	SRX575171	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWIM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASWIM-09A-01D A33285 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33285_1_lane_dupsFlagged.bam	SRR1346446	@dbgap@:reads/SRP012000/SRS629115/SRX575171/SRR1346446/SRR1346446.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWIM-09A-01D_TARGET-20-PASWIM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWIM-09A-01D	DNA	EFO	SRS629115	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWIM-09A-01D A33285 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33285	SRX575171	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWIM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASWIM-09A-01D A33285 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33285_1_lane_dupsFlagged.bam	SRR1346446	@dbgap@:reads/SRP012000/SRS629115/SRX575171/SRR1346446/SRR1346446.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWIM-09A-01D_TARGET-20-PASWIM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWIM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWIM-14A-01D	DNA	EFO	SRS637546	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWIM-14A-01D A42762 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42762	SRX597984	"Specific Capture analysis of normal sample TARGET-20-PASWIM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASWIM-14A-01D A42762 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42762_1_lane_dupsFlagged.bam	SRR1395275	@dbgap@:reads/SRP012000/SRS637546/SRX597984/SRR1395275/SRR1395275.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWIM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWIM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASWIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWIM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWIM-14A-01D	DNA	EFO	SRS637546	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWIM-14A-01D A42762 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42762	SRX597984	"Specific Capture analysis of normal sample TARGET-20-PASWIM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASWIM-14A-01D A42762 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42762_1_lane_dupsFlagged.bam	SRR1395275	@dbgap@:reads/SRP012000/SRS637546/SRX597984/SRR1395275/SRR1395275.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWIM-09A-01D_TARGET-20-PASWIM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWIM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWIM-14A-01D	DNA	EFO	SRS637546	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWIM-14A-01D A42762 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42762	SRX597984	"Specific Capture analysis of normal sample TARGET-20-PASWIM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASWIM-14A-01D A42762 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42762_1_lane_dupsFlagged.bam	SRR1395275	@dbgap@:reads/SRP012000/SRS637546/SRX597984/SRR1395275/SRR1395275.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWIM-09A-01D_TARGET-20-PASWIM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01D	DNA	EFO	SRS301159	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWLN-09A-01D A31190 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31190	SRX573413	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWLN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASWLN-09A-01D A31190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31190_1_lane_dupsFlagged.bam	SRR1342644	@dbgap@:reads/SRP012000/SRS301159/SRX573413/SRR1342644/SRR1342644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWLN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWLN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASWMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWMP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWMP-03A-01D	DNA	EFO	SRS633935	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWMP-03A-01D A41452 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41452	SRX588541	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWMP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASWMP-03A-01D A41452 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41452_1_lane_dupsFlagged.bam	SRR1374893	@dbgap@:reads/SRP012000/SRS633935/SRX588541/SRR1374893/SRR1374893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWMP-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWMP-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASWMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWMP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWMP-03A-01D	DNA	EFO	SRS633935	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWMP-03A-01D A41452 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41452	SRX588541	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWMP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASWMP-03A-01D A41452 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41452_1_lane_dupsFlagged.bam	SRR1374893	@dbgap@:reads/SRP012000/SRS633935/SRX588541/SRR1374893/SRR1374893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWMP-03A-01D_TARGET-20-PASWMP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWMP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWMP-03A-01D	DNA	EFO	SRS633935	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWMP-03A-01D A41452 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41452	SRX588541	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWMP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASWMP-03A-01D A41452 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41452_1_lane_dupsFlagged.bam	SRR1374893	@dbgap@:reads/SRP012000/SRS633935/SRX588541/SRR1374893/SRR1374893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWMP-03A-01D_TARGET-20-PASWMP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWMP-14A-01D	DNA	EFO	SRS637548	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWMP-14A-01D A42761 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42761	SRX597986	"Specific Capture analysis of normal sample TARGET-20-PASWMP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASWMP-14A-01D A42761 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42761_1_lane_dupsFlagged.bam	SRR1395255	@dbgap@:reads/SRP012000/SRS637548/SRX597986/SRR1395255/SRR1395255.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWMP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWMP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASWMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWMP-14A-01D	DNA	EFO	SRS637548	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWMP-14A-01D A42761 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42761	SRX597986	"Specific Capture analysis of normal sample TARGET-20-PASWMP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASWMP-14A-01D A42761 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42761_1_lane_dupsFlagged.bam	SRR1395255	@dbgap@:reads/SRP012000/SRS637548/SRX597986/SRR1395255/SRR1395255.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWMP-03A-01D_TARGET-20-PASWMP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWMP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWMP-14A-01D	DNA	EFO	SRS637548	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWMP-14A-01D A42761 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42761	SRX597986	"Specific Capture analysis of normal sample TARGET-20-PASWMP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASWMP-14A-01D A42761 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42761_1_lane_dupsFlagged.bam	SRR1395255	@dbgap@:reads/SRP012000/SRS637548/SRX597986/SRR1395255/SRR1395255.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWMP-03A-01D_TARGET-20-PASWMP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWNZ-09A-01D	DNA	EFO	SRS633904	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWNZ-09A-01D A41453 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41453	SRX588508	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWNZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASWNZ-09A-01D A41453 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41453_1_lane_dupsFlagged.bam	SRR1374866	@dbgap@:reads/SRP012000/SRS633904/SRX588508/SRR1374866/SRR1374866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWNZ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWNZ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASWNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWNZ-09A-01D	DNA	EFO	SRS633904	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWNZ-09A-01D A41453 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41453	SRX588508	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWNZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASWNZ-09A-01D A41453 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41453_1_lane_dupsFlagged.bam	SRR1374866	@dbgap@:reads/SRP012000/SRS633904/SRX588508/SRR1374866/SRR1374866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWNZ-09A-01D_TARGET-20-PASWNZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWNZ-09A-01D	DNA	EFO	SRS633904	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWNZ-09A-01D A41453 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41453	SRX588508	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWNZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASWNZ-09A-01D A41453 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41453_1_lane_dupsFlagged.bam	SRR1374866	@dbgap@:reads/SRP012000/SRS633904/SRX588508/SRR1374866/SRR1374866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWNZ-09A-01D_TARGET-20-PASWNZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWNZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWNZ-14A-01D	DNA	EFO	SRS635636	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWNZ-14A-01D A41697 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41697	SRX593459	"Specific Capture analysis of normal sample TARGET-20-PASWNZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASWNZ-14A-01D A41697 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41697_1_lane_dupsFlagged.bam	SRR1385940	@dbgap@:reads/SRP012000/SRS635636/SRX593459/SRR1385940/SRR1385940.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWNZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWNZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASWNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWNZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWNZ-14A-01D	DNA	EFO	SRS635636	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWNZ-14A-01D A41697 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41697	SRX593459	"Specific Capture analysis of normal sample TARGET-20-PASWNZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASWNZ-14A-01D A41697 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41697_1_lane_dupsFlagged.bam	SRR1385940	@dbgap@:reads/SRP012000/SRS635636/SRX593459/SRR1385940/SRR1385940.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWNZ-09A-01D_TARGET-20-PASWNZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWNZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWNZ-14A-01D	DNA	EFO	SRS635636	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWNZ-14A-01D A41697 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41697	SRX593459	"Specific Capture analysis of normal sample TARGET-20-PASWNZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASWNZ-14A-01D A41697 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41697_1_lane_dupsFlagged.bam	SRR1385940	@dbgap@:reads/SRP012000/SRS635636/SRX593459/SRR1385940/SRR1385940.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWNZ-09A-01D_TARGET-20-PASWNZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-04A-03D	DNA	EFO	SRS637533	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPD-04A-03D A42723 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42723	SRX597971	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWPD-04A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASWPD-04A-03D A42723 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42723_1_lane_dupsFlagged.bam	SRR1395260	@dbgap@:reads/SRP012000/SRS637533/SRX597971/SRR1395260/SRR1395260.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWPD-04A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWPD-04A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-04A-03D	DNA	EFO	SRS637533	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPD-04A-03D A42723 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42723	SRX597971	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWPD-04A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASWPD-04A-03D A42723 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42723_1_lane_dupsFlagged.bam	SRR1395260	@dbgap@:reads/SRP012000/SRS637533/SRX597971/SRR1395260/SRR1395260.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWPD-04A-03D_TARGET-20-PASWPD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-04A-03D	DNA	EFO	SRS637533	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPD-04A-03D A42723 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42723	SRX597971	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWPD-04A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASWPD-04A-03D A42723 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42723_1_lane_dupsFlagged.bam	SRR1395260	@dbgap@:reads/SRP012000/SRS637533/SRX597971/SRR1395260/SRR1395260.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWPD-04A-03D_TARGET-20-PASWPD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-02D	DNA	EFO	SRS628926	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPD-09A-02D A32289 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32289	SRX574982	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWPD-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASWPD-09A-02D A32289 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32289_1_lane_dupsFlagged.bam	SRR1346129	@dbgap@:reads/SRP012000/SRS628926/SRX574982/SRR1346129/SRR1346129.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWPD-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWPD-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-02D	DNA	EFO	SRS628926	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPD-09A-02D A32289 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32289	SRX574982	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWPD-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASWPD-09A-02D A32289 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32289_1_lane_dupsFlagged.bam	SRR1346129	@dbgap@:reads/SRP012000/SRS628926/SRX574982/SRR1346129/SRR1346129.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWPD-09A-02D_TARGET-20-PASWPD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-02D	DNA	EFO	SRS628926	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPD-09A-02D A32289 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32289	SRX574982	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWPD-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASWPD-09A-02D A32289 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32289_1_lane_dupsFlagged.bam	SRR1346129	@dbgap@:reads/SRP012000/SRS628926/SRX574982/SRR1346129/SRR1346129.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWPD-09A-02D_TARGET-20-PASWPD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-01D	DNA	EFO	SRS637550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPD-14A-01D A42756 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42756	SRX597989	"Specific Capture analysis of normal sample TARGET-20-PASWPD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASWPD-14A-01D A42756 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42756_1_lane_dupsFlagged.bam	SRR1395277	@dbgap@:reads/SRP012000/SRS637550/SRX597989/SRR1395277/SRR1395277.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWPD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWPD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-01D	DNA	EFO	SRS637550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPD-14A-01D A42756 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42756	SRX597989	"Specific Capture analysis of normal sample TARGET-20-PASWPD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASWPD-14A-01D A42756 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42756_1_lane_dupsFlagged.bam	SRR1395277	@dbgap@:reads/SRP012000/SRS637550/SRX597989/SRR1395277/SRR1395277.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWPD-04A-03D_TARGET-20-PASWPD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-01D	DNA	EFO	SRS637550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPD-14A-01D A42756 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42756	SRX597989	"Specific Capture analysis of normal sample TARGET-20-PASWPD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASWPD-14A-01D A42756 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42756_1_lane_dupsFlagged.bam	SRR1395277	@dbgap@:reads/SRP012000/SRS637550/SRX597989/SRR1395277/SRR1395277.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWPD-04A-03D_TARGET-20-PASWPD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-01D	DNA	EFO	SRS637550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPD-14A-01D A42756 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42756	SRX597989	"Specific Capture analysis of normal sample TARGET-20-PASWPD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASWPD-14A-01D A42756 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42756_1_lane_dupsFlagged.bam	SRR1395277	@dbgap@:reads/SRP012000/SRS637550/SRX597989/SRR1395277/SRR1395277.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWPD-09A-02D_TARGET-20-PASWPD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-14A-01D	DNA	EFO	SRS637550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPD-14A-01D A42756 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42756	SRX597989	"Specific Capture analysis of normal sample TARGET-20-PASWPD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASWPD-14A-01D A42756 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42756_1_lane_dupsFlagged.bam	SRR1395277	@dbgap@:reads/SRP012000/SRS637550/SRX597989/SRR1395277/SRR1395277.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWPD-09A-02D_TARGET-20-PASWPD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-02D	DNA	EFO	SRS628323	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPT-09A-02D A31270 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31270	SRX573399	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWPT-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASWPT-09A-02D A31270 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31270_1_lane_dupsFlagged.bam	SRR1342617	@dbgap@:reads/SRP012000/SRS628323/SRX573399/SRR1342617/SRR1342617.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWPT-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWPT-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASWTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWTY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWTY-09A-01D	DNA	EFO	SRS628955	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWTY-09A-01D A32290 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32290	SRX575011	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWTY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASWTY-09A-01D A32290 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32290_1_lane_dupsFlagged.bam	SRR1346202	@dbgap@:reads/SRP012000/SRS628955/SRX575011/SRR1346202/SRR1346202.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWTY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWTY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASWVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWVH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWVH-09A-01D	DNA	EFO	SRS633919	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWVH-09A-01D A41455 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41455	SRX588524	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWVH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASWVH-09A-01D A41455 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41455_1_lane_dupsFlagged.bam	SRR1374834	@dbgap@:reads/SRP012000/SRS633919/SRX588524/SRR1374834/SRR1374834.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWVH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWVH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASWWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWWD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWWD-03A-01D	DNA	EFO	SRS635571	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWWD-03A-01D A41944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41944	SRX593391	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWWD-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASWWD-03A-01D A41944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41944_1_lane_dupsFlagged.bam	SRR1385921	@dbgap@:reads/SRP012000/SRS635571/SRX593391/SRR1385921/SRR1385921.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWWD-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWWD-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASWWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWWD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWWD-03A-01D	DNA	EFO	SRS635571	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWWD-03A-01D A41944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41944	SRX593391	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWWD-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASWWD-03A-01D A41944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41944_1_lane_dupsFlagged.bam	SRR1385921	@dbgap@:reads/SRP012000/SRS635571/SRX593391/SRR1385921/SRR1385921.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWWD-03A-01D_TARGET-20-PASWWD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWWD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWWD-03A-01D	DNA	EFO	SRS635571	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWWD-03A-01D A41944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41944	SRX593391	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASWWD-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASWWD-03A-01D A41944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41944_1_lane_dupsFlagged.bam	SRR1385921	@dbgap@:reads/SRP012000/SRS635571/SRX593391/SRR1385921/SRR1385921.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWWD-03A-01D_TARGET-20-PASWWD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASWWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWWD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWWD-14A-01D	DNA	EFO	SRS637433	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWWD-14A-01D A42831 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42831	SRX597842	"Specific Capture analysis of normal sample TARGET-20-PASWWD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASWWD-14A-01D A42831 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42831_1_lane_dupsFlagged.bam	SRR1395078	@dbgap@:reads/SRP012000/SRS637433/SRX597842/SRR1395078/SRR1395078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASWWD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASWWD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASWWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWWD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWWD-14A-01D	DNA	EFO	SRS637433	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWWD-14A-01D A42831 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42831	SRX597842	"Specific Capture analysis of normal sample TARGET-20-PASWWD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASWWD-14A-01D A42831 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42831_1_lane_dupsFlagged.bam	SRR1395078	@dbgap@:reads/SRP012000/SRS637433/SRX597842/SRR1395078/SRR1395078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWWD-03A-01D_TARGET-20-PASWWD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASWWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASWWD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWWD-14A-01D	DNA	EFO	SRS637433	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWWD-14A-01D A42831 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42831	SRX597842	"Specific Capture analysis of normal sample TARGET-20-PASWWD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASWWD-14A-01D A42831 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42831_1_lane_dupsFlagged.bam	SRR1395078	@dbgap@:reads/SRP012000/SRS637433/SRX597842/SRR1395078/SRR1395078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASWWD-03A-01D_TARGET-20-PASWWD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXAH-09A-01D	DNA	EFO	SRS633916	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXAH-09A-01D A41454 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41454	SRX588521	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXAH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASXAH-09A-01D A41454 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41454_1_lane_dupsFlagged.bam	SRR1374897	@dbgap@:reads/SRP012000/SRS633916/SRX588521/SRR1374897/SRR1374897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXAH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXAH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASXAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXAH-09A-01D	DNA	EFO	SRS633916	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXAH-09A-01D A41454 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41454	SRX588521	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXAH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASXAH-09A-01D A41454 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41454_1_lane_dupsFlagged.bam	SRR1374897	@dbgap@:reads/SRP012000/SRS633916/SRX588521/SRR1374897/SRR1374897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXAH-09A-01D_TARGET-20-PASXAH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXAH-09A-01D	DNA	EFO	SRS633916	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXAH-09A-01D A41454 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41454	SRX588521	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXAH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASXAH-09A-01D A41454 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41454_1_lane_dupsFlagged.bam	SRR1374897	@dbgap@:reads/SRP012000/SRS633916/SRX588521/SRR1374897/SRR1374897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXAH-09A-01D_TARGET-20-PASXAH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXAH-14A-01D	DNA	EFO	SRS635941	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXAH-14A-01D A42534 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42534	SRX593903	"Specific Capture analysis of normal sample TARGET-20-PASXAH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASXAH-14A-01D A42534 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42534_1_lane_dupsFlagged.bam	SRR1386346	@dbgap@:reads/SRP012000/SRS635941/SRX593903/SRR1386346/SRR1386346.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXAH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXAH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASXAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXAH-14A-01D	DNA	EFO	SRS635941	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXAH-14A-01D A42534 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42534	SRX593903	"Specific Capture analysis of normal sample TARGET-20-PASXAH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASXAH-14A-01D A42534 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42534_1_lane_dupsFlagged.bam	SRR1386346	@dbgap@:reads/SRP012000/SRS635941/SRX593903/SRR1386346/SRR1386346.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXAH-09A-01D_TARGET-20-PASXAH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXAH-14A-01D	DNA	EFO	SRS635941	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXAH-14A-01D A42534 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42534	SRX593903	"Specific Capture analysis of normal sample TARGET-20-PASXAH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASXAH-14A-01D A42534 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42534_1_lane_dupsFlagged.bam	SRR1386346	@dbgap@:reads/SRP012000/SRS635941/SRX593903/SRR1386346/SRR1386346.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXAH-09A-01D_TARGET-20-PASXAH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXAP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXAP-09A-01D	DNA	EFO	SRS629130	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXAP-09A-01D A33286 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33286	SRX575187	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXAP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASXAP-09A-01D A33286 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33286_1_lane_dupsFlagged.bam	SRR1346432	@dbgap@:reads/SRP012000/SRS629130/SRX575187/SRR1346432/SRR1346432.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXAP-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXAP-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASXAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXAP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXAP-09A-01D	DNA	EFO	SRS629130	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXAP-09A-01D A33286 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33286	SRX575187	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXAP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASXAP-09A-01D A33286 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33286_1_lane_dupsFlagged.bam	SRR1346432	@dbgap@:reads/SRP012000/SRS629130/SRX575187/SRR1346432/SRR1346432.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXAP-09A-01D_TARGET-20-PASXAP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXAP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXAP-09A-01D	DNA	EFO	SRS629130	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXAP-09A-01D A33286 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33286	SRX575187	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXAP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASXAP-09A-01D A33286 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33286_1_lane_dupsFlagged.bam	SRR1346432	@dbgap@:reads/SRP012000/SRS629130/SRX575187/SRR1346432/SRR1346432.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXAP-09A-01D_TARGET-20-PASXAP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXAP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXAP-14A-01D	DNA	EFO	SRS635784	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXAP-14A-01D A42320 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42320	SRX593624	"Specific Capture analysis of normal sample TARGET-20-PASXAP-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASXAP-14A-01D A42320 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42320_1_lane_dupsFlagged.bam	SRR1386093	@dbgap@:reads/SRP012000/SRS635784/SRX593624/SRR1386093/SRR1386093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXAP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXAP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASXAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXAP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXAP-14A-01D	DNA	EFO	SRS635784	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXAP-14A-01D A42320 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42320	SRX593624	"Specific Capture analysis of normal sample TARGET-20-PASXAP-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASXAP-14A-01D A42320 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42320_1_lane_dupsFlagged.bam	SRR1386093	@dbgap@:reads/SRP012000/SRS635784/SRX593624/SRR1386093/SRR1386093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXAP-09A-01D_TARGET-20-PASXAP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXAP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXAP-14A-01D	DNA	EFO	SRS635784	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXAP-14A-01D A42320 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42320	SRX593624	"Specific Capture analysis of normal sample TARGET-20-PASXAP-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASXAP-14A-01D A42320 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42320_1_lane_dupsFlagged.bam	SRR1386093	@dbgap@:reads/SRP012000/SRS635784/SRX593624/SRR1386093/SRR1386093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXAP-09A-01D_TARGET-20-PASXAP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXDS-09A-01D	DNA	EFO	SRS629138	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXDS-09A-01D A33287 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33287	SRX575194	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXDS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASXDS-09A-01D A33287 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33287_1_lane_dupsFlagged.bam	SRR1346475	@dbgap@:reads/SRP012000/SRS629138/SRX575194/SRR1346475/SRR1346475.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXDS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXDS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASXDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXDS-09A-01D	DNA	EFO	SRS629138	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXDS-09A-01D A33287 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33287	SRX575194	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXDS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASXDS-09A-01D A33287 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33287_1_lane_dupsFlagged.bam	SRR1346475	@dbgap@:reads/SRP012000/SRS629138/SRX575194/SRR1346475/SRR1346475.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXDS-09A-01D_TARGET-20-PASXDS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXDS-09A-01D	DNA	EFO	SRS629138	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXDS-09A-01D A33287 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33287	SRX575194	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXDS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASXDS-09A-01D A33287 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33287_1_lane_dupsFlagged.bam	SRR1346475	@dbgap@:reads/SRP012000/SRS629138/SRX575194/SRR1346475/SRR1346475.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXDS-09A-01D_TARGET-20-PASXDS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXDS-14A-01D	DNA	EFO	SRS635772	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXDS-14A-01D A42321 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42321	SRX593609	"Specific Capture analysis of normal sample TARGET-20-PASXDS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASXDS-14A-01D A42321 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42321_1_lane_dupsFlagged.bam	SRR1386059	@dbgap@:reads/SRP012000/SRS635772/SRX593609/SRR1386059/SRR1386059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXDS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXDS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASXDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXDS-14A-01D	DNA	EFO	SRS635772	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXDS-14A-01D A42321 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42321	SRX593609	"Specific Capture analysis of normal sample TARGET-20-PASXDS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASXDS-14A-01D A42321 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42321_1_lane_dupsFlagged.bam	SRR1386059	@dbgap@:reads/SRP012000/SRS635772/SRX593609/SRR1386059/SRR1386059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXDS-09A-01D_TARGET-20-PASXDS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXDS-14A-01D	DNA	EFO	SRS635772	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXDS-14A-01D A42321 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42321	SRX593609	"Specific Capture analysis of normal sample TARGET-20-PASXDS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASXDS-14A-01D A42321 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42321_1_lane_dupsFlagged.bam	SRR1386059	@dbgap@:reads/SRP012000/SRS635772/SRX593609/SRR1386059/SRR1386059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXDS-09A-01D_TARGET-20-PASXDS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXEA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXEA-09A-02D	DNA	EFO	SRS628911	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXEA-09A-02D A32291 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32291	SRX574967	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXEA-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASXEA-09A-02D A32291 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32291_1_lane_dupsFlagged.bam	SRR1346185	@dbgap@:reads/SRP012000/SRS628911/SRX574967/SRR1346185/SRR1346185.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXEA-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXEA-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASXEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXEA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXEA-09A-02D	DNA	EFO	SRS628911	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXEA-09A-02D A32291 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32291	SRX574967	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXEA-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASXEA-09A-02D A32291 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32291_1_lane_dupsFlagged.bam	SRR1346185	@dbgap@:reads/SRP012000/SRS628911/SRX574967/SRR1346185/SRR1346185.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXEA-09A-02D_TARGET-20-PASXEA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXEA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXEA-09A-02D	DNA	EFO	SRS628911	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXEA-09A-02D A32291 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32291	SRX574967	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXEA-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASXEA-09A-02D A32291 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32291_1_lane_dupsFlagged.bam	SRR1346185	@dbgap@:reads/SRP012000/SRS628911/SRX574967/SRR1346185/SRR1346185.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXEA-09A-02D_TARGET-20-PASXEA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXEA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXEA-14A-01D	DNA	EFO	SRS635782	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXEA-14A-01D A42350 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42350	SRX593623	"Specific Capture analysis of normal sample TARGET-20-PASXEA-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASXEA-14A-01D A42350 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42350_1_lane_dupsFlagged.bam	SRR1386027	@dbgap@:reads/SRP012000/SRS635782/SRX593623/SRR1386027/SRR1386027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXEA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXEA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASXEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXEA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXEA-14A-01D	DNA	EFO	SRS635782	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXEA-14A-01D A42350 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42350	SRX593623	"Specific Capture analysis of normal sample TARGET-20-PASXEA-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASXEA-14A-01D A42350 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42350_1_lane_dupsFlagged.bam	SRR1386027	@dbgap@:reads/SRP012000/SRS635782/SRX593623/SRR1386027/SRR1386027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXEA-09A-02D_TARGET-20-PASXEA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXEA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXEA-14A-01D	DNA	EFO	SRS635782	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXEA-14A-01D A42350 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42350	SRX593623	"Specific Capture analysis of normal sample TARGET-20-PASXEA-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASXEA-14A-01D A42350 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42350_1_lane_dupsFlagged.bam	SRR1386027	@dbgap@:reads/SRP012000/SRS635782/SRX593623/SRR1386027/SRR1386027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXEA-09A-02D_TARGET-20-PASXEA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXGT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXGT-03A-01D	DNA	EFO	SRS635585	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXGT-03A-01D A41911 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41911	SRX593404	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXGT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASXGT-03A-01D A41911 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41911_1_lane_dupsFlagged.bam	SRR1385912	@dbgap@:reads/SRP012000/SRS635585/SRX593404/SRR1385912/SRR1385912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXGT-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXGT-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASXGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXGT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXGT-03A-01D	DNA	EFO	SRS635585	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXGT-03A-01D A41911 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41911	SRX593404	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXGT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASXGT-03A-01D A41911 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41911_1_lane_dupsFlagged.bam	SRR1385912	@dbgap@:reads/SRP012000/SRS635585/SRX593404/SRR1385912/SRR1385912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXGT-03A-01D_TARGET-20-PASXGT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXGT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXGT-03A-01D	DNA	EFO	SRS635585	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXGT-03A-01D A41911 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41911	SRX593404	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXGT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASXGT-03A-01D A41911 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41911_1_lane_dupsFlagged.bam	SRR1385912	@dbgap@:reads/SRP012000/SRS635585/SRX593404/SRR1385912/SRR1385912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXGT-03A-01D_TARGET-20-PASXGT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXGT-14A-01D	DNA	EFO	SRS637358	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXGT-14A-01D A42832 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42832	SRX597763	"Specific Capture analysis of normal sample TARGET-20-PASXGT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASXGT-14A-01D A42832 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42832_1_lane_dupsFlagged.bam	SRR1395067	@dbgap@:reads/SRP012000/SRS637358/SRX597763/SRR1395067/SRR1395067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXGT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXGT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASXGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXGT-14A-01D	DNA	EFO	SRS637358	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXGT-14A-01D A42832 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42832	SRX597763	"Specific Capture analysis of normal sample TARGET-20-PASXGT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASXGT-14A-01D A42832 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42832_1_lane_dupsFlagged.bam	SRR1395067	@dbgap@:reads/SRP012000/SRS637358/SRX597763/SRR1395067/SRR1395067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXGT-03A-01D_TARGET-20-PASXGT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXGT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXGT-14A-01D	DNA	EFO	SRS637358	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXGT-14A-01D A42832 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42832	SRX597763	"Specific Capture analysis of normal sample TARGET-20-PASXGT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASXGT-14A-01D A42832 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42832_1_lane_dupsFlagged.bam	SRR1395067	@dbgap@:reads/SRP012000/SRS637358/SRX597763/SRR1395067/SRR1395067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXGT-03A-01D_TARGET-20-PASXGT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXIS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXIS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXIS-09A-01D	DNA	EFO	SRS628941	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXIS-09A-01D A32292 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32292	SRX574997	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXIS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASXIS-09A-01D A32292 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32292_1_lane_dupsFlagged.bam	SRR1346121	@dbgap@:reads/SRP012000/SRS628941/SRX574997/SRR1346121/SRR1346121.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXIS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXIS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASXIS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXIS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXIS-09A-01D	DNA	EFO	SRS628941	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXIS-09A-01D A32292 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32292	SRX574997	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXIS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASXIS-09A-01D A32292 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32292_1_lane_dupsFlagged.bam	SRR1346121	@dbgap@:reads/SRP012000/SRS628941/SRX574997/SRR1346121/SRR1346121.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXIS-09A-01D_TARGET-20-PASXIS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXIS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXIS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXIS-09A-01D	DNA	EFO	SRS628941	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXIS-09A-01D A32292 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32292	SRX574997	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXIS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASXIS-09A-01D A32292 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32292_1_lane_dupsFlagged.bam	SRR1346121	@dbgap@:reads/SRP012000/SRS628941/SRX574997/SRR1346121/SRR1346121.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXIS-09A-01D_TARGET-20-PASXIS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXIS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXIS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXIS-14A-01D	DNA	EFO	SRS637392	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXIS-14A-01D A42861 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42861	SRX597799	"Specific Capture analysis of normal sample TARGET-20-PASXIS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASXIS-14A-01D A42861 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42861_1_lane_dupsFlagged.bam	SRR1395062	@dbgap@:reads/SRP012000/SRS637392/SRX597799/SRR1395062/SRR1395062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXIS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXIS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASXIS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXIS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXIS-14A-01D	DNA	EFO	SRS637392	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXIS-14A-01D A42861 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42861	SRX597799	"Specific Capture analysis of normal sample TARGET-20-PASXIS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASXIS-14A-01D A42861 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42861_1_lane_dupsFlagged.bam	SRR1395062	@dbgap@:reads/SRP012000/SRS637392/SRX597799/SRR1395062/SRR1395062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXIS-09A-01D_TARGET-20-PASXIS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXIS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXIS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXIS-14A-01D	DNA	EFO	SRS637392	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXIS-14A-01D A42861 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42861	SRX597799	"Specific Capture analysis of normal sample TARGET-20-PASXIS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASXIS-14A-01D A42861 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42861_1_lane_dupsFlagged.bam	SRR1395062	@dbgap@:reads/SRP012000/SRS637392/SRX597799/SRR1395062/SRR1395062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXIS-09A-01D_TARGET-20-PASXIS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXJY-09A-01D	DNA	EFO	SRS628935	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXJY-09A-01D A32293 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32293	SRX574991	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXJY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASXJY-09A-01D A32293 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32293_1_lane_dupsFlagged.bam	SRR1346162	@dbgap@:reads/SRP012000/SRS628935/SRX574991/SRR1346162/SRR1346162.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXJY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXJY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASXJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXJY-09A-01D	DNA	EFO	SRS628935	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXJY-09A-01D A32293 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32293	SRX574991	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXJY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASXJY-09A-01D A32293 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32293_1_lane_dupsFlagged.bam	SRR1346162	@dbgap@:reads/SRP012000/SRS628935/SRX574991/SRR1346162/SRR1346162.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXJY-09A-01D_TARGET-20-PASXJY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXJY-09A-01D	DNA	EFO	SRS628935	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXJY-09A-01D A32293 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32293	SRX574991	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXJY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASXJY-09A-01D A32293 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32293_1_lane_dupsFlagged.bam	SRR1346162	@dbgap@:reads/SRP012000/SRS628935/SRX574991/SRR1346162/SRR1346162.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXJY-09A-01D_TARGET-20-PASXJY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXJY-14A-01D	DNA	EFO	SRS635668	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXJY-14A-01D A41696 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41696	SRX593490	"Specific Capture analysis of normal sample TARGET-20-PASXJY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASXJY-14A-01D A41696 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41696_1_lane_dupsFlagged.bam	SRR1385941	@dbgap@:reads/SRP012000/SRS635668/SRX593490/SRR1385941/SRR1385941.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXJY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXJY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASXJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXJY-14A-01D	DNA	EFO	SRS635668	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXJY-14A-01D A41696 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41696	SRX593490	"Specific Capture analysis of normal sample TARGET-20-PASXJY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASXJY-14A-01D A41696 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41696_1_lane_dupsFlagged.bam	SRR1385941	@dbgap@:reads/SRP012000/SRS635668/SRX593490/SRR1385941/SRR1385941.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXJY-09A-01D_TARGET-20-PASXJY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXJY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXJY-14A-01D	DNA	EFO	SRS635668	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXJY-14A-01D A41696 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41696	SRX593490	"Specific Capture analysis of normal sample TARGET-20-PASXJY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASXJY-14A-01D A41696 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41696_1_lane_dupsFlagged.bam	SRR1385941	@dbgap@:reads/SRP012000/SRS635668/SRX593490/SRR1385941/SRR1385941.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXJY-09A-01D_TARGET-20-PASXJY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXKT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXKT-03A-01D	DNA	EFO	SRS628898	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXKT-03A-01D A32294 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32294	SRX574954	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXKT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASXKT-03A-01D A32294 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32294_1_lane_dupsFlagged.bam	SRR1346122	@dbgap@:reads/SRP012000/SRS628898/SRX574954/SRR1346122/SRR1346122.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXKT-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXKT-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASXLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXLJ-09A-01D	DNA	EFO	SRS628276	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXLJ-09A-01D A31271 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31271	SRX573328	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXLJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASXLJ-09A-01D A31271 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31271_1_lane_dupsFlagged.bam	SRR1342614	@dbgap@:reads/SRP012000/SRS628276/SRX573328/SRR1342614/SRR1342614.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXLJ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXLJ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASXLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXLJ-09A-01D	DNA	EFO	SRS628276	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXLJ-09A-01D A31271 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31271	SRX573328	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXLJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASXLJ-09A-01D A31271 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31271_1_lane_dupsFlagged.bam	SRR1342614	@dbgap@:reads/SRP012000/SRS628276/SRX573328/SRR1342614/SRR1342614.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXLJ-09A-01D_TARGET-20-PASXLJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXLJ-09A-01D	DNA	EFO	SRS628276	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXLJ-09A-01D A31271 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31271	SRX573328	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXLJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASXLJ-09A-01D A31271 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31271_1_lane_dupsFlagged.bam	SRR1342614	@dbgap@:reads/SRP012000/SRS628276/SRX573328/SRR1342614/SRR1342614.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXLJ-09A-01D_TARGET-20-PASXLJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXLJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXLJ-10A-01D	DNA	EFO	SRS635733	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXLJ-10A-01D A42306 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42306	SRX593563	"Specific Capture analysis of normal sample TARGET-20-PASXLJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASXLJ-10A-01D A42306 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42306_1_lane_dupsFlagged.bam	SRR1386086	@dbgap@:reads/SRP012000/SRS635733/SRX593563/SRR1386086/SRR1386086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXLJ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXLJ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASXLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXLJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXLJ-10A-01D	DNA	EFO	SRS635733	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXLJ-10A-01D A42306 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42306	SRX593563	"Specific Capture analysis of normal sample TARGET-20-PASXLJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASXLJ-10A-01D A42306 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42306_1_lane_dupsFlagged.bam	SRR1386086	@dbgap@:reads/SRP012000/SRS635733/SRX593563/SRR1386086/SRR1386086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXLJ-09A-01D_TARGET-20-PASXLJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXLJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXLJ-10A-01D	DNA	EFO	SRS635733	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXLJ-10A-01D A42306 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42306	SRX593563	"Specific Capture analysis of normal sample TARGET-20-PASXLJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASXLJ-10A-01D A42306 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42306_1_lane_dupsFlagged.bam	SRR1386086	@dbgap@:reads/SRP012000/SRS635733/SRX593563/SRR1386086/SRR1386086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXLJ-09A-01D_TARGET-20-PASXLJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01D	DNA	EFO	SRS270792	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXNR-04A-01D A42257 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42257	SRX597714	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXNR-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASXNR-04A-01D A42257 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42257_1_lane_dupsFlagged.bam	SRR1395042	@dbgap@:reads/SRP012000/SRS270792/SRX597714/SRR1395042/SRR1395042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXNR-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXNR-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01D	DNA	EFO	SRS270792	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXNR-04A-01D A42257 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42257	SRX597714	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXNR-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASXNR-04A-01D A42257 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42257_1_lane_dupsFlagged.bam	SRR1395042	@dbgap@:reads/SRP012000/SRS270792/SRX597714/SRR1395042/SRR1395042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXNR-04A-01D_TARGET-20-PASXNR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01D	DNA	EFO	SRS270792	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXNR-04A-01D A42257 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42257	SRX597714	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXNR-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASXNR-04A-01D A42257 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42257_1_lane_dupsFlagged.bam	SRR1395042	@dbgap@:reads/SRP012000/SRS270792/SRX597714/SRR1395042/SRR1395042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXNR-04A-01D_TARGET-20-PASXNR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-09A-01D	DNA	EFO	SRS628947	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXNR-09A-01D A32295 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32295	SRX575004	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXNR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASXNR-09A-01D A32295 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32295_1_lane_dupsFlagged.bam	SRR1346155	@dbgap@:reads/SRP012000/SRS628947/SRX575004/SRR1346155/SRR1346155.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXNR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXNR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-09A-01D	DNA	EFO	SRS628947	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXNR-09A-01D A32295 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32295	SRX575004	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXNR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASXNR-09A-01D A32295 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32295_1_lane_dupsFlagged.bam	SRR1346155	@dbgap@:reads/SRP012000/SRS628947/SRX575004/SRR1346155/SRR1346155.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXNR-09A-01D_TARGET-20-PASXNR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-09A-01D	DNA	EFO	SRS628947	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXNR-09A-01D A32295 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32295	SRX575004	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXNR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASXNR-09A-01D A32295 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32295_1_lane_dupsFlagged.bam	SRR1346155	@dbgap@:reads/SRP012000/SRS628947/SRX575004/SRR1346155/SRR1346155.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXNR-09A-01D_TARGET-20-PASXNR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXNR-14A-01D A42921 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42921	SRX597889	"Specific Capture analysis of normal sample TARGET-20-PASXNR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASXNR-14A-01D A42921 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42921_1_lane_dupsFlagged.bam	SRR1395138	@dbgap@:reads/SRP012000/SRS270794/SRX597889/SRR1395138/SRR1395138.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXNR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXNR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXNR-14A-01D A42921 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42921	SRX597889	"Specific Capture analysis of normal sample TARGET-20-PASXNR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASXNR-14A-01D A42921 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42921_1_lane_dupsFlagged.bam	SRR1395138	@dbgap@:reads/SRP012000/SRS270794/SRX597889/SRR1395138/SRR1395138.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXNR-04A-01D_TARGET-20-PASXNR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXNR-14A-01D A42921 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42921	SRX597889	"Specific Capture analysis of normal sample TARGET-20-PASXNR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASXNR-14A-01D A42921 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42921_1_lane_dupsFlagged.bam	SRR1395138	@dbgap@:reads/SRP012000/SRS270794/SRX597889/SRR1395138/SRR1395138.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXNR-04A-01D_TARGET-20-PASXNR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXNR-14A-01D A42921 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42921	SRX597889	"Specific Capture analysis of normal sample TARGET-20-PASXNR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASXNR-14A-01D A42921 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42921_1_lane_dupsFlagged.bam	SRR1395138	@dbgap@:reads/SRP012000/SRS270794/SRX597889/SRR1395138/SRR1395138.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXNR-09A-01D_TARGET-20-PASXNR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-14A-01D	DNA	EFO	SRS270794	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXNR-14A-01D A42921 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42921	SRX597889	"Specific Capture analysis of normal sample TARGET-20-PASXNR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASXNR-14A-01D A42921 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42921_1_lane_dupsFlagged.bam	SRR1395138	@dbgap@:reads/SRP012000/SRS270794/SRX597889/SRR1395138/SRR1395138.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXNR-09A-01D_TARGET-20-PASXNR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXSF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXSF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXSF-09A-01D	DNA	EFO	SRS629172	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXSF-09A-01D A33288 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33288	SRX575227	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXSF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASXSF-09A-01D A33288 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33288_1_lane_dupsFlagged.bam	SRR1346464	@dbgap@:reads/SRP012000/SRS629172/SRX575227/SRR1346464/SRR1346464.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXSF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXSF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASXSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXSS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXSS-03A-01D	DNA	EFO	SRS633680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXSS-03A-01D A33448 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33448	SRX587974	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXSS-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASXSS-03A-01D A33448 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33448_1_lane_dupsFlagged.bam	SRR1373776	@dbgap@:reads/SRP012000/SRS633680/SRX587974/SRR1373776/SRR1373776.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXSS-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXSS-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASXSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXSS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXSS-03A-01D	DNA	EFO	SRS633680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXSS-03A-01D A33448 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33448	SRX587974	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXSS-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASXSS-03A-01D A33448 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33448_1_lane_dupsFlagged.bam	SRR1373776	@dbgap@:reads/SRP012000/SRS633680/SRX587974/SRR1373776/SRR1373776.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXSS-03A-01D_TARGET-20-PASXSS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXSS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXSS-03A-01D	DNA	EFO	SRS633680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXSS-03A-01D A33448 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33448	SRX587974	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXSS-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASXSS-03A-01D A33448 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33448_1_lane_dupsFlagged.bam	SRR1373776	@dbgap@:reads/SRP012000/SRS633680/SRX587974/SRR1373776/SRR1373776.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXSS-03A-01D_TARGET-20-PASXSS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXSS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXSS-14A-01D	DNA	EFO	SRS635767	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXSS-14A-01D A42328 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42328	SRX593603	"Specific Capture analysis of normal sample TARGET-20-PASXSS-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASXSS-14A-01D A42328 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42328_1_lane_dupsFlagged.bam	SRR1386044	@dbgap@:reads/SRP012000/SRS635767/SRX593603/SRR1386044/SRR1386044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXSS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXSS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASXSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXSS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXSS-14A-01D	DNA	EFO	SRS635767	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXSS-14A-01D A42328 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42328	SRX593603	"Specific Capture analysis of normal sample TARGET-20-PASXSS-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASXSS-14A-01D A42328 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42328_1_lane_dupsFlagged.bam	SRR1386044	@dbgap@:reads/SRP012000/SRS635767/SRX593603/SRR1386044/SRR1386044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXSS-03A-01D_TARGET-20-PASXSS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXSS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXSS-14A-01D	DNA	EFO	SRS635767	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXSS-14A-01D A42328 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42328	SRX593603	"Specific Capture analysis of normal sample TARGET-20-PASXSS-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASXSS-14A-01D A42328 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42328_1_lane_dupsFlagged.bam	SRR1386044	@dbgap@:reads/SRP012000/SRS635767/SRX593603/SRR1386044/SRR1386044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXSS-03A-01D_TARGET-20-PASXSS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXVC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXVC-09A-01D	DNA	EFO	SRS628954	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXVC-09A-01D A32344 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32344	SRX575010	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXVC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASXVC-09A-01D A32344 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32344_1_lane_dupsFlagged.bam	SRR1346171	@dbgap@:reads/SRP012000/SRS628954/SRX575010/SRR1346171/SRR1346171.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXVC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXVC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASXVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXVC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXVC-09A-01D	DNA	EFO	SRS628954	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXVC-09A-01D A32344 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32344	SRX575010	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXVC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASXVC-09A-01D A32344 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32344_1_lane_dupsFlagged.bam	SRR1346171	@dbgap@:reads/SRP012000/SRS628954/SRX575010/SRR1346171/SRR1346171.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXVC-09A-01D_TARGET-20-PASXVC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXVC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXVC-09A-01D	DNA	EFO	SRS628954	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXVC-09A-01D A32344 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32344	SRX575010	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXVC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASXVC-09A-01D A32344 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32344_1_lane_dupsFlagged.bam	SRR1346171	@dbgap@:reads/SRP012000/SRS628954/SRX575010/SRR1346171/SRR1346171.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXVC-09A-01D_TARGET-20-PASXVC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXVC-14A-01D	DNA	EFO	SRS635988	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXVC-14A-01D A42614 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42614	SRX593953	"Specific Capture analysis of normal sample TARGET-20-PASXVC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASXVC-14A-01D A42614 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42614_1_lane_dupsFlagged.bam	SRR1386481	@dbgap@:reads/SRP012000/SRS635988/SRX593953/SRR1386481/SRR1386481.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXVC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXVC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASXVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXVC-14A-01D	DNA	EFO	SRS635988	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXVC-14A-01D A42614 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42614	SRX593953	"Specific Capture analysis of normal sample TARGET-20-PASXVC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASXVC-14A-01D A42614 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42614_1_lane_dupsFlagged.bam	SRR1386481	@dbgap@:reads/SRP012000/SRS635988/SRX593953/SRR1386481/SRR1386481.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXVC-09A-01D_TARGET-20-PASXVC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXVC-14A-01D	DNA	EFO	SRS635988	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXVC-14A-01D A42614 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42614	SRX593953	"Specific Capture analysis of normal sample TARGET-20-PASXVC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASXVC-14A-01D A42614 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42614_1_lane_dupsFlagged.bam	SRR1386481	@dbgap@:reads/SRP012000/SRS635988/SRX593953/SRR1386481/SRR1386481.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXVC-09A-01D_TARGET-20-PASXVC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXVC-14A-01D	DNA	EFO	SRS635988	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXVC-14A-01D A42614 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42614	SRX593953	"Specific Capture analysis of normal sample TARGET-20-PASXVC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASXVC-14A-01D A42614 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42614_1_lane_dupsFlagged.bam	SRR1386481	@dbgap@:reads/SRP012000/SRS635988/SRX593953/SRR1386481/SRR1386481.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXVC-40A-01D_TARGET-20-PASXVC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXVC-14A-01D	DNA	EFO	SRS635988	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXVC-14A-01D A42614 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42614	SRX593953	"Specific Capture analysis of normal sample TARGET-20-PASXVC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASXVC-14A-01D A42614 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42614_1_lane_dupsFlagged.bam	SRR1386481	@dbgap@:reads/SRP012000/SRS635988/SRX593953/SRR1386481/SRR1386481.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXVC-40A-01D_TARGET-20-PASXVC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXVC-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXVC-40A-01D	DNA	EFO	SRS637318	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXVC-40A-01D A42220 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42220	SRX597689	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXVC-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASXVC-40A-01D A42220 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42220_1_lane_dupsFlagged.bam	SRR1395021	@dbgap@:reads/SRP012000/SRS637318/SRX597689/SRR1395021/SRR1395021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXVC-40A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXVC-40A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASXVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXVC-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXVC-40A-01D	DNA	EFO	SRS637318	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXVC-40A-01D A42220 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42220	SRX597689	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXVC-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASXVC-40A-01D A42220 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42220_1_lane_dupsFlagged.bam	SRR1395021	@dbgap@:reads/SRP012000/SRS637318/SRX597689/SRR1395021/SRR1395021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXVC-40A-01D_TARGET-20-PASXVC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXVC-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXVC-40A-01D	DNA	EFO	SRS637318	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXVC-40A-01D A42220 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42220	SRX597689	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXVC-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASXVC-40A-01D A42220 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42220_1_lane_dupsFlagged.bam	SRR1395021	@dbgap@:reads/SRP012000/SRS637318/SRX597689/SRR1395021/SRR1395021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXVC-40A-01D_TARGET-20-PASXVC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASXWN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXWN-03A-01D	DNA	EFO	SRS633948	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXWN-03A-01D A41456 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41456	SRX588554	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXWN-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASXWN-03A-01D A41456 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41456_1_lane_dupsFlagged.bam	SRR1374910	@dbgap@:reads/SRP012000/SRS633948/SRX588554/SRR1374910/SRR1374910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXWN-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXWN-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-02D	DNA	EFO	SRS628922	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXYG-09A-02D A32296 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32296	SRX574978	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXYG-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASXYG-09A-02D A32296 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32296_1_lane_dupsFlagged.bam	SRR1346169	@dbgap@:reads/SRP012000/SRS628922/SRX574978/SRR1346169/SRR1346169.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXYG-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXYG-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-02D	DNA	EFO	SRS628922	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXYG-09A-02D A32296 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32296	SRX574978	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXYG-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASXYG-09A-02D A32296 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32296_1_lane_dupsFlagged.bam	SRR1346169	@dbgap@:reads/SRP012000/SRS628922/SRX574978/SRR1346169/SRR1346169.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXYG-09A-02D_TARGET-20-PASXYG-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-02D	DNA	EFO	SRS628922	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXYG-09A-02D A32296 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32296	SRX574978	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASXYG-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASXYG-09A-02D A32296 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32296_1_lane_dupsFlagged.bam	SRR1346169	@dbgap@:reads/SRP012000/SRS628922/SRX574978/SRR1346169/SRR1346169.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXYG-09A-02D_TARGET-20-PASXYG-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-14A-02D	DNA	EFO	SRS489728	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXYG-14A-02D A42600 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42600	SRX593963	"Specific Capture analysis of normal sample TARGET-20-PASXYG-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASXYG-14A-02D A42600 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42600_1_lane_dupsFlagged.bam	SRR1386442	@dbgap@:reads/SRP012000/SRS489728/SRX593963/SRR1386442/SRR1386442.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASXYG-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASXYG-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-14A-02D	DNA	EFO	SRS489728	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXYG-14A-02D A42600 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42600	SRX593963	"Specific Capture analysis of normal sample TARGET-20-PASXYG-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASXYG-14A-02D A42600 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42600_1_lane_dupsFlagged.bam	SRR1386442	@dbgap@:reads/SRP012000/SRS489728/SRX593963/SRR1386442/SRR1386442.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXYG-09A-02D_TARGET-20-PASXYG-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-14A-02D	DNA	EFO	SRS489728	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXYG-14A-02D A42600 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42600	SRX593963	"Specific Capture analysis of normal sample TARGET-20-PASXYG-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASXYG-14A-02D A42600 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42600_1_lane_dupsFlagged.bam	SRR1386442	@dbgap@:reads/SRP012000/SRS489728/SRX593963/SRR1386442/SRR1386442.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASXYG-09A-02D_TARGET-20-PASXYG-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYCJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYCJ-09A-01D	DNA	EFO	SRS633956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYCJ-09A-01D A41457 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41457	SRX588561	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYCJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASYCJ-09A-01D A41457 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41457_1_lane_dupsFlagged.bam	SRR1374841	@dbgap@:reads/SRP012000/SRS633956/SRX588561/SRR1374841/SRR1374841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYCJ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYCJ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASYCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYCJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYCJ-09A-01D	DNA	EFO	SRS633956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYCJ-09A-01D A41457 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41457	SRX588561	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYCJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASYCJ-09A-01D A41457 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41457_1_lane_dupsFlagged.bam	SRR1374841	@dbgap@:reads/SRP012000/SRS633956/SRX588561/SRR1374841/SRR1374841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYCJ-09A-01D_TARGET-20-PASYCJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYCJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYCJ-09A-01D	DNA	EFO	SRS633956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYCJ-09A-01D A41457 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41457	SRX588561	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYCJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASYCJ-09A-01D A41457 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41457_1_lane_dupsFlagged.bam	SRR1374841	@dbgap@:reads/SRP012000/SRS633956/SRX588561/SRR1374841/SRR1374841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYCJ-09A-01D_TARGET-20-PASYCJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYCJ-14A-01D	DNA	EFO	SRS637562	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYCJ-14A-01D A42755 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42755	SRX598002	"Specific Capture analysis of normal sample TARGET-20-PASYCJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASYCJ-14A-01D A42755 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42755_1_lane_dupsFlagged.bam	SRR1395269	@dbgap@:reads/SRP012000/SRS637562/SRX598002/SRR1395269/SRR1395269.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYCJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYCJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASYCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYCJ-14A-01D	DNA	EFO	SRS637562	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYCJ-14A-01D A42755 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42755	SRX598002	"Specific Capture analysis of normal sample TARGET-20-PASYCJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASYCJ-14A-01D A42755 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42755_1_lane_dupsFlagged.bam	SRR1395269	@dbgap@:reads/SRP012000/SRS637562/SRX598002/SRR1395269/SRR1395269.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYCJ-09A-01D_TARGET-20-PASYCJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYCJ-14A-01D	DNA	EFO	SRS637562	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYCJ-14A-01D A42755 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42755	SRX598002	"Specific Capture analysis of normal sample TARGET-20-PASYCJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASYCJ-14A-01D A42755 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42755_1_lane_dupsFlagged.bam	SRR1395269	@dbgap@:reads/SRP012000/SRS637562/SRX598002/SRR1395269/SRR1395269.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYCJ-09A-01D_TARGET-20-PASYCJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDA-09A-01D	DNA	EFO	SRS629105	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYDA-09A-01D A33289 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33289	SRX575161	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYDA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASYDA-09A-01D A33289 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33289_1_lane_dupsFlagged.bam	SRR1346458	@dbgap@:reads/SRP012000/SRS629105/SRX575161/SRR1346458/SRR1346458.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYDA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYDA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASYDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDA-09A-01D	DNA	EFO	SRS629105	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYDA-09A-01D A33289 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33289	SRX575161	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYDA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASYDA-09A-01D A33289 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33289_1_lane_dupsFlagged.bam	SRR1346458	@dbgap@:reads/SRP012000/SRS629105/SRX575161/SRR1346458/SRR1346458.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYDA-09A-01D_TARGET-20-PASYDA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDA-09A-01D	DNA	EFO	SRS629105	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYDA-09A-01D A33289 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33289	SRX575161	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYDA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASYDA-09A-01D A33289 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33289_1_lane_dupsFlagged.bam	SRR1346458	@dbgap@:reads/SRP012000/SRS629105/SRX575161/SRR1346458/SRR1346458.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYDA-09A-01D_TARGET-20-PASYDA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDA-14A-01D	DNA	EFO	SRS635694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYDA-14A-01D A41698 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41698	SRX593517	"Specific Capture analysis of normal sample TARGET-20-PASYDA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASYDA-14A-01D A41698 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41698_1_lane_dupsFlagged.bam	SRR1385970	@dbgap@:reads/SRP012000/SRS635694/SRX593517/SRR1385970/SRR1385970.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYDA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYDA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASYDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDA-14A-01D	DNA	EFO	SRS635694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYDA-14A-01D A41698 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41698	SRX593517	"Specific Capture analysis of normal sample TARGET-20-PASYDA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASYDA-14A-01D A41698 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41698_1_lane_dupsFlagged.bam	SRR1385970	@dbgap@:reads/SRP012000/SRS635694/SRX593517/SRR1385970/SRR1385970.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYDA-09A-01D_TARGET-20-PASYDA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDA-14A-01D	DNA	EFO	SRS635694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYDA-14A-01D A41698 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41698	SRX593517	"Specific Capture analysis of normal sample TARGET-20-PASYDA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASYDA-14A-01D A41698 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41698_1_lane_dupsFlagged.bam	SRR1385970	@dbgap@:reads/SRP012000/SRS635694/SRX593517/SRR1385970/SRR1385970.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYDA-09A-01D_TARGET-20-PASYDA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDC-09A-01D	DNA	EFO	SRS628933	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYDC-09A-01D A32297 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32297	SRX574989	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYDC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASYDC-09A-01D A32297 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32297_1_lane_dupsFlagged.bam	SRR1346168	@dbgap@:reads/SRP012000/SRS628933/SRX574989/SRR1346168/SRR1346168.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYDC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYDC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYEJ-09A-02D	DNA	EFO	SRS628280	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYEJ-09A-02D A31221 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31221	SRX573335	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYEJ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASYEJ-09A-02D A31221 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31221_1_lane_dupsFlagged.bam	SRR1342611	@dbgap@:reads/SRP012000/SRS628280/SRX573335/SRR1342611/SRR1342611.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYEJ-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYEJ-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYEJ-09A-02D	DNA	EFO	SRS628280	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYEJ-09A-02D A31221 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31221	SRX573335	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYEJ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASYEJ-09A-02D A31221 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31221_1_lane_dupsFlagged.bam	SRR1342611	@dbgap@:reads/SRP012000/SRS628280/SRX573335/SRR1342611/SRR1342611.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYEJ-09A-02D_TARGET-20-PASYEJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYEJ-09A-02D	DNA	EFO	SRS628280	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYEJ-09A-02D A31221 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31221	SRX573335	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYEJ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASYEJ-09A-02D A31221 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31221_1_lane_dupsFlagged.bam	SRR1342611	@dbgap@:reads/SRP012000/SRS628280/SRX573335/SRR1342611/SRR1342611.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYEJ-09A-02D_TARGET-20-PASYEJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYEJ-14A-01D	DNA	EFO	SRS637401	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYEJ-14A-01D A42833 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42833	SRX597808	"Specific Capture analysis of normal sample TARGET-20-PASYEJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASYEJ-14A-01D A42833 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42833_1_lane_dupsFlagged.bam	SRR1395082	@dbgap@:reads/SRP012000/SRS637401/SRX597808/SRR1395082/SRR1395082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYEJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYEJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYEJ-14A-01D	DNA	EFO	SRS637401	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYEJ-14A-01D A42833 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42833	SRX597808	"Specific Capture analysis of normal sample TARGET-20-PASYEJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASYEJ-14A-01D A42833 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42833_1_lane_dupsFlagged.bam	SRR1395082	@dbgap@:reads/SRP012000/SRS637401/SRX597808/SRR1395082/SRR1395082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYEJ-09A-02D_TARGET-20-PASYEJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYEJ-14A-01D	DNA	EFO	SRS637401	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYEJ-14A-01D A42833 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42833	SRX597808	"Specific Capture analysis of normal sample TARGET-20-PASYEJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASYEJ-14A-01D A42833 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42833_1_lane_dupsFlagged.bam	SRR1395082	@dbgap@:reads/SRP012000/SRS637401/SRX597808/SRR1395082/SRR1395082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYEJ-09A-02D_TARGET-20-PASYEJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-04A-01D A42239 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42239	SRX597691	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYJI-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASYJI-04A-01D A42239 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42239_1_lane_dupsFlagged.bam	SRR1395043	@dbgap@:reads/SRP012000/SRS270796/SRX597691/SRR1395043/SRR1395043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYJI-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYJI-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-04A-01D A42239 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42239	SRX597691	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYJI-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASYJI-04A-01D A42239 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42239_1_lane_dupsFlagged.bam	SRR1395043	@dbgap@:reads/SRP012000/SRS270796/SRX597691/SRR1395043/SRR1395043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYJI-04A-01D_TARGET-20-PASYJI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-01D	DNA	EFO	SRS270796	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-04A-01D A42239 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42239	SRX597691	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYJI-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASYJI-04A-01D A42239 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42239_1_lane_dupsFlagged.bam	SRR1395043	@dbgap@:reads/SRP012000/SRS270796/SRX597691/SRR1395043/SRR1395043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYJI-04A-01D_TARGET-20-PASYJI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03D	DNA	EFO	SRS287516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-09A-03D A31238 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31238	SRX573386	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYJI-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASYJI-09A-03D A31238 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31238_1_lane_dupsFlagged.bam	SRR1342625	@dbgap@:reads/SRP012000/SRS287516/SRX573386/SRR1342625/SRR1342625.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYJI-09A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYJI-09A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03D	DNA	EFO	SRS287516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-09A-03D A31238 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31238	SRX573386	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYJI-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASYJI-09A-03D A31238 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31238_1_lane_dupsFlagged.bam	SRR1342625	@dbgap@:reads/SRP012000/SRS287516/SRX573386/SRR1342625/SRR1342625.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYJI-09A-03D_TARGET-20-PASYJI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03D	DNA	EFO	SRS287516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-09A-03D A31238 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31238	SRX573386	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYJI-09A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASYJI-09A-03D A31238 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31238_1_lane_dupsFlagged.bam	SRR1342625	@dbgap@:reads/SRP012000/SRS287516/SRX573386/SRR1342625/SRR1342625.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYJI-09A-03D_TARGET-20-PASYJI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-01D	DNA	EFO	SRS637505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-14A-01D A42933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42933	SRX597938	"Specific Capture analysis of normal sample TARGET-20-PASYJI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASYJI-14A-01D A42933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42933_1_lane_dupsFlagged.bam	SRR1395197	@dbgap@:reads/SRP012000/SRS637505/SRX597938/SRR1395197/SRR1395197.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYJI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYJI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-01D	DNA	EFO	SRS637505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-14A-01D A42933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42933	SRX597938	"Specific Capture analysis of normal sample TARGET-20-PASYJI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASYJI-14A-01D A42933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42933_1_lane_dupsFlagged.bam	SRR1395197	@dbgap@:reads/SRP012000/SRS637505/SRX597938/SRR1395197/SRR1395197.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYJI-04A-01D_TARGET-20-PASYJI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-01D	DNA	EFO	SRS637505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-14A-01D A42933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42933	SRX597938	"Specific Capture analysis of normal sample TARGET-20-PASYJI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASYJI-14A-01D A42933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42933_1_lane_dupsFlagged.bam	SRR1395197	@dbgap@:reads/SRP012000/SRS637505/SRX597938/SRR1395197/SRR1395197.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYJI-04A-01D_TARGET-20-PASYJI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-01D	DNA	EFO	SRS637505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-14A-01D A42933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42933	SRX597938	"Specific Capture analysis of normal sample TARGET-20-PASYJI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASYJI-14A-01D A42933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42933_1_lane_dupsFlagged.bam	SRR1395197	@dbgap@:reads/SRP012000/SRS637505/SRX597938/SRR1395197/SRR1395197.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYJI-09A-03D_TARGET-20-PASYJI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-14A-01D	DNA	EFO	SRS637505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-14A-01D A42933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42933	SRX597938	"Specific Capture analysis of normal sample TARGET-20-PASYJI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASYJI-14A-01D A42933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42933_1_lane_dupsFlagged.bam	SRR1395197	@dbgap@:reads/SRP012000/SRS637505/SRX597938/SRR1395197/SRR1395197.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYJI-09A-03D_TARGET-20-PASYJI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJL-09A-01D	DNA	EFO	SRS633626	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJL-09A-01D A33449 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33449	SRX587921	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYJL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASYJL-09A-01D A33449 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33449_1_lane_dupsFlagged.bam	SRR1373803	@dbgap@:reads/SRP012000/SRS633626/SRX587921/SRR1373803/SRR1373803.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYJL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYJL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASYRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYRE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYRE-03A-01D	DNA	EFO	SRS633951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYRE-03A-01D A41460 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41460	SRX588558	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYRE-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASYRE-03A-01D A41460 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41460_1_lane_dupsFlagged.bam	SRR1374830	@dbgap@:reads/SRP012000/SRS633951/SRX588558/SRR1374830/SRR1374830.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYRE-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYRE-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASYRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYRE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYRE-03A-01D	DNA	EFO	SRS633951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYRE-03A-01D A41460 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41460	SRX588558	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYRE-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASYRE-03A-01D A41460 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41460_1_lane_dupsFlagged.bam	SRR1374830	@dbgap@:reads/SRP012000/SRS633951/SRX588558/SRR1374830/SRR1374830.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYRE-03A-01D_TARGET-20-PASYRE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYRE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYRE-03A-01D	DNA	EFO	SRS633951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYRE-03A-01D A41460 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41460	SRX588558	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYRE-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASYRE-03A-01D A41460 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41460_1_lane_dupsFlagged.bam	SRR1374830	@dbgap@:reads/SRP012000/SRS633951/SRX588558/SRR1374830/SRR1374830.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYRE-03A-01D_TARGET-20-PASYRE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYRE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYRE-14A-01D	DNA	EFO	SRS635783	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYRE-14A-01D A42341 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42341	SRX593621	"Specific Capture analysis of normal sample TARGET-20-PASYRE-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASYRE-14A-01D A42341 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42341_1_lane_dupsFlagged.bam	SRR1386100	@dbgap@:reads/SRP012000/SRS635783/SRX593621/SRR1386100/SRR1386100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYRE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYRE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASYRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYRE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYRE-14A-01D	DNA	EFO	SRS635783	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYRE-14A-01D A42341 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42341	SRX593621	"Specific Capture analysis of normal sample TARGET-20-PASYRE-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASYRE-14A-01D A42341 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42341_1_lane_dupsFlagged.bam	SRR1386100	@dbgap@:reads/SRP012000/SRS635783/SRX593621/SRR1386100/SRR1386100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYRE-03A-01D_TARGET-20-PASYRE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYRE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYRE-14A-01D	DNA	EFO	SRS635783	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYRE-14A-01D A42341 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42341	SRX593621	"Specific Capture analysis of normal sample TARGET-20-PASYRE-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PASYRE-14A-01D A42341 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42341_1_lane_dupsFlagged.bam	SRR1386100	@dbgap@:reads/SRP012000/SRS635783/SRX593621/SRR1386100/SRR1386100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYRE-03A-01D_TARGET-20-PASYRE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYRR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYRR-04A-01D	DNA	EFO	SRS637307	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYRR-04A-01D A42235 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42235	SRX597672	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYRR-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASYRR-04A-01D A42235 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42235_1_lane_dupsFlagged.bam	SRR1395004	@dbgap@:reads/SRP012000/SRS637307/SRX597672/SRR1395004/SRR1395004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYRR-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYRR-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASYRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYRR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYRR-04A-01D	DNA	EFO	SRS637307	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYRR-04A-01D A42235 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42235	SRX597672	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYRR-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASYRR-04A-01D A42235 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42235_1_lane_dupsFlagged.bam	SRR1395004	@dbgap@:reads/SRP012000/SRS637307/SRX597672/SRR1395004/SRR1395004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYRR-04A-01D_TARGET-20-PASYRR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYRR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYRR-04A-01D	DNA	EFO	SRS637307	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYRR-04A-01D A42235 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42235	SRX597672	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYRR-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASYRR-04A-01D A42235 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42235_1_lane_dupsFlagged.bam	SRR1395004	@dbgap@:reads/SRP012000/SRS637307/SRX597672/SRR1395004/SRR1395004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYRR-04A-01D_TARGET-20-PASYRR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYRR-09A-01D	DNA	EFO	SRS633939	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYRR-09A-01D A41459 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41459	SRX588545	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYRR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASYRR-09A-01D A41459 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41459_1_lane_dupsFlagged.bam	SRR1374848	@dbgap@:reads/SRP012000/SRS633939/SRX588545/SRR1374848/SRR1374848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYRR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYRR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASYRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYRR-09A-01D	DNA	EFO	SRS633939	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYRR-09A-01D A41459 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41459	SRX588545	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYRR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASYRR-09A-01D A41459 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41459_1_lane_dupsFlagged.bam	SRR1374848	@dbgap@:reads/SRP012000/SRS633939/SRX588545/SRR1374848/SRR1374848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYRR-09A-01D_TARGET-20-PASYRR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYRR-09A-01D	DNA	EFO	SRS633939	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYRR-09A-01D A41459 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41459	SRX588545	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYRR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASYRR-09A-01D A41459 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41459_1_lane_dupsFlagged.bam	SRR1374848	@dbgap@:reads/SRP012000/SRS633939/SRX588545/SRR1374848/SRR1374848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYRR-09A-01D_TARGET-20-PASYRR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYRR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYRR-14A-01D	DNA	EFO	SRS635973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYRR-14A-01D A42628 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42628	SRX593936	"Specific Capture analysis of normal sample TARGET-20-PASYRR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASYRR-14A-01D A42628 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42628_1_lane_dupsFlagged.bam	SRR1386455	@dbgap@:reads/SRP012000/SRS635973/SRX593936/SRR1386455/SRR1386455.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYRR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYRR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASYRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYRR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYRR-14A-01D	DNA	EFO	SRS635973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYRR-14A-01D A42628 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42628	SRX593936	"Specific Capture analysis of normal sample TARGET-20-PASYRR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASYRR-14A-01D A42628 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42628_1_lane_dupsFlagged.bam	SRR1386455	@dbgap@:reads/SRP012000/SRS635973/SRX593936/SRR1386455/SRR1386455.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYRR-04A-01D_TARGET-20-PASYRR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYRR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYRR-14A-01D	DNA	EFO	SRS635973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYRR-14A-01D A42628 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42628	SRX593936	"Specific Capture analysis of normal sample TARGET-20-PASYRR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASYRR-14A-01D A42628 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42628_1_lane_dupsFlagged.bam	SRR1386455	@dbgap@:reads/SRP012000/SRS635973/SRX593936/SRR1386455/SRR1386455.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYRR-04A-01D_TARGET-20-PASYRR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYRR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYRR-14A-01D	DNA	EFO	SRS635973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYRR-14A-01D A42628 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42628	SRX593936	"Specific Capture analysis of normal sample TARGET-20-PASYRR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASYRR-14A-01D A42628 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42628_1_lane_dupsFlagged.bam	SRR1386455	@dbgap@:reads/SRP012000/SRS635973/SRX593936/SRR1386455/SRR1386455.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYRR-09A-01D_TARGET-20-PASYRR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYRR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYRR-14A-01D	DNA	EFO	SRS635973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYRR-14A-01D A42628 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42628	SRX593936	"Specific Capture analysis of normal sample TARGET-20-PASYRR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASYRR-14A-01D A42628 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42628_1_lane_dupsFlagged.bam	SRR1386455	@dbgap@:reads/SRP012000/SRS635973/SRX593936/SRR1386455/SRR1386455.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYRR-09A-01D_TARGET-20-PASYRR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYTG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYTG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYTG-09A-01D	DNA	EFO	SRS628924	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYTG-09A-01D A32298 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32298	SRX574980	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYTG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASYTG-09A-01D A32298 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32298_1_lane_dupsFlagged.bam	SRR1346137	@dbgap@:reads/SRP012000/SRS628924/SRX574980/SRR1346137/SRR1346137.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYTG-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYTG-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASYTG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYTG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYTG-09A-01D	DNA	EFO	SRS628924	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYTG-09A-01D A32298 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32298	SRX574980	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYTG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASYTG-09A-01D A32298 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32298_1_lane_dupsFlagged.bam	SRR1346137	@dbgap@:reads/SRP012000/SRS628924/SRX574980/SRR1346137/SRR1346137.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYTG-09A-01D_TARGET-20-PASYTG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYTG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYTG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYTG-09A-01D	DNA	EFO	SRS628924	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYTG-09A-01D A32298 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32298	SRX574980	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYTG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASYTG-09A-01D A32298 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32298_1_lane_dupsFlagged.bam	SRR1346137	@dbgap@:reads/SRP012000/SRS628924/SRX574980/SRR1346137/SRR1346137.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYTG-09A-01D_TARGET-20-PASYTG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYTG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYTG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYTG-14A-01D	DNA	EFO	SRS637447	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYTG-14A-01D A42873 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42873	SRX597864	"Specific Capture analysis of normal sample TARGET-20-PASYTG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASYTG-14A-01D A42873 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42873_1_lane_dupsFlagged.bam	SRR1395177	@dbgap@:reads/SRP012000/SRS637447/SRX597864/SRR1395177/SRR1395177.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYTG-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYTG-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASYTG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYTG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYTG-14A-01D	DNA	EFO	SRS637447	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYTG-14A-01D A42873 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42873	SRX597864	"Specific Capture analysis of normal sample TARGET-20-PASYTG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASYTG-14A-01D A42873 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42873_1_lane_dupsFlagged.bam	SRR1395177	@dbgap@:reads/SRP012000/SRS637447/SRX597864/SRR1395177/SRR1395177.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYTG-09A-01D_TARGET-20-PASYTG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYTG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYTG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYTG-14A-01D	DNA	EFO	SRS637447	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYTG-14A-01D A42873 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42873	SRX597864	"Specific Capture analysis of normal sample TARGET-20-PASYTG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASYTG-14A-01D A42873 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42873_1_lane_dupsFlagged.bam	SRR1395177	@dbgap@:reads/SRP012000/SRS637447/SRX597864/SRR1395177/SRR1395177.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYTG-09A-01D_TARGET-20-PASYTG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYTW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYTW-03A-01D	DNA	EFO	SRS633913	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYTW-03A-01D A41461 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41461	SRX588518	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYTW-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASYTW-03A-01D A41461 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41461_1_lane_dupsFlagged.bam	SRR1374894	@dbgap@:reads/SRP012000/SRS633913/SRX588518/SRR1374894/SRR1374894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYTW-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYTW-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASYTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYTW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYTW-03A-01D	DNA	EFO	SRS633913	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYTW-03A-01D A41461 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41461	SRX588518	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYTW-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASYTW-03A-01D A41461 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41461_1_lane_dupsFlagged.bam	SRR1374894	@dbgap@:reads/SRP012000/SRS633913/SRX588518/SRR1374894/SRR1374894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYTW-03A-01D_TARGET-20-PASYTW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYTW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYTW-03A-01D	DNA	EFO	SRS633913	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYTW-03A-01D A41461 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41461	SRX588518	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYTW-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASYTW-03A-01D A41461 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41461_1_lane_dupsFlagged.bam	SRR1374894	@dbgap@:reads/SRP012000/SRS633913/SRX588518/SRR1374894/SRR1374894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYTW-03A-01D_TARGET-20-PASYTW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYTW-14A-01D	DNA	EFO	SRS637423	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYTW-14A-01D A42860 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42860	SRX597832	"Specific Capture analysis of normal sample TARGET-20-PASYTW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASYTW-14A-01D A42860 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42860_1_lane_dupsFlagged.bam	SRR1395133	@dbgap@:reads/SRP012000/SRS637423/SRX597832/SRR1395133/SRR1395133.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYTW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYTW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASYTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYTW-14A-01D	DNA	EFO	SRS637423	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYTW-14A-01D A42860 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42860	SRX597832	"Specific Capture analysis of normal sample TARGET-20-PASYTW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASYTW-14A-01D A42860 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42860_1_lane_dupsFlagged.bam	SRR1395133	@dbgap@:reads/SRP012000/SRS637423/SRX597832/SRR1395133/SRR1395133.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYTW-03A-01D_TARGET-20-PASYTW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYTW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYTW-14A-01D	DNA	EFO	SRS637423	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYTW-14A-01D A42860 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42860	SRX597832	"Specific Capture analysis of normal sample TARGET-20-PASYTW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASYTW-14A-01D A42860 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42860_1_lane_dupsFlagged.bam	SRR1395133	@dbgap@:reads/SRP012000/SRS637423/SRX597832/SRR1395133/SRR1395133.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYTW-03A-01D_TARGET-20-PASYTW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYVX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYVX-09A-01D	DNA	EFO	SRS628921	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYVX-09A-01D A32299 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32299	SRX574977	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYVX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASYVX-09A-01D A32299 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32299_1_lane_dupsFlagged.bam	SRR1346174	@dbgap@:reads/SRP012000/SRS628921/SRX574977/SRR1346174/SRR1346174.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYVX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYVX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASYVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYVX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYVX-09A-01D	DNA	EFO	SRS628921	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYVX-09A-01D A32299 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32299	SRX574977	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYVX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASYVX-09A-01D A32299 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32299_1_lane_dupsFlagged.bam	SRR1346174	@dbgap@:reads/SRP012000/SRS628921/SRX574977/SRR1346174/SRR1346174.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYVX-09A-01D_TARGET-20-PASYVX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYVX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYVX-09A-01D	DNA	EFO	SRS628921	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYVX-09A-01D A32299 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32299	SRX574977	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYVX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASYVX-09A-01D A32299 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32299_1_lane_dupsFlagged.bam	SRR1346174	@dbgap@:reads/SRP012000/SRS628921/SRX574977/SRR1346174/SRR1346174.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYVX-09A-01D_TARGET-20-PASYVX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYVX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYVX-14A-01D	DNA	EFO	SRS637564	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYVX-14A-01D A42765 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42765	SRX598004	"Specific Capture analysis of normal sample TARGET-20-PASYVX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASYVX-14A-01D A42765 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42765_1_lane_dupsFlagged.bam	SRR1395240	@dbgap@:reads/SRP012000/SRS637564/SRX598004/SRR1395240/SRR1395240.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYVX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYVX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASYVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYVX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYVX-14A-01D	DNA	EFO	SRS637564	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYVX-14A-01D A42765 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42765	SRX598004	"Specific Capture analysis of normal sample TARGET-20-PASYVX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASYVX-14A-01D A42765 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42765_1_lane_dupsFlagged.bam	SRR1395240	@dbgap@:reads/SRP012000/SRS637564/SRX598004/SRR1395240/SRR1395240.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYVX-09A-01D_TARGET-20-PASYVX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYVX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYVX-14A-01D	DNA	EFO	SRS637564	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYVX-14A-01D A42765 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42765	SRX598004	"Specific Capture analysis of normal sample TARGET-20-PASYVX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASYVX-14A-01D A42765 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42765_1_lane_dupsFlagged.bam	SRR1395240	@dbgap@:reads/SRP012000/SRS637564/SRX598004/SRR1395240/SRR1395240.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYVX-09A-01D_TARGET-20-PASYVX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYWA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYWA-09A-01D	DNA	EFO	SRS628311	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYWA-09A-01D A31191 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31191	SRX573380	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYWA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASYWA-09A-01D A31191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31191_1_lane_dupsFlagged.bam	SRR1342651	@dbgap@:reads/SRP012000/SRS628311/SRX573380/SRR1342651/SRR1342651.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYWA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYWA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYWA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYWA-09A-01D	DNA	EFO	SRS628311	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYWA-09A-01D A31191 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31191	SRX573380	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYWA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASYWA-09A-01D A31191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31191_1_lane_dupsFlagged.bam	SRR1342651	@dbgap@:reads/SRP012000/SRS628311/SRX573380/SRR1342651/SRR1342651.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYWA-09A-01D_TARGET-20-PASYWA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYWA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYWA-09A-01D	DNA	EFO	SRS628311	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYWA-09A-01D A31191 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31191	SRX573380	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYWA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASYWA-09A-01D A31191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31191_1_lane_dupsFlagged.bam	SRR1342651	@dbgap@:reads/SRP012000/SRS628311/SRX573380/SRR1342651/SRR1342651.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYWA-09A-01D_TARGET-20-PASYWA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYWA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYWA-14A-01D	DNA	EFO	SRS635779	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYWA-14A-01D A42300 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42300	SRX593619	"Specific Capture analysis of normal sample TARGET-20-PASYWA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASYWA-14A-01D A42300 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42300_1_lane_dupsFlagged.bam	SRR1386098	@dbgap@:reads/SRP012000/SRS635779/SRX593619/SRR1386098/SRR1386098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYWA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYWA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYWA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYWA-14A-01D	DNA	EFO	SRS635779	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYWA-14A-01D A42300 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42300	SRX593619	"Specific Capture analysis of normal sample TARGET-20-PASYWA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASYWA-14A-01D A42300 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42300_1_lane_dupsFlagged.bam	SRR1386098	@dbgap@:reads/SRP012000/SRS635779/SRX593619/SRR1386098/SRR1386098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYWA-09A-01D_TARGET-20-PASYWA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYWA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYWA-14A-01D	DNA	EFO	SRS635779	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYWA-14A-01D A42300 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42300	SRX593619	"Specific Capture analysis of normal sample TARGET-20-PASYWA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASYWA-14A-01D A42300 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42300_1_lane_dupsFlagged.bam	SRR1386098	@dbgap@:reads/SRP012000/SRS635779/SRX593619/SRR1386098/SRR1386098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYWA-09A-01D_TARGET-20-PASYWA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYWV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYWV-09A-01D	DNA	EFO	SRS633941	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYWV-09A-01D A41462 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41462	SRX588547	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYWV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASYWV-09A-01D A41462 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41462_1_lane_dupsFlagged.bam	SRR1374874	@dbgap@:reads/SRP012000/SRS633941/SRX588547/SRR1374874/SRR1374874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYWV-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYWV-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASYWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYWV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYWV-09A-01D	DNA	EFO	SRS633941	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYWV-09A-01D A41462 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41462	SRX588547	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYWV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASYWV-09A-01D A41462 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41462_1_lane_dupsFlagged.bam	SRR1374874	@dbgap@:reads/SRP012000/SRS633941/SRX588547/SRR1374874/SRR1374874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYWV-09A-01D_TARGET-20-PASYWV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYWV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYWV-09A-01D	DNA	EFO	SRS633941	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYWV-09A-01D A41462 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41462	SRX588547	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYWV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASYWV-09A-01D A41462 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41462_1_lane_dupsFlagged.bam	SRR1374874	@dbgap@:reads/SRP012000/SRS633941/SRX588547/SRR1374874/SRR1374874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYWV-09A-01D_TARGET-20-PASYWV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYWV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYWV-14A-01D	DNA	EFO	SRS635991	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYWV-14A-01D A42577 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42577	SRX593957	"Specific Capture analysis of normal sample TARGET-20-PASYWV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASYWV-14A-01D A42577 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42577_1_lane_dupsFlagged.bam	SRR1386415	@dbgap@:reads/SRP012000/SRS635991/SRX593957/SRR1386415/SRR1386415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYWV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYWV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASYWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYWV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYWV-14A-01D	DNA	EFO	SRS635991	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYWV-14A-01D A42577 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42577	SRX593957	"Specific Capture analysis of normal sample TARGET-20-PASYWV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASYWV-14A-01D A42577 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42577_1_lane_dupsFlagged.bam	SRR1386415	@dbgap@:reads/SRP012000/SRS635991/SRX593957/SRR1386415/SRR1386415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYWV-09A-01D_TARGET-20-PASYWV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYWV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYWV-14A-01D	DNA	EFO	SRS635991	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYWV-14A-01D A42577 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42577	SRX593957	"Specific Capture analysis of normal sample TARGET-20-PASYWV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASYWV-14A-01D A42577 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42577_1_lane_dupsFlagged.bam	SRR1386415	@dbgap@:reads/SRP012000/SRS635991/SRX593957/SRR1386415/SRR1386415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYWV-09A-01D_TARGET-20-PASYWV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYYW-09A-01D	DNA	EFO	SRS628302	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYYW-09A-01D A31192 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31192	SRX573368	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYYW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASYYW-09A-01D A31192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31192_1_lane_dupsFlagged.bam	SRR1342623	@dbgap@:reads/SRP012000/SRS628302/SRX573368/SRR1342623/SRR1342623.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYYW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYYW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASYYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYYW-09A-01D	DNA	EFO	SRS628302	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYYW-09A-01D A31192 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31192	SRX573368	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYYW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASYYW-09A-01D A31192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31192_1_lane_dupsFlagged.bam	SRR1342623	@dbgap@:reads/SRP012000/SRS628302/SRX573368/SRR1342623/SRR1342623.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYYW-09A-01D_TARGET-20-PASYYW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYYW-09A-01D	DNA	EFO	SRS628302	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYYW-09A-01D A31192 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31192	SRX573368	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASYYW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASYYW-09A-01D A31192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31192_1_lane_dupsFlagged.bam	SRR1342623	@dbgap@:reads/SRP012000/SRS628302/SRX573368/SRR1342623/SRR1342623.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYYW-09A-01D_TARGET-20-PASYYW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASYYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYYW-14A-01D	DNA	EFO	SRS635934	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYYW-14A-01D A42523 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42523	SRX593895	"Specific Capture analysis of normal sample TARGET-20-PASYYW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASYYW-14A-01D A42523 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42523_1_lane_dupsFlagged.bam	SRR1386354	@dbgap@:reads/SRP012000/SRS635934/SRX593895/SRR1386354/SRR1386354.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASYYW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASYYW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASYYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYYW-14A-01D	DNA	EFO	SRS635934	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYYW-14A-01D A42523 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42523	SRX593895	"Specific Capture analysis of normal sample TARGET-20-PASYYW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASYYW-14A-01D A42523 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42523_1_lane_dupsFlagged.bam	SRR1386354	@dbgap@:reads/SRP012000/SRS635934/SRX593895/SRR1386354/SRR1386354.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYYW-09A-01D_TARGET-20-PASYYW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASYYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASYYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYYW-14A-01D	DNA	EFO	SRS635934	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYYW-14A-01D A42523 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42523	SRX593895	"Specific Capture analysis of normal sample TARGET-20-PASYYW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASYYW-14A-01D A42523 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42523_1_lane_dupsFlagged.bam	SRR1386354	@dbgap@:reads/SRP012000/SRS635934/SRX593895/SRR1386354/SRR1386354.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASYYW-09A-01D_TARGET-20-PASYYW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZAF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZAF-03A-01D	DNA	EFO	SRS633914	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZAF-03A-01D A41463 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41463	SRX588519	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZAF-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASZAF-03A-01D A41463 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41463_1_lane_dupsFlagged.bam	SRR1374846	@dbgap@:reads/SRP012000/SRS633914/SRX588519/SRR1374846/SRR1374846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZAF-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZAF-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASZAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZAF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZAF-03A-01D	DNA	EFO	SRS633914	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZAF-03A-01D A41463 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41463	SRX588519	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZAF-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASZAF-03A-01D A41463 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41463_1_lane_dupsFlagged.bam	SRR1374846	@dbgap@:reads/SRP012000/SRS633914/SRX588519/SRR1374846/SRR1374846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZAF-03A-01D_TARGET-20-PASZAF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZAF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZAF-03A-01D	DNA	EFO	SRS633914	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZAF-03A-01D A41463 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41463	SRX588519	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZAF-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASZAF-03A-01D A41463 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41463_1_lane_dupsFlagged.bam	SRR1374846	@dbgap@:reads/SRP012000/SRS633914/SRX588519/SRR1374846/SRR1374846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZAF-03A-01D_TARGET-20-PASZAF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZAF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZAF-14A-01D	DNA	EFO	SRS637377	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZAF-14A-01D A42834 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42834	SRX597782	"Specific Capture analysis of normal sample TARGET-20-PASZAF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASZAF-14A-01D A42834 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42834_1_lane_dupsFlagged.bam	SRR1395107	@dbgap@:reads/SRP012000/SRS637377/SRX597782/SRR1395107/SRR1395107.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZAF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZAF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASZAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZAF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZAF-14A-01D	DNA	EFO	SRS637377	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZAF-14A-01D A42834 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42834	SRX597782	"Specific Capture analysis of normal sample TARGET-20-PASZAF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASZAF-14A-01D A42834 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42834_1_lane_dupsFlagged.bam	SRR1395107	@dbgap@:reads/SRP012000/SRS637377/SRX597782/SRR1395107/SRR1395107.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZAF-03A-01D_TARGET-20-PASZAF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZAF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZAF-14A-01D	DNA	EFO	SRS637377	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZAF-14A-01D A42834 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42834	SRX597782	"Specific Capture analysis of normal sample TARGET-20-PASZAF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASZAF-14A-01D A42834 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42834_1_lane_dupsFlagged.bam	SRR1395107	@dbgap@:reads/SRP012000/SRS637377/SRX597782/SRR1395107/SRR1395107.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZAF-03A-01D_TARGET-20-PASZAF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZAI-09A-01D	DNA	EFO	SRS633950	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZAI-09A-01D A41464 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41464	SRX588556	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZAI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASZAI-09A-01D A41464 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41464_1_lane_dupsFlagged.bam	SRR1374877	@dbgap@:reads/SRP012000/SRS633950/SRX588556/SRR1374877/SRR1374877.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZAI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZAI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASZBM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZBM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZBM-09A-01D	DNA	EFO	SRS628964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZBM-09A-01D A32300 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32300	SRX575016	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZBM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASZBM-09A-01D A32300 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32300_1_lane_dupsFlagged.bam	SRR1346141	@dbgap@:reads/SRP012000/SRS628964/SRX575016/SRR1346141/SRR1346141.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZBM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZBM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASZBM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZBM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZBM-09A-01D	DNA	EFO	SRS628964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZBM-09A-01D A32300 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32300	SRX575016	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZBM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASZBM-09A-01D A32300 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32300_1_lane_dupsFlagged.bam	SRR1346141	@dbgap@:reads/SRP012000/SRS628964/SRX575016/SRR1346141/SRR1346141.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZBM-09A-01D_TARGET-20-PASZBM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZBM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZBM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZBM-09A-01D	DNA	EFO	SRS628964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZBM-09A-01D A32300 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32300	SRX575016	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZBM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASZBM-09A-01D A32300 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32300_1_lane_dupsFlagged.bam	SRR1346141	@dbgap@:reads/SRP012000/SRS628964/SRX575016/SRR1346141/SRR1346141.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZBM-09A-01D_TARGET-20-PASZBM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZBM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZBM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZBM-14A-01D	DNA	EFO	SRS637499	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZBM-14A-01D A42874 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42874	SRX597931	"Specific Capture analysis of normal sample TARGET-20-PASZBM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASZBM-14A-01D A42874 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42874_1_lane_dupsFlagged.bam	SRR1395157	@dbgap@:reads/SRP012000/SRS637499/SRX597931/SRR1395157/SRR1395157.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZBM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZBM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASZBM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZBM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZBM-14A-01D	DNA	EFO	SRS637499	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZBM-14A-01D A42874 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42874	SRX597931	"Specific Capture analysis of normal sample TARGET-20-PASZBM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASZBM-14A-01D A42874 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42874_1_lane_dupsFlagged.bam	SRR1395157	@dbgap@:reads/SRP012000/SRS637499/SRX597931/SRR1395157/SRR1395157.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZBM-09A-01D_TARGET-20-PASZBM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZBM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZBM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZBM-14A-01D	DNA	EFO	SRS637499	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZBM-14A-01D A42874 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42874	SRX597931	"Specific Capture analysis of normal sample TARGET-20-PASZBM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASZBM-14A-01D A42874 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42874_1_lane_dupsFlagged.bam	SRR1395157	@dbgap@:reads/SRP012000/SRS637499/SRX597931/SRR1395157/SRR1395157.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZBM-09A-01D_TARGET-20-PASZBM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZEB-09A-01D	DNA	EFO	SRS629189	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZEB-09A-01D A33290 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33290	SRX575246	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZEB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASZEB-09A-01D A33290 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33290_1_lane_dupsFlagged.bam	SRR1346494	@dbgap@:reads/SRP012000/SRS629189/SRX575246/SRR1346494/SRR1346494.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZEB-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZEB-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASZEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZEB-09A-01D	DNA	EFO	SRS629189	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZEB-09A-01D A33290 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33290	SRX575246	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZEB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASZEB-09A-01D A33290 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33290_1_lane_dupsFlagged.bam	SRR1346494	@dbgap@:reads/SRP012000/SRS629189/SRX575246/SRR1346494/SRR1346494.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZEB-09A-01D_TARGET-20-PASZEB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZEB-09A-01D	DNA	EFO	SRS629189	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZEB-09A-01D A33290 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33290	SRX575246	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZEB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASZEB-09A-01D A33290 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33290_1_lane_dupsFlagged.bam	SRR1346494	@dbgap@:reads/SRP012000/SRS629189/SRX575246/SRR1346494/SRR1346494.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZEB-09A-01D_TARGET-20-PASZEB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZEB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZEB-14A-01D	DNA	EFO	SRS636033	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZEB-14A-01D A42578 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42578	SRX594011	"Specific Capture analysis of normal sample TARGET-20-PASZEB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASZEB-14A-01D A42578 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42578_1_lane_dupsFlagged.bam	SRR1386471	@dbgap@:reads/SRP012000/SRS636033/SRX594011/SRR1386471/SRR1386471.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZEB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZEB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASZEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZEB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZEB-14A-01D	DNA	EFO	SRS636033	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZEB-14A-01D A42578 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42578	SRX594011	"Specific Capture analysis of normal sample TARGET-20-PASZEB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASZEB-14A-01D A42578 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42578_1_lane_dupsFlagged.bam	SRR1386471	@dbgap@:reads/SRP012000/SRS636033/SRX594011/SRR1386471/SRR1386471.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZEB-09A-01D_TARGET-20-PASZEB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZEB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZEB-14A-01D	DNA	EFO	SRS636033	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZEB-14A-01D A42578 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42578	SRX594011	"Specific Capture analysis of normal sample TARGET-20-PASZEB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PASZEB-14A-01D A42578 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42578_1_lane_dupsFlagged.bam	SRR1386471	@dbgap@:reads/SRP012000/SRS636033/SRX594011/SRR1386471/SRR1386471.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZEB-09A-01D_TARGET-20-PASZEB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZER-09A-01D	DNA	EFO	SRS633910	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZER-09A-01D A41465 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41465	SRX588515	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZER-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASZER-09A-01D A41465 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41465_1_lane_dupsFlagged.bam	SRR1374838	@dbgap@:reads/SRP012000/SRS633910/SRX588515/SRR1374838/SRR1374838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZER-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZER-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZER-09A-01D	DNA	EFO	SRS633910	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZER-09A-01D A41465 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41465	SRX588515	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZER-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASZER-09A-01D A41465 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41465_1_lane_dupsFlagged.bam	SRR1374838	@dbgap@:reads/SRP012000/SRS633910/SRX588515/SRR1374838/SRR1374838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZER-09A-01D_TARGET-20-PASZER-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZER-09A-01D	DNA	EFO	SRS633910	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZER-09A-01D A41465 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41465	SRX588515	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZER-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASZER-09A-01D A41465 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41465_1_lane_dupsFlagged.bam	SRR1374838	@dbgap@:reads/SRP012000/SRS633910/SRX588515/SRR1374838/SRR1374838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZER-09A-01D_TARGET-20-PASZER-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZER-14A-01D	DNA	EFO	SRS635649	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZER-14A-01D A41672 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41672	SRX593471	"Specific Capture analysis of normal sample TARGET-20-PASZER-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASZER-14A-01D A41672 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41672_1_lane_dupsFlagged.bam	SRR1385995	@dbgap@:reads/SRP012000/SRS635649/SRX593471/SRR1385995/SRR1385995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZER-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZER-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZER-14A-01D	DNA	EFO	SRS635649	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZER-14A-01D A41672 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41672	SRX593471	"Specific Capture analysis of normal sample TARGET-20-PASZER-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASZER-14A-01D A41672 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41672_1_lane_dupsFlagged.bam	SRR1385995	@dbgap@:reads/SRP012000/SRS635649/SRX593471/SRR1385995/SRR1385995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZER-09A-01D_TARGET-20-PASZER-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZER-14A-01D	DNA	EFO	SRS635649	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZER-14A-01D A41672 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41672	SRX593471	"Specific Capture analysis of normal sample TARGET-20-PASZER-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASZER-14A-01D A41672 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41672_1_lane_dupsFlagged.bam	SRR1385995	@dbgap@:reads/SRP012000/SRS635649/SRX593471/SRR1385995/SRR1385995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZER-09A-01D_TARGET-20-PASZER-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZJC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZJC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZJC-03A-01D	DNA	EFO	SRS628312	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZJC-03A-01D A31194 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31194	SRX573381	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZJC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASZJC-03A-01D A31194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31194_1_lane_dupsFlagged.bam	SRR1342664	@dbgap@:reads/SRP012000/SRS628312/SRX573381/SRR1342664/SRR1342664.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZJC-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZJC-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASZJC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZJC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZJC-03A-01D	DNA	EFO	SRS628312	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZJC-03A-01D A31194 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31194	SRX573381	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZJC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASZJC-03A-01D A31194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31194_1_lane_dupsFlagged.bam	SRR1342664	@dbgap@:reads/SRP012000/SRS628312/SRX573381/SRR1342664/SRR1342664.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZJC-03A-01D_TARGET-20-PASZJC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZJC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZJC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZJC-03A-01D	DNA	EFO	SRS628312	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZJC-03A-01D A31194 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31194	SRX573381	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZJC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASZJC-03A-01D A31194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31194_1_lane_dupsFlagged.bam	SRR1342664	@dbgap@:reads/SRP012000/SRS628312/SRX573381/SRR1342664/SRR1342664.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZJC-03A-01D_TARGET-20-PASZJC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZJC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZJC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZJC-10A-01D	DNA	EFO	SRS635768	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZJC-10A-01D A42305 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42305	SRX593602	"Specific Capture analysis of normal sample TARGET-20-PASZJC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASZJC-10A-01D A42305 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42305_1_lane_dupsFlagged.bam	SRR1386060	@dbgap@:reads/SRP012000/SRS635768/SRX593602/SRR1386060/SRR1386060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZJC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZJC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASZJC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZJC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZJC-10A-01D	DNA	EFO	SRS635768	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZJC-10A-01D A42305 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42305	SRX593602	"Specific Capture analysis of normal sample TARGET-20-PASZJC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASZJC-10A-01D A42305 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42305_1_lane_dupsFlagged.bam	SRR1386060	@dbgap@:reads/SRP012000/SRS635768/SRX593602/SRR1386060/SRR1386060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZJC-03A-01D_TARGET-20-PASZJC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZJC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZJC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZJC-10A-01D	DNA	EFO	SRS635768	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZJC-10A-01D A42305 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42305	SRX593602	"Specific Capture analysis of normal sample TARGET-20-PASZJC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASZJC-10A-01D A42305 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42305_1_lane_dupsFlagged.bam	SRR1386060	@dbgap@:reads/SRP012000/SRS635768/SRX593602/SRR1386060/SRR1386060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZJC-03A-01D_TARGET-20-PASZJC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZJR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZJR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZJR-09A-01D	DNA	EFO	SRS628915	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZJR-09A-01D A32301 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32301	SRX574971	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZJR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASZJR-09A-01D A32301 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32301_1_lane_dupsFlagged.bam	SRR1346136	@dbgap@:reads/SRP012000/SRS628915/SRX574971/SRR1346136/SRR1346136.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZJR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZJR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASZJR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZJR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZJR-09A-01D	DNA	EFO	SRS628915	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZJR-09A-01D A32301 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32301	SRX574971	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZJR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASZJR-09A-01D A32301 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32301_1_lane_dupsFlagged.bam	SRR1346136	@dbgap@:reads/SRP012000/SRS628915/SRX574971/SRR1346136/SRR1346136.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZJR-09A-01D_TARGET-20-PASZJR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZJR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZJR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZJR-09A-01D	DNA	EFO	SRS628915	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZJR-09A-01D A32301 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32301	SRX574971	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZJR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASZJR-09A-01D A32301 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32301_1_lane_dupsFlagged.bam	SRR1346136	@dbgap@:reads/SRP012000/SRS628915/SRX574971/SRR1346136/SRR1346136.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZJR-09A-01D_TARGET-20-PASZJR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZJR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZJR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZJR-14A-01D	DNA	EFO	SRS635911	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZJR-14A-01D A42552 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42552	SRX593871	"Specific Capture analysis of normal sample TARGET-20-PASZJR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASZJR-14A-01D A42552 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42552_1_lane_dupsFlagged.bam	SRR1386391	@dbgap@:reads/SRP012000/SRS635911/SRX593871/SRR1386391/SRR1386391.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZJR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZJR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASZJR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZJR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZJR-14A-01D	DNA	EFO	SRS635911	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZJR-14A-01D A42552 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42552	SRX593871	"Specific Capture analysis of normal sample TARGET-20-PASZJR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASZJR-14A-01D A42552 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42552_1_lane_dupsFlagged.bam	SRR1386391	@dbgap@:reads/SRP012000/SRS635911/SRX593871/SRR1386391/SRR1386391.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZJR-09A-01D_TARGET-20-PASZJR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZJR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZJR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZJR-14A-01D	DNA	EFO	SRS635911	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZJR-14A-01D A42552 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42552	SRX593871	"Specific Capture analysis of normal sample TARGET-20-PASZJR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASZJR-14A-01D A42552 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42552_1_lane_dupsFlagged.bam	SRR1386391	@dbgap@:reads/SRP012000/SRS635911/SRX593871/SRR1386391/SRR1386391.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZJR-09A-01D_TARGET-20-PASZJR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZJT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZJT-09A-01D	DNA	EFO	SRS628971	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZJT-09A-01D A32345 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32345	SRX575026	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZJT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASZJT-09A-01D A32345 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32345_1_lane_dupsFlagged.bam	SRR1346179	@dbgap@:reads/SRP012000/SRS628971/SRX575026/SRR1346179/SRR1346179.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZJT-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZJT-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASZJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZJT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZJT-09A-01D	DNA	EFO	SRS628971	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZJT-09A-01D A32345 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32345	SRX575026	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZJT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASZJT-09A-01D A32345 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32345_1_lane_dupsFlagged.bam	SRR1346179	@dbgap@:reads/SRP012000/SRS628971/SRX575026/SRR1346179/SRR1346179.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZJT-09A-01D_TARGET-20-PASZJT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZJT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZJT-09A-01D	DNA	EFO	SRS628971	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZJT-09A-01D A32345 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32345	SRX575026	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZJT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASZJT-09A-01D A32345 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32345_1_lane_dupsFlagged.bam	SRR1346179	@dbgap@:reads/SRP012000/SRS628971/SRX575026/SRR1346179/SRR1346179.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZJT-09A-01D_TARGET-20-PASZJT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZJT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZJT-14A-01D	DNA	EFO	SRS637385	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZJT-14A-01D A42863 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42863	SRX597788	"Specific Capture analysis of normal sample TARGET-20-PASZJT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASZJT-14A-01D A42863 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42863_1_lane_dupsFlagged.bam	SRR1395105	@dbgap@:reads/SRP012000/SRS637385/SRX597788/SRR1395105/SRR1395105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZJT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZJT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASZJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZJT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZJT-14A-01D	DNA	EFO	SRS637385	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZJT-14A-01D A42863 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42863	SRX597788	"Specific Capture analysis of normal sample TARGET-20-PASZJT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASZJT-14A-01D A42863 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42863_1_lane_dupsFlagged.bam	SRR1395105	@dbgap@:reads/SRP012000/SRS637385/SRX597788/SRR1395105/SRR1395105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZJT-09A-01D_TARGET-20-PASZJT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZJT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZJT-14A-01D	DNA	EFO	SRS637385	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZJT-14A-01D A42863 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42863	SRX597788	"Specific Capture analysis of normal sample TARGET-20-PASZJT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PASZJT-14A-01D A42863 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42863_1_lane_dupsFlagged.bam	SRR1395105	@dbgap@:reads/SRP012000/SRS637385/SRX597788/SRR1395105/SRR1395105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZJT-09A-01D_TARGET-20-PASZJT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01D	DNA	EFO	SRS287517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZLJ-09A-01D A31193 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31193	SRX573405	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZLJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASZLJ-09A-01D A31193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31193_1_lane_dupsFlagged.bam	SRR1342620	@dbgap@:reads/SRP012000/SRS287517/SRX573405/SRR1342620/SRR1342620.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZLJ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZLJ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01D	DNA	EFO	SRS287517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZLJ-09A-01D A31193 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31193	SRX573405	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZLJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASZLJ-09A-01D A31193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31193_1_lane_dupsFlagged.bam	SRR1342620	@dbgap@:reads/SRP012000/SRS287517/SRX573405/SRR1342620/SRR1342620.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZLJ-09A-01D_TARGET-20-PASZLJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01D	DNA	EFO	SRS287517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZLJ-09A-01D A31193 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31193	SRX573405	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZLJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASZLJ-09A-01D A31193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31193_1_lane_dupsFlagged.bam	SRR1342620	@dbgap@:reads/SRP012000/SRS287517/SRX573405/SRR1342620/SRR1342620.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZLJ-09A-01D_TARGET-20-PASZLJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-14A-01D	DNA	EFO	SRS637544	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZLJ-14A-01D A42759 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42759	SRX597982	"Specific Capture analysis of normal sample TARGET-20-PASZLJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASZLJ-14A-01D A42759 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42759_1_lane_dupsFlagged.bam	SRR1395284	@dbgap@:reads/SRP012000/SRS637544/SRX597982/SRR1395284/SRR1395284.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZLJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZLJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-14A-01D	DNA	EFO	SRS637544	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZLJ-14A-01D A42759 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42759	SRX597982	"Specific Capture analysis of normal sample TARGET-20-PASZLJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASZLJ-14A-01D A42759 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42759_1_lane_dupsFlagged.bam	SRR1395284	@dbgap@:reads/SRP012000/SRS637544/SRX597982/SRR1395284/SRR1395284.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZLJ-09A-01D_TARGET-20-PASZLJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-14A-01D	DNA	EFO	SRS637544	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZLJ-14A-01D A42759 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42759	SRX597982	"Specific Capture analysis of normal sample TARGET-20-PASZLJ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASZLJ-14A-01D A42759 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42759_1_lane_dupsFlagged.bam	SRR1395284	@dbgap@:reads/SRP012000/SRS637544/SRX597982/SRR1395284/SRR1395284.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZLJ-09A-01D_TARGET-20-PASZLJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZNB-09A-01D	DNA	EFO	SRS633976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZNB-09A-01D A41458 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41458	SRX588581	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZNB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASZNB-09A-01D A41458 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41458_1_lane_dupsFlagged.bam	SRR1374847	@dbgap@:reads/SRP012000/SRS633976/SRX588581/SRR1374847/SRR1374847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZNB-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZNB-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASZNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZNB-09A-01D	DNA	EFO	SRS633976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZNB-09A-01D A41458 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41458	SRX588581	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZNB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASZNB-09A-01D A41458 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41458_1_lane_dupsFlagged.bam	SRR1374847	@dbgap@:reads/SRP012000/SRS633976/SRX588581/SRR1374847/SRR1374847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZNB-09A-01D_TARGET-20-PASZNB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZNB-09A-01D	DNA	EFO	SRS633976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZNB-09A-01D A41458 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41458	SRX588581	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZNB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PASZNB-09A-01D A41458 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41458_1_lane_dupsFlagged.bam	SRR1374847	@dbgap@:reads/SRP012000/SRS633976/SRX588581/SRR1374847/SRR1374847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZNB-09A-01D_TARGET-20-PASZNB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZNB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZNB-14A-01D	DNA	EFO	SRS637567	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZNB-14A-01D A42757 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42757	SRX598007	"Specific Capture analysis of normal sample TARGET-20-PASZNB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASZNB-14A-01D A42757 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42757_1_lane_dupsFlagged.bam	SRR1395243	@dbgap@:reads/SRP012000/SRS637567/SRX598007/SRR1395243/SRR1395243.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZNB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZNB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASZNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZNB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZNB-14A-01D	DNA	EFO	SRS637567	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZNB-14A-01D A42757 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42757	SRX598007	"Specific Capture analysis of normal sample TARGET-20-PASZNB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASZNB-14A-01D A42757 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42757_1_lane_dupsFlagged.bam	SRR1395243	@dbgap@:reads/SRP012000/SRS637567/SRX598007/SRR1395243/SRR1395243.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZNB-09A-01D_TARGET-20-PASZNB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZNB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZNB-14A-01D	DNA	EFO	SRS637567	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZNB-14A-01D A42757 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42757	SRX598007	"Specific Capture analysis of normal sample TARGET-20-PASZNB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASZNB-14A-01D A42757 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42757_1_lane_dupsFlagged.bam	SRR1395243	@dbgap@:reads/SRP012000/SRS637567/SRX598007/SRR1395243/SRR1395243.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZNB-09A-01D_TARGET-20-PASZNB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZUT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZUT-09A-01D	DNA	EFO	SRS628893	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZUT-09A-01D A32302 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32302	SRX574949	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZUT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASZUT-09A-01D A32302 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32302_1_lane_dupsFlagged.bam	SRR1346148	@dbgap@:reads/SRP012000/SRS628893/SRX574949/SRR1346148/SRR1346148.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZUT-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZUT-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASZUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZUT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZUT-09A-01D	DNA	EFO	SRS628893	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZUT-09A-01D A32302 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32302	SRX574949	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZUT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASZUT-09A-01D A32302 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32302_1_lane_dupsFlagged.bam	SRR1346148	@dbgap@:reads/SRP012000/SRS628893/SRX574949/SRR1346148/SRR1346148.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZUT-09A-01D_TARGET-20-PASZUT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZUT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZUT-09A-01D	DNA	EFO	SRS628893	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZUT-09A-01D A32302 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32302	SRX574949	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZUT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASZUT-09A-01D A32302 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32302_1_lane_dupsFlagged.bam	SRR1346148	@dbgap@:reads/SRP012000/SRS628893/SRX574949/SRR1346148/SRR1346148.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZUT-09A-01D_TARGET-20-PASZUT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZUT-14A-01D	DNA	EFO	SRS637537	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZUT-14A-01D A42758 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42758	SRX597975	"Specific Capture analysis of normal sample TARGET-20-PASZUT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASZUT-14A-01D A42758 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42758_1_lane_dupsFlagged.bam	SRR1395236	@dbgap@:reads/SRP012000/SRS637537/SRX597975/SRR1395236/SRR1395236.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZUT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZUT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASZUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZUT-14A-01D	DNA	EFO	SRS637537	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZUT-14A-01D A42758 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42758	SRX597975	"Specific Capture analysis of normal sample TARGET-20-PASZUT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASZUT-14A-01D A42758 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42758_1_lane_dupsFlagged.bam	SRR1395236	@dbgap@:reads/SRP012000/SRS637537/SRX597975/SRR1395236/SRR1395236.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZUT-09A-01D_TARGET-20-PASZUT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZUT-14A-01D	DNA	EFO	SRS637537	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZUT-14A-01D A42758 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42758	SRX597975	"Specific Capture analysis of normal sample TARGET-20-PASZUT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PASZUT-14A-01D A42758 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42758_1_lane_dupsFlagged.bam	SRR1395236	@dbgap@:reads/SRP012000/SRS637537/SRX597975/SRR1395236/SRR1395236.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZUT-09A-01D_TARGET-20-PASZUT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZYU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZYU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZYU-03A-01D	DNA	EFO	SRS629111	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZYU-03A-01D A33291 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33291	SRX575167	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZYU-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASZYU-03A-01D A33291 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33291_1_lane_dupsFlagged.bam	SRR1346491	@dbgap@:reads/SRP012000/SRS629111/SRX575167/SRR1346491/SRR1346491.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZYU-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZYU-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASZYU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZYU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZYU-03A-01D	DNA	EFO	SRS629111	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZYU-03A-01D A33291 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33291	SRX575167	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZYU-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASZYU-03A-01D A33291 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33291_1_lane_dupsFlagged.bam	SRR1346491	@dbgap@:reads/SRP012000/SRS629111/SRX575167/SRR1346491/SRR1346491.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZYU-03A-01D_TARGET-20-PASZYU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZYU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZYU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZYU-03A-01D	DNA	EFO	SRS629111	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZYU-03A-01D A33291 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33291	SRX575167	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZYU-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASZYU-03A-01D A33291 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33291_1_lane_dupsFlagged.bam	SRR1346491	@dbgap@:reads/SRP012000/SRS629111/SRX575167/SRR1346491/SRR1346491.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZYU-03A-01D_TARGET-20-PASZYU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZYU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZYU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZYU-14A-01D	DNA	EFO	SRS635787	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZYU-14A-01D A42348 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42348	SRX593628	"Specific Capture analysis of normal sample TARGET-20-PASZYU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASZYU-14A-01D A42348 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42348_1_lane_dupsFlagged.bam	SRR1386082	@dbgap@:reads/SRP012000/SRS635787/SRX593628/SRR1386082/SRR1386082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZYU-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZYU-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASZYU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZYU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZYU-14A-01D	DNA	EFO	SRS635787	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZYU-14A-01D A42348 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42348	SRX593628	"Specific Capture analysis of normal sample TARGET-20-PASZYU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASZYU-14A-01D A42348 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42348_1_lane_dupsFlagged.bam	SRR1386082	@dbgap@:reads/SRP012000/SRS635787/SRX593628/SRR1386082/SRR1386082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZYU-03A-01D_TARGET-20-PASZYU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZYU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZYU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZYU-14A-01D	DNA	EFO	SRS635787	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZYU-14A-01D A42348 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42348	SRX593628	"Specific Capture analysis of normal sample TARGET-20-PASZYU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASZYU-14A-01D A42348 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42348_1_lane_dupsFlagged.bam	SRR1386082	@dbgap@:reads/SRP012000/SRS635787/SRX593628/SRR1386082/SRR1386082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZYU-03A-01D_TARGET-20-PASZYU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-04A-01D	DNA	EFO	SRS270801	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZZE-04A-01D A42263 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42263	SRX597707	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZZE-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASZZE-04A-01D A42263 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42263_1_lane_dupsFlagged.bam	SRR1394974	@dbgap@:reads/SRP012000/SRS270801/SRX597707/SRR1394974/SRR1394974.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZZE-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZZE-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-04A-01D	DNA	EFO	SRS270801	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZZE-04A-01D A42263 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42263	SRX597707	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZZE-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASZZE-04A-01D A42263 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42263_1_lane_dupsFlagged.bam	SRR1394974	@dbgap@:reads/SRP012000/SRS270801/SRX597707/SRR1394974/SRR1394974.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZZE-04A-01D_TARGET-20-PASZZE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-04A-01D	DNA	EFO	SRS270801	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZZE-04A-01D A42263 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42263	SRX597707	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZZE-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PASZZE-04A-01D A42263 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42263_1_lane_dupsFlagged.bam	SRR1394974	@dbgap@:reads/SRP012000/SRS270801/SRX597707/SRR1394974/SRR1394974.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZZE-04A-01D_TARGET-20-PASZZE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-09A-02D	DNA	EFO	SRS628966	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZZE-09A-02D A32303 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32303	SRX575022	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZZE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASZZE-09A-02D A32303 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32303_1_lane_dupsFlagged.bam	SRR1346176	@dbgap@:reads/SRP012000/SRS628966/SRX575022/SRR1346176/SRR1346176.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZZE-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZZE-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-09A-02D	DNA	EFO	SRS628966	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZZE-09A-02D A32303 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32303	SRX575022	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZZE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASZZE-09A-02D A32303 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32303_1_lane_dupsFlagged.bam	SRR1346176	@dbgap@:reads/SRP012000/SRS628966/SRX575022/SRR1346176/SRR1346176.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZZE-09A-02D_TARGET-20-PASZZE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-09A-02D	DNA	EFO	SRS628966	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZZE-09A-02D A32303 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32303	SRX575022	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZZE-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PASZZE-09A-02D A32303 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32303_1_lane_dupsFlagged.bam	SRR1346176	@dbgap@:reads/SRP012000/SRS628966/SRX575022/SRR1346176/SRR1346176.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZZE-09A-02D_TARGET-20-PASZZE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-14A-01D	DNA	EFO	SRS270802	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZZE-14A-01D A42929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42929	SRX597854	"Specific Capture analysis of normal sample TARGET-20-PASZZE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASZZE-14A-01D A42929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42929_1_lane_dupsFlagged.bam	SRR1395153	@dbgap@:reads/SRP012000/SRS270802/SRX597854/SRR1395153/SRR1395153.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZZE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZZE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-14A-01D	DNA	EFO	SRS270802	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZZE-14A-01D A42929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42929	SRX597854	"Specific Capture analysis of normal sample TARGET-20-PASZZE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASZZE-14A-01D A42929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42929_1_lane_dupsFlagged.bam	SRR1395153	@dbgap@:reads/SRP012000/SRS270802/SRX597854/SRR1395153/SRR1395153.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZZE-04A-01D_TARGET-20-PASZZE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-14A-01D	DNA	EFO	SRS270802	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZZE-14A-01D A42929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42929	SRX597854	"Specific Capture analysis of normal sample TARGET-20-PASZZE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASZZE-14A-01D A42929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42929_1_lane_dupsFlagged.bam	SRR1395153	@dbgap@:reads/SRP012000/SRS270802/SRX597854/SRR1395153/SRR1395153.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZZE-04A-01D_TARGET-20-PASZZE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-14A-01D	DNA	EFO	SRS270802	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZZE-14A-01D A42929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42929	SRX597854	"Specific Capture analysis of normal sample TARGET-20-PASZZE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASZZE-14A-01D A42929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42929_1_lane_dupsFlagged.bam	SRR1395153	@dbgap@:reads/SRP012000/SRS270802/SRX597854/SRR1395153/SRR1395153.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZZE-09A-02D_TARGET-20-PASZZE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZE-14A-01D	DNA	EFO	SRS270802	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZZE-14A-01D A42929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42929	SRX597854	"Specific Capture analysis of normal sample TARGET-20-PASZZE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PASZZE-14A-01D A42929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42929_1_lane_dupsFlagged.bam	SRR1395153	@dbgap@:reads/SRP012000/SRS270802/SRX597854/SRR1395153/SRR1395153.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZZE-09A-02D_TARGET-20-PASZZE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZL-09A-01D	DNA	EFO	SRS629186	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZZL-09A-01D A33292 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33292	SRX575243	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZZL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASZZL-09A-01D A33292 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33292_1_lane_dupsFlagged.bam	SRR1346500	@dbgap@:reads/SRP012000/SRS629186/SRX575243/SRR1346500/SRR1346500.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZZL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZZL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PASZZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZL-09A-01D	DNA	EFO	SRS629186	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZZL-09A-01D A33292 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33292	SRX575243	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZZL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASZZL-09A-01D A33292 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33292_1_lane_dupsFlagged.bam	SRR1346500	@dbgap@:reads/SRP012000/SRS629186/SRX575243/SRR1346500/SRR1346500.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZZL-09A-01D_TARGET-20-PASZZL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZL-09A-01D	DNA	EFO	SRS629186	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZZL-09A-01D A33292 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33292	SRX575243	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PASZZL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PASZZL-09A-01D A33292 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33292_1_lane_dupsFlagged.bam	SRR1346500	@dbgap@:reads/SRP012000/SRS629186/SRX575243/SRR1346500/SRR1346500.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZZL-09A-01D_TARGET-20-PASZZL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PASZZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZL-14A-01D	DNA	EFO	SRS637530	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZZL-14A-01D A42760 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42760	SRX597968	"Specific Capture analysis of normal sample TARGET-20-PASZZL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASZZL-14A-01D A42760 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42760_1_lane_dupsFlagged.bam	SRR1395245	@dbgap@:reads/SRP012000/SRS637530/SRX597968/SRR1395245/SRR1395245.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PASZZL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PASZZL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PASZZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZL-14A-01D	DNA	EFO	SRS637530	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZZL-14A-01D A42760 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42760	SRX597968	"Specific Capture analysis of normal sample TARGET-20-PASZZL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASZZL-14A-01D A42760 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42760_1_lane_dupsFlagged.bam	SRR1395245	@dbgap@:reads/SRP012000/SRS637530/SRX597968/SRR1395245/SRR1395245.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZZL-09A-01D_TARGET-20-PASZZL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PASZZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PASZZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZZL-14A-01D	DNA	EFO	SRS637530	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZZL-14A-01D A42760 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42760	SRX597968	"Specific Capture analysis of normal sample TARGET-20-PASZZL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PASZZL-14A-01D A42760 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42760_1_lane_dupsFlagged.bam	SRR1395245	@dbgap@:reads/SRP012000/SRS637530/SRX597968/SRR1395245/SRR1395245.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PASZZL-09A-01D_TARGET-20-PASZZL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATABK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATABK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABK-03A-01D	DNA	EFO	SRS628330	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATABK-03A-01D A31195 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31195	SRX573409	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATABK-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PATABK-03A-01D A31195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31195_1_lane_dupsFlagged.bam	SRR1342658	@dbgap@:reads/SRP012000/SRS628330/SRX573409/SRR1342658/SRR1342658.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATABK-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATABK-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATABK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATABK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABK-03A-01D	DNA	EFO	SRS628330	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATABK-03A-01D A31195 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31195	SRX573409	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATABK-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PATABK-03A-01D A31195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31195_1_lane_dupsFlagged.bam	SRR1342658	@dbgap@:reads/SRP012000/SRS628330/SRX573409/SRR1342658/SRR1342658.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATABK-03A-01D_TARGET-20-PATABK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATABK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATABK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABK-03A-01D	DNA	EFO	SRS628330	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATABK-03A-01D A31195 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31195	SRX573409	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATABK-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PATABK-03A-01D A31195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31195_1_lane_dupsFlagged.bam	SRR1342658	@dbgap@:reads/SRP012000/SRS628330/SRX573409/SRR1342658/SRR1342658.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATABK-03A-01D_TARGET-20-PATABK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATABK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATABK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABK-10A-01D	DNA	EFO	SRS635756	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATABK-10A-01D A42303 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42303	SRX593590	"Specific Capture analysis of normal sample TARGET-20-PATABK-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATABK-10A-01D A42303 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42303_1_lane_dupsFlagged.bam	SRR1386087	@dbgap@:reads/SRP012000/SRS635756/SRX593590/SRR1386087/SRR1386087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATABK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATABK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATABK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATABK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABK-10A-01D	DNA	EFO	SRS635756	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATABK-10A-01D A42303 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42303	SRX593590	"Specific Capture analysis of normal sample TARGET-20-PATABK-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATABK-10A-01D A42303 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42303_1_lane_dupsFlagged.bam	SRR1386087	@dbgap@:reads/SRP012000/SRS635756/SRX593590/SRR1386087/SRR1386087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATABK-03A-01D_TARGET-20-PATABK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATABK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATABK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABK-10A-01D	DNA	EFO	SRS635756	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATABK-10A-01D A42303 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42303	SRX593590	"Specific Capture analysis of normal sample TARGET-20-PATABK-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATABK-10A-01D A42303 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42303_1_lane_dupsFlagged.bam	SRR1386087	@dbgap@:reads/SRP012000/SRS635756/SRX593590/SRR1386087/SRR1386087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATABK-03A-01D_TARGET-20-PATABK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAEA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAEA-03A-01D	DNA	EFO	SRS628970	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAEA-03A-01D A32304 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32304	SRX575027	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAEA-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATAEA-03A-01D A32304 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32304_1_lane_dupsFlagged.bam	SRR1346205	@dbgap@:reads/SRP012000/SRS628970/SRX575027/SRR1346205/SRR1346205.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAEA-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAEA-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATAER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAER-09A-01D	DNA	EFO	SRS629114	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAER-09A-01D A33293 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33293	SRX575170	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAER-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATAER-09A-01D A33293 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33293_1_lane_dupsFlagged.bam	SRR1346448	@dbgap@:reads/SRP012000/SRS629114/SRX575170/SRR1346448/SRR1346448.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAER-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAER-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATAER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAER-09A-01D	DNA	EFO	SRS629114	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAER-09A-01D A33293 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33293	SRX575170	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAER-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATAER-09A-01D A33293 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33293_1_lane_dupsFlagged.bam	SRR1346448	@dbgap@:reads/SRP012000/SRS629114/SRX575170/SRR1346448/SRR1346448.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAER-09A-01D_TARGET-20-PATAER-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAER-09A-01D	DNA	EFO	SRS629114	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAER-09A-01D A33293 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33293	SRX575170	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAER-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATAER-09A-01D A33293 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33293_1_lane_dupsFlagged.bam	SRR1346448	@dbgap@:reads/SRP012000/SRS629114/SRX575170/SRR1346448/SRR1346448.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAER-09A-01D_TARGET-20-PATAER-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAER-14A-01D	DNA	EFO	SRS635648	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAER-14A-01D A41676 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41676	SRX593472	"Specific Capture analysis of normal sample TARGET-20-PATAER-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATAER-14A-01D A41676 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41676_1_lane_dupsFlagged.bam	SRR1385943	@dbgap@:reads/SRP012000/SRS635648/SRX593472/SRR1385943/SRR1385943.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAER-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAER-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATAER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAER-14A-01D	DNA	EFO	SRS635648	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAER-14A-01D A41676 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41676	SRX593472	"Specific Capture analysis of normal sample TARGET-20-PATAER-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATAER-14A-01D A41676 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41676_1_lane_dupsFlagged.bam	SRR1385943	@dbgap@:reads/SRP012000/SRS635648/SRX593472/SRR1385943/SRR1385943.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAER-09A-01D_TARGET-20-PATAER-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAER-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAER-14A-01D	DNA	EFO	SRS635648	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAER-14A-01D A41676 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41676	SRX593472	"Specific Capture analysis of normal sample TARGET-20-PATAER-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATAER-14A-01D A41676 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41676_1_lane_dupsFlagged.bam	SRR1385943	@dbgap@:reads/SRP012000/SRS635648/SRX593472/SRR1385943/SRR1385943.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAER-09A-01D_TARGET-20-PATAER-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAIJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAIJ-09A-01D	DNA	EFO	SRS628329	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAIJ-09A-01D A31196 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31196	SRX573408	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAIJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PATAIJ-09A-01D A31196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31196_1_lane_dupsFlagged.bam	SRR1342619	@dbgap@:reads/SRP012000/SRS628329/SRX573408/SRR1342619/SRR1342619.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAIJ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAIJ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAIJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAIJ-09A-01D	DNA	EFO	SRS628329	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAIJ-09A-01D A31196 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31196	SRX573408	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAIJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PATAIJ-09A-01D A31196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31196_1_lane_dupsFlagged.bam	SRR1342619	@dbgap@:reads/SRP012000/SRS628329/SRX573408/SRR1342619/SRR1342619.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAIJ-09A-01D_TARGET-20-PATAIJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAIJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAIJ-09A-01D	DNA	EFO	SRS628329	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAIJ-09A-01D A31196 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31196	SRX573408	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAIJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-20	TARGET-20-PATAIJ-09A-01D A31196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31196_1_lane_dupsFlagged.bam	SRR1342619	@dbgap@:reads/SRP012000/SRS628329/SRX573408/SRR1342619/SRR1342619.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAIJ-09A-01D_TARGET-20-PATAIJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAIJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAIJ-10A-01D	DNA	EFO	SRS635763	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAIJ-10A-01D A42292 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42292	SRX593599	"Specific Capture analysis of normal sample TARGET-20-PATAIJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATAIJ-10A-01D A42292 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42292_1_lane_dupsFlagged.bam	SRR1386084	@dbgap@:reads/SRP012000/SRS635763/SRX593599/SRR1386084/SRR1386084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAIJ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAIJ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAIJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAIJ-10A-01D	DNA	EFO	SRS635763	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAIJ-10A-01D A42292 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42292	SRX593599	"Specific Capture analysis of normal sample TARGET-20-PATAIJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATAIJ-10A-01D A42292 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42292_1_lane_dupsFlagged.bam	SRR1386084	@dbgap@:reads/SRP012000/SRS635763/SRX593599/SRR1386084/SRR1386084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAIJ-09A-01D_TARGET-20-PATAIJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAIJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAIJ-10A-01D	DNA	EFO	SRS635763	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAIJ-10A-01D A42292 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42292	SRX593599	"Specific Capture analysis of normal sample TARGET-20-PATAIJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATAIJ-10A-01D A42292 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42292_1_lane_dupsFlagged.bam	SRR1386084	@dbgap@:reads/SRP012000/SRS635763/SRX593599/SRR1386084/SRR1386084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAIJ-09A-01D_TARGET-20-PATAIJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAIY-09A-01D	DNA	EFO	SRS628942	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAIY-09A-01D A32305 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32305	SRX574998	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAIY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATAIY-09A-01D A32305 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32305_1_lane_dupsFlagged.bam	SRR1346199	@dbgap@:reads/SRP012000/SRS628942/SRX574998/SRR1346199/SRR1346199.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAIY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAIY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATAIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAIY-09A-01D	DNA	EFO	SRS628942	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAIY-09A-01D A32305 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32305	SRX574998	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAIY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATAIY-09A-01D A32305 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32305_1_lane_dupsFlagged.bam	SRR1346199	@dbgap@:reads/SRP012000/SRS628942/SRX574998/SRR1346199/SRR1346199.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAIY-09A-01D_TARGET-20-PATAIY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAIY-09A-01D	DNA	EFO	SRS628942	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAIY-09A-01D A32305 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32305	SRX574998	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAIY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATAIY-09A-01D A32305 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32305_1_lane_dupsFlagged.bam	SRR1346199	@dbgap@:reads/SRP012000/SRS628942/SRX574998/SRR1346199/SRR1346199.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAIY-09A-01D_TARGET-20-PATAIY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAIY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAIY-14A-01D	DNA	EFO	SRS635731	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAIY-14A-01D A42349 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42349	SRX593561	"Specific Capture analysis of normal sample TARGET-20-PATAIY-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATAIY-14A-01D A42349 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42349_1_lane_dupsFlagged.bam	SRR1386078	@dbgap@:reads/SRP012000/SRS635731/SRX593561/SRR1386078/SRR1386078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAIY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAIY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATAIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAIY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAIY-14A-01D	DNA	EFO	SRS635731	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAIY-14A-01D A42349 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42349	SRX593561	"Specific Capture analysis of normal sample TARGET-20-PATAIY-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATAIY-14A-01D A42349 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42349_1_lane_dupsFlagged.bam	SRR1386078	@dbgap@:reads/SRP012000/SRS635731/SRX593561/SRR1386078/SRR1386078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAIY-09A-01D_TARGET-20-PATAIY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAIY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAIY-14A-01D	DNA	EFO	SRS635731	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAIY-14A-01D A42349 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42349	SRX593561	"Specific Capture analysis of normal sample TARGET-20-PATAIY-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATAIY-14A-01D A42349 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42349_1_lane_dupsFlagged.bam	SRR1386078	@dbgap@:reads/SRP012000/SRS635731/SRX593561/SRR1386078/SRR1386078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAIY-09A-01D_TARGET-20-PATAIY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAKC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAKC-09A-01D	DNA	EFO	SRS633952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAKC-09A-01D A41467 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41467	SRX588559	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAKC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATAKC-09A-01D A41467 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41467_1_lane_dupsFlagged.bam	SRR1374855	@dbgap@:reads/SRP012000/SRS633952/SRX588559/SRR1374855/SRR1374855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAKC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAKC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATAKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAKC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAKC-09A-01D	DNA	EFO	SRS633952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAKC-09A-01D A41467 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41467	SRX588559	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAKC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATAKC-09A-01D A41467 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41467_1_lane_dupsFlagged.bam	SRR1374855	@dbgap@:reads/SRP012000/SRS633952/SRX588559/SRR1374855/SRR1374855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAKC-09A-01D_TARGET-20-PATAKC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAKC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAKC-09A-01D	DNA	EFO	SRS633952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAKC-09A-01D A41467 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41467	SRX588559	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAKC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATAKC-09A-01D A41467 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41467_1_lane_dupsFlagged.bam	SRR1374855	@dbgap@:reads/SRP012000/SRS633952/SRX588559/SRR1374855/SRR1374855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAKC-09A-01D_TARGET-20-PATAKC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAKC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAKC-14A-01D	DNA	EFO	SRS635778	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAKC-14A-01D A42293 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42293	SRX593618	"Specific Capture analysis of normal sample TARGET-20-PATAKC-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATAKC-14A-01D A42293 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42293_1_lane_dupsFlagged.bam	SRR1386054	@dbgap@:reads/SRP012000/SRS635778/SRX593618/SRR1386054/SRR1386054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAKC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAKC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATAKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAKC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAKC-14A-01D	DNA	EFO	SRS635778	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAKC-14A-01D A42293 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42293	SRX593618	"Specific Capture analysis of normal sample TARGET-20-PATAKC-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATAKC-14A-01D A42293 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42293_1_lane_dupsFlagged.bam	SRR1386054	@dbgap@:reads/SRP012000/SRS635778/SRX593618/SRR1386054/SRR1386054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAKC-09A-01D_TARGET-20-PATAKC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAKC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAKC-14A-01D	DNA	EFO	SRS635778	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAKC-14A-01D A42293 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42293	SRX593618	"Specific Capture analysis of normal sample TARGET-20-PATAKC-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATAKC-14A-01D A42293 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42293_1_lane_dupsFlagged.bam	SRR1386054	@dbgap@:reads/SRP012000/SRS635778/SRX593618/SRR1386054/SRR1386054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAKC-09A-01D_TARGET-20-PATAKC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAKZ-09A-01D	DNA	EFO	SRS629119	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAKZ-09A-01D A33294 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33294	SRX575175	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAKZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATAKZ-09A-01D A33294 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33294_1_lane_dupsFlagged.bam	SRR1346459	@dbgap@:reads/SRP012000/SRS629119/SRX575175/SRR1346459/SRR1346459.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAKZ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAKZ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATAKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAKZ-09A-01D	DNA	EFO	SRS629119	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAKZ-09A-01D A33294 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33294	SRX575175	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAKZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATAKZ-09A-01D A33294 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33294_1_lane_dupsFlagged.bam	SRR1346459	@dbgap@:reads/SRP012000/SRS629119/SRX575175/SRR1346459/SRR1346459.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAKZ-09A-01D_TARGET-20-PATAKZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAKZ-09A-01D	DNA	EFO	SRS629119	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAKZ-09A-01D A33294 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33294	SRX575175	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAKZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATAKZ-09A-01D A33294 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33294_1_lane_dupsFlagged.bam	SRR1346459	@dbgap@:reads/SRP012000/SRS629119/SRX575175/SRR1346459/SRR1346459.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAKZ-09A-01D_TARGET-20-PATAKZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAKZ-14A-01D	DNA	EFO	SRS637525	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAKZ-14A-01D A42754 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42754	SRX597963	"Specific Capture analysis of normal sample TARGET-20-PATAKZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATAKZ-14A-01D A42754 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42754_1_lane_dupsFlagged.bam	SRR1395231	@dbgap@:reads/SRP012000/SRS637525/SRX597963/SRR1395231/SRR1395231.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAKZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAKZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATAKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAKZ-14A-01D	DNA	EFO	SRS637525	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAKZ-14A-01D A42754 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42754	SRX597963	"Specific Capture analysis of normal sample TARGET-20-PATAKZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATAKZ-14A-01D A42754 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42754_1_lane_dupsFlagged.bam	SRR1395231	@dbgap@:reads/SRP012000/SRS637525/SRX597963/SRR1395231/SRR1395231.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAKZ-09A-01D_TARGET-20-PATAKZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAKZ-14A-01D	DNA	EFO	SRS637525	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAKZ-14A-01D A42754 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42754	SRX597963	"Specific Capture analysis of normal sample TARGET-20-PATAKZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATAKZ-14A-01D A42754 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42754_1_lane_dupsFlagged.bam	SRR1395231	@dbgap@:reads/SRP012000/SRS637525/SRX597963/SRR1395231/SRR1395231.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAKZ-09A-01D_TARGET-20-PATAKZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATALD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATALD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATALD-09A-01D	DNA	EFO	SRS633963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATALD-09A-01D A41466 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41466	SRX588569	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATALD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATALD-09A-01D A41466 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41466_1_lane_dupsFlagged.bam	SRR1374845	@dbgap@:reads/SRP012000/SRS633963/SRX588569/SRR1374845/SRR1374845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATALD-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATALD-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATALD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATALD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATALD-09A-01D	DNA	EFO	SRS633963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATALD-09A-01D A41466 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41466	SRX588569	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATALD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATALD-09A-01D A41466 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41466_1_lane_dupsFlagged.bam	SRR1374845	@dbgap@:reads/SRP012000/SRS633963/SRX588569/SRR1374845/SRR1374845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATALD-09A-01D_TARGET-20-PATALD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATALD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATALD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATALD-09A-01D	DNA	EFO	SRS633963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATALD-09A-01D A41466 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41466	SRX588569	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATALD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATALD-09A-01D A41466 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41466_1_lane_dupsFlagged.bam	SRR1374845	@dbgap@:reads/SRP012000/SRS633963/SRX588569/SRR1374845/SRR1374845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATALD-09A-01D_TARGET-20-PATALD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATALD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATALD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATALD-14A-01D	DNA	EFO	SRS636001	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATALD-14A-01D A42580 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42580	SRX593971	"Specific Capture analysis of normal sample TARGET-20-PATALD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATALD-14A-01D A42580 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42580_1_lane_dupsFlagged.bam	SRR1386436	@dbgap@:reads/SRP012000/SRS636001/SRX593971/SRR1386436/SRR1386436.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATALD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATALD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATALD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATALD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATALD-14A-01D	DNA	EFO	SRS636001	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATALD-14A-01D A42580 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42580	SRX593971	"Specific Capture analysis of normal sample TARGET-20-PATALD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATALD-14A-01D A42580 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42580_1_lane_dupsFlagged.bam	SRR1386436	@dbgap@:reads/SRP012000/SRS636001/SRX593971/SRR1386436/SRR1386436.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATALD-09A-01D_TARGET-20-PATALD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATALD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATALD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATALD-14A-01D	DNA	EFO	SRS636001	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATALD-14A-01D A42580 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42580	SRX593971	"Specific Capture analysis of normal sample TARGET-20-PATALD-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATALD-14A-01D A42580 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42580_1_lane_dupsFlagged.bam	SRR1386436	@dbgap@:reads/SRP012000/SRS636001/SRX593971/SRR1386436/SRR1386436.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATALD-09A-01D_TARGET-20-PATALD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATANY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATANY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATANY-09A-01D	DNA	EFO	SRS633905	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATANY-09A-01D A41468 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41468	SRX588509	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATANY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATANY-09A-01D A41468 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41468_1_lane_dupsFlagged.bam	SRR1374858	@dbgap@:reads/SRP012000/SRS633905/SRX588509/SRR1374858/SRR1374858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATANY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATANY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATANY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATANY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATANY-09A-01D	DNA	EFO	SRS633905	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATANY-09A-01D A41468 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41468	SRX588509	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATANY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATANY-09A-01D A41468 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41468_1_lane_dupsFlagged.bam	SRR1374858	@dbgap@:reads/SRP012000/SRS633905/SRX588509/SRR1374858/SRR1374858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATANY-09A-01D_TARGET-20-PATANY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATANY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATANY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATANY-09A-01D	DNA	EFO	SRS633905	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATANY-09A-01D A41468 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41468	SRX588509	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATANY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATANY-09A-01D A41468 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41468_1_lane_dupsFlagged.bam	SRR1374858	@dbgap@:reads/SRP012000/SRS633905/SRX588509/SRR1374858/SRR1374858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATANY-09A-01D_TARGET-20-PATANY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATANY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATANY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATANY-14A-01D	DNA	EFO	SRS635984	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATANY-14A-01D A42615 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42615	SRX593949	"Specific Capture analysis of normal sample TARGET-20-PATANY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATANY-14A-01D A42615 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42615_1_lane_dupsFlagged.bam	SRR1386502	@dbgap@:reads/SRP012000/SRS635984/SRX593949/SRR1386502/SRR1386502.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATANY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATANY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATANY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATANY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATANY-14A-01D	DNA	EFO	SRS635984	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATANY-14A-01D A42615 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42615	SRX593949	"Specific Capture analysis of normal sample TARGET-20-PATANY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATANY-14A-01D A42615 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42615_1_lane_dupsFlagged.bam	SRR1386502	@dbgap@:reads/SRP012000/SRS635984/SRX593949/SRR1386502/SRR1386502.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATANY-09A-01D_TARGET-20-PATANY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATANY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATANY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATANY-14A-01D	DNA	EFO	SRS635984	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATANY-14A-01D A42615 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42615	SRX593949	"Specific Capture analysis of normal sample TARGET-20-PATANY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATANY-14A-01D A42615 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42615_1_lane_dupsFlagged.bam	SRR1386502	@dbgap@:reads/SRP012000/SRS635984/SRX593949/SRR1386502/SRR1386502.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATANY-09A-01D_TARGET-20-PATANY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-04A-02D	DNA	EFO	SRS637539	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAST-04A-02D A42724 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42724	SRX597977	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAST-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATAST-04A-02D A42724 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42724_1_lane_dupsFlagged.bam	SRR1395237	@dbgap@:reads/SRP012000/SRS637539/SRX597977/SRR1395237/SRR1395237.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAST-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAST-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-04A-02D	DNA	EFO	SRS637539	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAST-04A-02D A42724 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42724	SRX597977	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAST-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATAST-04A-02D A42724 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42724_1_lane_dupsFlagged.bam	SRR1395237	@dbgap@:reads/SRP012000/SRS637539/SRX597977/SRR1395237/SRR1395237.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAST-04A-02D_TARGET-20-PATAST-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-04A-02D	DNA	EFO	SRS637539	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAST-04A-02D A42724 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42724	SRX597977	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAST-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATAST-04A-02D A42724 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42724_1_lane_dupsFlagged.bam	SRR1395237	@dbgap@:reads/SRP012000/SRS637539/SRX597977/SRR1395237/SRR1395237.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAST-04A-02D_TARGET-20-PATAST-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-02D	DNA	EFO	SRS628945	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAST-09A-02D A32306 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32306	SRX575001	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAST-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATAST-09A-02D A32306 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32306_1_lane_dupsFlagged.bam	SRR1346132	@dbgap@:reads/SRP012000/SRS628945/SRX575001/SRR1346132/SRR1346132.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAST-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAST-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-02D	DNA	EFO	SRS628945	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAST-09A-02D A32306 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32306	SRX575001	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAST-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATAST-09A-02D A32306 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32306_1_lane_dupsFlagged.bam	SRR1346132	@dbgap@:reads/SRP012000/SRS628945/SRX575001/SRR1346132/SRR1346132.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAST-09A-02D_TARGET-20-PATAST-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-02D	DNA	EFO	SRS628945	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAST-09A-02D A32306 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32306	SRX575001	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAST-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATAST-09A-02D A32306 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32306_1_lane_dupsFlagged.bam	SRR1346132	@dbgap@:reads/SRP012000/SRS628945/SRX575001/SRR1346132/SRR1346132.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAST-09A-02D_TARGET-20-PATAST-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-14A-01D	DNA	EFO	SRS635993	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAST-14A-01D A42596 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42596	SRX593959	"Specific Capture analysis of normal sample TARGET-20-PATAST-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATAST-14A-01D A42596 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42596_1_lane_dupsFlagged.bam	SRR1386503	@dbgap@:reads/SRP012000/SRS635993/SRX593959/SRR1386503/SRR1386503.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAST-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAST-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-14A-01D	DNA	EFO	SRS635993	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAST-14A-01D A42596 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42596	SRX593959	"Specific Capture analysis of normal sample TARGET-20-PATAST-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATAST-14A-01D A42596 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42596_1_lane_dupsFlagged.bam	SRR1386503	@dbgap@:reads/SRP012000/SRS635993/SRX593959/SRR1386503/SRR1386503.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAST-04A-02D_TARGET-20-PATAST-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-14A-01D	DNA	EFO	SRS635993	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAST-14A-01D A42596 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42596	SRX593959	"Specific Capture analysis of normal sample TARGET-20-PATAST-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATAST-14A-01D A42596 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42596_1_lane_dupsFlagged.bam	SRR1386503	@dbgap@:reads/SRP012000/SRS635993/SRX593959/SRR1386503/SRR1386503.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAST-04A-02D_TARGET-20-PATAST-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-14A-01D	DNA	EFO	SRS635993	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAST-14A-01D A42596 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42596	SRX593959	"Specific Capture analysis of normal sample TARGET-20-PATAST-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATAST-14A-01D A42596 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42596_1_lane_dupsFlagged.bam	SRR1386503	@dbgap@:reads/SRP012000/SRS635993/SRX593959/SRR1386503/SRR1386503.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAST-09A-02D_TARGET-20-PATAST-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-14A-01D	DNA	EFO	SRS635993	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAST-14A-01D A42596 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42596	SRX593959	"Specific Capture analysis of normal sample TARGET-20-PATAST-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATAST-14A-01D A42596 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42596_1_lane_dupsFlagged.bam	SRR1386503	@dbgap@:reads/SRP012000/SRS635993/SRX593959/SRR1386503/SRR1386503.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAST-09A-02D_TARGET-20-PATAST-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAUU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAUU-04A-01D	DNA	EFO	SRS637535	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAUU-04A-01D A42729 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42729	SRX597973	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAUU-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATAUU-04A-01D A42729 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42729_1_lane_dupsFlagged.bam	SRR1395291	@dbgap@:reads/SRP012000/SRS637535/SRX597973/SRR1395291/SRR1395291.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAUU-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAUU-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATAUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAUU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAUU-04A-01D	DNA	EFO	SRS637535	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAUU-04A-01D A42729 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42729	SRX597973	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAUU-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATAUU-04A-01D A42729 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42729_1_lane_dupsFlagged.bam	SRR1395291	@dbgap@:reads/SRP012000/SRS637535/SRX597973/SRR1395291/SRR1395291.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAUU-04A-01D_TARGET-20-PATAUU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAUU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAUU-04A-01D	DNA	EFO	SRS637535	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAUU-04A-01D A42729 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42729	SRX597973	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAUU-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATAUU-04A-01D A42729 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42729_1_lane_dupsFlagged.bam	SRR1395291	@dbgap@:reads/SRP012000/SRS637535/SRX597973/SRR1395291/SRR1395291.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAUU-04A-01D_TARGET-20-PATAUU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAUU-09A-01D	DNA	EFO	SRS635587	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAUU-09A-01D A41912 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41912	SRX593405	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAUU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATAUU-09A-01D A41912 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41912_1_lane_dupsFlagged.bam	SRR1385904	@dbgap@:reads/SRP012000/SRS635587/SRX593405/SRR1385904/SRR1385904.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAUU-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAUU-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATAUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAUU-09A-01D	DNA	EFO	SRS635587	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAUU-09A-01D A41912 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41912	SRX593405	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAUU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATAUU-09A-01D A41912 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41912_1_lane_dupsFlagged.bam	SRR1385904	@dbgap@:reads/SRP012000/SRS635587/SRX593405/SRR1385904/SRR1385904.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAUU-09A-01D_TARGET-20-PATAUU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAUU-09A-01D	DNA	EFO	SRS635587	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAUU-09A-01D A41912 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41912	SRX593405	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAUU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATAUU-09A-01D A41912 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41912_1_lane_dupsFlagged.bam	SRR1385904	@dbgap@:reads/SRP012000/SRS635587/SRX593405/SRR1385904/SRR1385904.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAUU-09A-01D_TARGET-20-PATAUU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAUU-14A-01D	DNA	EFO	SRS637411	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAUU-14A-01D A42835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42835	SRX597819	"Specific Capture analysis of normal sample TARGET-20-PATAUU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATAUU-14A-01D A42835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42835_1_lane_dupsFlagged.bam	SRR1395108	@dbgap@:reads/SRP012000/SRS637411/SRX597819/SRR1395108/SRR1395108.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAUU-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAUU-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATAUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAUU-14A-01D	DNA	EFO	SRS637411	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAUU-14A-01D A42835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42835	SRX597819	"Specific Capture analysis of normal sample TARGET-20-PATAUU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATAUU-14A-01D A42835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42835_1_lane_dupsFlagged.bam	SRR1395108	@dbgap@:reads/SRP012000/SRS637411/SRX597819/SRR1395108/SRR1395108.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAUU-04A-01D_TARGET-20-PATAUU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAUU-14A-01D	DNA	EFO	SRS637411	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAUU-14A-01D A42835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42835	SRX597819	"Specific Capture analysis of normal sample TARGET-20-PATAUU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATAUU-14A-01D A42835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42835_1_lane_dupsFlagged.bam	SRR1395108	@dbgap@:reads/SRP012000/SRS637411/SRX597819/SRR1395108/SRR1395108.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAUU-04A-01D_TARGET-20-PATAUU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAUU-14A-01D	DNA	EFO	SRS637411	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAUU-14A-01D A42835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42835	SRX597819	"Specific Capture analysis of normal sample TARGET-20-PATAUU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATAUU-14A-01D A42835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42835_1_lane_dupsFlagged.bam	SRR1395108	@dbgap@:reads/SRP012000/SRS637411/SRX597819/SRR1395108/SRR1395108.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAUU-09A-01D_TARGET-20-PATAUU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAUU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAUU-14A-01D	DNA	EFO	SRS637411	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAUU-14A-01D A42835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42835	SRX597819	"Specific Capture analysis of normal sample TARGET-20-PATAUU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATAUU-14A-01D A42835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42835_1_lane_dupsFlagged.bam	SRR1395108	@dbgap@:reads/SRP012000/SRS637411/SRX597819/SRR1395108/SRR1395108.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAUU-09A-01D_TARGET-20-PATAUU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAVF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAVF-09A-01D	DNA	EFO	SRS633943	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAVF-09A-01D A41469 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41469	SRX588549	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAVF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATAVF-09A-01D A41469 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41469_1_lane_dupsFlagged.bam	SRR1374826	@dbgap@:reads/SRP012000/SRS633943/SRX588549/SRR1374826/SRR1374826.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAVF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAVF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATAVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAVF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAVF-09A-01D	DNA	EFO	SRS633943	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAVF-09A-01D A41469 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41469	SRX588549	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAVF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATAVF-09A-01D A41469 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41469_1_lane_dupsFlagged.bam	SRR1374826	@dbgap@:reads/SRP012000/SRS633943/SRX588549/SRR1374826/SRR1374826.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAVF-09A-01D_TARGET-20-PATAVF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAVF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAVF-09A-01D	DNA	EFO	SRS633943	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAVF-09A-01D A41469 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41469	SRX588549	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAVF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATAVF-09A-01D A41469 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41469_1_lane_dupsFlagged.bam	SRR1374826	@dbgap@:reads/SRP012000/SRS633943/SRX588549/SRR1374826/SRR1374826.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAVF-09A-01D_TARGET-20-PATAVF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAVF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAVF-14A-01D	DNA	EFO	SRS635881	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAVF-14A-01D A42535 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42535	SRX593841	"Specific Capture analysis of normal sample TARGET-20-PATAVF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATAVF-14A-01D A42535 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42535_1_lane_dupsFlagged.bam	SRR1386382	@dbgap@:reads/SRP012000/SRS635881/SRX593841/SRR1386382/SRR1386382.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAVF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAVF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATAVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAVF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAVF-14A-01D	DNA	EFO	SRS635881	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAVF-14A-01D A42535 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42535	SRX593841	"Specific Capture analysis of normal sample TARGET-20-PATAVF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATAVF-14A-01D A42535 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42535_1_lane_dupsFlagged.bam	SRR1386382	@dbgap@:reads/SRP012000/SRS635881/SRX593841/SRR1386382/SRR1386382.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAVF-09A-01D_TARGET-20-PATAVF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATAVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAVF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAVF-14A-01D	DNA	EFO	SRS635881	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAVF-14A-01D A42535 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42535	SRX593841	"Specific Capture analysis of normal sample TARGET-20-PATAVF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATAVF-14A-01D A42535 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42535_1_lane_dupsFlagged.bam	SRR1386382	@dbgap@:reads/SRP012000/SRS635881/SRX593841/SRR1386382/SRR1386382.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATAVF-09A-01D_TARGET-20-PATAVF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATAWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATAWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAWB-09A-01D	DNA	EFO	SRS629155	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAWB-09A-01D A33295 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33295	SRX575211	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATAWB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATAWB-09A-01D A33295 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33295_1_lane_dupsFlagged.bam	SRR1346505	@dbgap@:reads/SRP012000/SRS629155/SRX575211/SRR1346505/SRR1346505.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATAWB-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATAWB-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATBFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATBFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBFL-09A-01D	DNA	EFO	SRS628912	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBFL-09A-01D A32307 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32307	SRX574968	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBFL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATBFL-09A-01D A32307 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32307_1_lane_dupsFlagged.bam	SRR1346142	@dbgap@:reads/SRP012000/SRS628912/SRX574968/SRR1346142/SRR1346142.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBFL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBFL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATBFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATBFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBFL-09A-01D	DNA	EFO	SRS628912	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBFL-09A-01D A32307 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32307	SRX574968	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBFL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATBFL-09A-01D A32307 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32307_1_lane_dupsFlagged.bam	SRR1346142	@dbgap@:reads/SRP012000/SRS628912/SRX574968/SRR1346142/SRR1346142.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBFL-09A-01D_TARGET-20-PATBFL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATBFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBFL-09A-01D	DNA	EFO	SRS628912	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBFL-09A-01D A32307 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32307	SRX574968	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBFL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATBFL-09A-01D A32307 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32307_1_lane_dupsFlagged.bam	SRR1346142	@dbgap@:reads/SRP012000/SRS628912/SRX574968/SRR1346142/SRR1346142.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBFL-09A-01D_TARGET-20-PATBFL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATBFL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBFL-14A-01D	DNA	EFO	SRS635653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBFL-14A-01D A41695 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41695	SRX593477	"Specific Capture analysis of normal sample TARGET-20-PATBFL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBFL-14A-01D A41695 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41695_1_lane_dupsFlagged.bam	SRR1385950	@dbgap@:reads/SRP012000/SRS635653/SRX593477/SRR1385950/SRR1385950.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBFL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBFL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATBFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATBFL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBFL-14A-01D	DNA	EFO	SRS635653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBFL-14A-01D A41695 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41695	SRX593477	"Specific Capture analysis of normal sample TARGET-20-PATBFL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBFL-14A-01D A41695 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41695_1_lane_dupsFlagged.bam	SRR1385950	@dbgap@:reads/SRP012000/SRS635653/SRX593477/SRR1385950/SRR1385950.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBFL-09A-01D_TARGET-20-PATBFL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATBFL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBFL-14A-01D	DNA	EFO	SRS635653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBFL-14A-01D A41695 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41695	SRX593477	"Specific Capture analysis of normal sample TARGET-20-PATBFL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBFL-14A-01D A41695 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41695_1_lane_dupsFlagged.bam	SRR1385950	@dbgap@:reads/SRP012000/SRS635653/SRX593477/SRR1385950/SRR1385950.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBFL-09A-01D_TARGET-20-PATBFL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBHG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBHG-03A-01D	DNA	EFO	SRS629173	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBHG-03A-01D A33344 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33344	SRX575229	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBHG-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATBHG-03A-01D A33344 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33344_1_lane_dupsFlagged.bam	SRR1346418	@dbgap@:reads/SRP012000/SRS629173/SRX575229/SRR1346418/SRR1346418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBHG-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBHG-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATBHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBHG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBHG-03A-01D	DNA	EFO	SRS629173	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBHG-03A-01D A33344 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33344	SRX575229	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBHG-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATBHG-03A-01D A33344 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33344_1_lane_dupsFlagged.bam	SRR1346418	@dbgap@:reads/SRP012000/SRS629173/SRX575229/SRR1346418/SRR1346418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBHG-03A-01D_TARGET-20-PATBHG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBHG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBHG-03A-01D	DNA	EFO	SRS629173	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBHG-03A-01D A33344 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33344	SRX575229	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBHG-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATBHG-03A-01D A33344 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33344_1_lane_dupsFlagged.bam	SRR1346418	@dbgap@:reads/SRP012000/SRS629173/SRX575229/SRR1346418/SRR1346418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBHG-03A-01D_TARGET-20-PATBHG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBHG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBHG-14A-01D	DNA	EFO	SRS635679	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBHG-14A-01D A41688 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41688	SRX593503	"Specific Capture analysis of normal sample TARGET-20-PATBHG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBHG-14A-01D A41688 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41688_1_lane_dupsFlagged.bam	SRR1385977	@dbgap@:reads/SRP012000/SRS635679/SRX593503/SRR1385977/SRR1385977.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBHG-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBHG-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATBHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBHG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBHG-14A-01D	DNA	EFO	SRS635679	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBHG-14A-01D A41688 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41688	SRX593503	"Specific Capture analysis of normal sample TARGET-20-PATBHG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBHG-14A-01D A41688 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41688_1_lane_dupsFlagged.bam	SRR1385977	@dbgap@:reads/SRP012000/SRS635679/SRX593503/SRR1385977/SRR1385977.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBHG-03A-01D_TARGET-20-PATBHG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBHG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBHG-14A-01D	DNA	EFO	SRS635679	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBHG-14A-01D A41688 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41688	SRX593503	"Specific Capture analysis of normal sample TARGET-20-PATBHG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBHG-14A-01D A41688 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41688_1_lane_dupsFlagged.bam	SRR1385977	@dbgap@:reads/SRP012000/SRS635679/SRX593503/SRR1385977/SRR1385977.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBHG-03A-01D_TARGET-20-PATBHG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBIP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBIP-09A-01D	DNA	EFO	SRS629146	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBIP-09A-01D A33296 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33296	SRX575203	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBIP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATBIP-09A-01D A33296 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33296_1_lane_dupsFlagged.bam	SRR1346415	@dbgap@:reads/SRP012000/SRS629146/SRX575203/SRR1346415/SRR1346415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBIP-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBIP-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATBIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBIP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBIP-09A-01D	DNA	EFO	SRS629146	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBIP-09A-01D A33296 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33296	SRX575203	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBIP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATBIP-09A-01D A33296 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33296_1_lane_dupsFlagged.bam	SRR1346415	@dbgap@:reads/SRP012000/SRS629146/SRX575203/SRR1346415/SRR1346415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBIP-09A-01D_TARGET-20-PATBIP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBIP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBIP-09A-01D	DNA	EFO	SRS629146	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBIP-09A-01D A33296 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33296	SRX575203	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBIP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATBIP-09A-01D A33296 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33296_1_lane_dupsFlagged.bam	SRR1346415	@dbgap@:reads/SRP012000/SRS629146/SRX575203/SRR1346415/SRR1346415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBIP-09A-01D_TARGET-20-PATBIP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBIP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBIP-14A-01D	DNA	EFO	SRS635651	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBIP-14A-01D A41689 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41689	SRX593475	"Specific Capture analysis of normal sample TARGET-20-PATBIP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBIP-14A-01D A41689 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41689_1_lane_dupsFlagged.bam	SRR1386008	@dbgap@:reads/SRP012000/SRS635651/SRX593475/SRR1386008/SRR1386008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBIP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBIP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATBIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBIP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBIP-14A-01D	DNA	EFO	SRS635651	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBIP-14A-01D A41689 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41689	SRX593475	"Specific Capture analysis of normal sample TARGET-20-PATBIP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBIP-14A-01D A41689 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41689_1_lane_dupsFlagged.bam	SRR1386008	@dbgap@:reads/SRP012000/SRS635651/SRX593475/SRR1386008/SRR1386008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBIP-09A-01D_TARGET-20-PATBIP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBIP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBIP-14A-01D	DNA	EFO	SRS635651	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBIP-14A-01D A41689 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41689	SRX593475	"Specific Capture analysis of normal sample TARGET-20-PATBIP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBIP-14A-01D A41689 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41689_1_lane_dupsFlagged.bam	SRR1386008	@dbgap@:reads/SRP012000/SRS635651/SRX593475/SRR1386008/SRR1386008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBIP-09A-01D_TARGET-20-PATBIP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBIR-09A-01D	DNA	EFO	SRS628304	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBIR-09A-01D A31197 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31197	SRX573369	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBIR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATBIR-09A-01D A31197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31197_1_lane_dupsFlagged.bam	SRR1342638	@dbgap@:reads/SRP012000/SRS628304/SRX573369/SRR1342638/SRR1342638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBIR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBIR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATBIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBIR-09A-01D	DNA	EFO	SRS628304	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBIR-09A-01D A31197 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31197	SRX573369	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBIR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATBIR-09A-01D A31197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31197_1_lane_dupsFlagged.bam	SRR1342638	@dbgap@:reads/SRP012000/SRS628304/SRX573369/SRR1342638/SRR1342638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBIR-09A-01D_TARGET-20-PATBIR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBIR-09A-01D	DNA	EFO	SRS628304	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBIR-09A-01D A31197 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31197	SRX573369	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBIR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATBIR-09A-01D A31197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31197_1_lane_dupsFlagged.bam	SRR1342638	@dbgap@:reads/SRP012000/SRS628304/SRX573369/SRR1342638/SRR1342638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBIR-09A-01D_TARGET-20-PATBIR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBIR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBIR-10A-01D	DNA	EFO	SRS635728	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBIR-10A-01D A42304 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42304	SRX593559	"Specific Capture analysis of normal sample TARGET-20-PATBIR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATBIR-10A-01D A42304 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42304_1_lane_dupsFlagged.bam	SRR1386030	@dbgap@:reads/SRP012000/SRS635728/SRX593559/SRR1386030/SRR1386030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBIR-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBIR-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATBIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBIR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBIR-10A-01D	DNA	EFO	SRS635728	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBIR-10A-01D A42304 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42304	SRX593559	"Specific Capture analysis of normal sample TARGET-20-PATBIR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATBIR-10A-01D A42304 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42304_1_lane_dupsFlagged.bam	SRR1386030	@dbgap@:reads/SRP012000/SRS635728/SRX593559/SRR1386030/SRR1386030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBIR-09A-01D_TARGET-20-PATBIR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBIR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBIR-10A-01D	DNA	EFO	SRS635728	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBIR-10A-01D A42304 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42304	SRX593559	"Specific Capture analysis of normal sample TARGET-20-PATBIR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATBIR-10A-01D A42304 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42304_1_lane_dupsFlagged.bam	SRR1386030	@dbgap@:reads/SRP012000/SRS635728/SRX593559/SRR1386030/SRR1386030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBIR-09A-01D_TARGET-20-PATBIR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBIZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBIZ-03A-01D	DNA	EFO	SRS633892	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBIZ-03A-01D A41519 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41519	SRX588496	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBIZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBIZ-03A-01D A41519 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41519_1_lane_dupsFlagged.bam	SRR1374839	@dbgap@:reads/SRP012000/SRS633892/SRX588496/SRR1374839/SRR1374839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBIZ-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBIZ-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATBIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBIZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBIZ-03A-01D	DNA	EFO	SRS633892	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBIZ-03A-01D A41519 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41519	SRX588496	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBIZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBIZ-03A-01D A41519 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41519_1_lane_dupsFlagged.bam	SRR1374839	@dbgap@:reads/SRP012000/SRS633892/SRX588496/SRR1374839/SRR1374839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBIZ-03A-01D_TARGET-20-PATBIZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBIZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBIZ-03A-01D	DNA	EFO	SRS633892	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBIZ-03A-01D A41519 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41519	SRX588496	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBIZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBIZ-03A-01D A41519 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41519_1_lane_dupsFlagged.bam	SRR1374839	@dbgap@:reads/SRP012000/SRS633892/SRX588496/SRR1374839/SRR1374839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBIZ-03A-01D_TARGET-20-PATBIZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBIZ-14A-01D	DNA	EFO	SRS635958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBIZ-14A-01D A42582 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42582	SRX593921	"Specific Capture analysis of normal sample TARGET-20-PATBIZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATBIZ-14A-01D A42582 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42582_1_lane_dupsFlagged.bam	SRR1386472	@dbgap@:reads/SRP012000/SRS635958/SRX593921/SRR1386472/SRR1386472.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBIZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBIZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATBIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBIZ-14A-01D	DNA	EFO	SRS635958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBIZ-14A-01D A42582 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42582	SRX593921	"Specific Capture analysis of normal sample TARGET-20-PATBIZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATBIZ-14A-01D A42582 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42582_1_lane_dupsFlagged.bam	SRR1386472	@dbgap@:reads/SRP012000/SRS635958/SRX593921/SRR1386472/SRR1386472.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBIZ-03A-01D_TARGET-20-PATBIZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBIZ-14A-01D	DNA	EFO	SRS635958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBIZ-14A-01D A42582 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42582	SRX593921	"Specific Capture analysis of normal sample TARGET-20-PATBIZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATBIZ-14A-01D A42582 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42582_1_lane_dupsFlagged.bam	SRR1386472	@dbgap@:reads/SRP012000/SRS635958/SRX593921/SRR1386472/SRR1386472.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBIZ-03A-01D_TARGET-20-PATBIZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBJK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBJK-09A-01D	DNA	EFO	SRS635483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBJK-09A-01D A41704 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41704	SRX593204	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBJK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBJK-09A-01D A41704 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41704_1_lane_dupsFlagged.bam	SRR1385602	@dbgap@:reads/SRP012000/SRS635483/SRX593204/SRR1385602/SRR1385602.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBJK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBJK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATBJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBJK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBJK-09A-01D	DNA	EFO	SRS635483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBJK-09A-01D A41704 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41704	SRX593204	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBJK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBJK-09A-01D A41704 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41704_1_lane_dupsFlagged.bam	SRR1385602	@dbgap@:reads/SRP012000/SRS635483/SRX593204/SRR1385602/SRR1385602.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBJK-09A-01D_TARGET-20-PATBJK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBJK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBJK-09A-01D	DNA	EFO	SRS635483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBJK-09A-01D A41704 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41704	SRX593204	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBJK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBJK-09A-01D A41704 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41704_1_lane_dupsFlagged.bam	SRR1385602	@dbgap@:reads/SRP012000/SRS635483/SRX593204/SRR1385602/SRR1385602.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBJK-09A-01D_TARGET-20-PATBJK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBJK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBJK-14A-01D	DNA	EFO	SRS635645	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBJK-14A-01D A41690 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41690	SRX593468	"Specific Capture analysis of normal sample TARGET-20-PATBJK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBJK-14A-01D A41690 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41690_1_lane_dupsFlagged.bam	SRR1385990	@dbgap@:reads/SRP012000/SRS635645/SRX593468/SRR1385990/SRR1385990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBJK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBJK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATBJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBJK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBJK-14A-01D	DNA	EFO	SRS635645	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBJK-14A-01D A41690 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41690	SRX593468	"Specific Capture analysis of normal sample TARGET-20-PATBJK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBJK-14A-01D A41690 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41690_1_lane_dupsFlagged.bam	SRR1385990	@dbgap@:reads/SRP012000/SRS635645/SRX593468/SRR1385990/SRR1385990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBJK-09A-01D_TARGET-20-PATBJK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBJK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBJK-14A-01D	DNA	EFO	SRS635645	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBJK-14A-01D A41690 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41690	SRX593468	"Specific Capture analysis of normal sample TARGET-20-PATBJK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBJK-14A-01D A41690 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41690_1_lane_dupsFlagged.bam	SRR1385990	@dbgap@:reads/SRP012000/SRS635645/SRX593468/SRR1385990/SRR1385990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBJK-09A-01D_TARGET-20-PATBJK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBNP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBNP-09A-01D	DNA	EFO	SRS633975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBNP-09A-01D A41470 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41470	SRX588582	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBNP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBNP-09A-01D A41470 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41470_1_lane_dupsFlagged.bam	SRR1374900	@dbgap@:reads/SRP012000/SRS633975/SRX588582/SRR1374900/SRR1374900.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBNP-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBNP-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATBNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBNP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBNP-09A-01D	DNA	EFO	SRS633975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBNP-09A-01D A41470 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41470	SRX588582	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBNP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBNP-09A-01D A41470 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41470_1_lane_dupsFlagged.bam	SRR1374900	@dbgap@:reads/SRP012000/SRS633975/SRX588582/SRR1374900/SRR1374900.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBNP-09A-01D_TARGET-20-PATBNP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBNP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBNP-09A-01D	DNA	EFO	SRS633975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBNP-09A-01D A41470 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41470	SRX588582	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBNP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBNP-09A-01D A41470 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41470_1_lane_dupsFlagged.bam	SRR1374900	@dbgap@:reads/SRP012000/SRS633975/SRX588582/SRR1374900/SRR1374900.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBNP-09A-01D_TARGET-20-PATBNP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBNP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBNP-14A-01D	DNA	EFO	SRS635928	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBNP-14A-01D A42509 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42509	SRX593889	"Specific Capture analysis of normal sample TARGET-20-PATBNP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATBNP-14A-01D A42509 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42509_1_lane_dupsFlagged.bam	SRR1386405	@dbgap@:reads/SRP012000/SRS635928/SRX593889/SRR1386405/SRR1386405.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBNP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBNP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATBNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBNP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBNP-14A-01D	DNA	EFO	SRS635928	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBNP-14A-01D A42509 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42509	SRX593889	"Specific Capture analysis of normal sample TARGET-20-PATBNP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATBNP-14A-01D A42509 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42509_1_lane_dupsFlagged.bam	SRR1386405	@dbgap@:reads/SRP012000/SRS635928/SRX593889/SRR1386405/SRR1386405.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBNP-09A-01D_TARGET-20-PATBNP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBNP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBNP-14A-01D	DNA	EFO	SRS635928	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBNP-14A-01D A42509 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42509	SRX593889	"Specific Capture analysis of normal sample TARGET-20-PATBNP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATBNP-14A-01D A42509 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42509_1_lane_dupsFlagged.bam	SRR1386405	@dbgap@:reads/SRP012000/SRS635928/SRX593889/SRR1386405/SRR1386405.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBNP-09A-01D_TARGET-20-PATBNP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBPW-09A-01D	DNA	EFO	SRS633958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBPW-09A-01D A41471 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41471	SRX588563	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBPW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBPW-09A-01D A41471 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41471_1_lane_dupsFlagged.bam	SRR1374914	@dbgap@:reads/SRP012000/SRS633958/SRX588563/SRR1374914/SRR1374914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBPW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBPW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBPW-09A-01D	DNA	EFO	SRS633958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBPW-09A-01D A41471 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41471	SRX588563	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBPW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBPW-09A-01D A41471 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41471_1_lane_dupsFlagged.bam	SRR1374914	@dbgap@:reads/SRP012000/SRS633958/SRX588563/SRR1374914/SRR1374914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBPW-09A-01D_TARGET-20-PATBPW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBPW-09A-01D	DNA	EFO	SRS633958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBPW-09A-01D A41471 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41471	SRX588563	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBPW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBPW-09A-01D A41471 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41471_1_lane_dupsFlagged.bam	SRR1374914	@dbgap@:reads/SRP012000/SRS633958/SRX588563/SRR1374914/SRR1374914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBPW-09A-01D_TARGET-20-PATBPW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBPW-14A-01D	DNA	EFO	SRS637509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBPW-14A-01D A42768 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42768	SRX597944	"Specific Capture analysis of normal sample TARGET-20-PATBPW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATBPW-14A-01D A42768 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42768_1_lane_dupsFlagged.bam	SRR1395242	@dbgap@:reads/SRP012000/SRS637509/SRX597944/SRR1395242/SRR1395242.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBPW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBPW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBPW-14A-01D	DNA	EFO	SRS637509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBPW-14A-01D A42768 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42768	SRX597944	"Specific Capture analysis of normal sample TARGET-20-PATBPW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATBPW-14A-01D A42768 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42768_1_lane_dupsFlagged.bam	SRR1395242	@dbgap@:reads/SRP012000/SRS637509/SRX597944/SRR1395242/SRR1395242.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBPW-09A-01D_TARGET-20-PATBPW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBPW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBPW-14A-01D	DNA	EFO	SRS637509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBPW-14A-01D A42768 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42768	SRX597944	"Specific Capture analysis of normal sample TARGET-20-PATBPW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATBPW-14A-01D A42768 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42768_1_lane_dupsFlagged.bam	SRR1395242	@dbgap@:reads/SRP012000/SRS637509/SRX597944/SRR1395242/SRR1395242.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBPW-09A-01D_TARGET-20-PATBPW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBRA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBRA-03A-01D	DNA	EFO	SRS629124	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBRA-03A-01D A33297 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33297	SRX575180	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBRA-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATBRA-03A-01D A33297 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33297_1_lane_dupsFlagged.bam	SRR1346467	@dbgap@:reads/SRP012000/SRS629124/SRX575180/SRR1346467/SRR1346467.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBRA-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBRA-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBRA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBRA-03A-01D	DNA	EFO	SRS629124	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBRA-03A-01D A33297 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33297	SRX575180	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBRA-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATBRA-03A-01D A33297 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33297_1_lane_dupsFlagged.bam	SRR1346467	@dbgap@:reads/SRP012000/SRS629124/SRX575180/SRR1346467/SRR1346467.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBRA-03A-01D_TARGET-20-PATBRA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBRA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBRA-03A-01D	DNA	EFO	SRS629124	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBRA-03A-01D A33297 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33297	SRX575180	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBRA-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATBRA-03A-01D A33297 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33297_1_lane_dupsFlagged.bam	SRR1346467	@dbgap@:reads/SRP012000/SRS629124/SRX575180/SRR1346467/SRR1346467.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBRA-03A-01D_TARGET-20-PATBRA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBRA-14A-01D	DNA	EFO	SRS635706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBRA-14A-01D A41673 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41673	SRX593529	"Specific Capture analysis of normal sample TARGET-20-PATBRA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBRA-14A-01D A41673 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41673_1_lane_dupsFlagged.bam	SRR1385972	@dbgap@:reads/SRP012000/SRS635706/SRX593529/SRR1385972/SRR1385972.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBRA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBRA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBRA-14A-01D	DNA	EFO	SRS635706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBRA-14A-01D A41673 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41673	SRX593529	"Specific Capture analysis of normal sample TARGET-20-PATBRA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBRA-14A-01D A41673 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41673_1_lane_dupsFlagged.bam	SRR1385972	@dbgap@:reads/SRP012000/SRS635706/SRX593529/SRR1385972/SRR1385972.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBRA-03A-01D_TARGET-20-PATBRA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBRA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBRA-14A-01D	DNA	EFO	SRS635706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBRA-14A-01D A41673 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41673	SRX593529	"Specific Capture analysis of normal sample TARGET-20-PATBRA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBRA-14A-01D A41673 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41673_1_lane_dupsFlagged.bam	SRR1385972	@dbgap@:reads/SRP012000/SRS635706/SRX593529/SRR1385972/SRR1385972.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBRA-03A-01D_TARGET-20-PATBRA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBUR-09A-01D	DNA	EFO	SRS633933	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBUR-09A-01D A41472 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41472	SRX588538	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBUR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBUR-09A-01D A41472 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41472_1_lane_dupsFlagged.bam	SRR1374835	@dbgap@:reads/SRP012000/SRS633933/SRX588538/SRR1374835/SRR1374835.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBUR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBUR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATBUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBUR-09A-01D	DNA	EFO	SRS633933	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBUR-09A-01D A41472 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41472	SRX588538	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBUR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBUR-09A-01D A41472 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41472_1_lane_dupsFlagged.bam	SRR1374835	@dbgap@:reads/SRP012000/SRS633933/SRX588538/SRR1374835/SRR1374835.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBUR-09A-01D_TARGET-20-PATBUR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBUR-09A-01D	DNA	EFO	SRS633933	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBUR-09A-01D A41472 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41472	SRX588538	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBUR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBUR-09A-01D A41472 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41472_1_lane_dupsFlagged.bam	SRR1374835	@dbgap@:reads/SRP012000/SRS633933/SRX588538/SRR1374835/SRR1374835.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBUR-09A-01D_TARGET-20-PATBUR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBUR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBUR-14A-01D	DNA	EFO	SRS637569	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBUR-14A-01D A42769 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42769	SRX598009	"Specific Capture analysis of normal sample TARGET-20-PATBUR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATBUR-14A-01D A42769 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42769_1_lane_dupsFlagged.bam	SRR1395257	@dbgap@:reads/SRP012000/SRS637569/SRX598009/SRR1395257/SRR1395257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBUR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBUR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATBUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBUR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBUR-14A-01D	DNA	EFO	SRS637569	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBUR-14A-01D A42769 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42769	SRX598009	"Specific Capture analysis of normal sample TARGET-20-PATBUR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATBUR-14A-01D A42769 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42769_1_lane_dupsFlagged.bam	SRR1395257	@dbgap@:reads/SRP012000/SRS637569/SRX598009/SRR1395257/SRR1395257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBUR-09A-01D_TARGET-20-PATBUR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBUR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBUR-14A-01D	DNA	EFO	SRS637569	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBUR-14A-01D A42769 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42769	SRX598009	"Specific Capture analysis of normal sample TARGET-20-PATBUR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATBUR-14A-01D A42769 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42769_1_lane_dupsFlagged.bam	SRR1395257	@dbgap@:reads/SRP012000/SRS637569/SRX598009/SRR1395257/SRR1395257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBUR-09A-01D_TARGET-20-PATBUR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBVJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBVJ-03A-01D	DNA	EFO	SRS633903	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBVJ-03A-01D A41475 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41475	SRX588507	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBVJ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBVJ-03A-01D A41475 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41475_1_lane_dupsFlagged.bam	SRR1374888	@dbgap@:reads/SRP012000/SRS633903/SRX588507/SRR1374888/SRR1374888.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBVJ-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBVJ-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATBVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBVX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBVX-09A-01D	DNA	EFO	SRS629166	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBVX-09A-01D A33298 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33298	SRX575220	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBVX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATBVX-09A-01D A33298 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33298_1_lane_dupsFlagged.bam	SRR1346420	@dbgap@:reads/SRP012000/SRS629166/SRX575220/SRR1346420/SRR1346420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBVX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBVX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATBVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBVX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBVX-09A-01D	DNA	EFO	SRS629166	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBVX-09A-01D A33298 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33298	SRX575220	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBVX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATBVX-09A-01D A33298 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33298_1_lane_dupsFlagged.bam	SRR1346420	@dbgap@:reads/SRP012000/SRS629166/SRX575220/SRR1346420/SRR1346420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBVX-09A-01D_TARGET-20-PATBVX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBVX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBVX-09A-01D	DNA	EFO	SRS629166	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBVX-09A-01D A33298 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33298	SRX575220	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBVX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATBVX-09A-01D A33298 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33298_1_lane_dupsFlagged.bam	SRR1346420	@dbgap@:reads/SRP012000/SRS629166/SRX575220/SRR1346420/SRR1346420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBVX-09A-01D_TARGET-20-PATBVX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBVX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBVX-14A-01D	DNA	EFO	SRS635978	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBVX-14A-01D A42585 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42585	SRX593940	"Specific Capture analysis of normal sample TARGET-20-PATBVX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATBVX-14A-01D A42585 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42585_1_lane_dupsFlagged.bam	SRR1386449	@dbgap@:reads/SRP012000/SRS635978/SRX593940/SRR1386449/SRR1386449.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBVX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBVX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATBVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBVX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBVX-14A-01D	DNA	EFO	SRS635978	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBVX-14A-01D A42585 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42585	SRX593940	"Specific Capture analysis of normal sample TARGET-20-PATBVX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATBVX-14A-01D A42585 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42585_1_lane_dupsFlagged.bam	SRR1386449	@dbgap@:reads/SRP012000/SRS635978/SRX593940/SRR1386449/SRR1386449.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBVX-09A-01D_TARGET-20-PATBVX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBVX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBVX-14A-01D	DNA	EFO	SRS635978	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBVX-14A-01D A42585 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42585	SRX593940	"Specific Capture analysis of normal sample TARGET-20-PATBVX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATBVX-14A-01D A42585 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42585_1_lane_dupsFlagged.bam	SRR1386449	@dbgap@:reads/SRP012000/SRS635978/SRX593940/SRR1386449/SRR1386449.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBVX-09A-01D_TARGET-20-PATBVX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBWH-09A-01D	DNA	EFO	SRS635589	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBWH-09A-01D A41913 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41913	SRX593408	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBWH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATBWH-09A-01D A41913 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41913_1_lane_dupsFlagged.bam	SRR1385919	@dbgap@:reads/SRP012000/SRS635589/SRX593408/SRR1385919/SRR1385919.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBWH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBWH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATBXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBXU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBXU-09A-01D	DNA	EFO	SRS633918	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBXU-09A-01D A41473 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41473	SRX588523	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBXU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATBXU-09A-01D A41473 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41473_1_lane_dupsFlagged.bam	SRR1374875	@dbgap@:reads/SRP012000/SRS633918/SRX588523/SRR1374875/SRR1374875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBXU-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBXU-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATBYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBYV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBYV-09A-01D	DNA	EFO	SRS629131	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBYV-09A-01D A33299 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33299	SRX575186	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBYV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATBYV-09A-01D A33299 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33299_1_lane_dupsFlagged.bam	SRR1346477	@dbgap@:reads/SRP012000/SRS629131/SRX575186/SRR1346477/SRR1346477.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBYV-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBYV-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATBYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBYV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBYV-09A-01D	DNA	EFO	SRS629131	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBYV-09A-01D A33299 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33299	SRX575186	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBYV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATBYV-09A-01D A33299 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33299_1_lane_dupsFlagged.bam	SRR1346477	@dbgap@:reads/SRP012000/SRS629131/SRX575186/SRR1346477/SRR1346477.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBYV-09A-01D_TARGET-20-PATBYV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBYV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBYV-09A-01D	DNA	EFO	SRS629131	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBYV-09A-01D A33299 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33299	SRX575186	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATBYV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATBYV-09A-01D A33299 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33299_1_lane_dupsFlagged.bam	SRR1346477	@dbgap@:reads/SRP012000/SRS629131/SRX575186/SRR1346477/SRR1346477.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBYV-09A-01D_TARGET-20-PATBYV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATBYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBYV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBYV-14A-01D	DNA	EFO	SRS637374	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBYV-14A-01D A42849 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42849	SRX597779	"Specific Capture analysis of normal sample TARGET-20-PATBYV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATBYV-14A-01D A42849 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42849_1_lane_dupsFlagged.bam	SRR1395094	@dbgap@:reads/SRP012000/SRS637374/SRX597779/SRR1395094/SRR1395094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATBYV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATBYV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATBYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBYV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBYV-14A-01D	DNA	EFO	SRS637374	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBYV-14A-01D A42849 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42849	SRX597779	"Specific Capture analysis of normal sample TARGET-20-PATBYV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATBYV-14A-01D A42849 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42849_1_lane_dupsFlagged.bam	SRR1395094	@dbgap@:reads/SRP012000/SRS637374/SRX597779/SRR1395094/SRR1395094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBYV-09A-01D_TARGET-20-PATBYV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATBYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATBYV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBYV-14A-01D	DNA	EFO	SRS637374	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBYV-14A-01D A42849 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42849	SRX597779	"Specific Capture analysis of normal sample TARGET-20-PATBYV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATBYV-14A-01D A42849 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42849_1_lane_dupsFlagged.bam	SRR1395094	@dbgap@:reads/SRP012000/SRS637374/SRX597779/SRR1395094/SRR1395094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATBYV-09A-01D_TARGET-20-PATBYV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCBV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCBV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCBV-09A-01D	DNA	EFO	SRS633964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCBV-09A-01D A41474 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41474	SRX588571	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCBV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCBV-09A-01D A41474 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41474_1_lane_dupsFlagged.bam	SRR1374898	@dbgap@:reads/SRP012000/SRS633964/SRX588571/SRR1374898/SRR1374898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCBV-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCBV-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATCBV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCBV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCBV-09A-01D	DNA	EFO	SRS633964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCBV-09A-01D A41474 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41474	SRX588571	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCBV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCBV-09A-01D A41474 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41474_1_lane_dupsFlagged.bam	SRR1374898	@dbgap@:reads/SRP012000/SRS633964/SRX588571/SRR1374898/SRR1374898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCBV-09A-01D_TARGET-20-PATCBV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCBV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCBV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCBV-09A-01D	DNA	EFO	SRS633964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCBV-09A-01D A41474 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41474	SRX588571	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCBV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCBV-09A-01D A41474 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41474_1_lane_dupsFlagged.bam	SRR1374898	@dbgap@:reads/SRP012000/SRS633964/SRX588571/SRR1374898/SRR1374898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCBV-09A-01D_TARGET-20-PATCBV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCBV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCBV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCBV-14A-01D	DNA	EFO	SRS635674	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCBV-14A-01D A41691 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41691	SRX593498	"Specific Capture analysis of normal sample TARGET-20-PATCBV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCBV-14A-01D A41691 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41691_1_lane_dupsFlagged.bam	SRR1385988	@dbgap@:reads/SRP012000/SRS635674/SRX593498/SRR1385988/SRR1385988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCBV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCBV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATCBV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCBV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCBV-14A-01D	DNA	EFO	SRS635674	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCBV-14A-01D A41691 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41691	SRX593498	"Specific Capture analysis of normal sample TARGET-20-PATCBV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCBV-14A-01D A41691 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41691_1_lane_dupsFlagged.bam	SRR1385988	@dbgap@:reads/SRP012000/SRS635674/SRX593498/SRR1385988/SRR1385988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCBV-09A-01D_TARGET-20-PATCBV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCBV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCBV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCBV-14A-01D	DNA	EFO	SRS635674	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCBV-14A-01D A41691 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41691	SRX593498	"Specific Capture analysis of normal sample TARGET-20-PATCBV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCBV-14A-01D A41691 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41691_1_lane_dupsFlagged.bam	SRR1385988	@dbgap@:reads/SRP012000/SRS635674/SRX593498/SRR1385988/SRR1385988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCBV-09A-01D_TARGET-20-PATCBV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCLR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCLR-09A-01D	DNA	EFO	SRS635510	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCLR-09A-01D A41705 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41705	SRX593232	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCLR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCLR-09A-01D A41705 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41705_1_lane_dupsFlagged.bam	SRR1385616	@dbgap@:reads/SRP012000/SRS635510/SRX593232/SRR1385616/SRR1385616.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCLR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCLR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATCLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCLR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCLR-09A-01D	DNA	EFO	SRS635510	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCLR-09A-01D A41705 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41705	SRX593232	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCLR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCLR-09A-01D A41705 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41705_1_lane_dupsFlagged.bam	SRR1385616	@dbgap@:reads/SRP012000/SRS635510/SRX593232/SRR1385616/SRR1385616.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCLR-09A-01D_TARGET-20-PATCLR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCLR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCLR-09A-01D	DNA	EFO	SRS635510	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCLR-09A-01D A41705 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41705	SRX593232	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCLR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCLR-09A-01D A41705 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41705_1_lane_dupsFlagged.bam	SRR1385616	@dbgap@:reads/SRP012000/SRS635510/SRX593232/SRR1385616/SRR1385616.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCLR-09A-01D_TARGET-20-PATCLR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCLR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCLR-14A-01D	DNA	EFO	SRS637517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCLR-14A-01D A42771 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42771	SRX597953	"Specific Capture analysis of normal sample TARGET-20-PATCLR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATCLR-14A-01D A42771 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42771_1_lane_dupsFlagged.bam	SRR1395273	@dbgap@:reads/SRP012000/SRS637517/SRX597953/SRR1395273/SRR1395273.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCLR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCLR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATCLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCLR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCLR-14A-01D	DNA	EFO	SRS637517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCLR-14A-01D A42771 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42771	SRX597953	"Specific Capture analysis of normal sample TARGET-20-PATCLR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATCLR-14A-01D A42771 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42771_1_lane_dupsFlagged.bam	SRR1395273	@dbgap@:reads/SRP012000/SRS637517/SRX597953/SRR1395273/SRR1395273.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCLR-09A-01D_TARGET-20-PATCLR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCLR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCLR-14A-01D	DNA	EFO	SRS637517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCLR-14A-01D A42771 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42771	SRX597953	"Specific Capture analysis of normal sample TARGET-20-PATCLR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATCLR-14A-01D A42771 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42771_1_lane_dupsFlagged.bam	SRR1395273	@dbgap@:reads/SRP012000/SRS637517/SRX597953/SRR1395273/SRR1395273.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCLR-09A-01D_TARGET-20-PATCLR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCPY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCPY-04A-01D	DNA	EFO	SRS637313	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCPY-04A-01D A42190 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42190	SRX597679	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCPY-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATCPY-04A-01D A42190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42190_1_lane_dupsFlagged.bam	SRR1394998	@dbgap@:reads/SRP012000/SRS637313/SRX597679/SRR1394998/SRR1394998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCPY-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCPY-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATCPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCPY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCPY-04A-01D	DNA	EFO	SRS637313	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCPY-04A-01D A42190 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42190	SRX597679	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCPY-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATCPY-04A-01D A42190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42190_1_lane_dupsFlagged.bam	SRR1394998	@dbgap@:reads/SRP012000/SRS637313/SRX597679/SRR1394998/SRR1394998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCPY-04A-01D_TARGET-20-PATCPY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCPY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCPY-04A-01D	DNA	EFO	SRS637313	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCPY-04A-01D A42190 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42190	SRX597679	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCPY-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATCPY-04A-01D A42190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42190_1_lane_dupsFlagged.bam	SRR1394998	@dbgap@:reads/SRP012000/SRS637313/SRX597679/SRR1394998/SRR1394998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCPY-04A-01D_TARGET-20-PATCPY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCPY-09A-01D	DNA	EFO	SRS629112	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCPY-09A-01D A33300 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33300	SRX575168	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCPY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATCPY-09A-01D A33300 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33300_1_lane_dupsFlagged.bam	SRR1346445	@dbgap@:reads/SRP012000/SRS629112/SRX575168/SRR1346445/SRR1346445.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCPY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCPY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATCPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCPY-09A-01D	DNA	EFO	SRS629112	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCPY-09A-01D A33300 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33300	SRX575168	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCPY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATCPY-09A-01D A33300 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33300_1_lane_dupsFlagged.bam	SRR1346445	@dbgap@:reads/SRP012000/SRS629112/SRX575168/SRR1346445/SRR1346445.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCPY-09A-01D_TARGET-20-PATCPY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCPY-09A-01D	DNA	EFO	SRS629112	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCPY-09A-01D A33300 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33300	SRX575168	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCPY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATCPY-09A-01D A33300 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33300_1_lane_dupsFlagged.bam	SRR1346445	@dbgap@:reads/SRP012000/SRS629112/SRX575168/SRR1346445/SRR1346445.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCPY-09A-01D_TARGET-20-PATCPY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCPY-14A-01D	DNA	EFO	SRS637464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCPY-14A-01D A42920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42920	SRX597883	"Specific Capture analysis of normal sample TARGET-20-PATCPY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATCPY-14A-01D A42920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42920_1_lane_dupsFlagged.bam	SRR1395146	@dbgap@:reads/SRP012000/SRS637464/SRX597883/SRR1395146/SRR1395146.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCPY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCPY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATCPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCPY-14A-01D	DNA	EFO	SRS637464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCPY-14A-01D A42920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42920	SRX597883	"Specific Capture analysis of normal sample TARGET-20-PATCPY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATCPY-14A-01D A42920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42920_1_lane_dupsFlagged.bam	SRR1395146	@dbgap@:reads/SRP012000/SRS637464/SRX597883/SRR1395146/SRR1395146.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCPY-04A-01D_TARGET-20-PATCPY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCPY-14A-01D	DNA	EFO	SRS637464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCPY-14A-01D A42920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42920	SRX597883	"Specific Capture analysis of normal sample TARGET-20-PATCPY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATCPY-14A-01D A42920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42920_1_lane_dupsFlagged.bam	SRR1395146	@dbgap@:reads/SRP012000/SRS637464/SRX597883/SRR1395146/SRR1395146.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCPY-04A-01D_TARGET-20-PATCPY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCPY-14A-01D	DNA	EFO	SRS637464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCPY-14A-01D A42920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42920	SRX597883	"Specific Capture analysis of normal sample TARGET-20-PATCPY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATCPY-14A-01D A42920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42920_1_lane_dupsFlagged.bam	SRR1395146	@dbgap@:reads/SRP012000/SRS637464/SRX597883/SRR1395146/SRR1395146.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCPY-09A-01D_TARGET-20-PATCPY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCPY-14A-01D	DNA	EFO	SRS637464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCPY-14A-01D A42920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42920	SRX597883	"Specific Capture analysis of normal sample TARGET-20-PATCPY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATCPY-14A-01D A42920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42920_1_lane_dupsFlagged.bam	SRR1395146	@dbgap@:reads/SRP012000/SRS637464/SRX597883/SRR1395146/SRR1395146.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCPY-09A-01D_TARGET-20-PATCPY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCTM-09A-01D	DNA	EFO	SRS633968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCTM-09A-01D A41476 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41476	SRX588573	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCTM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCTM-09A-01D A41476 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41476_1_lane_dupsFlagged.bam	SRR1374844	@dbgap@:reads/SRP012000/SRS633968/SRX588573/SRR1374844/SRR1374844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCTM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCTM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATCTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCTM-09A-01D	DNA	EFO	SRS633968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCTM-09A-01D A41476 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41476	SRX588573	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCTM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCTM-09A-01D A41476 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41476_1_lane_dupsFlagged.bam	SRR1374844	@dbgap@:reads/SRP012000/SRS633968/SRX588573/SRR1374844/SRR1374844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCTM-09A-01D_TARGET-20-PATCTM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCTM-09A-01D	DNA	EFO	SRS633968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCTM-09A-01D A41476 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41476	SRX588573	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCTM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCTM-09A-01D A41476 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41476_1_lane_dupsFlagged.bam	SRR1374844	@dbgap@:reads/SRP012000/SRS633968/SRX588573/SRR1374844/SRR1374844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCTM-09A-01D_TARGET-20-PATCTM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCTM-14A-01D	DNA	EFO	SRS637425	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCTM-14A-01D A42851 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42851	SRX597834	"Specific Capture analysis of normal sample TARGET-20-PATCTM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATCTM-14A-01D A42851 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42851_1_lane_dupsFlagged.bam	SRR1395113	@dbgap@:reads/SRP012000/SRS637425/SRX597834/SRR1395113/SRR1395113.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCTM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCTM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATCTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCTM-14A-01D	DNA	EFO	SRS637425	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCTM-14A-01D A42851 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42851	SRX597834	"Specific Capture analysis of normal sample TARGET-20-PATCTM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATCTM-14A-01D A42851 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42851_1_lane_dupsFlagged.bam	SRR1395113	@dbgap@:reads/SRP012000/SRS637425/SRX597834/SRR1395113/SRR1395113.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCTM-09A-01D_TARGET-20-PATCTM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCTM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCTM-14A-01D	DNA	EFO	SRS637425	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCTM-14A-01D A42851 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42851	SRX597834	"Specific Capture analysis of normal sample TARGET-20-PATCTM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATCTM-14A-01D A42851 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42851_1_lane_dupsFlagged.bam	SRR1395113	@dbgap@:reads/SRP012000/SRS637425/SRX597834/SRR1395113/SRR1395113.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCTM-09A-01D_TARGET-20-PATCTM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCVL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCVL-03A-01D	DNA	EFO	SRS633927	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCVL-03A-01D A41477 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41477	SRX588532	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCVL-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCVL-03A-01D A41477 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41477_1_lane_dupsFlagged.bam	SRR1374831	@dbgap@:reads/SRP012000/SRS633927/SRX588532/SRR1374831/SRR1374831.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCVL-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCVL-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATCVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCVL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCVL-03A-01D	DNA	EFO	SRS633927	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCVL-03A-01D A41477 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41477	SRX588532	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCVL-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCVL-03A-01D A41477 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41477_1_lane_dupsFlagged.bam	SRR1374831	@dbgap@:reads/SRP012000/SRS633927/SRX588532/SRR1374831/SRR1374831.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCVL-03A-01D_TARGET-20-PATCVL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCVL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCVL-03A-01D	DNA	EFO	SRS633927	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCVL-03A-01D A41477 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41477	SRX588532	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCVL-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCVL-03A-01D A41477 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41477_1_lane_dupsFlagged.bam	SRR1374831	@dbgap@:reads/SRP012000/SRS633927/SRX588532/SRR1374831/SRR1374831.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCVL-03A-01D_TARGET-20-PATCVL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCVL-14A-01D	DNA	EFO	SRS635665	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCVL-14A-01D A41686 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41686	SRX593489	"Specific Capture analysis of normal sample TARGET-20-PATCVL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCVL-14A-01D A41686 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41686_1_lane_dupsFlagged.bam	SRR1385986	@dbgap@:reads/SRP012000/SRS635665/SRX593489/SRR1385986/SRR1385986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCVL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCVL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATCVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCVL-14A-01D	DNA	EFO	SRS635665	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCVL-14A-01D A41686 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41686	SRX593489	"Specific Capture analysis of normal sample TARGET-20-PATCVL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCVL-14A-01D A41686 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41686_1_lane_dupsFlagged.bam	SRR1385986	@dbgap@:reads/SRP012000/SRS635665/SRX593489/SRR1385986/SRR1385986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCVL-03A-01D_TARGET-20-PATCVL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCVL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCVL-14A-01D	DNA	EFO	SRS635665	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCVL-14A-01D A41686 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41686	SRX593489	"Specific Capture analysis of normal sample TARGET-20-PATCVL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCVL-14A-01D A41686 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41686_1_lane_dupsFlagged.bam	SRR1385986	@dbgap@:reads/SRP012000/SRS635665/SRX593489/SRR1385986/SRR1385986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCVL-03A-01D_TARGET-20-PATCVL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCWP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCWP-03A-01D	DNA	EFO	SRS635495	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCWP-03A-01D A41706 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41706	SRX593218	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCWP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCWP-03A-01D A41706 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41706_1_lane_dupsFlagged.bam	SRR1385582	@dbgap@:reads/SRP012000/SRS635495/SRX593218/SRR1385582/SRR1385582.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCWP-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCWP-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATCWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCWP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCWP-03A-01D	DNA	EFO	SRS635495	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCWP-03A-01D A41706 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41706	SRX593218	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCWP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCWP-03A-01D A41706 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41706_1_lane_dupsFlagged.bam	SRR1385582	@dbgap@:reads/SRP012000/SRS635495/SRX593218/SRR1385582/SRR1385582.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCWP-03A-01D_TARGET-20-PATCWP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCWP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCWP-03A-01D	DNA	EFO	SRS635495	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCWP-03A-01D A41706 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41706	SRX593218	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCWP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCWP-03A-01D A41706 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41706_1_lane_dupsFlagged.bam	SRR1385582	@dbgap@:reads/SRP012000/SRS635495/SRX593218/SRR1385582/SRR1385582.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCWP-03A-01D_TARGET-20-PATCWP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCWP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCWP-14A-01D	DNA	EFO	SRS637420	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCWP-14A-01D A42846 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42846	SRX597829	"Specific Capture analysis of normal sample TARGET-20-PATCWP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATCWP-14A-01D A42846 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42846_1_lane_dupsFlagged.bam	SRR1395096	@dbgap@:reads/SRP012000/SRS637420/SRX597829/SRR1395096/SRR1395096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCWP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCWP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATCWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCWP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCWP-14A-01D	DNA	EFO	SRS637420	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCWP-14A-01D A42846 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42846	SRX597829	"Specific Capture analysis of normal sample TARGET-20-PATCWP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATCWP-14A-01D A42846 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42846_1_lane_dupsFlagged.bam	SRR1395096	@dbgap@:reads/SRP012000/SRS637420/SRX597829/SRR1395096/SRR1395096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCWP-03A-01D_TARGET-20-PATCWP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCWP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCWP-14A-01D	DNA	EFO	SRS637420	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCWP-14A-01D A42846 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42846	SRX597829	"Specific Capture analysis of normal sample TARGET-20-PATCWP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATCWP-14A-01D A42846 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42846_1_lane_dupsFlagged.bam	SRR1395096	@dbgap@:reads/SRP012000/SRS637420/SRX597829/SRR1395096/SRR1395096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCWP-03A-01D_TARGET-20-PATCWP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCXL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCXL-03A-01D	DNA	EFO	SRS629184	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCXL-03A-01D A33345 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33345	SRX575239	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCXL-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATCXL-03A-01D A33345 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33345_1_lane_dupsFlagged.bam	SRR1346452	@dbgap@:reads/SRP012000/SRS629184/SRX575239/SRR1346452/SRR1346452.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCXL-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCXL-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATCXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCXL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCXL-03A-01D	DNA	EFO	SRS629184	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCXL-03A-01D A33345 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33345	SRX575239	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCXL-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATCXL-03A-01D A33345 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33345_1_lane_dupsFlagged.bam	SRR1346452	@dbgap@:reads/SRP012000/SRS629184/SRX575239/SRR1346452/SRR1346452.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCXL-03A-01D_TARGET-20-PATCXL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCXL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCXL-03A-01D	DNA	EFO	SRS629184	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCXL-03A-01D A33345 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33345	SRX575239	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCXL-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATCXL-03A-01D A33345 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33345_1_lane_dupsFlagged.bam	SRR1346452	@dbgap@:reads/SRP012000/SRS629184/SRX575239/SRR1346452/SRR1346452.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCXL-03A-01D_TARGET-20-PATCXL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCXL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCXL-04A-01D	DNA	EFO	SRS637325	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCXL-04A-01D A42258 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42258	SRX597704	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCXL-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATCXL-04A-01D A42258 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42258_1_lane_dupsFlagged.bam	SRR1394997	@dbgap@:reads/SRP012000/SRS637325/SRX597704/SRR1394997/SRR1394997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCXL-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCXL-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATCXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCXL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCXL-04A-01D	DNA	EFO	SRS637325	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCXL-04A-01D A42258 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42258	SRX597704	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCXL-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATCXL-04A-01D A42258 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42258_1_lane_dupsFlagged.bam	SRR1394997	@dbgap@:reads/SRP012000/SRS637325/SRX597704/SRR1394997/SRR1394997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCXL-04A-01D_TARGET-20-PATCXL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCXL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCXL-04A-01D	DNA	EFO	SRS637325	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCXL-04A-01D A42258 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42258	SRX597704	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCXL-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATCXL-04A-01D A42258 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42258_1_lane_dupsFlagged.bam	SRR1394997	@dbgap@:reads/SRP012000/SRS637325/SRX597704/SRR1394997/SRR1394997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCXL-04A-01D_TARGET-20-PATCXL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCXL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCXL-14A-01D	DNA	EFO	SRS637496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCXL-14A-01D A42934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42934	SRX597928	"Specific Capture analysis of normal sample TARGET-20-PATCXL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATCXL-14A-01D A42934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42934_1_lane_dupsFlagged.bam	SRR1395170	@dbgap@:reads/SRP012000/SRS637496/SRX597928/SRR1395170/SRR1395170.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCXL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCXL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATCXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCXL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCXL-14A-01D	DNA	EFO	SRS637496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCXL-14A-01D A42934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42934	SRX597928	"Specific Capture analysis of normal sample TARGET-20-PATCXL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATCXL-14A-01D A42934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42934_1_lane_dupsFlagged.bam	SRR1395170	@dbgap@:reads/SRP012000/SRS637496/SRX597928/SRR1395170/SRR1395170.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCXL-03A-01D_TARGET-20-PATCXL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCXL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCXL-14A-01D	DNA	EFO	SRS637496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCXL-14A-01D A42934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42934	SRX597928	"Specific Capture analysis of normal sample TARGET-20-PATCXL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATCXL-14A-01D A42934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42934_1_lane_dupsFlagged.bam	SRR1395170	@dbgap@:reads/SRP012000/SRS637496/SRX597928/SRR1395170/SRR1395170.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCXL-03A-01D_TARGET-20-PATCXL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCXL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCXL-14A-01D	DNA	EFO	SRS637496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCXL-14A-01D A42934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42934	SRX597928	"Specific Capture analysis of normal sample TARGET-20-PATCXL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATCXL-14A-01D A42934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42934_1_lane_dupsFlagged.bam	SRR1395170	@dbgap@:reads/SRP012000/SRS637496/SRX597928/SRR1395170/SRR1395170.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCXL-04A-01D_TARGET-20-PATCXL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCXL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCXL-14A-01D	DNA	EFO	SRS637496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCXL-14A-01D A42934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42934	SRX597928	"Specific Capture analysis of normal sample TARGET-20-PATCXL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATCXL-14A-01D A42934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42934_1_lane_dupsFlagged.bam	SRR1395170	@dbgap@:reads/SRP012000/SRS637496/SRX597928/SRR1395170/SRR1395170.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCXL-04A-01D_TARGET-20-PATCXL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCYP-03A-01D	DNA	EFO	SRS633891	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCYP-03A-01D A41479 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41479	SRX588495	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCYP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCYP-03A-01D A41479 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41479_1_lane_dupsFlagged.bam	SRR1374824	@dbgap@:reads/SRP012000/SRS633891/SRX588495/SRR1374824/SRR1374824.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCYP-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCYP-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATCYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCYP-03A-01D	DNA	EFO	SRS633891	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCYP-03A-01D A41479 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41479	SRX588495	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCYP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCYP-03A-01D A41479 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41479_1_lane_dupsFlagged.bam	SRR1374824	@dbgap@:reads/SRP012000/SRS633891/SRX588495/SRR1374824/SRR1374824.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCYP-03A-01D_TARGET-20-PATCYP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCYP-03A-01D	DNA	EFO	SRS633891	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCYP-03A-01D A41479 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41479	SRX588495	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCYP-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCYP-03A-01D A41479 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41479_1_lane_dupsFlagged.bam	SRR1374824	@dbgap@:reads/SRP012000/SRS633891/SRX588495/SRR1374824/SRR1374824.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCYP-03A-01D_TARGET-20-PATCYP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCYP-14A-01D	DNA	EFO	SRS636016	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCYP-14A-01D A42583 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42583	SRX593990	"Specific Capture analysis of normal sample TARGET-20-PATCYP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATCYP-14A-01D A42583 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42583_1_lane_dupsFlagged.bam	SRR1386420	@dbgap@:reads/SRP012000/SRS636016/SRX593990/SRR1386420/SRR1386420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCYP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCYP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATCYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCYP-14A-01D	DNA	EFO	SRS636016	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCYP-14A-01D A42583 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42583	SRX593990	"Specific Capture analysis of normal sample TARGET-20-PATCYP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATCYP-14A-01D A42583 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42583_1_lane_dupsFlagged.bam	SRR1386420	@dbgap@:reads/SRP012000/SRS636016/SRX593990/SRR1386420/SRR1386420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCYP-03A-01D_TARGET-20-PATCYP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCYP-14A-01D	DNA	EFO	SRS636016	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCYP-14A-01D A42583 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42583	SRX593990	"Specific Capture analysis of normal sample TARGET-20-PATCYP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATCYP-14A-01D A42583 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42583_1_lane_dupsFlagged.bam	SRR1386420	@dbgap@:reads/SRP012000/SRS636016/SRX593990/SRR1386420/SRR1386420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCYP-03A-01D_TARGET-20-PATCYP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCYY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCYY-04A-01D	DNA	EFO	SRS637323	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCYY-04A-01D A42259 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42259	SRX597702	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCYY-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATCYY-04A-01D A42259 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42259_1_lane_dupsFlagged.bam	SRR1395005	@dbgap@:reads/SRP012000/SRS637323/SRX597702/SRR1395005/SRR1395005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCYY-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCYY-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATCYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCYY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCYY-04A-01D	DNA	EFO	SRS637323	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCYY-04A-01D A42259 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42259	SRX597702	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCYY-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATCYY-04A-01D A42259 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42259_1_lane_dupsFlagged.bam	SRR1395005	@dbgap@:reads/SRP012000/SRS637323/SRX597702/SRR1395005/SRR1395005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCYY-04A-01D_TARGET-20-PATCYY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCYY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCYY-04A-01D	DNA	EFO	SRS637323	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCYY-04A-01D A42259 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42259	SRX597702	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCYY-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATCYY-04A-01D A42259 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42259_1_lane_dupsFlagged.bam	SRR1395005	@dbgap@:reads/SRP012000/SRS637323/SRX597702/SRR1395005/SRR1395005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCYY-04A-01D_TARGET-20-PATCYY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCYY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCYY-09A-01D	DNA	EFO	SRS633947	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCYY-09A-01D A41478 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41478	SRX588553	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCYY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCYY-09A-01D A41478 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41478_1_lane_dupsFlagged.bam	SRR1374870	@dbgap@:reads/SRP012000/SRS633947/SRX588553/SRR1374870/SRR1374870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCYY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCYY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATCYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCYY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCYY-09A-01D	DNA	EFO	SRS633947	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCYY-09A-01D A41478 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41478	SRX588553	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCYY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCYY-09A-01D A41478 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41478_1_lane_dupsFlagged.bam	SRR1374870	@dbgap@:reads/SRP012000/SRS633947/SRX588553/SRR1374870/SRR1374870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCYY-09A-01D_TARGET-20-PATCYY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCYY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCYY-09A-01D	DNA	EFO	SRS633947	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCYY-09A-01D A41478 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41478	SRX588553	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATCYY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCYY-09A-01D A41478 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41478_1_lane_dupsFlagged.bam	SRR1374870	@dbgap@:reads/SRP012000/SRS633947/SRX588553/SRR1374870/SRR1374870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCYY-09A-01D_TARGET-20-PATCYY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCYY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCYY-14A-01D	DNA	EFO	SRS635704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCYY-14A-01D A41684 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41684	SRX593528	"Specific Capture analysis of normal sample TARGET-20-PATCYY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCYY-14A-01D A41684 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41684_1_lane_dupsFlagged.bam	SRR1385987	@dbgap@:reads/SRP012000/SRS635704/SRX593528/SRR1385987/SRR1385987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATCYY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATCYY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATCYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCYY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCYY-14A-01D	DNA	EFO	SRS635704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCYY-14A-01D A41684 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41684	SRX593528	"Specific Capture analysis of normal sample TARGET-20-PATCYY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCYY-14A-01D A41684 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41684_1_lane_dupsFlagged.bam	SRR1385987	@dbgap@:reads/SRP012000/SRS635704/SRX593528/SRR1385987/SRR1385987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCYY-04A-01D_TARGET-20-PATCYY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCYY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCYY-14A-01D	DNA	EFO	SRS635704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCYY-14A-01D A41684 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41684	SRX593528	"Specific Capture analysis of normal sample TARGET-20-PATCYY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCYY-14A-01D A41684 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41684_1_lane_dupsFlagged.bam	SRR1385987	@dbgap@:reads/SRP012000/SRS635704/SRX593528/SRR1385987/SRR1385987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCYY-04A-01D_TARGET-20-PATCYY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATCYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCYY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCYY-14A-01D	DNA	EFO	SRS635704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCYY-14A-01D A41684 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41684	SRX593528	"Specific Capture analysis of normal sample TARGET-20-PATCYY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCYY-14A-01D A41684 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41684_1_lane_dupsFlagged.bam	SRR1385987	@dbgap@:reads/SRP012000/SRS635704/SRX593528/SRR1385987/SRR1385987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCYY-09A-01D_TARGET-20-PATCYY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATCYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATCYY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATCYY-14A-01D	DNA	EFO	SRS635704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATCYY-14A-01D A41684 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41684	SRX593528	"Specific Capture analysis of normal sample TARGET-20-PATCYY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATCYY-14A-01D A41684 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41684_1_lane_dupsFlagged.bam	SRR1385987	@dbgap@:reads/SRP012000/SRS635704/SRX593528/SRR1385987/SRR1385987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATCYY-09A-01D_TARGET-20-PATCYY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDFZ-09A-01D	DNA	EFO	SRS635499	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDFZ-09A-01D A41707 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41707	SRX593222	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDFZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDFZ-09A-01D A41707 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41707_1_lane_dupsFlagged.bam	SRR1385608	@dbgap@:reads/SRP012000/SRS635499/SRX593222/SRR1385608/SRR1385608.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDFZ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDFZ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATDFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDFZ-09A-01D	DNA	EFO	SRS635499	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDFZ-09A-01D A41707 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41707	SRX593222	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDFZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDFZ-09A-01D A41707 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41707_1_lane_dupsFlagged.bam	SRR1385608	@dbgap@:reads/SRP012000/SRS635499/SRX593222/SRR1385608/SRR1385608.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDFZ-09A-01D_TARGET-20-PATDFZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDFZ-09A-01D	DNA	EFO	SRS635499	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDFZ-09A-01D A41707 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41707	SRX593222	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDFZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDFZ-09A-01D A41707 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41707_1_lane_dupsFlagged.bam	SRR1385608	@dbgap@:reads/SRP012000/SRS635499/SRX593222/SRR1385608/SRR1385608.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDFZ-09A-01D_TARGET-20-PATDFZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDFZ-14A-01D	DNA	EFO	SRS635693	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDFZ-14A-01D A41692 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41692	SRX593516	"Specific Capture analysis of normal sample TARGET-20-PATDFZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDFZ-14A-01D A41692 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41692_1_lane_dupsFlagged.bam	SRR1385959	@dbgap@:reads/SRP012000/SRS635693/SRX593516/SRR1385959/SRR1385959.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDFZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDFZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATDFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDFZ-14A-01D	DNA	EFO	SRS635693	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDFZ-14A-01D A41692 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41692	SRX593516	"Specific Capture analysis of normal sample TARGET-20-PATDFZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDFZ-14A-01D A41692 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41692_1_lane_dupsFlagged.bam	SRR1385959	@dbgap@:reads/SRP012000/SRS635693/SRX593516/SRR1385959/SRR1385959.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDFZ-09A-01D_TARGET-20-PATDFZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDFZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDFZ-14A-01D	DNA	EFO	SRS635693	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDFZ-14A-01D A41692 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41692	SRX593516	"Specific Capture analysis of normal sample TARGET-20-PATDFZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDFZ-14A-01D A41692 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41692_1_lane_dupsFlagged.bam	SRR1385959	@dbgap@:reads/SRP012000/SRS635693/SRX593516/SRR1385959/SRR1385959.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDFZ-09A-01D_TARGET-20-PATDFZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-02D	DNA	EFO	SRS628936	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDHA-09A-02D A32308 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32308	SRX574993	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDHA-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATDHA-09A-02D A32308 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32308_1_lane_dupsFlagged.bam	SRR1346208	@dbgap@:reads/SRP012000/SRS628936/SRX574993/SRR1346208/SRR1346208.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDHA-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDHA-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATDIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDIC-09A-01D	DNA	EFO	SRS633915	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDIC-09A-01D A41480 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41480	SRX588520	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDIC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDIC-09A-01D A41480 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41480_1_lane_dupsFlagged.bam	SRR1374906	@dbgap@:reads/SRP012000/SRS633915/SRX588520/SRR1374906/SRR1374906.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDIC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDIC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATDIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDIC-09A-01D	DNA	EFO	SRS633915	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDIC-09A-01D A41480 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41480	SRX588520	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDIC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDIC-09A-01D A41480 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41480_1_lane_dupsFlagged.bam	SRR1374906	@dbgap@:reads/SRP012000/SRS633915/SRX588520/SRR1374906/SRR1374906.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDIC-09A-01D_TARGET-20-PATDIC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDIC-09A-01D	DNA	EFO	SRS633915	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDIC-09A-01D A41480 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41480	SRX588520	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDIC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDIC-09A-01D A41480 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41480_1_lane_dupsFlagged.bam	SRR1374906	@dbgap@:reads/SRP012000/SRS633915/SRX588520/SRR1374906/SRR1374906.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDIC-09A-01D_TARGET-20-PATDIC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDIC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDIC-14A-01D	DNA	EFO	SRS636027	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDIC-14A-01D A42587 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42587	SRX594004	"Specific Capture analysis of normal sample TARGET-20-PATDIC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATDIC-14A-01D A42587 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42587_1_lane_dupsFlagged.bam	SRR1386477	@dbgap@:reads/SRP012000/SRS636027/SRX594004/SRR1386477/SRR1386477.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDIC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDIC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATDIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDIC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDIC-14A-01D	DNA	EFO	SRS636027	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDIC-14A-01D A42587 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42587	SRX594004	"Specific Capture analysis of normal sample TARGET-20-PATDIC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATDIC-14A-01D A42587 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42587_1_lane_dupsFlagged.bam	SRR1386477	@dbgap@:reads/SRP012000/SRS636027/SRX594004/SRR1386477/SRR1386477.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDIC-09A-01D_TARGET-20-PATDIC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDIC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDIC-14A-01D	DNA	EFO	SRS636027	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDIC-14A-01D A42587 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42587	SRX594004	"Specific Capture analysis of normal sample TARGET-20-PATDIC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATDIC-14A-01D A42587 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42587_1_lane_dupsFlagged.bam	SRR1386477	@dbgap@:reads/SRP012000/SRS636027/SRX594004/SRR1386477/SRR1386477.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDIC-09A-01D_TARGET-20-PATDIC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDLH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDLH-03A-01D	DNA	EFO	SRS633889	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDLH-03A-01D A41481 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41481	SRX588493	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDLH-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDLH-03A-01D A41481 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41481_1_lane_dupsFlagged.bam	SRR1374827	@dbgap@:reads/SRP012000/SRS633889/SRX588493/SRR1374827/SRR1374827.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDLH-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDLH-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATDLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDLI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDLI-09A-01D	DNA	EFO	SRS629187	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDLI-09A-01D A33301 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33301	SRX575242	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDLI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATDLI-09A-01D A33301 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33301_1_lane_dupsFlagged.bam	SRR1346441	@dbgap@:reads/SRP012000/SRS629187/SRX575242/SRR1346441/SRR1346441.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDLI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDLI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATDLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDLI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDLI-09A-01D	DNA	EFO	SRS629187	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDLI-09A-01D A33301 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33301	SRX575242	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDLI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATDLI-09A-01D A33301 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33301_1_lane_dupsFlagged.bam	SRR1346441	@dbgap@:reads/SRP012000/SRS629187/SRX575242/SRR1346441/SRR1346441.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDLI-09A-01D_TARGET-20-PATDLI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDLI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDLI-09A-01D	DNA	EFO	SRS629187	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDLI-09A-01D A33301 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33301	SRX575242	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDLI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATDLI-09A-01D A33301 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33301_1_lane_dupsFlagged.bam	SRR1346441	@dbgap@:reads/SRP012000/SRS629187/SRX575242/SRR1346441/SRR1346441.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDLI-09A-01D_TARGET-20-PATDLI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDLI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDLI-14A-01D	DNA	EFO	SRS635740	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDLI-14A-01D A42315 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42315	SRX593572	"Specific Capture analysis of normal sample TARGET-20-PATDLI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATDLI-14A-01D A42315 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42315_1_lane_dupsFlagged.bam	SRR1386081	@dbgap@:reads/SRP012000/SRS635740/SRX593572/SRR1386081/SRR1386081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDLI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDLI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATDLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDLI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDLI-14A-01D	DNA	EFO	SRS635740	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDLI-14A-01D A42315 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42315	SRX593572	"Specific Capture analysis of normal sample TARGET-20-PATDLI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATDLI-14A-01D A42315 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42315_1_lane_dupsFlagged.bam	SRR1386081	@dbgap@:reads/SRP012000/SRS635740/SRX593572/SRR1386081/SRR1386081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDLI-09A-01D_TARGET-20-PATDLI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDLI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDLI-14A-01D	DNA	EFO	SRS635740	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDLI-14A-01D A42315 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42315	SRX593572	"Specific Capture analysis of normal sample TARGET-20-PATDLI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATDLI-14A-01D A42315 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42315_1_lane_dupsFlagged.bam	SRR1386081	@dbgap@:reads/SRP012000/SRS635740/SRX593572/SRR1386081/SRR1386081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDLI-09A-01D_TARGET-20-PATDLI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDLZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDLZ-09A-01D	DNA	EFO	SRS633955	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDLZ-09A-01D A41483 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41483	SRX588562	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDLZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDLZ-09A-01D A41483 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41483_1_lane_dupsFlagged.bam	SRR1374859	@dbgap@:reads/SRP012000/SRS633955/SRX588562/SRR1374859/SRR1374859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDLZ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDLZ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATDLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDLZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDLZ-09A-01D	DNA	EFO	SRS633955	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDLZ-09A-01D A41483 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41483	SRX588562	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDLZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDLZ-09A-01D A41483 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41483_1_lane_dupsFlagged.bam	SRR1374859	@dbgap@:reads/SRP012000/SRS633955/SRX588562/SRR1374859/SRR1374859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDLZ-09A-01D_TARGET-20-PATDLZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDLZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDLZ-09A-01D	DNA	EFO	SRS633955	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDLZ-09A-01D A41483 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41483	SRX588562	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDLZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDLZ-09A-01D A41483 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41483_1_lane_dupsFlagged.bam	SRR1374859	@dbgap@:reads/SRP012000/SRS633955/SRX588562/SRR1374859/SRR1374859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDLZ-09A-01D_TARGET-20-PATDLZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDLZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDLZ-14A-01D	DNA	EFO	SRS637379	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDLZ-14A-01D A42848 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42848	SRX597784	"Specific Capture analysis of normal sample TARGET-20-PATDLZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATDLZ-14A-01D A42848 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42848_1_lane_dupsFlagged.bam	SRR1395127	@dbgap@:reads/SRP012000/SRS637379/SRX597784/SRR1395127/SRR1395127.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDLZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDLZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATDLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDLZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDLZ-14A-01D	DNA	EFO	SRS637379	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDLZ-14A-01D A42848 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42848	SRX597784	"Specific Capture analysis of normal sample TARGET-20-PATDLZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATDLZ-14A-01D A42848 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42848_1_lane_dupsFlagged.bam	SRR1395127	@dbgap@:reads/SRP012000/SRS637379/SRX597784/SRR1395127/SRR1395127.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDLZ-09A-01D_TARGET-20-PATDLZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDLZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDLZ-14A-01D	DNA	EFO	SRS637379	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDLZ-14A-01D A42848 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A42848	SRX597784	"Specific Capture analysis of normal sample TARGET-20-PATDLZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATDLZ-14A-01D A42848 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42848_1_lane_dupsFlagged.bam	SRR1395127	@dbgap@:reads/SRP012000/SRS637379/SRX597784/SRR1395127/SRR1395127.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDLZ-09A-01D_TARGET-20-PATDLZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDMY-09A-01D	DNA	EFO	SRS633922	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDMY-09A-01D A41482 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41482	SRX588527	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDMY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDMY-09A-01D A41482 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41482_1_lane_dupsFlagged.bam	SRR1374895	@dbgap@:reads/SRP012000/SRS633922/SRX588527/SRR1374895/SRR1374895.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDMY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDMY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATDMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDMY-09A-01D	DNA	EFO	SRS633922	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDMY-09A-01D A41482 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41482	SRX588527	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDMY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDMY-09A-01D A41482 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41482_1_lane_dupsFlagged.bam	SRR1374895	@dbgap@:reads/SRP012000/SRS633922/SRX588527/SRR1374895/SRR1374895.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDMY-09A-01D_TARGET-20-PATDMY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDMY-09A-01D	DNA	EFO	SRS633922	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDMY-09A-01D A41482 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41482	SRX588527	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDMY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDMY-09A-01D A41482 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41482_1_lane_dupsFlagged.bam	SRR1374895	@dbgap@:reads/SRP012000/SRS633922/SRX588527/SRR1374895/SRR1374895.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDMY-09A-01D_TARGET-20-PATDMY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDMY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDMY-14A-01D	DNA	EFO	SRS636019	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDMY-14A-01D A42584 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42584	SRX593994	"Specific Capture analysis of normal sample TARGET-20-PATDMY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATDMY-14A-01D A42584 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42584_1_lane_dupsFlagged.bam	SRR1386461	@dbgap@:reads/SRP012000/SRS636019/SRX593994/SRR1386461/SRR1386461.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDMY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDMY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATDMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDMY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDMY-14A-01D	DNA	EFO	SRS636019	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDMY-14A-01D A42584 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42584	SRX593994	"Specific Capture analysis of normal sample TARGET-20-PATDMY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATDMY-14A-01D A42584 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42584_1_lane_dupsFlagged.bam	SRR1386461	@dbgap@:reads/SRP012000/SRS636019/SRX593994/SRR1386461/SRR1386461.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDMY-09A-01D_TARGET-20-PATDMY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDMY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDMY-14A-01D	DNA	EFO	SRS636019	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDMY-14A-01D A42584 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42584	SRX593994	"Specific Capture analysis of normal sample TARGET-20-PATDMY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATDMY-14A-01D A42584 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42584_1_lane_dupsFlagged.bam	SRR1386461	@dbgap@:reads/SRP012000/SRS636019/SRX593994/SRR1386461/SRR1386461.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDMY-09A-01D_TARGET-20-PATDMY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-01D	DNA	EFO	SRS270807	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-04A-01D A42255 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42255	SRX597740	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDNN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATDNN-04A-01D A42255 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42255_1_lane_dupsFlagged.bam	SRR1394994	@dbgap@:reads/SRP012000/SRS270807/SRX597740/SRR1394994/SRR1394994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDNN-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDNN-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-01D	DNA	EFO	SRS270807	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-04A-01D A42255 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42255	SRX597740	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDNN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATDNN-04A-01D A42255 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42255_1_lane_dupsFlagged.bam	SRR1394994	@dbgap@:reads/SRP012000/SRS270807/SRX597740/SRR1394994/SRR1394994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDNN-04A-01D_TARGET-20-PATDNN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-01D	DNA	EFO	SRS270807	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-04A-01D A42255 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42255	SRX597740	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDNN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATDNN-04A-01D A42255 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42255_1_lane_dupsFlagged.bam	SRR1394994	@dbgap@:reads/SRP012000/SRS270807/SRX597740/SRR1394994/SRR1394994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDNN-04A-01D_TARGET-20-PATDNN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-01D	DNA	EFO	SRS287521	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-09A-01D A31198 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31198	SRX573402	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDNN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATDNN-09A-01D A31198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31198_1_lane_dupsFlagged.bam	SRR1342680	@dbgap@:reads/SRP012000/SRS287521/SRX573402/SRR1342680/SRR1342680.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDNN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDNN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-01D	DNA	EFO	SRS287521	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-09A-01D A31198 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31198	SRX573402	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDNN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATDNN-09A-01D A31198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31198_1_lane_dupsFlagged.bam	SRR1342680	@dbgap@:reads/SRP012000/SRS287521/SRX573402/SRR1342680/SRR1342680.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDNN-09A-01D_TARGET-20-PATDNN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-01D	DNA	EFO	SRS287521	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-09A-01D A31198 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31198	SRX573402	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDNN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATDNN-09A-01D A31198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31198_1_lane_dupsFlagged.bam	SRR1342680	@dbgap@:reads/SRP012000/SRS287521/SRX573402/SRR1342680/SRR1342680.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDNN-09A-01D_TARGET-20-PATDNN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-10A-01D A42354 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42354	SRX593625	"Specific Capture analysis of normal sample TARGET-20-PATDNN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATDNN-10A-01D A42354 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42354_1_lane_dupsFlagged.bam	SRR1386095	@dbgap@:reads/SRP012000/SRS270808/SRX593625/SRR1386095/SRR1386095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDNN-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDNN-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-10A-01D A42354 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42354	SRX593625	"Specific Capture analysis of normal sample TARGET-20-PATDNN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATDNN-10A-01D A42354 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42354_1_lane_dupsFlagged.bam	SRR1386095	@dbgap@:reads/SRP012000/SRS270808/SRX593625/SRR1386095/SRR1386095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDNN-04A-01D_TARGET-20-PATDNN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-10A-01D A42354 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42354	SRX593625	"Specific Capture analysis of normal sample TARGET-20-PATDNN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATDNN-10A-01D A42354 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42354_1_lane_dupsFlagged.bam	SRR1386095	@dbgap@:reads/SRP012000/SRS270808/SRX593625/SRR1386095/SRR1386095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDNN-04A-01D_TARGET-20-PATDNN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-10A-01D A42354 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42354	SRX593625	"Specific Capture analysis of normal sample TARGET-20-PATDNN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATDNN-10A-01D A42354 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42354_1_lane_dupsFlagged.bam	SRR1386095	@dbgap@:reads/SRP012000/SRS270808/SRX593625/SRR1386095/SRR1386095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDNN-09A-01D_TARGET-20-PATDNN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-10A-01D	DNA	EFO	SRS270808	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-10A-01D A42354 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42354	SRX593625	"Specific Capture analysis of normal sample TARGET-20-PATDNN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATDNN-10A-01D A42354 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42354_1_lane_dupsFlagged.bam	SRR1386095	@dbgap@:reads/SRP012000/SRS270808/SRX593625/SRR1386095/SRR1386095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDNN-09A-01D_TARGET-20-PATDNN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDRB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDRB-09A-01D	DNA	EFO	SRS629190	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDRB-09A-01D A33302 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33302	SRX575245	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDRB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATDRB-09A-01D A33302 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33302_1_lane_dupsFlagged.bam	SRR1346504	@dbgap@:reads/SRP012000/SRS629190/SRX575245/SRR1346504/SRR1346504.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDRB-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDRB-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATDRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDRB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDRB-09A-01D	DNA	EFO	SRS629190	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDRB-09A-01D A33302 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33302	SRX575245	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDRB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATDRB-09A-01D A33302 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33302_1_lane_dupsFlagged.bam	SRR1346504	@dbgap@:reads/SRP012000/SRS629190/SRX575245/SRR1346504/SRR1346504.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDRB-09A-01D_TARGET-20-PATDRB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDRB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDRB-09A-01D	DNA	EFO	SRS629190	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDRB-09A-01D A33302 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33302	SRX575245	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDRB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATDRB-09A-01D A33302 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33302_1_lane_dupsFlagged.bam	SRR1346504	@dbgap@:reads/SRP012000/SRS629190/SRX575245/SRR1346504/SRR1346504.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDRB-09A-01D_TARGET-20-PATDRB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDRB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDRB-14A-01D	DNA	EFO	SRS637540	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDRB-14A-01D A42770 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42770	SRX597978	"Specific Capture analysis of normal sample TARGET-20-PATDRB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATDRB-14A-01D A42770 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42770_1_lane_dupsFlagged.bam	SRR1395285	@dbgap@:reads/SRP012000/SRS637540/SRX597978/SRR1395285/SRR1395285.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDRB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDRB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATDRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDRB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDRB-14A-01D	DNA	EFO	SRS637540	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDRB-14A-01D A42770 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42770	SRX597978	"Specific Capture analysis of normal sample TARGET-20-PATDRB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATDRB-14A-01D A42770 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42770_1_lane_dupsFlagged.bam	SRR1395285	@dbgap@:reads/SRP012000/SRS637540/SRX597978/SRR1395285/SRR1395285.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDRB-09A-01D_TARGET-20-PATDRB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDRB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDRB-14A-01D	DNA	EFO	SRS637540	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDRB-14A-01D A42770 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	358	A42770	SRX597978	"Specific Capture analysis of normal sample TARGET-20-PATDRB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATDRB-14A-01D A42770 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42770_1_lane_dupsFlagged.bam	SRR1395285	@dbgap@:reads/SRP012000/SRS637540/SRX597978/SRR1395285/SRR1395285.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDRB-09A-01D_TARGET-20-PATDRB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDRL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDRL-09A-01D	DNA	EFO	SRS633972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDRL-09A-01D A41484 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41484	SRX588578	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDRL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDRL-09A-01D A41484 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41484_1_lane_dupsFlagged.bam	SRR1374903	@dbgap@:reads/SRP012000/SRS633972/SRX588578/SRR1374903/SRR1374903.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDRL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDRL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATDRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDRL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDRL-09A-01D	DNA	EFO	SRS633972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDRL-09A-01D A41484 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41484	SRX588578	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDRL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDRL-09A-01D A41484 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41484_1_lane_dupsFlagged.bam	SRR1374903	@dbgap@:reads/SRP012000/SRS633972/SRX588578/SRR1374903/SRR1374903.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDRL-09A-01D_TARGET-20-PATDRL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDRL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDRL-09A-01D	DNA	EFO	SRS633972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDRL-09A-01D A41484 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41484	SRX588578	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDRL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDRL-09A-01D A41484 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41484_1_lane_dupsFlagged.bam	SRR1374903	@dbgap@:reads/SRP012000/SRS633972/SRX588578/SRR1374903/SRR1374903.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDRL-09A-01D_TARGET-20-PATDRL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDRL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDRL-14A-01D	DNA	EFO	SRS635947	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDRL-14A-01D A42527 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42527	SRX593908	"Specific Capture analysis of normal sample TARGET-20-PATDRL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATDRL-14A-01D A42527 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42527_1_lane_dupsFlagged.bam	SRR1386394	@dbgap@:reads/SRP012000/SRS635947/SRX593908/SRR1386394/SRR1386394.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDRL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDRL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATDRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDRL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDRL-14A-01D	DNA	EFO	SRS635947	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDRL-14A-01D A42527 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42527	SRX593908	"Specific Capture analysis of normal sample TARGET-20-PATDRL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATDRL-14A-01D A42527 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42527_1_lane_dupsFlagged.bam	SRR1386394	@dbgap@:reads/SRP012000/SRS635947/SRX593908/SRR1386394/SRR1386394.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDRL-09A-01D_TARGET-20-PATDRL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDRL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDRL-14A-01D	DNA	EFO	SRS635947	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDRL-14A-01D A42527 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42527	SRX593908	"Specific Capture analysis of normal sample TARGET-20-PATDRL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATDRL-14A-01D A42527 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42527_1_lane_dupsFlagged.bam	SRR1386394	@dbgap@:reads/SRP012000/SRS635947/SRX593908/SRR1386394/SRR1386394.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDRL-09A-01D_TARGET-20-PATDRL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDRZ-09A-01D	DNA	EFO	SRS629133	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDRZ-09A-01D A33305 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33305	SRX575189	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDRZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATDRZ-09A-01D A33305 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33305_1_lane_dupsFlagged.bam	SRR1346481	@dbgap@:reads/SRP012000/SRS629133/SRX575189/SRR1346481/SRR1346481.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDRZ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDRZ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATDRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDRZ-09A-01D	DNA	EFO	SRS629133	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDRZ-09A-01D A33305 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33305	SRX575189	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDRZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATDRZ-09A-01D A33305 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33305_1_lane_dupsFlagged.bam	SRR1346481	@dbgap@:reads/SRP012000/SRS629133/SRX575189/SRR1346481/SRR1346481.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDRZ-09A-01D_TARGET-20-PATDRZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDRZ-09A-01D	DNA	EFO	SRS629133	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDRZ-09A-01D A33305 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33305	SRX575189	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDRZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATDRZ-09A-01D A33305 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33305_1_lane_dupsFlagged.bam	SRR1346481	@dbgap@:reads/SRP012000/SRS629133/SRX575189/SRR1346481/SRR1346481.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDRZ-09A-01D_TARGET-20-PATDRZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDRZ-14A-01D	DNA	EFO	SRS635746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDRZ-14A-01D A42317 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42317	SRX593578	"Specific Capture analysis of normal sample TARGET-20-PATDRZ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATDRZ-14A-01D A42317 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42317_1_lane_dupsFlagged.bam	SRR1386070	@dbgap@:reads/SRP012000/SRS635746/SRX593578/SRR1386070/SRR1386070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDRZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDRZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATDRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDRZ-14A-01D	DNA	EFO	SRS635746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDRZ-14A-01D A42317 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42317	SRX593578	"Specific Capture analysis of normal sample TARGET-20-PATDRZ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATDRZ-14A-01D A42317 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42317_1_lane_dupsFlagged.bam	SRR1386070	@dbgap@:reads/SRP012000/SRS635746/SRX593578/SRR1386070/SRR1386070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDRZ-09A-01D_TARGET-20-PATDRZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDRZ-14A-01D	DNA	EFO	SRS635746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDRZ-14A-01D A42317 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42317	SRX593578	"Specific Capture analysis of normal sample TARGET-20-PATDRZ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATDRZ-14A-01D A42317 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42317_1_lane_dupsFlagged.bam	SRR1386070	@dbgap@:reads/SRP012000/SRS635746/SRX593578/SRR1386070/SRR1386070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDRZ-09A-01D_TARGET-20-PATDRZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDVM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDVM-03A-01D	DNA	EFO	SRS629144	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDVM-03A-01D A33304 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33304	SRX575199	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDVM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATDVM-03A-01D A33304 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33304_1_lane_dupsFlagged.bam	SRR1346471	@dbgap@:reads/SRP012000/SRS629144/SRX575199/SRR1346471/SRR1346471.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDVM-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDVM-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATDVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDVM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDVM-03A-01D	DNA	EFO	SRS629144	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDVM-03A-01D A33304 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33304	SRX575199	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDVM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATDVM-03A-01D A33304 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33304_1_lane_dupsFlagged.bam	SRR1346471	@dbgap@:reads/SRP012000/SRS629144/SRX575199/SRR1346471/SRR1346471.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDVM-03A-01D_TARGET-20-PATDVM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDVM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDVM-03A-01D	DNA	EFO	SRS629144	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDVM-03A-01D A33304 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33304	SRX575199	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDVM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATDVM-03A-01D A33304 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33304_1_lane_dupsFlagged.bam	SRR1346471	@dbgap@:reads/SRP012000/SRS629144/SRX575199/SRR1346471/SRR1346471.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDVM-03A-01D_TARGET-20-PATDVM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDVM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDVM-14A-01D	DNA	EFO	SRS635659	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDVM-14A-01D A41693 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41693	SRX593482	"Specific Capture analysis of normal sample TARGET-20-PATDVM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDVM-14A-01D A41693 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41693_1_lane_dupsFlagged.bam	SRR1386006	@dbgap@:reads/SRP012000/SRS635659/SRX593482/SRR1386006/SRR1386006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDVM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDVM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATDVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDVM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDVM-14A-01D	DNA	EFO	SRS635659	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDVM-14A-01D A41693 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41693	SRX593482	"Specific Capture analysis of normal sample TARGET-20-PATDVM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDVM-14A-01D A41693 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41693_1_lane_dupsFlagged.bam	SRR1386006	@dbgap@:reads/SRP012000/SRS635659/SRX593482/SRR1386006/SRR1386006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDVM-03A-01D_TARGET-20-PATDVM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDVM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDVM-14A-01D	DNA	EFO	SRS635659	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDVM-14A-01D A41693 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41693	SRX593482	"Specific Capture analysis of normal sample TARGET-20-PATDVM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDVM-14A-01D A41693 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41693_1_lane_dupsFlagged.bam	SRR1386006	@dbgap@:reads/SRP012000/SRS635659/SRX593482/SRR1386006/SRR1386006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDVM-03A-01D_TARGET-20-PATDVM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDYY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDYY-09A-01D	DNA	EFO	SRS633895	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDYY-09A-01D A41485 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41485	SRX588499	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDYY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDYY-09A-01D A41485 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41485_1_lane_dupsFlagged.bam	SRR1374865	@dbgap@:reads/SRP012000/SRS633895/SRX588499/SRR1374865/SRR1374865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDYY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDYY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATDYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDYY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDYY-09A-01D	DNA	EFO	SRS633895	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDYY-09A-01D A41485 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41485	SRX588499	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDYY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDYY-09A-01D A41485 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41485_1_lane_dupsFlagged.bam	SRR1374865	@dbgap@:reads/SRP012000/SRS633895/SRX588499/SRR1374865/SRR1374865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDYY-09A-01D_TARGET-20-PATDYY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDYY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDYY-09A-01D	DNA	EFO	SRS633895	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDYY-09A-01D A41485 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41485	SRX588499	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATDYY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATDYY-09A-01D A41485 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41485_1_lane_dupsFlagged.bam	SRR1374865	@dbgap@:reads/SRP012000/SRS633895/SRX588499/SRR1374865/SRR1374865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDYY-09A-01D_TARGET-20-PATDYY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATDYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDYY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDYY-14A-01D	DNA	EFO	SRS637376	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDYY-14A-01D A42850 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42850	SRX597780	"Specific Capture analysis of normal sample TARGET-20-PATDYY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATDYY-14A-01D A42850 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42850_1_lane_dupsFlagged.bam	SRR1395111	@dbgap@:reads/SRP012000/SRS637376/SRX597780/SRR1395111/SRR1395111.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATDYY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATDYY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATDYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDYY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDYY-14A-01D	DNA	EFO	SRS637376	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDYY-14A-01D A42850 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42850	SRX597780	"Specific Capture analysis of normal sample TARGET-20-PATDYY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATDYY-14A-01D A42850 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42850_1_lane_dupsFlagged.bam	SRR1395111	@dbgap@:reads/SRP012000/SRS637376/SRX597780/SRR1395111/SRR1395111.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDYY-09A-01D_TARGET-20-PATDYY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATDYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATDYY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDYY-14A-01D	DNA	EFO	SRS637376	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDYY-14A-01D A42850 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A42850	SRX597780	"Specific Capture analysis of normal sample TARGET-20-PATDYY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATDYY-14A-01D A42850 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42850_1_lane_dupsFlagged.bam	SRR1395111	@dbgap@:reads/SRP012000/SRS637376/SRX597780/SRR1395111/SRR1395111.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATDYY-09A-01D_TARGET-20-PATDYY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATEEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEEA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEEA-09A-01D	DNA	EFO	SRS633926	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEEA-09A-01D A41486 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41486	SRX588531	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEEA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATEEA-09A-01D A41486 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41486_1_lane_dupsFlagged.bam	SRR1374896	@dbgap@:reads/SRP012000/SRS633926/SRX588531/SRR1374896/SRR1374896.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATEEA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATEEA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATEEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEEA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEEA-09A-01D	DNA	EFO	SRS633926	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEEA-09A-01D A41486 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41486	SRX588531	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEEA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATEEA-09A-01D A41486 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41486_1_lane_dupsFlagged.bam	SRR1374896	@dbgap@:reads/SRP012000/SRS633926/SRX588531/SRR1374896/SRR1374896.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEEA-09A-01D_TARGET-20-PATEEA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATEEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEEA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEEA-09A-01D	DNA	EFO	SRS633926	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEEA-09A-01D A41486 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41486	SRX588531	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEEA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATEEA-09A-01D A41486 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41486_1_lane_dupsFlagged.bam	SRR1374896	@dbgap@:reads/SRP012000/SRS633926/SRX588531/SRR1374896/SRR1374896.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEEA-09A-01D_TARGET-20-PATEEA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATEEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEEA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEEA-14A-01D	DNA	EFO	SRS635766	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEEA-14A-01D A42346 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42346	SRX593601	"Specific Capture analysis of normal sample TARGET-20-PATEEA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATEEA-14A-01D A42346 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42346_1_lane_dupsFlagged.bam	SRR1386040	@dbgap@:reads/SRP012000/SRS635766/SRX593601/SRR1386040/SRR1386040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATEEA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATEEA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATEEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEEA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEEA-14A-01D	DNA	EFO	SRS635766	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEEA-14A-01D A42346 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42346	SRX593601	"Specific Capture analysis of normal sample TARGET-20-PATEEA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATEEA-14A-01D A42346 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42346_1_lane_dupsFlagged.bam	SRR1386040	@dbgap@:reads/SRP012000/SRS635766/SRX593601/SRR1386040/SRR1386040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEEA-09A-01D_TARGET-20-PATEEA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATEEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEEA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEEA-14A-01D	DNA	EFO	SRS635766	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEEA-14A-01D A42346 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42346	SRX593601	"Specific Capture analysis of normal sample TARGET-20-PATEEA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATEEA-14A-01D A42346 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42346_1_lane_dupsFlagged.bam	SRR1386040	@dbgap@:reads/SRP012000/SRS635766/SRX593601/SRR1386040/SRR1386040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEEA-09A-01D_TARGET-20-PATEEA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEFH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEFH-09A-01D	DNA	EFO	SRS635476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEFH-09A-01D A41708 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41708	SRX593198	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEFH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATEFH-09A-01D A41708 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41708_1_lane_dupsFlagged.bam	SRR1385664	@dbgap@:reads/SRP012000/SRS635476/SRX593198/SRR1385664/SRR1385664.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATEFH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATEFH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEFH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEFH-09A-01D	DNA	EFO	SRS635476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEFH-09A-01D A41708 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41708	SRX593198	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEFH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATEFH-09A-01D A41708 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41708_1_lane_dupsFlagged.bam	SRR1385664	@dbgap@:reads/SRP012000/SRS635476/SRX593198/SRR1385664/SRR1385664.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEFH-09A-01D_TARGET-20-PATEFH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEFH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEFH-09A-01D	DNA	EFO	SRS635476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEFH-09A-01D A41708 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41708	SRX593198	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEFH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATEFH-09A-01D A41708 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41708_1_lane_dupsFlagged.bam	SRR1385664	@dbgap@:reads/SRP012000/SRS635476/SRX593198/SRR1385664/SRR1385664.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEFH-09A-01D_TARGET-20-PATEFH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEFH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEFH-14A-01D	DNA	EFO	SRS635780	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEFH-14A-01D A42316 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42316	SRX593617	"Specific Capture analysis of normal sample TARGET-20-PATEFH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATEFH-14A-01D A42316 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42316_1_lane_dupsFlagged.bam	SRR1386036	@dbgap@:reads/SRP012000/SRS635780/SRX593617/SRR1386036/SRR1386036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATEFH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATEFH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEFH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEFH-14A-01D	DNA	EFO	SRS635780	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEFH-14A-01D A42316 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42316	SRX593617	"Specific Capture analysis of normal sample TARGET-20-PATEFH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATEFH-14A-01D A42316 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42316_1_lane_dupsFlagged.bam	SRR1386036	@dbgap@:reads/SRP012000/SRS635780/SRX593617/SRR1386036/SRR1386036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEFH-09A-01D_TARGET-20-PATEFH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEFH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEFH-14A-01D	DNA	EFO	SRS635780	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEFH-14A-01D A42316 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42316	SRX593617	"Specific Capture analysis of normal sample TARGET-20-PATEFH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATEFH-14A-01D A42316 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42316_1_lane_dupsFlagged.bam	SRR1386036	@dbgap@:reads/SRP012000/SRS635780/SRX593617/SRR1386036/SRR1386036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEFH-09A-01D_TARGET-20-PATEFH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATEIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEIA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEIA-03A-01D	DNA	EFO	SRS629150	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEIA-03A-01D A33307 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33307	SRX575206	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEIA-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATEIA-03A-01D A33307 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33307_1_lane_dupsFlagged.bam	SRR1346437	@dbgap@:reads/SRP012000/SRS629150/SRX575206/SRR1346437/SRR1346437.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATEIA-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATEIA-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATEIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEIA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEIA-03A-01D	DNA	EFO	SRS629150	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEIA-03A-01D A33307 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33307	SRX575206	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEIA-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATEIA-03A-01D A33307 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33307_1_lane_dupsFlagged.bam	SRR1346437	@dbgap@:reads/SRP012000/SRS629150/SRX575206/SRR1346437/SRR1346437.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEIA-03A-01D_TARGET-20-PATEIA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATEIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEIA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEIA-03A-01D	DNA	EFO	SRS629150	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEIA-03A-01D A33307 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33307	SRX575206	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEIA-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATEIA-03A-01D A33307 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33307_1_lane_dupsFlagged.bam	SRR1346437	@dbgap@:reads/SRP012000/SRS629150/SRX575206/SRR1346437/SRR1346437.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEIA-03A-01D_TARGET-20-PATEIA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATEIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEIA-10A-01D	DNA	EFO	SRS635875	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEIA-10A-01D A42537 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42537	SRX593834	"Specific Capture analysis of normal sample TARGET-20-PATEIA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATEIA-10A-01D A42537 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42537_1_lane_dupsFlagged.bam	SRR1386384	@dbgap@:reads/SRP012000/SRS635875/SRX593834/SRR1386384/SRR1386384.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATEIA-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATEIA-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATEIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEIA-10A-01D	DNA	EFO	SRS635875	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEIA-10A-01D A42537 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42537	SRX593834	"Specific Capture analysis of normal sample TARGET-20-PATEIA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATEIA-10A-01D A42537 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42537_1_lane_dupsFlagged.bam	SRR1386384	@dbgap@:reads/SRP012000/SRS635875/SRX593834/SRR1386384/SRR1386384.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEIA-03A-01D_TARGET-20-PATEIA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATEIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEIA-10A-01D	DNA	EFO	SRS635875	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEIA-10A-01D A42537 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42537	SRX593834	"Specific Capture analysis of normal sample TARGET-20-PATEIA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATEIA-10A-01D A42537 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42537_1_lane_dupsFlagged.bam	SRR1386384	@dbgap@:reads/SRP012000/SRS635875/SRX593834/SRR1386384/SRR1386384.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEIA-03A-01D_TARGET-20-PATEIA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATEID	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEID-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEID-09A-01D	DNA	EFO	SRS629107	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEID-09A-01D A33308 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33308	SRX575163	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEID-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATEID-09A-01D A33308 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33308_1_lane_dupsFlagged.bam	SRR1346479	@dbgap@:reads/SRP012000/SRS629107/SRX575163/SRR1346479/SRR1346479.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATEID-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATEID-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATEID	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEID-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEID-09A-01D	DNA	EFO	SRS629107	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEID-09A-01D A33308 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33308	SRX575163	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEID-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATEID-09A-01D A33308 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33308_1_lane_dupsFlagged.bam	SRR1346479	@dbgap@:reads/SRP012000/SRS629107/SRX575163/SRR1346479/SRR1346479.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEID-09A-01D_TARGET-20-PATEID-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATEID	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEID-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEID-09A-01D	DNA	EFO	SRS629107	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEID-09A-01D A33308 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33308	SRX575163	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEID-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATEID-09A-01D A33308 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33308_1_lane_dupsFlagged.bam	SRR1346479	@dbgap@:reads/SRP012000/SRS629107/SRX575163/SRR1346479/SRR1346479.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEID-09A-01D_TARGET-20-PATEID-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATEID	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEID-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEID-14A-01D	DNA	EFO	SRS635895	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEID-14A-01D A42529 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42529	SRX593855	"Specific Capture analysis of normal sample TARGET-20-PATEID-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATEID-14A-01D A42529 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42529_1_lane_dupsFlagged.bam	SRR1386331	@dbgap@:reads/SRP012000/SRS635895/SRX593855/SRR1386331/SRR1386331.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATEID-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATEID-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATEID	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEID-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEID-14A-01D	DNA	EFO	SRS635895	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEID-14A-01D A42529 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42529	SRX593855	"Specific Capture analysis of normal sample TARGET-20-PATEID-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATEID-14A-01D A42529 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42529_1_lane_dupsFlagged.bam	SRR1386331	@dbgap@:reads/SRP012000/SRS635895/SRX593855/SRR1386331/SRR1386331.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEID-09A-01D_TARGET-20-PATEID-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATEID	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEID-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEID-14A-01D	DNA	EFO	SRS635895	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEID-14A-01D A42529 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42529	SRX593855	"Specific Capture analysis of normal sample TARGET-20-PATEID-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATEID-14A-01D A42529 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42529_1_lane_dupsFlagged.bam	SRR1386331	@dbgap@:reads/SRP012000/SRS635895/SRX593855/SRR1386331/SRR1386331.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEID-09A-01D_TARGET-20-PATEID-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-03D	DNA	EFO	SRS628917	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATELT-03A-03D A32309 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32309	SRX574973	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATELT-03A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATELT-03A-03D A32309 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32309_1_lane_dupsFlagged.bam	SRR1346177	@dbgap@:reads/SRP012000/SRS628917/SRX574973/SRR1346177/SRR1346177.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATELT-03A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATELT-03A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATELV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATELV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELV-09A-01D	DNA	EFO	SRS629143	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATELV-09A-01D A33309 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33309	SRX575200	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATELV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATELV-09A-01D A33309 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33309_1_lane_dupsFlagged.bam	SRR1346457	@dbgap@:reads/SRP012000/SRS629143/SRX575200/SRR1346457/SRR1346457.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATELV-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATELV-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATEMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEMK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEMK-09A-01D	DNA	EFO	SRS629156	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEMK-09A-01D A33306 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33306	SRX575213	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEMK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATEMK-09A-01D A33306 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33306_1_lane_dupsFlagged.bam	SRR1346460	@dbgap@:reads/SRP012000/SRS629156/SRX575213/SRR1346460/SRR1346460.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATEMK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATEMK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATEMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEMK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEMK-09A-01D	DNA	EFO	SRS629156	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEMK-09A-01D A33306 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33306	SRX575213	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEMK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATEMK-09A-01D A33306 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33306_1_lane_dupsFlagged.bam	SRR1346460	@dbgap@:reads/SRP012000/SRS629156/SRX575213/SRR1346460/SRR1346460.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEMK-09A-01D_TARGET-20-PATEMK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATEMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEMK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEMK-09A-01D	DNA	EFO	SRS629156	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEMK-09A-01D A33306 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33306	SRX575213	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEMK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATEMK-09A-01D A33306 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33306_1_lane_dupsFlagged.bam	SRR1346460	@dbgap@:reads/SRP012000/SRS629156/SRX575213/SRR1346460/SRR1346460.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEMK-09A-01D_TARGET-20-PATEMK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATEMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEMK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEMK-14A-01D	DNA	EFO	SRS635903	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEMK-14A-01D A42536 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42536	SRX593863	"Specific Capture analysis of normal sample TARGET-20-PATEMK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATEMK-14A-01D A42536 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42536_1_lane_dupsFlagged.bam	SRR1386351	@dbgap@:reads/SRP012000/SRS635903/SRX593863/SRR1386351/SRR1386351.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATEMK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATEMK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATEMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEMK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEMK-14A-01D	DNA	EFO	SRS635903	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEMK-14A-01D A42536 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42536	SRX593863	"Specific Capture analysis of normal sample TARGET-20-PATEMK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATEMK-14A-01D A42536 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42536_1_lane_dupsFlagged.bam	SRR1386351	@dbgap@:reads/SRP012000/SRS635903/SRX593863/SRR1386351/SRR1386351.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEMK-09A-01D_TARGET-20-PATEMK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATEMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEMK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEMK-14A-01D	DNA	EFO	SRS635903	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEMK-14A-01D A42536 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42536	SRX593863	"Specific Capture analysis of normal sample TARGET-20-PATEMK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATEMK-14A-01D A42536 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42536_1_lane_dupsFlagged.bam	SRR1386351	@dbgap@:reads/SRP012000/SRS635903/SRX593863/SRR1386351/SRR1386351.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEMK-09A-01D_TARGET-20-PATEMK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATEMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEMV-09A-01D	DNA	EFO	SRS633909	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEMV-09A-01D A41487 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41487	SRX588514	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEMV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATEMV-09A-01D A41487 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41487_1_lane_dupsFlagged.bam	SRR1374885	@dbgap@:reads/SRP012000/SRS633909/SRX588514/SRR1374885/SRR1374885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATEMV-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATEMV-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATEMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEMV-09A-01D	DNA	EFO	SRS633909	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEMV-09A-01D A41487 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41487	SRX588514	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEMV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATEMV-09A-01D A41487 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41487_1_lane_dupsFlagged.bam	SRR1374885	@dbgap@:reads/SRP012000/SRS633909/SRX588514/SRR1374885/SRR1374885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEMV-09A-01D_TARGET-20-PATEMV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATEMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEMV-09A-01D	DNA	EFO	SRS633909	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEMV-09A-01D A41487 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41487	SRX588514	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEMV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATEMV-09A-01D A41487 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41487_1_lane_dupsFlagged.bam	SRR1374885	@dbgap@:reads/SRP012000/SRS633909/SRX588514/SRR1374885/SRR1374885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEMV-09A-01D_TARGET-20-PATEMV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATEMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEMV-14A-01D	DNA	EFO	SRS635760	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEMV-14A-01D A42318 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42318	SRX593595	"Specific Capture analysis of normal sample TARGET-20-PATEMV-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATEMV-14A-01D A42318 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42318_1_lane_dupsFlagged.bam	SRR1386037	@dbgap@:reads/SRP012000/SRS635760/SRX593595/SRR1386037/SRR1386037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATEMV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATEMV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATEMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEMV-14A-01D	DNA	EFO	SRS635760	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEMV-14A-01D A42318 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42318	SRX593595	"Specific Capture analysis of normal sample TARGET-20-PATEMV-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATEMV-14A-01D A42318 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42318_1_lane_dupsFlagged.bam	SRR1386037	@dbgap@:reads/SRP012000/SRS635760/SRX593595/SRR1386037/SRR1386037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEMV-09A-01D_TARGET-20-PATEMV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATEMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEMV-14A-01D	DNA	EFO	SRS635760	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEMV-14A-01D A42318 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42318	SRX593595	"Specific Capture analysis of normal sample TARGET-20-PATEMV-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATEMV-14A-01D A42318 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42318_1_lane_dupsFlagged.bam	SRR1386037	@dbgap@:reads/SRP012000/SRS635760/SRX593595/SRR1386037/SRR1386037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEMV-09A-01D_TARGET-20-PATEMV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATENX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATENX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATENX-09A-01D	DNA	EFO	SRS629148	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATENX-09A-01D A33303 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33303	SRX575204	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATENX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATENX-09A-01D A33303 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33303_1_lane_dupsFlagged.bam	SRR1346480	@dbgap@:reads/SRP012000/SRS629148/SRX575204/SRR1346480/SRR1346480.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATENX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATENX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATENX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATENX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATENX-09A-01D	DNA	EFO	SRS629148	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATENX-09A-01D A33303 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33303	SRX575204	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATENX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATENX-09A-01D A33303 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33303_1_lane_dupsFlagged.bam	SRR1346480	@dbgap@:reads/SRP012000/SRS629148/SRX575204/SRR1346480/SRR1346480.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATENX-09A-01D_TARGET-20-PATENX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATENX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATENX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATENX-09A-01D	DNA	EFO	SRS629148	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATENX-09A-01D A33303 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33303	SRX575204	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATENX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATENX-09A-01D A33303 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33303_1_lane_dupsFlagged.bam	SRR1346480	@dbgap@:reads/SRP012000/SRS629148/SRX575204/SRR1346480/SRR1346480.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATENX-09A-01D_TARGET-20-PATENX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATENX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATENX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATENX-14A-01D	DNA	EFO	SRS636031	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATENX-14A-01D A42586 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42586	SRX594010	"Specific Capture analysis of normal sample TARGET-20-PATENX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATENX-14A-01D A42586 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42586_1_lane_dupsFlagged.bam	SRR1386418	@dbgap@:reads/SRP012000/SRS636031/SRX594010/SRR1386418/SRR1386418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATENX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATENX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATENX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATENX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATENX-14A-01D	DNA	EFO	SRS636031	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATENX-14A-01D A42586 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42586	SRX594010	"Specific Capture analysis of normal sample TARGET-20-PATENX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATENX-14A-01D A42586 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42586_1_lane_dupsFlagged.bam	SRR1386418	@dbgap@:reads/SRP012000/SRS636031/SRX594010/SRR1386418/SRR1386418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATENX-09A-01D_TARGET-20-PATENX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATENX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATENX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATENX-14A-01D	DNA	EFO	SRS636031	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATENX-14A-01D A42586 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42586	SRX594010	"Specific Capture analysis of normal sample TARGET-20-PATENX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATENX-14A-01D A42586 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42586_1_lane_dupsFlagged.bam	SRR1386418	@dbgap@:reads/SRP012000/SRS636031/SRX594010/SRR1386418/SRR1386418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATENX-09A-01D_TARGET-20-PATENX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATESK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATESK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATESK-09A-01D	DNA	EFO	SRS635612	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATESK-09A-01D A41914 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41914	SRX593431	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATESK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATESK-09A-01D A41914 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41914_1_lane_dupsFlagged.bam	SRR1385881	@dbgap@:reads/SRP012000/SRS635612/SRX593431/SRR1385881/SRR1385881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATESK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATESK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATESX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATESX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATESX-09A-01D	DNA	EFO	SRS633965	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATESX-09A-01D A41489 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41489	SRX588570	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATESX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATESX-09A-01D A41489 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41489_1_lane_dupsFlagged.bam	SRR1374907	@dbgap@:reads/SRP012000/SRS633965/SRX588570/SRR1374907/SRR1374907.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATESX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATESX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATETC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATETC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATETC-09A-01D	DNA	EFO	SRS635448	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATETC-09A-01D A41709 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41709	SRX593170	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATETC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATETC-09A-01D A41709 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41709_1_lane_dupsFlagged.bam	SRR1385633	@dbgap@:reads/SRP012000/SRS635448/SRX593170/SRR1385633/SRR1385633.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATETC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATETC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATEUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEUF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEUF-03A-01D	DNA	EFO	SRS633946	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEUF-03A-01D A41488 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41488	SRX588552	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEUF-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATEUF-03A-01D A41488 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41488_1_lane_dupsFlagged.bam	SRR1374882	@dbgap@:reads/SRP012000/SRS633946/SRX588552/SRR1374882/SRR1374882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATEUF-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATEUF-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATEWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEWX-09A-01D	DNA	EFO	SRS629141	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEWX-09A-01D A33310 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33310	SRX575197	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEWX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATEWX-09A-01D A33310 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33310_1_lane_dupsFlagged.bam	SRR1346498	@dbgap@:reads/SRP012000/SRS629141/SRX575197/SRR1346498/SRR1346498.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATEWX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATEWX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATEWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEWX-09A-01D	DNA	EFO	SRS629141	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEWX-09A-01D A33310 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33310	SRX575197	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEWX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATEWX-09A-01D A33310 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33310_1_lane_dupsFlagged.bam	SRR1346498	@dbgap@:reads/SRP012000/SRS629141/SRX575197/SRR1346498/SRR1346498.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEWX-09A-01D_TARGET-20-PATEWX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATEWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEWX-09A-01D	DNA	EFO	SRS629141	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEWX-09A-01D A33310 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33310	SRX575197	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATEWX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATEWX-09A-01D A33310 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33310_1_lane_dupsFlagged.bam	SRR1346498	@dbgap@:reads/SRP012000/SRS629141/SRX575197/SRR1346498/SRR1346498.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEWX-09A-01D_TARGET-20-PATEWX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATEWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEWX-14A-01D	DNA	EFO	SRS635909	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEWX-14A-01D A42530 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42530	SRX593869	"Specific Capture analysis of normal sample TARGET-20-PATEWX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATEWX-14A-01D A42530 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42530_1_lane_dupsFlagged.bam	SRR1386353	@dbgap@:reads/SRP012000/SRS635909/SRX593869/SRR1386353/SRR1386353.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATEWX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATEWX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATEWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEWX-14A-01D	DNA	EFO	SRS635909	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEWX-14A-01D A42530 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42530	SRX593869	"Specific Capture analysis of normal sample TARGET-20-PATEWX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATEWX-14A-01D A42530 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42530_1_lane_dupsFlagged.bam	SRR1386353	@dbgap@:reads/SRP012000/SRS635909/SRX593869/SRR1386353/SRR1386353.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEWX-09A-01D_TARGET-20-PATEWX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATEWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATEWX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATEWX-14A-01D	DNA	EFO	SRS635909	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATEWX-14A-01D A42530 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42530	SRX593869	"Specific Capture analysis of normal sample TARGET-20-PATEWX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATEWX-14A-01D A42530 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42530_1_lane_dupsFlagged.bam	SRR1386353	@dbgap@:reads/SRP012000/SRS635909/SRX593869/SRR1386353/SRR1386353.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATEWX-09A-01D_TARGET-20-PATEWX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATFBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFBW-09A-01D	DNA	EFO	SRS629163	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFBW-09A-01D A33347 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33347	SRX575219	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFBW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATFBW-09A-01D A33347 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33347_1_lane_dupsFlagged.bam	SRR1346449	@dbgap@:reads/SRP012000/SRS629163/SRX575219/SRR1346449/SRR1346449.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATFBW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATFBW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATFCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFCZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFCZ-09A-01D	DNA	EFO	SRS629171	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFCZ-09A-01D A33346 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33346	SRX575228	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFCZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATFCZ-09A-01D A33346 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33346_1_lane_dupsFlagged.bam	SRR1346431	@dbgap@:reads/SRP012000/SRS629171/SRX575228/SRR1346431/SRR1346431.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATFCZ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATFCZ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATFCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFCZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFCZ-09A-01D	DNA	EFO	SRS629171	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFCZ-09A-01D A33346 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33346	SRX575228	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFCZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATFCZ-09A-01D A33346 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33346_1_lane_dupsFlagged.bam	SRR1346431	@dbgap@:reads/SRP012000/SRS629171/SRX575228/SRR1346431/SRR1346431.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFCZ-09A-01D_TARGET-20-PATFCZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATFCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFCZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFCZ-09A-01D	DNA	EFO	SRS629171	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFCZ-09A-01D A33346 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33346	SRX575228	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFCZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATFCZ-09A-01D A33346 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33346_1_lane_dupsFlagged.bam	SRR1346431	@dbgap@:reads/SRP012000/SRS629171/SRX575228/SRR1346431/SRR1346431.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFCZ-09A-01D_TARGET-20-PATFCZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATFCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFCZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFCZ-14A-01D	DNA	EFO	SRS635976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFCZ-14A-01D A42619 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42619	SRX593938	"Specific Capture analysis of normal sample TARGET-20-PATFCZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATFCZ-14A-01D A42619 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42619_1_lane_dupsFlagged.bam	SRR1386460	@dbgap@:reads/SRP012000/SRS635976/SRX593938/SRR1386460/SRR1386460.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATFCZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATFCZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATFCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFCZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFCZ-14A-01D	DNA	EFO	SRS635976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFCZ-14A-01D A42619 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42619	SRX593938	"Specific Capture analysis of normal sample TARGET-20-PATFCZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATFCZ-14A-01D A42619 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42619_1_lane_dupsFlagged.bam	SRR1386460	@dbgap@:reads/SRP012000/SRS635976/SRX593938/SRR1386460/SRR1386460.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFCZ-09A-01D_TARGET-20-PATFCZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATFCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFCZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFCZ-14A-01D	DNA	EFO	SRS635976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFCZ-14A-01D A42619 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42619	SRX593938	"Specific Capture analysis of normal sample TARGET-20-PATFCZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATFCZ-14A-01D A42619 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42619_1_lane_dupsFlagged.bam	SRR1386460	@dbgap@:reads/SRP012000/SRS635976/SRX593938/SRR1386460/SRR1386460.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFCZ-09A-01D_TARGET-20-PATFCZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATFDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATFDF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFDF-09A-01D	DNA	EFO	SRS629109	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFDF-09A-01D A33348 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33348	SRX575164	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFDF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATFDF-09A-01D A33348 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33348_1_lane_dupsFlagged.bam	SRR1346503	@dbgap@:reads/SRP012000/SRS629109/SRX575164/SRR1346503/SRR1346503.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATFDF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATFDF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATFDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATFDF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFDF-09A-01D	DNA	EFO	SRS629109	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFDF-09A-01D A33348 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33348	SRX575164	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFDF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATFDF-09A-01D A33348 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33348_1_lane_dupsFlagged.bam	SRR1346503	@dbgap@:reads/SRP012000/SRS629109/SRX575164/SRR1346503/SRR1346503.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFDF-09A-01D_TARGET-20-PATFDF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATFDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATFDF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFDF-09A-01D	DNA	EFO	SRS629109	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFDF-09A-01D A33348 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33348	SRX575164	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFDF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATFDF-09A-01D A33348 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33348_1_lane_dupsFlagged.bam	SRR1346503	@dbgap@:reads/SRP012000/SRS629109/SRX575164/SRR1346503/SRR1346503.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFDF-09A-01D_TARGET-20-PATFDF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATFDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATFDF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFDF-14A-01D	DNA	EFO	SRS637483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFDF-14A-01D A42930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42930	SRX597913	"Specific Capture analysis of normal sample TARGET-20-PATFDF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATFDF-14A-01D A42930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42930_1_lane_dupsFlagged.bam	SRR1395218	@dbgap@:reads/SRP012000/SRS637483/SRX597913/SRR1395218/SRR1395218.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATFDF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATFDF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATFDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATFDF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFDF-14A-01D	DNA	EFO	SRS637483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFDF-14A-01D A42930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42930	SRX597913	"Specific Capture analysis of normal sample TARGET-20-PATFDF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATFDF-14A-01D A42930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42930_1_lane_dupsFlagged.bam	SRR1395218	@dbgap@:reads/SRP012000/SRS637483/SRX597913/SRR1395218/SRR1395218.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFDF-09A-01D_TARGET-20-PATFDF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATFDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATFDF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFDF-14A-01D	DNA	EFO	SRS637483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFDF-14A-01D A42930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42930	SRX597913	"Specific Capture analysis of normal sample TARGET-20-PATFDF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATFDF-14A-01D A42930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42930_1_lane_dupsFlagged.bam	SRR1395218	@dbgap@:reads/SRP012000/SRS637483/SRX597913/SRR1395218/SRR1395218.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFDF-09A-01D_TARGET-20-PATFDF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATFDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATFDF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFDF-14A-01D	DNA	EFO	SRS637483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFDF-14A-01D A42930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42930	SRX597913	"Specific Capture analysis of normal sample TARGET-20-PATFDF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATFDF-14A-01D A42930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42930_1_lane_dupsFlagged.bam	SRR1395218	@dbgap@:reads/SRP012000/SRS637483/SRX597913/SRR1395218/SRR1395218.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFDF-40A-01D_TARGET-20-PATFDF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATFDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATFDF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFDF-14A-01D	DNA	EFO	SRS637483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFDF-14A-01D A42930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42930	SRX597913	"Specific Capture analysis of normal sample TARGET-20-PATFDF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATFDF-14A-01D A42930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42930_1_lane_dupsFlagged.bam	SRR1395218	@dbgap@:reads/SRP012000/SRS637483/SRX597913/SRR1395218/SRR1395218.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFDF-40A-01D_TARGET-20-PATFDF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATFDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATFDF-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFDF-40A-01D	DNA	EFO	SRS637333	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFDF-40A-01D A42230 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42230	SRX597717	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFDF-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATFDF-40A-01D A42230 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42230_1_lane_dupsFlagged.bam	SRR1394955	@dbgap@:reads/SRP012000/SRS637333/SRX597717/SRR1394955/SRR1394955.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATFDF-40A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATFDF-40A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATFDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATFDF-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFDF-40A-01D	DNA	EFO	SRS637333	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFDF-40A-01D A42230 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42230	SRX597717	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFDF-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATFDF-40A-01D A42230 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42230_1_lane_dupsFlagged.bam	SRR1394955	@dbgap@:reads/SRP012000/SRS637333/SRX597717/SRR1394955/SRR1394955.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFDF-40A-01D_TARGET-20-PATFDF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATFDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATFDF-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFDF-40A-01D	DNA	EFO	SRS637333	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFDF-40A-01D A42230 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42230	SRX597717	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFDF-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATFDF-40A-01D A42230 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42230_1_lane_dupsFlagged.bam	SRR1394955	@dbgap@:reads/SRP012000/SRS637333/SRX597717/SRR1394955/SRR1394955.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFDF-40A-01D_TARGET-20-PATFDF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFGK-09A-01D	DNA	EFO	SRS633971	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFGK-09A-01D A41490 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41490	SRX588576	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFGK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATFGK-09A-01D A41490 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41490_1_lane_dupsFlagged.bam	SRR1374849	@dbgap@:reads/SRP012000/SRS633971/SRX588576/SRR1374849/SRR1374849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATFGK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATFGK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATFGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFGL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFGL-03A-01D	DNA	EFO	SRS629149	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFGL-03A-01D A33311 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33311	SRX575205	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFGL-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATFGL-03A-01D A33311 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33311_1_lane_dupsFlagged.bam	SRR1346453	@dbgap@:reads/SRP012000/SRS629149/SRX575205/SRR1346453/SRR1346453.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATFGL-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATFGL-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATFGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFGL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFGL-03A-01D	DNA	EFO	SRS629149	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFGL-03A-01D A33311 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33311	SRX575205	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFGL-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATFGL-03A-01D A33311 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33311_1_lane_dupsFlagged.bam	SRR1346453	@dbgap@:reads/SRP012000/SRS629149/SRX575205/SRR1346453/SRR1346453.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFGL-03A-01D_TARGET-20-PATFGL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATFGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFGL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFGL-03A-01D	DNA	EFO	SRS629149	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFGL-03A-01D A33311 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33311	SRX575205	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFGL-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATFGL-03A-01D A33311 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33311_1_lane_dupsFlagged.bam	SRR1346453	@dbgap@:reads/SRP012000/SRS629149/SRX575205/SRR1346453/SRR1346453.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFGL-03A-01D_TARGET-20-PATFGL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATFGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFGL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFGL-14A-01D	DNA	EFO	SRS635987	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFGL-14A-01D A42632 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42632	SRX593952	"Specific Capture analysis of normal sample TARGET-20-PATFGL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATFGL-14A-01D A42632 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42632_1_lane_dupsFlagged.bam	SRR1386469	@dbgap@:reads/SRP012000/SRS635987/SRX593952/SRR1386469/SRR1386469.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATFGL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATFGL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATFGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFGL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFGL-14A-01D	DNA	EFO	SRS635987	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFGL-14A-01D A42632 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42632	SRX593952	"Specific Capture analysis of normal sample TARGET-20-PATFGL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATFGL-14A-01D A42632 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42632_1_lane_dupsFlagged.bam	SRR1386469	@dbgap@:reads/SRP012000/SRS635987/SRX593952/SRR1386469/SRR1386469.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFGL-03A-01D_TARGET-20-PATFGL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATFGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFGL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFGL-14A-01D	DNA	EFO	SRS635987	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFGL-14A-01D A42632 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42632	SRX593952	"Specific Capture analysis of normal sample TARGET-20-PATFGL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATFGL-14A-01D A42632 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42632_1_lane_dupsFlagged.bam	SRR1386469	@dbgap@:reads/SRP012000/SRS635987/SRX593952/SRR1386469/SRR1386469.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFGL-03A-01D_TARGET-20-PATFGL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATFMR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFMR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFMR-09A-01D	DNA	EFO	SRS629147	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFMR-09A-01D A33312 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33312	SRX575202	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFMR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATFMR-09A-01D A33312 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33312_1_lane_dupsFlagged.bam	SRR1346486	@dbgap@:reads/SRP012000/SRS629147/SRX575202/SRR1346486/SRR1346486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATFMR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATFMR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATFMR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFMR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFMR-09A-01D	DNA	EFO	SRS629147	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFMR-09A-01D A33312 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33312	SRX575202	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFMR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATFMR-09A-01D A33312 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33312_1_lane_dupsFlagged.bam	SRR1346486	@dbgap@:reads/SRP012000/SRS629147/SRX575202/SRR1346486/SRR1346486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFMR-09A-01D_TARGET-20-PATFMR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATFMR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFMR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFMR-09A-01D	DNA	EFO	SRS629147	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFMR-09A-01D A33312 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33312	SRX575202	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFMR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATFMR-09A-01D A33312 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33312_1_lane_dupsFlagged.bam	SRR1346486	@dbgap@:reads/SRP012000/SRS629147/SRX575202/SRR1346486/SRR1346486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFMR-09A-01D_TARGET-20-PATFMR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATFMR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFMR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFMR-14A-01D	DNA	EFO	SRS635874	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFMR-14A-01D A42538 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42538	SRX593833	"Specific Capture analysis of normal sample TARGET-20-PATFMR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATFMR-14A-01D A42538 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42538_1_lane_dupsFlagged.bam	SRR1386336	@dbgap@:reads/SRP012000/SRS635874/SRX593833/SRR1386336/SRR1386336.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATFMR-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATFMR-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATFMR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFMR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFMR-14A-01D	DNA	EFO	SRS635874	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFMR-14A-01D A42538 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42538	SRX593833	"Specific Capture analysis of normal sample TARGET-20-PATFMR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATFMR-14A-01D A42538 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42538_1_lane_dupsFlagged.bam	SRR1386336	@dbgap@:reads/SRP012000/SRS635874/SRX593833/SRR1386336/SRR1386336.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFMR-09A-01D_TARGET-20-PATFMR-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATFMR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFMR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFMR-14A-01D	DNA	EFO	SRS635874	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFMR-14A-01D A42538 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42538	SRX593833	"Specific Capture analysis of normal sample TARGET-20-PATFMR-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATFMR-14A-01D A42538 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42538_1_lane_dupsFlagged.bam	SRR1386336	@dbgap@:reads/SRP012000/SRS635874/SRX593833/SRR1386336/SRR1386336.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFMR-09A-01D_TARGET-20-PATFMR-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATFNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFNK-09A-01D	DNA	EFO	SRS633898	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFNK-09A-01D A41491 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41491	SRX588502	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFNK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATFNK-09A-01D A41491 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41491_1_lane_dupsFlagged.bam	SRR1374880	@dbgap@:reads/SRP012000/SRS633898/SRX588502/SRR1374880/SRR1374880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATFNK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATFNK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATFNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFNK-09A-01D	DNA	EFO	SRS633898	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFNK-09A-01D A41491 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41491	SRX588502	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFNK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATFNK-09A-01D A41491 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41491_1_lane_dupsFlagged.bam	SRR1374880	@dbgap@:reads/SRP012000/SRS633898/SRX588502/SRR1374880/SRR1374880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFNK-09A-01D_TARGET-20-PATFNK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATFNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFNK-09A-01D	DNA	EFO	SRS633898	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFNK-09A-01D A41491 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41491	SRX588502	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFNK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATFNK-09A-01D A41491 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41491_1_lane_dupsFlagged.bam	SRR1374880	@dbgap@:reads/SRP012000/SRS633898/SRX588502/SRR1374880/SRR1374880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFNK-09A-01D_TARGET-20-PATFNK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATFNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFNK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFNK-14A-01D	DNA	EFO	SRS636009	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFNK-14A-01D A42620 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42620	SRX593983	"Specific Capture analysis of normal sample TARGET-20-PATFNK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATFNK-14A-01D A42620 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42620_1_lane_dupsFlagged.bam	SRR1386422	@dbgap@:reads/SRP012000/SRS636009/SRX593983/SRR1386422/SRR1386422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATFNK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATFNK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATFNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFNK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFNK-14A-01D	DNA	EFO	SRS636009	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFNK-14A-01D A42620 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42620	SRX593983	"Specific Capture analysis of normal sample TARGET-20-PATFNK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATFNK-14A-01D A42620 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42620_1_lane_dupsFlagged.bam	SRR1386422	@dbgap@:reads/SRP012000/SRS636009/SRX593983/SRR1386422/SRR1386422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFNK-09A-01D_TARGET-20-PATFNK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATFNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFNK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFNK-14A-01D	DNA	EFO	SRS636009	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFNK-14A-01D A42620 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42620	SRX593983	"Specific Capture analysis of normal sample TARGET-20-PATFNK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATFNK-14A-01D A42620 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42620_1_lane_dupsFlagged.bam	SRR1386422	@dbgap@:reads/SRP012000/SRS636009/SRX593983/SRR1386422/SRR1386422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFNK-09A-01D_TARGET-20-PATFNK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATFRY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFRY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFRY-09A-01D	DNA	EFO	SRS633942	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFRY-09A-01D A41492 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41492	SRX588548	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFRY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATFRY-09A-01D A41492 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41492_1_lane_dupsFlagged.bam	SRR1374884	@dbgap@:reads/SRP012000/SRS633942/SRX588548/SRR1374884/SRR1374884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATFRY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATFRY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATFRY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFRY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFRY-09A-01D	DNA	EFO	SRS633942	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFRY-09A-01D A41492 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41492	SRX588548	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFRY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATFRY-09A-01D A41492 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41492_1_lane_dupsFlagged.bam	SRR1374884	@dbgap@:reads/SRP012000/SRS633942/SRX588548/SRR1374884/SRR1374884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFRY-09A-01D_TARGET-20-PATFRY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATFRY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFRY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFRY-09A-01D	DNA	EFO	SRS633942	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFRY-09A-01D A41492 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41492	SRX588548	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFRY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATFRY-09A-01D A41492 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41492_1_lane_dupsFlagged.bam	SRR1374884	@dbgap@:reads/SRP012000/SRS633942/SRX588548/SRR1374884/SRR1374884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFRY-09A-01D_TARGET-20-PATFRY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATFRY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFRY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFRY-14A-01D	DNA	EFO	SRS635744	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFRY-14A-01D A42351 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42351	SRX593577	"Specific Capture analysis of normal sample TARGET-20-PATFRY-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATFRY-14A-01D A42351 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42351_1_lane_dupsFlagged.bam	SRR1386067	@dbgap@:reads/SRP012000/SRS635744/SRX593577/SRR1386067/SRR1386067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATFRY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATFRY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATFRY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFRY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFRY-14A-01D	DNA	EFO	SRS635744	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFRY-14A-01D A42351 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42351	SRX593577	"Specific Capture analysis of normal sample TARGET-20-PATFRY-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATFRY-14A-01D A42351 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42351_1_lane_dupsFlagged.bam	SRR1386067	@dbgap@:reads/SRP012000/SRS635744/SRX593577/SRR1386067/SRR1386067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFRY-09A-01D_TARGET-20-PATFRY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATFRY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFRY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFRY-14A-01D	DNA	EFO	SRS635744	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFRY-14A-01D A42351 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42351	SRX593577	"Specific Capture analysis of normal sample TARGET-20-PATFRY-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATFRY-14A-01D A42351 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42351_1_lane_dupsFlagged.bam	SRR1386067	@dbgap@:reads/SRP012000/SRS635744/SRX593577/SRR1386067/SRR1386067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATFRY-09A-01D_TARGET-20-PATFRY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATFYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFYN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFYN-09A-01D	DNA	EFO	SRS629174	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFYN-09A-01D A33313 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33313	SRX575230	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFYN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATFYN-09A-01D A33313 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33313_1_lane_dupsFlagged.bam	SRR1346440	@dbgap@:reads/SRP012000/SRS629174/SRX575230/SRR1346440/SRR1346440.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATFYN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATFYN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATFZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATFZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFZR-09A-01D	DNA	EFO	SRS629181	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFZR-09A-01D A33315 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33315	SRX575237	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATFZR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATFZR-09A-01D A33315 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33315_1_lane_dupsFlagged.bam	SRR1346454	@dbgap@:reads/SRP012000/SRS629181/SRX575237/SRR1346454/SRR1346454.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATFZR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATFZR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATGAN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGAN-03A-01D	DNA	EFO	SRS628919	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGAN-03A-01D A32310 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32310	SRX574975	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGAN-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATGAN-03A-01D A32310 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32310_1_lane_dupsFlagged.bam	SRR1346143	@dbgap@:reads/SRP012000/SRS628919/SRX574975/SRR1346143/SRR1346143.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGAN-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGAN-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATGAN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGAN-04A-01D	DNA	EFO	SRS637519	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGAN-04A-01D A42749 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42749	SRX597956	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGAN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATGAN-04A-01D A42749 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42749_1_lane_dupsFlagged.bam	SRR1395228	@dbgap@:reads/SRP012000/SRS637519/SRX597956/SRR1395228/SRR1395228.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGAN-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGAN-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGAY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGAY-09A-01D	DNA	EFO	SRS633969	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGAY-09A-01D A41493 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41493	SRX588577	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGAY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATGAY-09A-01D A41493 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41493_1_lane_dupsFlagged.bam	SRR1374857	@dbgap@:reads/SRP012000/SRS633969/SRX588577/SRR1374857/SRR1374857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGAY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGAY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGBX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGBX-09A-01D	DNA	EFO	SRS628953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGBX-09A-01D A32348 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32348	SRX575002	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGBX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATGBX-09A-01D A32348 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32348_1_lane_dupsFlagged.bam	SRR1346206	@dbgap@:reads/SRP012000/SRS628953/SRX575002/SRR1346206/SRR1346206.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGBX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGBX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGBX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGBX-09A-01D	DNA	EFO	SRS628953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGBX-09A-01D A32348 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32348	SRX575002	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGBX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATGBX-09A-01D A32348 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32348_1_lane_dupsFlagged.bam	SRR1346206	@dbgap@:reads/SRP012000/SRS628953/SRX575002/SRR1346206/SRR1346206.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGBX-09A-01D_TARGET-20-PATGBX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGBX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGBX-09A-01D	DNA	EFO	SRS628953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGBX-09A-01D A32348 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32348	SRX575002	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGBX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATGBX-09A-01D A32348 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32348_1_lane_dupsFlagged.bam	SRR1346206	@dbgap@:reads/SRP012000/SRS628953/SRX575002/SRR1346206/SRR1346206.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGBX-09A-01D_TARGET-20-PATGBX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATGBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGBX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGBX-14A-01D	DNA	EFO	SRS635963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGBX-14A-01D A42621 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42621	SRX593925	"Specific Capture analysis of normal sample TARGET-20-PATGBX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATGBX-14A-01D A42621 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42621_1_lane_dupsFlagged.bam	SRR1386459	@dbgap@:reads/SRP012000/SRS635963/SRX593925/SRR1386459/SRR1386459.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGBX-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGBX-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATGBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGBX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGBX-14A-01D	DNA	EFO	SRS635963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGBX-14A-01D A42621 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42621	SRX593925	"Specific Capture analysis of normal sample TARGET-20-PATGBX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATGBX-14A-01D A42621 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42621_1_lane_dupsFlagged.bam	SRR1386459	@dbgap@:reads/SRP012000/SRS635963/SRX593925/SRR1386459/SRR1386459.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGBX-09A-01D_TARGET-20-PATGBX-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGBX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGBX-14A-01D	DNA	EFO	SRS635963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGBX-14A-01D A42621 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42621	SRX593925	"Specific Capture analysis of normal sample TARGET-20-PATGBX-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATGBX-14A-01D A42621 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42621_1_lane_dupsFlagged.bam	SRR1386459	@dbgap@:reads/SRP012000/SRS635963/SRX593925/SRR1386459/SRR1386459.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGBX-09A-01D_TARGET-20-PATGBX-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATGDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGDZ-09A-01D	DNA	EFO	SRS629193	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGDZ-09A-01D A33314 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33314	SRX575249	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGDZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATGDZ-09A-01D A33314 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33314_1_lane_dupsFlagged.bam	SRR1346436	@dbgap@:reads/SRP012000/SRS629193/SRX575249/SRR1346436/SRR1346436.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGDZ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGDZ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGGI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGGI-03A-01D	DNA	EFO	SRS633912	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGGI-03A-01D A41495 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41495	SRX588517	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGGI-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATGGI-03A-01D A41495 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41495_1_lane_dupsFlagged.bam	SRR1374853	@dbgap@:reads/SRP012000/SRS633912/SRX588517/SRR1374853/SRR1374853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGGI-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGGI-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGGI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGGI-03A-01D	DNA	EFO	SRS633912	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGGI-03A-01D A41495 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41495	SRX588517	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGGI-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATGGI-03A-01D A41495 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41495_1_lane_dupsFlagged.bam	SRR1374853	@dbgap@:reads/SRP012000/SRS633912/SRX588517/SRR1374853/SRR1374853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGGI-03A-01D_TARGET-20-PATGGI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGGI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGGI-03A-01D	DNA	EFO	SRS633912	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGGI-03A-01D A41495 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41495	SRX588517	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGGI-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATGGI-03A-01D A41495 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41495_1_lane_dupsFlagged.bam	SRR1374853	@dbgap@:reads/SRP012000/SRS633912/SRX588517/SRR1374853/SRR1374853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGGI-03A-01D_TARGET-20-PATGGI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGGI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGGI-04A-01D	DNA	EFO	SRS637334	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGGI-04A-01D A42256 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42256	SRX597721	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGGI-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATGGI-04A-01D A42256 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42256_1_lane_dupsFlagged.bam	SRR1394976	@dbgap@:reads/SRP012000/SRS637334/SRX597721/SRR1394976/SRR1394976.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGGI-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGGI-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGGI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGGI-04A-01D	DNA	EFO	SRS637334	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGGI-04A-01D A42256 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42256	SRX597721	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGGI-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATGGI-04A-01D A42256 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42256_1_lane_dupsFlagged.bam	SRR1394976	@dbgap@:reads/SRP012000/SRS637334/SRX597721/SRR1394976/SRR1394976.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGGI-04A-01D_TARGET-20-PATGGI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGGI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGGI-04A-01D	DNA	EFO	SRS637334	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGGI-04A-01D A42256 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42256	SRX597721	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGGI-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATGGI-04A-01D A42256 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42256_1_lane_dupsFlagged.bam	SRR1394976	@dbgap@:reads/SRP012000/SRS637334/SRX597721/SRR1394976/SRR1394976.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGGI-04A-01D_TARGET-20-PATGGI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGGI-14A-01D	DNA	EFO	SRS637466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGGI-14A-01D A42935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42935	SRX597885	"Specific Capture analysis of normal sample TARGET-20-PATGGI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATGGI-14A-01D A42935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42935_1_lane_dupsFlagged.bam	SRR1395144	@dbgap@:reads/SRP012000/SRS637466/SRX597885/SRR1395144/SRR1395144.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGGI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGGI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGGI-14A-01D	DNA	EFO	SRS637466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGGI-14A-01D A42935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42935	SRX597885	"Specific Capture analysis of normal sample TARGET-20-PATGGI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATGGI-14A-01D A42935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42935_1_lane_dupsFlagged.bam	SRR1395144	@dbgap@:reads/SRP012000/SRS637466/SRX597885/SRR1395144/SRR1395144.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGGI-03A-01D_TARGET-20-PATGGI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGGI-14A-01D	DNA	EFO	SRS637466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGGI-14A-01D A42935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42935	SRX597885	"Specific Capture analysis of normal sample TARGET-20-PATGGI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATGGI-14A-01D A42935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42935_1_lane_dupsFlagged.bam	SRR1395144	@dbgap@:reads/SRP012000/SRS637466/SRX597885/SRR1395144/SRR1395144.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGGI-03A-01D_TARGET-20-PATGGI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGGI-14A-01D	DNA	EFO	SRS637466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGGI-14A-01D A42935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42935	SRX597885	"Specific Capture analysis of normal sample TARGET-20-PATGGI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATGGI-14A-01D A42935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42935_1_lane_dupsFlagged.bam	SRR1395144	@dbgap@:reads/SRP012000/SRS637466/SRX597885/SRR1395144/SRR1395144.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGGI-04A-01D_TARGET-20-PATGGI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGGI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGGI-14A-01D	DNA	EFO	SRS637466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGGI-14A-01D A42935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42935	SRX597885	"Specific Capture analysis of normal sample TARGET-20-PATGGI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATGGI-14A-01D A42935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42935_1_lane_dupsFlagged.bam	SRR1395144	@dbgap@:reads/SRP012000/SRS637466/SRX597885/SRR1395144/SRR1395144.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGGI-04A-01D_TARGET-20-PATGGI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATGGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGGY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGGY-03A-01D	DNA	EFO	SRS633949	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGGY-03A-01D A41494 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41494	SRX588555	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGGY-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATGGY-03A-01D A41494 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41494_1_lane_dupsFlagged.bam	SRR1374890	@dbgap@:reads/SRP012000/SRS633949/SRX588555/SRR1374890/SRR1374890.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGGY-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGGY-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGHV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGHV-09A-01D	DNA	EFO	SRS635614	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGHV-09A-01D A41915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41915	SRX593433	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGHV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATGHV-09A-01D A41915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41915_1_lane_dupsFlagged.bam	SRR1385897	@dbgap@:reads/SRP012000/SRS635614/SRX593433/SRR1385897/SRR1385897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGHV-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGHV-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGHV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGHV-09A-01D	DNA	EFO	SRS635614	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGHV-09A-01D A41915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41915	SRX593433	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGHV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATGHV-09A-01D A41915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41915_1_lane_dupsFlagged.bam	SRR1385897	@dbgap@:reads/SRP012000/SRS635614/SRX593433/SRR1385897/SRR1385897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGHV-09A-01D_TARGET-20-PATGHV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGHV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGHV-09A-01D	DNA	EFO	SRS635614	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGHV-09A-01D A41915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41915	SRX593433	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGHV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATGHV-09A-01D A41915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41915_1_lane_dupsFlagged.bam	SRR1385897	@dbgap@:reads/SRP012000/SRS635614/SRX593433/SRR1385897/SRR1385897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGHV-09A-01D_TARGET-20-PATGHV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATGHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGHV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGHV-14A-01D	DNA	EFO	SRS637394	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGHV-14A-01D A42836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42836	SRX597800	"Specific Capture analysis of normal sample TARGET-20-PATGHV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATGHV-14A-01D A42836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42836_1_lane_dupsFlagged.bam	SRR1395048	@dbgap@:reads/SRP012000/SRS637394/SRX597800/SRR1395048/SRR1395048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGHV-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGHV-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATGHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGHV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGHV-14A-01D	DNA	EFO	SRS637394	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGHV-14A-01D A42836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42836	SRX597800	"Specific Capture analysis of normal sample TARGET-20-PATGHV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATGHV-14A-01D A42836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42836_1_lane_dupsFlagged.bam	SRR1395048	@dbgap@:reads/SRP012000/SRS637394/SRX597800/SRR1395048/SRR1395048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGHV-09A-01D_TARGET-20-PATGHV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGHV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGHV-14A-01D	DNA	EFO	SRS637394	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGHV-14A-01D A42836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42836	SRX597800	"Specific Capture analysis of normal sample TARGET-20-PATGHV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATGHV-14A-01D A42836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42836_1_lane_dupsFlagged.bam	SRR1395048	@dbgap@:reads/SRP012000/SRS637394/SRX597800/SRR1395048/SRR1395048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGHV-09A-01D_TARGET-20-PATGHV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATGHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGHV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGHV-14A-01D	DNA	EFO	SRS637394	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGHV-14A-01D A42836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42836	SRX597800	"Specific Capture analysis of normal sample TARGET-20-PATGHV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATGHV-14A-01D A42836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42836_1_lane_dupsFlagged.bam	SRR1395048	@dbgap@:reads/SRP012000/SRS637394/SRX597800/SRR1395048/SRR1395048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGHV-40A-01D_TARGET-20-PATGHV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGHV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGHV-14A-01D	DNA	EFO	SRS637394	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGHV-14A-01D A42836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42836	SRX597800	"Specific Capture analysis of normal sample TARGET-20-PATGHV-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATGHV-14A-01D A42836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42836_1_lane_dupsFlagged.bam	SRR1395048	@dbgap@:reads/SRP012000/SRS637394/SRX597800/SRR1395048/SRR1395048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGHV-40A-01D_TARGET-20-PATGHV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATGHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGHV-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGHV-40A-01D	DNA	EFO	SRS637523	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGHV-40A-01D A42725 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42725	SRX597960	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGHV-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATGHV-40A-01D A42725 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42725_1_lane_dupsFlagged.bam	SRR1395249	@dbgap@:reads/SRP012000/SRS637523/SRX597960/SRR1395249/SRR1395249.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGHV-40A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGHV-40A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGHV-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGHV-40A-01D	DNA	EFO	SRS637523	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGHV-40A-01D A42725 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42725	SRX597960	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGHV-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATGHV-40A-01D A42725 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42725_1_lane_dupsFlagged.bam	SRR1395249	@dbgap@:reads/SRP012000/SRS637523/SRX597960/SRR1395249/SRR1395249.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGHV-40A-01D_TARGET-20-PATGHV-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGHV-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGHV-40A-01D	DNA	EFO	SRS637523	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGHV-40A-01D A42725 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42725	SRX597960	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGHV-40A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATGHV-40A-01D A42725 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42725_1_lane_dupsFlagged.bam	SRR1395249	@dbgap@:reads/SRP012000/SRS637523/SRX597960/SRR1395249/SRR1395249.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGHV-40A-01D_TARGET-20-PATGHV-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATGIG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGIG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGIG-03A-01D	DNA	EFO	SRS629121	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGIG-03A-01D A33316 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33316	SRX575178	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGIG-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATGIG-03A-01D A33316 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33316_1_lane_dupsFlagged.bam	SRR1346478	@dbgap@:reads/SRP012000/SRS629121/SRX575178/SRR1346478/SRR1346478.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGIG-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGIG-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGIY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGIY-04A-01D	DNA	EFO	SRS637340	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGIY-04A-01D A42195 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42195	SRX597729	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGIY-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATGIY-04A-01D A42195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42195_1_lane_dupsFlagged.bam	SRR1394983	@dbgap@:reads/SRP012000/SRS637340/SRX597729/SRR1394983/SRR1394983.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGIY-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGIY-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGIY-09A-01D	DNA	EFO	SRS633887	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGIY-09A-01D A41496 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41496	SRX588491	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGIY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATGIY-09A-01D A41496 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41496_1_lane_dupsFlagged.bam	SRR1374861	@dbgap@:reads/SRP012000/SRS633887/SRX588491/SRR1374861/SRR1374861.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGIY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGIY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGRP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGRP-09A-01D	DNA	EFO	SRS629176	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGRP-09A-01D A33317 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33317	SRX575233	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGRP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATGRP-09A-01D A33317 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33317_1_lane_dupsFlagged.bam	SRR1346488	@dbgap@:reads/SRP012000/SRS629176/SRX575233/SRR1346488/SRR1346488.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGRP-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGRP-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGRP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGRP-09A-01D	DNA	EFO	SRS629176	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGRP-09A-01D A33317 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33317	SRX575233	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGRP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATGRP-09A-01D A33317 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33317_1_lane_dupsFlagged.bam	SRR1346488	@dbgap@:reads/SRP012000/SRS629176/SRX575233/SRR1346488/SRR1346488.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGRP-09A-01D_TARGET-20-PATGRP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGRP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGRP-09A-01D	DNA	EFO	SRS629176	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGRP-09A-01D A33317 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33317	SRX575233	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGRP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATGRP-09A-01D A33317 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33317_1_lane_dupsFlagged.bam	SRR1346488	@dbgap@:reads/SRP012000/SRS629176/SRX575233/SRR1346488/SRR1346488.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGRP-09A-01D_TARGET-20-PATGRP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATGRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGRP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGRP-14A-01D	DNA	EFO	SRS635757	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGRP-14A-01D A42329 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42329	SRX593592	"Specific Capture analysis of normal sample TARGET-20-PATGRP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATGRP-14A-01D A42329 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42329_1_lane_dupsFlagged.bam	SRR1386083	@dbgap@:reads/SRP012000/SRS635757/SRX593592/SRR1386083/SRR1386083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGRP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGRP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATGRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGRP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGRP-14A-01D	DNA	EFO	SRS635757	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGRP-14A-01D A42329 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42329	SRX593592	"Specific Capture analysis of normal sample TARGET-20-PATGRP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATGRP-14A-01D A42329 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42329_1_lane_dupsFlagged.bam	SRR1386083	@dbgap@:reads/SRP012000/SRS635757/SRX593592/SRR1386083/SRR1386083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGRP-09A-01D_TARGET-20-PATGRP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGRP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGRP-14A-01D	DNA	EFO	SRS635757	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGRP-14A-01D A42329 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42329	SRX593592	"Specific Capture analysis of normal sample TARGET-20-PATGRP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATGRP-14A-01D A42329 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42329_1_lane_dupsFlagged.bam	SRR1386083	@dbgap@:reads/SRP012000/SRS635757/SRX593592/SRR1386083/SRR1386083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGRP-09A-01D_TARGET-20-PATGRP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGTF-09A-01D	DNA	EFO	SRS629195	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGTF-09A-01D A33319 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33319	SRX575251	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGTF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATGTF-09A-01D A33319 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33319_1_lane_dupsFlagged.bam	SRR1346461	@dbgap@:reads/SRP012000/SRS629195/SRX575251/SRR1346461/SRR1346461.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGTF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGTF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGTF-09A-01D	DNA	EFO	SRS629195	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGTF-09A-01D A33319 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33319	SRX575251	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGTF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATGTF-09A-01D A33319 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33319_1_lane_dupsFlagged.bam	SRR1346461	@dbgap@:reads/SRP012000/SRS629195/SRX575251/SRR1346461/SRR1346461.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGTF-09A-01D_TARGET-20-PATGTF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGTF-09A-01D	DNA	EFO	SRS629195	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGTF-09A-01D A33319 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33319	SRX575251	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGTF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATGTF-09A-01D A33319 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33319_1_lane_dupsFlagged.bam	SRR1346461	@dbgap@:reads/SRP012000/SRS629195/SRX575251/SRR1346461/SRR1346461.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGTF-09A-01D_TARGET-20-PATGTF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGTF-14A-01D	DNA	EFO	SRS635687	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGTF-14A-01D A41674 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41674	SRX593512	"Specific Capture analysis of normal sample TARGET-20-PATGTF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATGTF-14A-01D A41674 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41674_1_lane_dupsFlagged.bam	SRR1385957	@dbgap@:reads/SRP012000/SRS635687/SRX593512/SRR1385957/SRR1385957.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGTF-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGTF-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGTF-14A-01D	DNA	EFO	SRS635687	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGTF-14A-01D A41674 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41674	SRX593512	"Specific Capture analysis of normal sample TARGET-20-PATGTF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATGTF-14A-01D A41674 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41674_1_lane_dupsFlagged.bam	SRR1385957	@dbgap@:reads/SRP012000/SRS635687/SRX593512/SRR1385957/SRR1385957.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGTF-09A-01D_TARGET-20-PATGTF-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGTF-14A-01D	DNA	EFO	SRS635687	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGTF-14A-01D A41674 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41674	SRX593512	"Specific Capture analysis of normal sample TARGET-20-PATGTF-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATGTF-14A-01D A41674 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41674_1_lane_dupsFlagged.bam	SRR1385957	@dbgap@:reads/SRP012000/SRS635687/SRX593512/SRR1385957/SRR1385957.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGTF-09A-01D_TARGET-20-PATGTF-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATGUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGUB-09A-01D	DNA	EFO	SRS629116	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGUB-09A-01D A33318 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33318	SRX575172	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGUB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATGUB-09A-01D A33318 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33318_1_lane_dupsFlagged.bam	SRR1346474	@dbgap@:reads/SRP012000/SRS629116/SRX575172/SRR1346474/SRR1346474.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGUB-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGUB-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGXE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGXE-04A-01D	DNA	EFO	SRS637332	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGXE-04A-01D A42196 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42196	SRX597716	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGXE-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATGXE-04A-01D A42196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42196_1_lane_dupsFlagged.bam	SRR1394962	@dbgap@:reads/SRP012000/SRS637332/SRX597716/SRR1394962/SRR1394962.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGXE-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGXE-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGXE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGXE-04A-01D	DNA	EFO	SRS637332	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGXE-04A-01D A42196 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42196	SRX597716	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGXE-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATGXE-04A-01D A42196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42196_1_lane_dupsFlagged.bam	SRR1394962	@dbgap@:reads/SRP012000/SRS637332/SRX597716/SRR1394962/SRR1394962.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGXE-04A-01D_TARGET-20-PATGXE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGXE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGXE-04A-01D	DNA	EFO	SRS637332	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGXE-04A-01D A42196 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42196	SRX597716	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGXE-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATGXE-04A-01D A42196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42196_1_lane_dupsFlagged.bam	SRR1394962	@dbgap@:reads/SRP012000/SRS637332/SRX597716/SRR1394962/SRR1394962.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGXE-04A-01D_TARGET-20-PATGXE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATGXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGXE-09A-01D	DNA	EFO	SRS635512	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGXE-09A-01D A41719 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41719	SRX593233	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGXE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PATGXE-09A-01D A41719 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41719_1_lane_dupsFlagged.bam	SRR1385581	@dbgap@:reads/SRP012000/SRS635512/SRX593233/SRR1385581/SRR1385581.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGXE-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGXE-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGXE-09A-01D	DNA	EFO	SRS635512	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGXE-09A-01D A41719 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41719	SRX593233	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGXE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PATGXE-09A-01D A41719 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41719_1_lane_dupsFlagged.bam	SRR1385581	@dbgap@:reads/SRP012000/SRS635512/SRX593233/SRR1385581/SRR1385581.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGXE-09A-01D_TARGET-20-PATGXE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGXE-09A-01D	DNA	EFO	SRS635512	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGXE-09A-01D A41719 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41719	SRX593233	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGXE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PATGXE-09A-01D A41719 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41719_1_lane_dupsFlagged.bam	SRR1385581	@dbgap@:reads/SRP012000/SRS635512/SRX593233/SRR1385581/SRR1385581.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGXE-09A-01D_TARGET-20-PATGXE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATGXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGXE-14A-01D	DNA	EFO	SRS635725	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGXE-14A-01D A42353 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42353	SRX593556	"Specific Capture analysis of normal sample TARGET-20-PATGXE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATGXE-14A-01D A42353 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42353_1_lane_dupsFlagged.bam	SRR1386031	@dbgap@:reads/SRP012000/SRS635725/SRX593556/SRR1386031/SRR1386031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGXE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGXE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATGXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGXE-14A-01D	DNA	EFO	SRS635725	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGXE-14A-01D A42353 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42353	SRX593556	"Specific Capture analysis of normal sample TARGET-20-PATGXE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATGXE-14A-01D A42353 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42353_1_lane_dupsFlagged.bam	SRR1386031	@dbgap@:reads/SRP012000/SRS635725/SRX593556/SRR1386031/SRR1386031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGXE-04A-01D_TARGET-20-PATGXE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGXE-14A-01D	DNA	EFO	SRS635725	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGXE-14A-01D A42353 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42353	SRX593556	"Specific Capture analysis of normal sample TARGET-20-PATGXE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATGXE-14A-01D A42353 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42353_1_lane_dupsFlagged.bam	SRR1386031	@dbgap@:reads/SRP012000/SRS635725/SRX593556/SRR1386031/SRR1386031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGXE-04A-01D_TARGET-20-PATGXE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATGXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGXE-14A-01D	DNA	EFO	SRS635725	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGXE-14A-01D A42353 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42353	SRX593556	"Specific Capture analysis of normal sample TARGET-20-PATGXE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATGXE-14A-01D A42353 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42353_1_lane_dupsFlagged.bam	SRR1386031	@dbgap@:reads/SRP012000/SRS635725/SRX593556/SRR1386031/SRR1386031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGXE-09A-01D_TARGET-20-PATGXE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGXE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGXE-14A-01D	DNA	EFO	SRS635725	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGXE-14A-01D A42353 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42353	SRX593556	"Specific Capture analysis of normal sample TARGET-20-PATGXE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATGXE-14A-01D A42353 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42353_1_lane_dupsFlagged.bam	SRR1386031	@dbgap@:reads/SRP012000/SRS635725/SRX593556/SRR1386031/SRR1386031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGXE-09A-01D_TARGET-20-PATGXE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATGXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGXW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGXW-09A-01D	DNA	EFO	SRS633899	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGXW-09A-01D A41497 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41497	SRX588503	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGXW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATGXW-09A-01D A41497 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41497_1_lane_dupsFlagged.bam	SRR1374902	@dbgap@:reads/SRP012000/SRS633899/SRX588503/SRR1374902/SRR1374902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGXW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGXW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATGXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGXW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGXW-09A-01D	DNA	EFO	SRS633899	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGXW-09A-01D A41497 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41497	SRX588503	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGXW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATGXW-09A-01D A41497 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41497_1_lane_dupsFlagged.bam	SRR1374902	@dbgap@:reads/SRP012000/SRS633899/SRX588503/SRR1374902/SRR1374902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGXW-09A-01D_TARGET-20-PATGXW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGXW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGXW-09A-01D	DNA	EFO	SRS633899	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGXW-09A-01D A41497 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41497	SRX588503	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATGXW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATGXW-09A-01D A41497 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41497_1_lane_dupsFlagged.bam	SRR1374902	@dbgap@:reads/SRP012000/SRS633899/SRX588503/SRR1374902/SRR1374902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGXW-09A-01D_TARGET-20-PATGXW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATGXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGXW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGXW-14A-01D	DNA	EFO	SRS635771	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGXW-14A-01D A42322 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42322	SRX593605	"Specific Capture analysis of normal sample TARGET-20-PATGXW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATGXW-14A-01D A42322 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42322_1_lane_dupsFlagged.bam	SRR1386023	@dbgap@:reads/SRP012000/SRS635771/SRX593605/SRR1386023/SRR1386023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATGXW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATGXW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATGXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGXW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGXW-14A-01D	DNA	EFO	SRS635771	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGXW-14A-01D A42322 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42322	SRX593605	"Specific Capture analysis of normal sample TARGET-20-PATGXW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATGXW-14A-01D A42322 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42322_1_lane_dupsFlagged.bam	SRR1386023	@dbgap@:reads/SRP012000/SRS635771/SRX593605/SRR1386023/SRR1386023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGXW-09A-01D_TARGET-20-PATGXW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATGXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATGXW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGXW-14A-01D	DNA	EFO	SRS635771	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGXW-14A-01D A42322 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42322	SRX593605	"Specific Capture analysis of normal sample TARGET-20-PATGXW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATGXW-14A-01D A42322 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42322_1_lane_dupsFlagged.bam	SRR1386023	@dbgap@:reads/SRP012000/SRS635771/SRX593605/SRR1386023/SRR1386023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATGXW-09A-01D_TARGET-20-PATGXW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATHAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHAE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHAE-04A-01D	DNA	EFO	SRS637522	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHAE-04A-01D A42726 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42726	SRX597959	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHAE-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATHAE-04A-01D A42726 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42726_1_lane_dupsFlagged.bam	SRR1395290	@dbgap@:reads/SRP012000/SRS637522/SRX597959/SRR1395290/SRR1395290.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATHAE-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATHAE-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATHAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHAE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHAE-04A-01D	DNA	EFO	SRS637522	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHAE-04A-01D A42726 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42726	SRX597959	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHAE-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATHAE-04A-01D A42726 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42726_1_lane_dupsFlagged.bam	SRR1395290	@dbgap@:reads/SRP012000/SRS637522/SRX597959/SRR1395290/SRR1395290.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHAE-04A-01D_TARGET-20-PATHAE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATHAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHAE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHAE-04A-01D	DNA	EFO	SRS637522	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHAE-04A-01D A42726 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A42726	SRX597959	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHAE-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATHAE-04A-01D A42726 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42726_1_lane_dupsFlagged.bam	SRR1395290	@dbgap@:reads/SRP012000/SRS637522/SRX597959/SRR1395290/SRR1395290.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHAE-04A-01D_TARGET-20-PATHAE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATHAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHAE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHAE-09A-01D	DNA	EFO	SRS635581	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHAE-09A-01D A41919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41919	SRX593400	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHAE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATHAE-09A-01D A41919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41919_1_lane_dupsFlagged.bam	SRR1385884	@dbgap@:reads/SRP012000/SRS635581/SRX593400/SRR1385884/SRR1385884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATHAE-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATHAE-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATHAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHAE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHAE-09A-01D	DNA	EFO	SRS635581	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHAE-09A-01D A41919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41919	SRX593400	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHAE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATHAE-09A-01D A41919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41919_1_lane_dupsFlagged.bam	SRR1385884	@dbgap@:reads/SRP012000/SRS635581/SRX593400/SRR1385884/SRR1385884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHAE-09A-01D_TARGET-20-PATHAE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATHAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHAE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHAE-09A-01D	DNA	EFO	SRS635581	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHAE-09A-01D A41919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41919	SRX593400	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHAE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATHAE-09A-01D A41919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41919_1_lane_dupsFlagged.bam	SRR1385884	@dbgap@:reads/SRP012000/SRS635581/SRX593400/SRR1385884/SRR1385884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHAE-09A-01D_TARGET-20-PATHAE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATHAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHAE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHAE-14A-01D	DNA	EFO	SRS637402	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHAE-14A-01D A42837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42837	SRX597809	"Specific Capture analysis of normal sample TARGET-20-PATHAE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATHAE-14A-01D A42837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42837_1_lane_dupsFlagged.bam	SRR1395074	@dbgap@:reads/SRP012000/SRS637402/SRX597809/SRR1395074/SRR1395074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATHAE-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATHAE-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATHAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHAE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHAE-14A-01D	DNA	EFO	SRS637402	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHAE-14A-01D A42837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42837	SRX597809	"Specific Capture analysis of normal sample TARGET-20-PATHAE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATHAE-14A-01D A42837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42837_1_lane_dupsFlagged.bam	SRR1395074	@dbgap@:reads/SRP012000/SRS637402/SRX597809/SRR1395074/SRR1395074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHAE-04A-01D_TARGET-20-PATHAE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATHAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHAE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHAE-14A-01D	DNA	EFO	SRS637402	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHAE-14A-01D A42837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42837	SRX597809	"Specific Capture analysis of normal sample TARGET-20-PATHAE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATHAE-14A-01D A42837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42837_1_lane_dupsFlagged.bam	SRR1395074	@dbgap@:reads/SRP012000/SRS637402/SRX597809/SRR1395074/SRR1395074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHAE-04A-01D_TARGET-20-PATHAE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATHAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHAE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHAE-14A-01D	DNA	EFO	SRS637402	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHAE-14A-01D A42837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42837	SRX597809	"Specific Capture analysis of normal sample TARGET-20-PATHAE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATHAE-14A-01D A42837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42837_1_lane_dupsFlagged.bam	SRR1395074	@dbgap@:reads/SRP012000/SRS637402/SRX597809/SRR1395074/SRR1395074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHAE-09A-01D_TARGET-20-PATHAE-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATHAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHAE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHAE-14A-01D	DNA	EFO	SRS637402	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHAE-14A-01D A42837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	349	A42837	SRX597809	"Specific Capture analysis of normal sample TARGET-20-PATHAE-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-20-PATHAE-14A-01D A42837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42837_1_lane_dupsFlagged.bam	SRR1395074	@dbgap@:reads/SRP012000/SRS637402/SRX597809/SRR1395074/SRR1395074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHAE-09A-01D_TARGET-20-PATHAE-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATHIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHIW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHIW-04A-01D	DNA	EFO	SRS637320	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHIW-04A-01D A42197 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42197	SRX597693	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHIW-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATHIW-04A-01D A42197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42197_1_lane_dupsFlagged.bam	SRR1395036	@dbgap@:reads/SRP012000/SRS637320/SRX597693/SRR1395036/SRR1395036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATHIW-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATHIW-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATHIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHIW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHIW-04A-01D	DNA	EFO	SRS637320	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHIW-04A-01D A42197 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42197	SRX597693	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHIW-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATHIW-04A-01D A42197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42197_1_lane_dupsFlagged.bam	SRR1395036	@dbgap@:reads/SRP012000/SRS637320/SRX597693/SRR1395036/SRR1395036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHIW-04A-01D_TARGET-20-PATHIW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATHIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHIW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHIW-04A-01D	DNA	EFO	SRS637320	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHIW-04A-01D A42197 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42197	SRX597693	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHIW-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATHIW-04A-01D A42197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42197_1_lane_dupsFlagged.bam	SRR1395036	@dbgap@:reads/SRP012000/SRS637320/SRX597693/SRR1395036/SRR1395036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHIW-04A-01D_TARGET-20-PATHIW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATHIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHIW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHIW-09A-01D	DNA	EFO	SRS633923	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHIW-09A-01D A41498 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41498	SRX588528	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHIW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATHIW-09A-01D A41498 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41498_1_lane_dupsFlagged.bam	SRR1374867	@dbgap@:reads/SRP012000/SRS633923/SRX588528/SRR1374867/SRR1374867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATHIW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATHIW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATHIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHIW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHIW-09A-01D	DNA	EFO	SRS633923	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHIW-09A-01D A41498 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41498	SRX588528	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHIW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATHIW-09A-01D A41498 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41498_1_lane_dupsFlagged.bam	SRR1374867	@dbgap@:reads/SRP012000/SRS633923/SRX588528/SRR1374867/SRR1374867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHIW-09A-01D_TARGET-20-PATHIW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATHIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHIW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHIW-09A-01D	DNA	EFO	SRS633923	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHIW-09A-01D A41498 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41498	SRX588528	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHIW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATHIW-09A-01D A41498 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41498_1_lane_dupsFlagged.bam	SRR1374867	@dbgap@:reads/SRP012000/SRS633923/SRX588528/SRR1374867/SRR1374867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHIW-09A-01D_TARGET-20-PATHIW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATHIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHIW-14A-01D	DNA	EFO	SRS637484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHIW-14A-01D A42939 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42939	SRX597914	"Specific Capture analysis of normal sample TARGET-20-PATHIW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATHIW-14A-01D A42939 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42939_1_lane_dupsFlagged.bam	SRR1395166	@dbgap@:reads/SRP012000/SRS637484/SRX597914/SRR1395166/SRR1395166.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATHIW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATHIW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATHIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHIW-14A-01D	DNA	EFO	SRS637484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHIW-14A-01D A42939 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42939	SRX597914	"Specific Capture analysis of normal sample TARGET-20-PATHIW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATHIW-14A-01D A42939 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42939_1_lane_dupsFlagged.bam	SRR1395166	@dbgap@:reads/SRP012000/SRS637484/SRX597914/SRR1395166/SRR1395166.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHIW-04A-01D_TARGET-20-PATHIW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATHIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHIW-14A-01D	DNA	EFO	SRS637484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHIW-14A-01D A42939 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42939	SRX597914	"Specific Capture analysis of normal sample TARGET-20-PATHIW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATHIW-14A-01D A42939 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42939_1_lane_dupsFlagged.bam	SRR1395166	@dbgap@:reads/SRP012000/SRS637484/SRX597914/SRR1395166/SRR1395166.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHIW-04A-01D_TARGET-20-PATHIW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATHIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHIW-14A-01D	DNA	EFO	SRS637484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHIW-14A-01D A42939 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42939	SRX597914	"Specific Capture analysis of normal sample TARGET-20-PATHIW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATHIW-14A-01D A42939 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42939_1_lane_dupsFlagged.bam	SRR1395166	@dbgap@:reads/SRP012000/SRS637484/SRX597914/SRR1395166/SRR1395166.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHIW-09A-01D_TARGET-20-PATHIW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATHIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHIW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHIW-14A-01D	DNA	EFO	SRS637484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHIW-14A-01D A42939 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42939	SRX597914	"Specific Capture analysis of normal sample TARGET-20-PATHIW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATHIW-14A-01D A42939 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42939_1_lane_dupsFlagged.bam	SRR1395166	@dbgap@:reads/SRP012000/SRS637484/SRX597914/SRR1395166/SRR1395166.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHIW-09A-01D_TARGET-20-PATHIW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATHMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHMB-09A-01D	DNA	EFO	SRS633974	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHMB-09A-01D A41499 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41499	SRX588580	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHMB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATHMB-09A-01D A41499 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41499_1_lane_dupsFlagged.bam	SRR1374832	@dbgap@:reads/SRP012000/SRS633974/SRX588580/SRR1374832/SRR1374832.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATHMB-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATHMB-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATHVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHVG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHVG-03A-01D	DNA	EFO	SRS629152	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHVG-03A-01D A33320 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33320	SRX575208	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHVG-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATHVG-03A-01D A33320 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33320_1_lane_dupsFlagged.bam	SRR1346443	@dbgap@:reads/SRP012000/SRS629152/SRX575208/SRR1346443/SRR1346443.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATHVG-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATHVG-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATHVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHVG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHVG-03A-01D	DNA	EFO	SRS629152	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHVG-03A-01D A33320 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33320	SRX575208	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHVG-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATHVG-03A-01D A33320 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33320_1_lane_dupsFlagged.bam	SRR1346443	@dbgap@:reads/SRP012000/SRS629152/SRX575208/SRR1346443/SRR1346443.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHVG-03A-01D_TARGET-20-PATHVG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATHVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHVG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHVG-03A-01D	DNA	EFO	SRS629152	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHVG-03A-01D A33320 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33320	SRX575208	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHVG-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATHVG-03A-01D A33320 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33320_1_lane_dupsFlagged.bam	SRR1346443	@dbgap@:reads/SRP012000/SRS629152/SRX575208/SRR1346443/SRR1346443.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHVG-03A-01D_TARGET-20-PATHVG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATHVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHVG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHVG-04A-01D	DNA	EFO	SRS637326	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHVG-04A-01D A42264 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42264	SRX597705	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHVG-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATHVG-04A-01D A42264 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42264_1_lane_dupsFlagged.bam	SRR1395008	@dbgap@:reads/SRP012000/SRS637326/SRX597705/SRR1395008/SRR1395008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATHVG-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATHVG-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATHVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHVG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHVG-04A-01D	DNA	EFO	SRS637326	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHVG-04A-01D A42264 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42264	SRX597705	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHVG-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATHVG-04A-01D A42264 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42264_1_lane_dupsFlagged.bam	SRR1395008	@dbgap@:reads/SRP012000/SRS637326/SRX597705/SRR1395008/SRR1395008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHVG-04A-01D_TARGET-20-PATHVG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATHVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHVG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHVG-04A-01D	DNA	EFO	SRS637326	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHVG-04A-01D A42264 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42264	SRX597705	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHVG-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATHVG-04A-01D A42264 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42264_1_lane_dupsFlagged.bam	SRR1395008	@dbgap@:reads/SRP012000/SRS637326/SRX597705/SRR1395008/SRR1395008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHVG-04A-01D_TARGET-20-PATHVG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATHVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHVG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHVG-14A-01D	DNA	EFO	SRS637443	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHVG-14A-01D A42936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42936	SRX597857	"Specific Capture analysis of normal sample TARGET-20-PATHVG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATHVG-14A-01D A42936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42936_1_lane_dupsFlagged.bam	SRR1395173	@dbgap@:reads/SRP012000/SRS637443/SRX597857/SRR1395173/SRR1395173.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATHVG-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATHVG-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATHVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHVG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHVG-14A-01D	DNA	EFO	SRS637443	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHVG-14A-01D A42936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42936	SRX597857	"Specific Capture analysis of normal sample TARGET-20-PATHVG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATHVG-14A-01D A42936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42936_1_lane_dupsFlagged.bam	SRR1395173	@dbgap@:reads/SRP012000/SRS637443/SRX597857/SRR1395173/SRR1395173.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHVG-03A-01D_TARGET-20-PATHVG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATHVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHVG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHVG-14A-01D	DNA	EFO	SRS637443	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHVG-14A-01D A42936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42936	SRX597857	"Specific Capture analysis of normal sample TARGET-20-PATHVG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATHVG-14A-01D A42936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42936_1_lane_dupsFlagged.bam	SRR1395173	@dbgap@:reads/SRP012000/SRS637443/SRX597857/SRR1395173/SRR1395173.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHVG-03A-01D_TARGET-20-PATHVG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATHVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHVG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHVG-14A-01D	DNA	EFO	SRS637443	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHVG-14A-01D A42936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42936	SRX597857	"Specific Capture analysis of normal sample TARGET-20-PATHVG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATHVG-14A-01D A42936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42936_1_lane_dupsFlagged.bam	SRR1395173	@dbgap@:reads/SRP012000/SRS637443/SRX597857/SRR1395173/SRR1395173.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHVG-04A-01D_TARGET-20-PATHVG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATHVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHVG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHVG-14A-01D	DNA	EFO	SRS637443	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHVG-14A-01D A42936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42936	SRX597857	"Specific Capture analysis of normal sample TARGET-20-PATHVG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATHVG-14A-01D A42936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42936_1_lane_dupsFlagged.bam	SRR1395173	@dbgap@:reads/SRP012000/SRS637443/SRX597857/SRR1395173/SRR1395173.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHVG-04A-01D_TARGET-20-PATHVG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATHWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHWS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHWS-09A-01D	DNA	EFO	SRS633896	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHWS-09A-01D A41500 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41500	SRX588500	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHWS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATHWS-09A-01D A41500 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41500_1_lane_dupsFlagged.bam	SRR1374840	@dbgap@:reads/SRP012000/SRS633896/SRX588500/SRR1374840/SRR1374840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATHWS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATHWS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATHWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHWS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHWS-09A-01D	DNA	EFO	SRS633896	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHWS-09A-01D A41500 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41500	SRX588500	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHWS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATHWS-09A-01D A41500 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41500_1_lane_dupsFlagged.bam	SRR1374840	@dbgap@:reads/SRP012000/SRS633896/SRX588500/SRR1374840/SRR1374840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHWS-09A-01D_TARGET-20-PATHWS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATHWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHWS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHWS-09A-01D	DNA	EFO	SRS633896	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHWS-09A-01D A41500 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41500	SRX588500	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHWS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATHWS-09A-01D A41500 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41500_1_lane_dupsFlagged.bam	SRR1374840	@dbgap@:reads/SRP012000/SRS633896/SRX588500/SRR1374840/SRR1374840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHWS-09A-01D_TARGET-20-PATHWS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATHWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHWS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHWS-14A-01D	DNA	EFO	SRS635982	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHWS-14A-01D A42590 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42590	SRX593947	"Specific Capture analysis of normal sample TARGET-20-PATHWS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATHWS-14A-01D A42590 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42590_1_lane_dupsFlagged.bam	SRR1386484	@dbgap@:reads/SRP012000/SRS635982/SRX593947/SRR1386484/SRR1386484.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATHWS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATHWS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATHWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHWS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHWS-14A-01D	DNA	EFO	SRS635982	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHWS-14A-01D A42590 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42590	SRX593947	"Specific Capture analysis of normal sample TARGET-20-PATHWS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATHWS-14A-01D A42590 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42590_1_lane_dupsFlagged.bam	SRR1386484	@dbgap@:reads/SRP012000/SRS635982/SRX593947/SRR1386484/SRR1386484.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHWS-09A-01D_TARGET-20-PATHWS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATHWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHWS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHWS-14A-01D	DNA	EFO	SRS635982	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHWS-14A-01D A42590 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42590	SRX593947	"Specific Capture analysis of normal sample TARGET-20-PATHWS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATHWS-14A-01D A42590 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42590_1_lane_dupsFlagged.bam	SRR1386484	@dbgap@:reads/SRP012000/SRS635982/SRX593947/SRR1386484/SRR1386484.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHWS-09A-01D_TARGET-20-PATHWS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATHZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHZC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHZC-09A-01D	DNA	EFO	SRS629135	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHZC-09A-01D A33322 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33322	SRX575190	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHZC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATHZC-09A-01D A33322 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33322_1_lane_dupsFlagged.bam	SRR1346426	@dbgap@:reads/SRP012000/SRS629135/SRX575190/SRR1346426/SRR1346426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATHZC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATHZC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATHZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHZC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHZC-09A-01D	DNA	EFO	SRS629135	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHZC-09A-01D A33322 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33322	SRX575190	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHZC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATHZC-09A-01D A33322 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33322_1_lane_dupsFlagged.bam	SRR1346426	@dbgap@:reads/SRP012000/SRS629135/SRX575190/SRR1346426/SRR1346426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHZC-09A-01D_TARGET-20-PATHZC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATHZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHZC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHZC-09A-01D	DNA	EFO	SRS629135	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHZC-09A-01D A33322 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33322	SRX575190	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHZC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATHZC-09A-01D A33322 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33322_1_lane_dupsFlagged.bam	SRR1346426	@dbgap@:reads/SRP012000/SRS629135/SRX575190/SRR1346426/SRR1346426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHZC-09A-01D_TARGET-20-PATHZC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATHZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHZC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHZC-14A-01D	DNA	EFO	SRS635709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHZC-14A-01D A41700 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41700	SRX593533	"Specific Capture analysis of normal sample TARGET-20-PATHZC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATHZC-14A-01D A41700 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41700_1_lane_dupsFlagged.bam	SRR1386003	@dbgap@:reads/SRP012000/SRS635709/SRX593533/SRR1386003/SRR1386003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATHZC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATHZC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATHZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHZC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHZC-14A-01D	DNA	EFO	SRS635709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHZC-14A-01D A41700 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41700	SRX593533	"Specific Capture analysis of normal sample TARGET-20-PATHZC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATHZC-14A-01D A41700 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41700_1_lane_dupsFlagged.bam	SRR1386003	@dbgap@:reads/SRP012000/SRS635709/SRX593533/SRR1386003/SRR1386003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHZC-09A-01D_TARGET-20-PATHZC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATHZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHZC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHZC-14A-01D	DNA	EFO	SRS635709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHZC-14A-01D A41700 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41700	SRX593533	"Specific Capture analysis of normal sample TARGET-20-PATHZC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATHZC-14A-01D A41700 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41700_1_lane_dupsFlagged.bam	SRR1386003	@dbgap@:reads/SRP012000/SRS635709/SRX593533/SRR1386003/SRR1386003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHZC-09A-01D_TARGET-20-PATHZC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATHZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHZL-09A-01D	DNA	EFO	SRS629113	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHZL-09A-01D A33321 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33321	SRX575169	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHZL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATHZL-09A-01D A33321 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33321_1_lane_dupsFlagged.bam	SRR1346490	@dbgap@:reads/SRP012000/SRS629113/SRX575169/SRR1346490/SRR1346490.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATHZL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATHZL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATHZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHZL-09A-01D	DNA	EFO	SRS629113	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHZL-09A-01D A33321 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33321	SRX575169	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHZL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATHZL-09A-01D A33321 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33321_1_lane_dupsFlagged.bam	SRR1346490	@dbgap@:reads/SRP012000/SRS629113/SRX575169/SRR1346490/SRR1346490.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHZL-09A-01D_TARGET-20-PATHZL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATHZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHZL-09A-01D	DNA	EFO	SRS629113	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHZL-09A-01D A33321 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33321	SRX575169	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATHZL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATHZL-09A-01D A33321 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33321_1_lane_dupsFlagged.bam	SRR1346490	@dbgap@:reads/SRP012000/SRS629113/SRX575169/SRR1346490/SRR1346490.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHZL-09A-01D_TARGET-20-PATHZL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATHZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHZL-14A-01D	DNA	EFO	SRS635635	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHZL-14A-01D A41699 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41699	SRX593457	"Specific Capture analysis of normal sample TARGET-20-PATHZL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATHZL-14A-01D A41699 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41699_1_lane_dupsFlagged.bam	SRR1385963	@dbgap@:reads/SRP012000/SRS635635/SRX593457/SRR1385963/SRR1385963.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATHZL-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATHZL-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATHZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHZL-14A-01D	DNA	EFO	SRS635635	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHZL-14A-01D A41699 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41699	SRX593457	"Specific Capture analysis of normal sample TARGET-20-PATHZL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATHZL-14A-01D A41699 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41699_1_lane_dupsFlagged.bam	SRR1385963	@dbgap@:reads/SRP012000/SRS635635/SRX593457/SRR1385963/SRR1385963.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHZL-09A-01D_TARGET-20-PATHZL-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATHZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATHZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATHZL-14A-01D	DNA	EFO	SRS635635	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATHZL-14A-01D A41699 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41699	SRX593457	"Specific Capture analysis of normal sample TARGET-20-PATHZL-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATHZL-14A-01D A41699 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41699_1_lane_dupsFlagged.bam	SRR1385963	@dbgap@:reads/SRP012000/SRS635635/SRX593457/SRR1385963/SRR1385963.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATHZL-09A-01D_TARGET-20-PATHZL-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATIAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATIAB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAB-09A-01D	DNA	EFO	SRS629160	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAB-09A-01D A33323 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33323	SRX575216	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATIAB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATIAB-09A-01D A33323 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33323_1_lane_dupsFlagged.bam	SRR1346462	@dbgap@:reads/SRP012000/SRS629160/SRX575216/SRR1346462/SRR1346462.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATIAB-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATIAB-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATIAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATIAB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAB-09A-01D	DNA	EFO	SRS629160	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAB-09A-01D A33323 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33323	SRX575216	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATIAB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATIAB-09A-01D A33323 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33323_1_lane_dupsFlagged.bam	SRR1346462	@dbgap@:reads/SRP012000/SRS629160/SRX575216/SRR1346462/SRR1346462.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATIAB-09A-01D_TARGET-20-PATIAB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATIAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATIAB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAB-09A-01D	DNA	EFO	SRS629160	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAB-09A-01D A33323 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33323	SRX575216	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATIAB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATIAB-09A-01D A33323 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33323_1_lane_dupsFlagged.bam	SRR1346462	@dbgap@:reads/SRP012000/SRS629160/SRX575216/SRR1346462/SRR1346462.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATIAB-09A-01D_TARGET-20-PATIAB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATIAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATIAB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAB-14A-01D	DNA	EFO	SRS635702	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAB-14A-01D A41701 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41701	SRX593525	"Specific Capture analysis of normal sample TARGET-20-PATIAB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATIAB-14A-01D A41701 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41701_1_lane_dupsFlagged.bam	SRR1385985	@dbgap@:reads/SRP012000/SRS635702/SRX593525/SRR1385985/SRR1385985.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATIAB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATIAB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATIAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATIAB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAB-14A-01D	DNA	EFO	SRS635702	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAB-14A-01D A41701 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41701	SRX593525	"Specific Capture analysis of normal sample TARGET-20-PATIAB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATIAB-14A-01D A41701 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41701_1_lane_dupsFlagged.bam	SRR1385985	@dbgap@:reads/SRP012000/SRS635702/SRX593525/SRR1385985/SRR1385985.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATIAB-09A-01D_TARGET-20-PATIAB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATIAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATIAB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAB-14A-01D	DNA	EFO	SRS635702	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAB-14A-01D A41701 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41701	SRX593525	"Specific Capture analysis of normal sample TARGET-20-PATIAB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATIAB-14A-01D A41701 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41701_1_lane_dupsFlagged.bam	SRR1385985	@dbgap@:reads/SRP012000/SRS635702/SRX593525/SRR1385985/SRR1385985.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATIAB-09A-01D_TARGET-20-PATIAB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-02D	DNA	EFO	SRS301167	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-04A-02D A42271 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42271	SRX597701	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATIAK-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATIAK-04A-02D A42271 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42271_1_lane_dupsFlagged.bam	SRR1395001	@dbgap@:reads/SRP012000/SRS301167/SRX597701/SRR1395001/SRR1395001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATIAK-04A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATIAK-04A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-02D	DNA	EFO	SRS301167	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-04A-02D A42271 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42271	SRX597701	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATIAK-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATIAK-04A-02D A42271 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42271_1_lane_dupsFlagged.bam	SRR1395001	@dbgap@:reads/SRP012000/SRS301167/SRX597701/SRR1395001/SRR1395001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATIAK-04A-02D_TARGET-20-PATIAK-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-02D	DNA	EFO	SRS301167	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-04A-02D A42271 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42271	SRX597701	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATIAK-04A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATIAK-04A-02D A42271 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42271_1_lane_dupsFlagged.bam	SRR1395001	@dbgap@:reads/SRP012000/SRS301167/SRX597701/SRR1395001/SRR1395001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATIAK-04A-02D_TARGET-20-PATIAK-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-02D	DNA	EFO	SRS628895	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-09A-02D A32311 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32311	SRX574951	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATIAK-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATIAK-09A-02D A32311 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32311_1_lane_dupsFlagged.bam	SRR1346157	@dbgap@:reads/SRP012000/SRS628895/SRX574951/SRR1346157/SRR1346157.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATIAK-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATIAK-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-02D	DNA	EFO	SRS628895	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-09A-02D A32311 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32311	SRX574951	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATIAK-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATIAK-09A-02D A32311 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32311_1_lane_dupsFlagged.bam	SRR1346157	@dbgap@:reads/SRP012000/SRS628895/SRX574951/SRR1346157/SRR1346157.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATIAK-09A-02D_TARGET-20-PATIAK-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-02D	DNA	EFO	SRS628895	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-09A-02D A32311 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32311	SRX574951	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATIAK-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATIAK-09A-02D A32311 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32311_1_lane_dupsFlagged.bam	SRR1346157	@dbgap@:reads/SRP012000/SRS628895/SRX574951/SRR1346157/SRR1346157.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATIAK-09A-02D_TARGET-20-PATIAK-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-02D	DNA	EFO	SRS635957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-14A-02D A42532 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42532	SRX593918	"Specific Capture analysis of normal sample TARGET-20-PATIAK-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATIAK-14A-02D A42532 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42532_1_lane_dupsFlagged.bam	SRR1386356	@dbgap@:reads/SRP012000/SRS635957/SRX593918/SRR1386356/SRR1386356.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATIAK-14A-02D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATIAK-14A-02D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-02D	DNA	EFO	SRS635957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-14A-02D A42532 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42532	SRX593918	"Specific Capture analysis of normal sample TARGET-20-PATIAK-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATIAK-14A-02D A42532 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42532_1_lane_dupsFlagged.bam	SRR1386356	@dbgap@:reads/SRP012000/SRS635957/SRX593918/SRR1386356/SRR1386356.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATIAK-04A-02D_TARGET-20-PATIAK-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-02D	DNA	EFO	SRS635957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-14A-02D A42532 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42532	SRX593918	"Specific Capture analysis of normal sample TARGET-20-PATIAK-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATIAK-14A-02D A42532 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42532_1_lane_dupsFlagged.bam	SRR1386356	@dbgap@:reads/SRP012000/SRS635957/SRX593918/SRR1386356/SRR1386356.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATIAK-04A-02D_TARGET-20-PATIAK-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-02D	DNA	EFO	SRS635957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-14A-02D A42532 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42532	SRX593918	"Specific Capture analysis of normal sample TARGET-20-PATIAK-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATIAK-14A-02D A42532 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42532_1_lane_dupsFlagged.bam	SRR1386356	@dbgap@:reads/SRP012000/SRS635957/SRX593918/SRR1386356/SRR1386356.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATIAK-09A-02D_TARGET-20-PATIAK-14A-02D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-14A-02D	DNA	EFO	SRS635957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-14A-02D A42532 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42532	SRX593918	"Specific Capture analysis of normal sample TARGET-20-PATIAK-14A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATIAK-14A-02D A42532 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42532_1_lane_dupsFlagged.bam	SRR1386356	@dbgap@:reads/SRP012000/SRS635957/SRX593918/SRR1386356/SRR1386356.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATIAK-09A-02D_TARGET-20-PATIAK-14A-02D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIDY-09A-01D	DNA	EFO	SRS633928	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIDY-09A-01D A41501 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41501	SRX588533	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATIDY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATIDY-09A-01D A41501 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41501_1_lane_dupsFlagged.bam	SRR1374913	@dbgap@:reads/SRP012000/SRS633928/SRX588533/SRR1374913/SRR1374913.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATIDY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATIDY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIDY-09A-01D	DNA	EFO	SRS633928	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIDY-09A-01D A41501 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41501	SRX588533	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATIDY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATIDY-09A-01D A41501 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41501_1_lane_dupsFlagged.bam	SRR1374913	@dbgap@:reads/SRP012000/SRS633928/SRX588533/SRR1374913/SRR1374913.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATIDY-09A-01D_TARGET-20-PATIDY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIDY-09A-01D	DNA	EFO	SRS633928	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIDY-09A-01D A41501 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41501	SRX588533	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATIDY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATIDY-09A-01D A41501 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41501_1_lane_dupsFlagged.bam	SRR1374913	@dbgap@:reads/SRP012000/SRS633928/SRX588533/SRR1374913/SRR1374913.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATIDY-09A-01D_TARGET-20-PATIDY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATIDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIDY-14A-01D	DNA	EFO	SRS635931	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIDY-14A-01D A42531 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42531	SRX593891	"Specific Capture analysis of normal sample TARGET-20-PATIDY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATIDY-14A-01D A42531 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42531_1_lane_dupsFlagged.bam	SRR1386376	@dbgap@:reads/SRP012000/SRS635931/SRX593891/SRR1386376/SRR1386376.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATIDY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATIDY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATIDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIDY-14A-01D	DNA	EFO	SRS635931	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIDY-14A-01D A42531 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42531	SRX593891	"Specific Capture analysis of normal sample TARGET-20-PATIDY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATIDY-14A-01D A42531 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42531_1_lane_dupsFlagged.bam	SRR1386376	@dbgap@:reads/SRP012000/SRS635931/SRX593891/SRR1386376/SRR1386376.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATIDY-09A-01D_TARGET-20-PATIDY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATIDY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIDY-14A-01D	DNA	EFO	SRS635931	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIDY-14A-01D A42531 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42531	SRX593891	"Specific Capture analysis of normal sample TARGET-20-PATIDY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATIDY-14A-01D A42531 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42531_1_lane_dupsFlagged.bam	SRR1386376	@dbgap@:reads/SRP012000/SRS635931/SRX593891/SRR1386376/SRR1386376.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATIDY-09A-01D_TARGET-20-PATIDY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATIGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATIGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIGE-09A-01D	DNA	EFO	SRS629169	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIGE-09A-01D A33324 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33324	SRX575225	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATIGE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATIGE-09A-01D A33324 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33324_1_lane_dupsFlagged.bam	SRR1346430	@dbgap@:reads/SRP012000/SRS629169/SRX575225/SRR1346430/SRR1346430.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATIGE-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATIGE-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATIHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATIHH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIHH-03A-01D	DNA	EFO	SRS629140	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIHH-03A-01D A33325 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33325	SRX575195	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATIHH-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATIHH-03A-01D A33325 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33325_1_lane_dupsFlagged.bam	SRR1346435	@dbgap@:reads/SRP012000/SRS629140/SRX575195/SRR1346435/SRR1346435.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATIHH-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATIHH-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATIII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATIII-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIII-03A-01D	DNA	EFO	SRS635493	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIII-03A-01D A41710 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41710	SRX593216	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATIII-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PATIII-03A-01D A41710 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41710_1_lane_dupsFlagged.bam	SRR1385648	@dbgap@:reads/SRP012000/SRS635493/SRX593216/SRR1385648/SRR1385648.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATIII-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATIII-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATIIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATIIM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIIM-03A-01D	DNA	EFO	SRS635437	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIIM-03A-01D A41711 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41711	SRX593159	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATIIM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PATIIM-03A-01D A41711 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41711_1_lane_dupsFlagged.bam	SRR1385596	@dbgap@:reads/SRP012000/SRS635437/SRX593159/SRR1385596/SRR1385596.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATIIM-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATIIM-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATILU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATILU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATILU-09A-01D	DNA	EFO	SRS633917	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATILU-09A-01D A41502 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41502	SRX588522	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATILU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATILU-09A-01D A41502 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41502_1_lane_dupsFlagged.bam	SRR1374887	@dbgap@:reads/SRP012000/SRS633917/SRX588522/SRR1374887/SRR1374887.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATILU-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATILU-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATILU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATILU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATILU-09A-01D	DNA	EFO	SRS633917	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATILU-09A-01D A41502 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41502	SRX588522	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATILU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATILU-09A-01D A41502 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41502_1_lane_dupsFlagged.bam	SRR1374887	@dbgap@:reads/SRP012000/SRS633917/SRX588522/SRR1374887/SRR1374887.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATILU-09A-01D_TARGET-20-PATILU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATILU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATILU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATILU-09A-01D	DNA	EFO	SRS633917	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATILU-09A-01D A41502 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41502	SRX588522	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATILU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATILU-09A-01D A41502 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41502_1_lane_dupsFlagged.bam	SRR1374887	@dbgap@:reads/SRP012000/SRS633917/SRX588522/SRR1374887/SRR1374887.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATILU-09A-01D_TARGET-20-PATILU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATILU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATILU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATILU-14A-01D	DNA	EFO	SRS636026	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATILU-14A-01D A42588 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42588	SRX594003	"Specific Capture analysis of normal sample TARGET-20-PATILU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATILU-14A-01D A42588 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42588_1_lane_dupsFlagged.bam	SRR1386430	@dbgap@:reads/SRP012000/SRS636026/SRX594003/SRR1386430/SRR1386430.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATILU-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATILU-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATILU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATILU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATILU-14A-01D	DNA	EFO	SRS636026	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATILU-14A-01D A42588 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42588	SRX594003	"Specific Capture analysis of normal sample TARGET-20-PATILU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATILU-14A-01D A42588 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42588_1_lane_dupsFlagged.bam	SRR1386430	@dbgap@:reads/SRP012000/SRS636026/SRX594003/SRR1386430/SRR1386430.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATILU-09A-01D_TARGET-20-PATILU-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATILU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATILU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATILU-14A-01D	DNA	EFO	SRS636026	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATILU-14A-01D A42588 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42588	SRX594003	"Specific Capture analysis of normal sample TARGET-20-PATILU-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATILU-14A-01D A42588 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42588_1_lane_dupsFlagged.bam	SRR1386430	@dbgap@:reads/SRP012000/SRS636026/SRX594003/SRR1386430/SRR1386430.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATILU-09A-01D_TARGET-20-PATILU-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATIRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATIRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIRW-09A-01D	DNA	EFO	SRS635444	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIRW-09A-01D A41712 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41712	SRX593166	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATIRW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATIRW-09A-01D A41712 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41712_1_lane_dupsFlagged.bam	SRR1385600	@dbgap@:reads/SRP012000/SRS635444/SRX593166/SRR1385600/SRR1385600.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATIRW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATIRW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATISD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATISD-09A-01D	DNA	EFO	SRS628274	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATISD-09A-01D A31201 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31201	SRX573327	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATISD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATISD-09A-01D A31201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31201_1_lane_dupsFlagged.bam	SRR1342627	@dbgap@:reads/SRP012000/SRS628274/SRX573327/SRR1342627/SRR1342627.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATISD-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATISD-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATISD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATISD-09A-01D	DNA	EFO	SRS628274	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATISD-09A-01D A31201 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31201	SRX573327	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATISD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATISD-09A-01D A31201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31201_1_lane_dupsFlagged.bam	SRR1342627	@dbgap@:reads/SRP012000/SRS628274/SRX573327/SRR1342627/SRR1342627.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATISD-09A-01D_TARGET-20-PATISD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATISD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATISD-09A-01D	DNA	EFO	SRS628274	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATISD-09A-01D A31201 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31201	SRX573327	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATISD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATISD-09A-01D A31201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31201_1_lane_dupsFlagged.bam	SRR1342627	@dbgap@:reads/SRP012000/SRS628274/SRX573327/SRR1342627/SRR1342627.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATISD-09A-01D_TARGET-20-PATISD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATISD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATISD-14A-01D	DNA	EFO	SRS635723	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATISD-14A-01D A42294 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42294	SRX593552	"Specific Capture analysis of normal sample TARGET-20-PATISD-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATISD-14A-01D A42294 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42294_1_lane_dupsFlagged.bam	SRR1386103	@dbgap@:reads/SRP012000/SRS635723/SRX593552/SRR1386103/SRR1386103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATISD-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATISD-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATISD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATISD-14A-01D	DNA	EFO	SRS635723	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATISD-14A-01D A42294 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42294	SRX593552	"Specific Capture analysis of normal sample TARGET-20-PATISD-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATISD-14A-01D A42294 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42294_1_lane_dupsFlagged.bam	SRR1386103	@dbgap@:reads/SRP012000/SRS635723/SRX593552/SRR1386103/SRR1386103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATISD-09A-01D_TARGET-20-PATISD-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATISD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATISD-14A-01D	DNA	EFO	SRS635723	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATISD-14A-01D A42294 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42294	SRX593552	"Specific Capture analysis of normal sample TARGET-20-PATISD-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATISD-14A-01D A42294 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42294_1_lane_dupsFlagged.bam	SRR1386103	@dbgap@:reads/SRP012000/SRS635723/SRX593552/SRR1386103/SRR1386103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATISD-09A-01D_TARGET-20-PATISD-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATISV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATISV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATISV-09A-01D	DNA	EFO	SRS629110	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATISV-09A-01D A33326 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33326	SRX575166	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATISV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATISV-09A-01D A33326 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33326_1_lane_dupsFlagged.bam	SRR1346468	@dbgap@:reads/SRP012000/SRS629110/SRX575166/SRR1346468/SRR1346468.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATISV-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATISV-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATIVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATIVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIVW-09A-01D	DNA	EFO	SRS629125	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIVW-09A-01D A33327 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33327	SRX575182	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATIVW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATIVW-09A-01D A33327 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33327_1_lane_dupsFlagged.bam	SRR1346495	@dbgap@:reads/SRP012000/SRS629125/SRX575182/SRR1346495/SRR1346495.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATIVW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATIVW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATJES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJES-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJES-09A-01D	DNA	EFO	SRS635584	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJES-09A-01D A41916 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41916	SRX593403	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJES-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATJES-09A-01D A41916 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41916_1_lane_dupsFlagged.bam	SRR1385886	@dbgap@:reads/SRP012000/SRS635584/SRX593403/SRR1385886/SRR1385886.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJES-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJES-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-02D	DNA	EFO	SRS628896	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJHJ-09A-02D A32312 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32312	SRX574952	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJHJ-09A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATJHJ-09A-02D A32312 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32312_1_lane_dupsFlagged.bam	SRR1346144	@dbgap@:reads/SRP012000/SRS628896/SRX574952/SRR1346144/SRR1346144.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJHJ-09A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJHJ-09A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-03D	DNA	EFO	SRS637543	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJHJ-40A-03D A42747 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	348	A42747	SRX597981	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJHJ-40A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATJHJ-40A-03D A42747 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42747_1_lane_dupsFlagged.bam	SRR1395295	@dbgap@:reads/SRP012000/SRS637543/SRX597981/SRR1395295/SRR1395295.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJHJ-40A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJHJ-40A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATJIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJIC-09A-01D	DNA	EFO	SRS635441	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJIC-09A-01D A41713 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41713	SRX593163	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJIC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJIC-09A-01D A41713 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41713_1_lane_dupsFlagged.bam	SRR1385634	@dbgap@:reads/SRP012000/SRS635441/SRX593163/SRR1385634/SRR1385634.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJIC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJIC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATJIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJIC-09A-01D	DNA	EFO	SRS635441	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJIC-09A-01D A41713 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41713	SRX593163	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJIC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJIC-09A-01D A41713 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41713_1_lane_dupsFlagged.bam	SRR1385634	@dbgap@:reads/SRP012000/SRS635441/SRX593163/SRR1385634/SRR1385634.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJIC-09A-01D_TARGET-20-PATJIC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJIC-09A-01D	DNA	EFO	SRS635441	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJIC-09A-01D A41713 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41713	SRX593163	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJIC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJIC-09A-01D A41713 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41713_1_lane_dupsFlagged.bam	SRR1385634	@dbgap@:reads/SRP012000/SRS635441/SRX593163/SRR1385634/SRR1385634.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJIC-09A-01D_TARGET-20-PATJIC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJIC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJIC-14A-01D	DNA	EFO	SRS635899	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJIC-14A-01D A42539 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42539	SRX593860	"Specific Capture analysis of normal sample TARGET-20-PATJIC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATJIC-14A-01D A42539 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42539_1_lane_dupsFlagged.bam	SRR1386359	@dbgap@:reads/SRP012000/SRS635899/SRX593860/SRR1386359/SRR1386359.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJIC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJIC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATJIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJIC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJIC-14A-01D	DNA	EFO	SRS635899	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJIC-14A-01D A42539 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42539	SRX593860	"Specific Capture analysis of normal sample TARGET-20-PATJIC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATJIC-14A-01D A42539 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42539_1_lane_dupsFlagged.bam	SRR1386359	@dbgap@:reads/SRP012000/SRS635899/SRX593860/SRR1386359/SRR1386359.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJIC-09A-01D_TARGET-20-PATJIC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJIC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJIC-14A-01D	DNA	EFO	SRS635899	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJIC-14A-01D A42539 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42539	SRX593860	"Specific Capture analysis of normal sample TARGET-20-PATJIC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATJIC-14A-01D A42539 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42539_1_lane_dupsFlagged.bam	SRR1386359	@dbgap@:reads/SRP012000/SRS635899/SRX593860/SRR1386359/SRR1386359.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJIC-09A-01D_TARGET-20-PATJIC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJKC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJKC-04A-01D	DNA	EFO	SRS637328	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJKC-04A-01D A42261 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42261	SRX597708	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJKC-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATJKC-04A-01D A42261 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42261_1_lane_dupsFlagged.bam	SRR1395037	@dbgap@:reads/SRP012000/SRS637328/SRX597708/SRR1395037/SRR1395037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJKC-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJKC-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATJKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJKC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJKC-04A-01D	DNA	EFO	SRS637328	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJKC-04A-01D A42261 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42261	SRX597708	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJKC-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATJKC-04A-01D A42261 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42261_1_lane_dupsFlagged.bam	SRR1395037	@dbgap@:reads/SRP012000/SRS637328/SRX597708/SRR1395037/SRR1395037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJKC-04A-01D_TARGET-20-PATJKC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJKC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJKC-04A-01D	DNA	EFO	SRS637328	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJKC-04A-01D A42261 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42261	SRX597708	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJKC-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATJKC-04A-01D A42261 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42261_1_lane_dupsFlagged.bam	SRR1395037	@dbgap@:reads/SRP012000/SRS637328/SRX597708/SRR1395037/SRR1395037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJKC-04A-01D_TARGET-20-PATJKC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJKC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJKC-09A-01D	DNA	EFO	SRS629157	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJKC-09A-01D A33328 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33328	SRX575212	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJKC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATJKC-09A-01D A33328 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33328_1_lane_dupsFlagged.bam	SRR1346425	@dbgap@:reads/SRP012000/SRS629157/SRX575212/SRR1346425/SRR1346425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJKC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJKC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATJKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJKC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJKC-09A-01D	DNA	EFO	SRS629157	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJKC-09A-01D A33328 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33328	SRX575212	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJKC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATJKC-09A-01D A33328 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33328_1_lane_dupsFlagged.bam	SRR1346425	@dbgap@:reads/SRP012000/SRS629157/SRX575212/SRR1346425/SRR1346425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJKC-09A-01D_TARGET-20-PATJKC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJKC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJKC-09A-01D	DNA	EFO	SRS629157	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJKC-09A-01D A33328 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33328	SRX575212	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJKC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATJKC-09A-01D A33328 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33328_1_lane_dupsFlagged.bam	SRR1346425	@dbgap@:reads/SRP012000/SRS629157/SRX575212/SRR1346425/SRR1346425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJKC-09A-01D_TARGET-20-PATJKC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJKC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJKC-14A-01D	DNA	EFO	SRS637453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJKC-14A-01D A42940 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42940	SRX597870	"Specific Capture analysis of normal sample TARGET-20-PATJKC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATJKC-14A-01D A42940 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42940_1_lane_dupsFlagged.bam	SRR1395189	@dbgap@:reads/SRP012000/SRS637453/SRX597870/SRR1395189/SRR1395189.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJKC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJKC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATJKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJKC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJKC-14A-01D	DNA	EFO	SRS637453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJKC-14A-01D A42940 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42940	SRX597870	"Specific Capture analysis of normal sample TARGET-20-PATJKC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATJKC-14A-01D A42940 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42940_1_lane_dupsFlagged.bam	SRR1395189	@dbgap@:reads/SRP012000/SRS637453/SRX597870/SRR1395189/SRR1395189.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJKC-04A-01D_TARGET-20-PATJKC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJKC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJKC-14A-01D	DNA	EFO	SRS637453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJKC-14A-01D A42940 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42940	SRX597870	"Specific Capture analysis of normal sample TARGET-20-PATJKC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATJKC-14A-01D A42940 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42940_1_lane_dupsFlagged.bam	SRR1395189	@dbgap@:reads/SRP012000/SRS637453/SRX597870/SRR1395189/SRR1395189.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJKC-04A-01D_TARGET-20-PATJKC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJKC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJKC-14A-01D	DNA	EFO	SRS637453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJKC-14A-01D A42940 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42940	SRX597870	"Specific Capture analysis of normal sample TARGET-20-PATJKC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATJKC-14A-01D A42940 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42940_1_lane_dupsFlagged.bam	SRR1395189	@dbgap@:reads/SRP012000/SRS637453/SRX597870/SRR1395189/SRR1395189.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJKC-09A-01D_TARGET-20-PATJKC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJKC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJKC-14A-01D	DNA	EFO	SRS637453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJKC-14A-01D A42940 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42940	SRX597870	"Specific Capture analysis of normal sample TARGET-20-PATJKC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATJKC-14A-01D A42940 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42940_1_lane_dupsFlagged.bam	SRR1395189	@dbgap@:reads/SRP012000/SRS637453/SRX597870/SRR1395189/SRR1395189.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJKC-09A-01D_TARGET-20-PATJKC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJLP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJLP-09A-01D	DNA	EFO	SRS633924	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJLP-09A-01D A41503 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41503	SRX588529	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJLP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJLP-09A-01D A41503 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41503_1_lane_dupsFlagged.bam	SRR1374833	@dbgap@:reads/SRP012000/SRS633924/SRX588529/SRR1374833/SRR1374833.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJLP-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJLP-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATJLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJLP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJLP-09A-01D	DNA	EFO	SRS633924	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJLP-09A-01D A41503 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41503	SRX588529	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJLP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJLP-09A-01D A41503 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41503_1_lane_dupsFlagged.bam	SRR1374833	@dbgap@:reads/SRP012000/SRS633924/SRX588529/SRR1374833/SRR1374833.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJLP-09A-01D_TARGET-20-PATJLP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJLP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJLP-09A-01D	DNA	EFO	SRS633924	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJLP-09A-01D A41503 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41503	SRX588529	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJLP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJLP-09A-01D A41503 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41503_1_lane_dupsFlagged.bam	SRR1374833	@dbgap@:reads/SRP012000/SRS633924/SRX588529/SRR1374833/SRR1374833.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJLP-09A-01D_TARGET-20-PATJLP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJLP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJLP-14A-01D	DNA	EFO	SRS635977	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJLP-14A-01D A42634 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42634	SRX593939	"Specific Capture analysis of normal sample TARGET-20-PATJLP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATJLP-14A-01D A42634 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42634_1_lane_dupsFlagged.bam	SRR1386417	@dbgap@:reads/SRP012000/SRS635977/SRX593939/SRR1386417/SRR1386417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJLP-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJLP-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATJLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJLP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJLP-14A-01D	DNA	EFO	SRS635977	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJLP-14A-01D A42634 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42634	SRX593939	"Specific Capture analysis of normal sample TARGET-20-PATJLP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATJLP-14A-01D A42634 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42634_1_lane_dupsFlagged.bam	SRR1386417	@dbgap@:reads/SRP012000/SRS635977/SRX593939/SRR1386417/SRR1386417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJLP-09A-01D_TARGET-20-PATJLP-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJLP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJLP-14A-01D	DNA	EFO	SRS635977	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJLP-14A-01D A42634 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42634	SRX593939	"Specific Capture analysis of normal sample TARGET-20-PATJLP-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATJLP-14A-01D A42634 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42634_1_lane_dupsFlagged.bam	SRR1386417	@dbgap@:reads/SRP012000/SRS635977/SRX593939/SRR1386417/SRR1386417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJLP-09A-01D_TARGET-20-PATJLP-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJMY-09A-01D	DNA	EFO	SRS628308	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJMY-09A-01D A31199 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31199	SRX573375	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJMY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATJMY-09A-01D A31199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31199_1_lane_dupsFlagged.bam	SRR1342630	@dbgap@:reads/SRP012000/SRS628308/SRX573375/SRR1342630/SRR1342630.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJMY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJMY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJMY-09A-01D	DNA	EFO	SRS628308	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJMY-09A-01D A31199 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31199	SRX573375	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJMY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATJMY-09A-01D A31199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31199_1_lane_dupsFlagged.bam	SRR1342630	@dbgap@:reads/SRP012000/SRS628308/SRX573375/SRR1342630/SRR1342630.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJMY-09A-01D_TARGET-20-PATJMY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJMY-09A-01D	DNA	EFO	SRS628308	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJMY-09A-01D A31199 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31199	SRX573375	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJMY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATJMY-09A-01D A31199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31199_1_lane_dupsFlagged.bam	SRR1342630	@dbgap@:reads/SRP012000/SRS628308/SRX573375/SRR1342630/SRR1342630.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJMY-09A-01D_TARGET-20-PATJMY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJMY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJMY-14A-01D	DNA	EFO	SRS635722	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJMY-14A-01D A42295 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42295	SRX593549	"Specific Capture analysis of normal sample TARGET-20-PATJMY-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATJMY-14A-01D A42295 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42295_1_lane_dupsFlagged.bam	SRR1386052	@dbgap@:reads/SRP012000/SRS635722/SRX593549/SRR1386052/SRR1386052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJMY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJMY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJMY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJMY-14A-01D	DNA	EFO	SRS635722	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJMY-14A-01D A42295 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42295	SRX593549	"Specific Capture analysis of normal sample TARGET-20-PATJMY-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATJMY-14A-01D A42295 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42295_1_lane_dupsFlagged.bam	SRR1386052	@dbgap@:reads/SRP012000/SRS635722/SRX593549/SRR1386052/SRR1386052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJMY-09A-01D_TARGET-20-PATJMY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJMY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJMY-14A-01D	DNA	EFO	SRS635722	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJMY-14A-01D A42295 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42295	SRX593549	"Specific Capture analysis of normal sample TARGET-20-PATJMY-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATJMY-14A-01D A42295 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42295_1_lane_dupsFlagged.bam	SRR1386052	@dbgap@:reads/SRP012000/SRS635722/SRX593549/SRR1386052/SRR1386052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJMY-09A-01D_TARGET-20-PATJMY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJNI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJNI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJNI-09A-01D	DNA	EFO	SRS633900	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJNI-09A-01D A41505 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41505	SRX588504	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJNI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJNI-09A-01D A41505 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41505_1_lane_dupsFlagged.bam	SRR1374891	@dbgap@:reads/SRP012000/SRS633900/SRX588504/SRR1374891/SRR1374891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJNI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJNI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATJNI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJNI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJNI-09A-01D	DNA	EFO	SRS633900	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJNI-09A-01D A41505 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41505	SRX588504	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJNI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJNI-09A-01D A41505 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41505_1_lane_dupsFlagged.bam	SRR1374891	@dbgap@:reads/SRP012000/SRS633900/SRX588504/SRR1374891/SRR1374891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJNI-09A-01D_TARGET-20-PATJNI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJNI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJNI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJNI-09A-01D	DNA	EFO	SRS633900	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJNI-09A-01D A41505 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41505	SRX588504	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJNI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJNI-09A-01D A41505 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41505_1_lane_dupsFlagged.bam	SRR1374891	@dbgap@:reads/SRP012000/SRS633900/SRX588504/SRR1374891/SRR1374891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJNI-09A-01D_TARGET-20-PATJNI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJNI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJNI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJNI-14A-01D	DNA	EFO	SRS635735	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJNI-14A-01D A42323 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42323	SRX593567	"Specific Capture analysis of normal sample TARGET-20-PATJNI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATJNI-14A-01D A42323 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42323_1_lane_dupsFlagged.bam	SRR1386038	@dbgap@:reads/SRP012000/SRS635735/SRX593567/SRR1386038/SRR1386038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJNI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJNI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATJNI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJNI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJNI-14A-01D	DNA	EFO	SRS635735	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJNI-14A-01D A42323 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42323	SRX593567	"Specific Capture analysis of normal sample TARGET-20-PATJNI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATJNI-14A-01D A42323 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42323_1_lane_dupsFlagged.bam	SRR1386038	@dbgap@:reads/SRP012000/SRS635735/SRX593567/SRR1386038/SRR1386038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJNI-09A-01D_TARGET-20-PATJNI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJNI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJNI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJNI-14A-01D	DNA	EFO	SRS635735	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJNI-14A-01D A42323 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42323	SRX593567	"Specific Capture analysis of normal sample TARGET-20-PATJNI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATJNI-14A-01D A42323 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42323_1_lane_dupsFlagged.bam	SRR1386038	@dbgap@:reads/SRP012000/SRS635735/SRX593567/SRR1386038/SRR1386038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJNI-09A-01D_TARGET-20-PATJNI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJPY-09A-01D	DNA	EFO	SRS633960	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJPY-09A-01D A41504 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41504	SRX588567	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJPY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJPY-09A-01D A41504 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41504_1_lane_dupsFlagged.bam	SRR1374836	@dbgap@:reads/SRP012000/SRS633960/SRX588567/SRR1374836/SRR1374836.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJPY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJPY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATJPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJPY-09A-01D	DNA	EFO	SRS633960	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJPY-09A-01D A41504 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41504	SRX588567	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJPY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJPY-09A-01D A41504 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41504_1_lane_dupsFlagged.bam	SRR1374836	@dbgap@:reads/SRP012000/SRS633960/SRX588567/SRR1374836/SRR1374836.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJPY-09A-01D_TARGET-20-PATJPY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJPY-09A-01D	DNA	EFO	SRS633960	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJPY-09A-01D A41504 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41504	SRX588567	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJPY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJPY-09A-01D A41504 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41504_1_lane_dupsFlagged.bam	SRR1374836	@dbgap@:reads/SRP012000/SRS633960/SRX588567/SRR1374836/SRR1374836.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJPY-09A-01D_TARGET-20-PATJPY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJPY-14A-01D	DNA	EFO	SRS635743	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJPY-14A-01D A42324 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42324	SRX593575	"Specific Capture analysis of normal sample TARGET-20-PATJPY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATJPY-14A-01D A42324 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42324_1_lane_dupsFlagged.bam	SRR1386102	@dbgap@:reads/SRP012000/SRS635743/SRX593575/SRR1386102/SRR1386102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJPY-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJPY-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATJPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJPY-14A-01D	DNA	EFO	SRS635743	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJPY-14A-01D A42324 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42324	SRX593575	"Specific Capture analysis of normal sample TARGET-20-PATJPY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATJPY-14A-01D A42324 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42324_1_lane_dupsFlagged.bam	SRR1386102	@dbgap@:reads/SRP012000/SRS635743/SRX593575/SRR1386102/SRR1386102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJPY-09A-01D_TARGET-20-PATJPY-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJPY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJPY-14A-01D	DNA	EFO	SRS635743	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJPY-14A-01D A42324 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42324	SRX593575	"Specific Capture analysis of normal sample TARGET-20-PATJPY-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATJPY-14A-01D A42324 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42324_1_lane_dupsFlagged.bam	SRR1386102	@dbgap@:reads/SRP012000/SRS635743/SRX593575/SRR1386102/SRR1386102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJPY-09A-01D_TARGET-20-PATJPY-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJUT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJUT-09A-01D	DNA	EFO	SRS633897	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJUT-09A-01D A41506 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41506	SRX588501	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJUT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJUT-09A-01D A41506 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41506_1_lane_dupsFlagged.bam	SRR1374912	@dbgap@:reads/SRP012000/SRS633897/SRX588501/SRR1374912/SRR1374912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJUT-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJUT-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATJUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJUT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJUT-09A-01D	DNA	EFO	SRS633897	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJUT-09A-01D A41506 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41506	SRX588501	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJUT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJUT-09A-01D A41506 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41506_1_lane_dupsFlagged.bam	SRR1374912	@dbgap@:reads/SRP012000/SRS633897/SRX588501/SRR1374912/SRR1374912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJUT-09A-01D_TARGET-20-PATJUT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJUT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJUT-09A-01D	DNA	EFO	SRS633897	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJUT-09A-01D A41506 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41506	SRX588501	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJUT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJUT-09A-01D A41506 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41506_1_lane_dupsFlagged.bam	SRR1374912	@dbgap@:reads/SRP012000/SRS633897/SRX588501/SRR1374912/SRR1374912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJUT-09A-01D_TARGET-20-PATJUT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJUT-14A-01D	DNA	EFO	SRS635997	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJUT-14A-01D A42622 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42622	SRX593962	"Specific Capture analysis of normal sample TARGET-20-PATJUT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATJUT-14A-01D A42622 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42622_1_lane_dupsFlagged.bam	SRR1386467	@dbgap@:reads/SRP012000/SRS635997/SRX593962/SRR1386467/SRR1386467.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJUT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJUT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATJUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJUT-14A-01D	DNA	EFO	SRS635997	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJUT-14A-01D A42622 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42622	SRX593962	"Specific Capture analysis of normal sample TARGET-20-PATJUT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATJUT-14A-01D A42622 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42622_1_lane_dupsFlagged.bam	SRR1386467	@dbgap@:reads/SRP012000/SRS635997/SRX593962/SRR1386467/SRR1386467.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJUT-09A-01D_TARGET-20-PATJUT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJUT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJUT-14A-01D	DNA	EFO	SRS635997	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJUT-14A-01D A42622 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42622	SRX593962	"Specific Capture analysis of normal sample TARGET-20-PATJUT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATJUT-14A-01D A42622 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42622_1_lane_dupsFlagged.bam	SRR1386467	@dbgap@:reads/SRP012000/SRS635997/SRX593962/SRR1386467/SRR1386467.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJUT-09A-01D_TARGET-20-PATJUT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJWG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJWG-09A-01D	DNA	EFO	SRS635465	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJWG-09A-01D A41714 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41714	SRX593187	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJWG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJWG-09A-01D A41714 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41714_1_lane_dupsFlagged.bam	SRR1385594	@dbgap@:reads/SRP012000/SRS635465/SRX593187/SRR1385594/SRR1385594.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJWG-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJWG-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATJWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJWG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJWG-09A-01D	DNA	EFO	SRS635465	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJWG-09A-01D A41714 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41714	SRX593187	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJWG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJWG-09A-01D A41714 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41714_1_lane_dupsFlagged.bam	SRR1385594	@dbgap@:reads/SRP012000/SRS635465/SRX593187/SRR1385594/SRR1385594.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJWG-09A-01D_TARGET-20-PATJWG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJWG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJWG-09A-01D	DNA	EFO	SRS635465	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJWG-09A-01D A41714 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41714	SRX593187	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJWG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJWG-09A-01D A41714 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41714_1_lane_dupsFlagged.bam	SRR1385594	@dbgap@:reads/SRP012000/SRS635465/SRX593187/SRR1385594/SRR1385594.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJWG-09A-01D_TARGET-20-PATJWG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJWG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJWG-14A-01D	DNA	EFO	SRS635669	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJWG-14A-01D A41702 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41702	SRX593493	"Specific Capture analysis of normal sample TARGET-20-PATJWG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJWG-14A-01D A41702 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41702_1_lane_dupsFlagged.bam	SRR1385932	@dbgap@:reads/SRP012000/SRS635669/SRX593493/SRR1385932/SRR1385932.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJWG-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJWG-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATJWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJWG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJWG-14A-01D	DNA	EFO	SRS635669	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJWG-14A-01D A41702 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41702	SRX593493	"Specific Capture analysis of normal sample TARGET-20-PATJWG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJWG-14A-01D A41702 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41702_1_lane_dupsFlagged.bam	SRR1385932	@dbgap@:reads/SRP012000/SRS635669/SRX593493/SRR1385932/SRR1385932.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJWG-09A-01D_TARGET-20-PATJWG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJWG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJWG-14A-01D	DNA	EFO	SRS635669	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJWG-14A-01D A41702 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41702	SRX593493	"Specific Capture analysis of normal sample TARGET-20-PATJWG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJWG-14A-01D A41702 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41702_1_lane_dupsFlagged.bam	SRR1385932	@dbgap@:reads/SRP012000/SRS635669/SRX593493/SRR1385932/SRR1385932.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJWG-09A-01D_TARGET-20-PATJWG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJWN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJWN-04A-01D	DNA	EFO	SRS637343	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJWN-04A-01D A42193 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42193	SRX597735	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJWN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATJWN-04A-01D A42193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42193_1_lane_dupsFlagged.bam	SRR1394954	@dbgap@:reads/SRP012000/SRS637343/SRX597735/SRR1394954/SRR1394954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJWN-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJWN-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATJWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJWN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJWN-04A-01D	DNA	EFO	SRS637343	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJWN-04A-01D A42193 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42193	SRX597735	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJWN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATJWN-04A-01D A42193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42193_1_lane_dupsFlagged.bam	SRR1394954	@dbgap@:reads/SRP012000/SRS637343/SRX597735/SRR1394954/SRR1394954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJWN-04A-01D_TARGET-20-PATJWN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJWN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJWN-04A-01D	DNA	EFO	SRS637343	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJWN-04A-01D A42193 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42193	SRX597735	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJWN-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATJWN-04A-01D A42193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42193_1_lane_dupsFlagged.bam	SRR1394954	@dbgap@:reads/SRP012000/SRS637343/SRX597735/SRR1394954/SRR1394954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJWN-04A-01D_TARGET-20-PATJWN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJWN-09A-01D	DNA	EFO	SRS635438	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJWN-09A-01D A41715 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41715	SRX593160	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJWN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJWN-09A-01D A41715 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41715_1_lane_dupsFlagged.bam	SRR1385640	@dbgap@:reads/SRP012000/SRS635438/SRX593160/SRR1385640/SRR1385640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJWN-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJWN-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATJWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJWN-09A-01D	DNA	EFO	SRS635438	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJWN-09A-01D A41715 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41715	SRX593160	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJWN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJWN-09A-01D A41715 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41715_1_lane_dupsFlagged.bam	SRR1385640	@dbgap@:reads/SRP012000/SRS635438/SRX593160/SRR1385640/SRR1385640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJWN-09A-01D_TARGET-20-PATJWN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJWN-09A-01D	DNA	EFO	SRS635438	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJWN-09A-01D A41715 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41715	SRX593160	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJWN-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATJWN-09A-01D A41715 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41715_1_lane_dupsFlagged.bam	SRR1385640	@dbgap@:reads/SRP012000/SRS635438/SRX593160/SRR1385640/SRR1385640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJWN-09A-01D_TARGET-20-PATJWN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJWN-14A-01D	DNA	EFO	SRS637471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJWN-14A-01D A42937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42937	SRX597891	"Specific Capture analysis of normal sample TARGET-20-PATJWN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATJWN-14A-01D A42937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42937_1_lane_dupsFlagged.bam	SRR1395203	@dbgap@:reads/SRP012000/SRS637471/SRX597891/SRR1395203/SRR1395203.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJWN-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJWN-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATJWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJWN-14A-01D	DNA	EFO	SRS637471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJWN-14A-01D A42937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42937	SRX597891	"Specific Capture analysis of normal sample TARGET-20-PATJWN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATJWN-14A-01D A42937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42937_1_lane_dupsFlagged.bam	SRR1395203	@dbgap@:reads/SRP012000/SRS637471/SRX597891/SRR1395203/SRR1395203.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJWN-04A-01D_TARGET-20-PATJWN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJWN-14A-01D	DNA	EFO	SRS637471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJWN-14A-01D A42937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42937	SRX597891	"Specific Capture analysis of normal sample TARGET-20-PATJWN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATJWN-14A-01D A42937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42937_1_lane_dupsFlagged.bam	SRR1395203	@dbgap@:reads/SRP012000/SRS637471/SRX597891/SRR1395203/SRR1395203.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJWN-04A-01D_TARGET-20-PATJWN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJWN-14A-01D	DNA	EFO	SRS637471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJWN-14A-01D A42937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42937	SRX597891	"Specific Capture analysis of normal sample TARGET-20-PATJWN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATJWN-14A-01D A42937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42937_1_lane_dupsFlagged.bam	SRR1395203	@dbgap@:reads/SRP012000/SRS637471/SRX597891/SRR1395203/SRR1395203.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJWN-09A-01D_TARGET-20-PATJWN-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJWN-14A-01D	DNA	EFO	SRS637471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJWN-14A-01D A42937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42937	SRX597891	"Specific Capture analysis of normal sample TARGET-20-PATJWN-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATJWN-14A-01D A42937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42937_1_lane_dupsFlagged.bam	SRR1395203	@dbgap@:reads/SRP012000/SRS637471/SRX597891/SRR1395203/SRR1395203.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJWN-09A-01D_TARGET-20-PATJWN-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJXZ-03A-01D	DNA	EFO	SRS629153	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJXZ-03A-01D A33330 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33330	SRX575210	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJXZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATJXZ-03A-01D A33330 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33330_1_lane_dupsFlagged.bam	SRR1346455	@dbgap@:reads/SRP012000/SRS629153/SRX575210/SRR1346455/SRR1346455.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJXZ-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJXZ-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATJXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJXZ-03A-01D	DNA	EFO	SRS629153	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJXZ-03A-01D A33330 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33330	SRX575210	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJXZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATJXZ-03A-01D A33330 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33330_1_lane_dupsFlagged.bam	SRR1346455	@dbgap@:reads/SRP012000/SRS629153/SRX575210/SRR1346455/SRR1346455.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJXZ-03A-01D_TARGET-20-PATJXZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJXZ-03A-01D	DNA	EFO	SRS629153	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJXZ-03A-01D A33330 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33330	SRX575210	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJXZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATJXZ-03A-01D A33330 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33330_1_lane_dupsFlagged.bam	SRR1346455	@dbgap@:reads/SRP012000/SRS629153/SRX575210/SRR1346455/SRR1346455.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJXZ-03A-01D_TARGET-20-PATJXZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJXZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJXZ-04A-01D	DNA	EFO	SRS637344	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJXZ-04A-01D A42237 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42237	SRX597737	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJXZ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATJXZ-04A-01D A42237 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42237_1_lane_dupsFlagged.bam	SRR1395011	@dbgap@:reads/SRP012000/SRS637344/SRX597737/SRR1395011/SRR1395011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJXZ-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJXZ-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATJXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJXZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJXZ-04A-01D	DNA	EFO	SRS637344	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJXZ-04A-01D A42237 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42237	SRX597737	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJXZ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATJXZ-04A-01D A42237 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42237_1_lane_dupsFlagged.bam	SRR1395011	@dbgap@:reads/SRP012000/SRS637344/SRX597737/SRR1395011/SRR1395011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJXZ-04A-01D_TARGET-20-PATJXZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJXZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJXZ-04A-01D	DNA	EFO	SRS637344	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJXZ-04A-01D A42237 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42237	SRX597737	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJXZ-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATJXZ-04A-01D A42237 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42237_1_lane_dupsFlagged.bam	SRR1395011	@dbgap@:reads/SRP012000/SRS637344/SRX597737/SRR1395011/SRR1395011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJXZ-04A-01D_TARGET-20-PATJXZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJXZ-14A-01D	DNA	EFO	SRS637463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJXZ-14A-01D A42938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42938	SRX597882	"Specific Capture analysis of normal sample TARGET-20-PATJXZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATJXZ-14A-01D A42938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42938_1_lane_dupsFlagged.bam	SRR1395204	@dbgap@:reads/SRP012000/SRS637463/SRX597882/SRR1395204/SRR1395204.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJXZ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJXZ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATJXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJXZ-14A-01D	DNA	EFO	SRS637463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJXZ-14A-01D A42938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42938	SRX597882	"Specific Capture analysis of normal sample TARGET-20-PATJXZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATJXZ-14A-01D A42938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42938_1_lane_dupsFlagged.bam	SRR1395204	@dbgap@:reads/SRP012000/SRS637463/SRX597882/SRR1395204/SRR1395204.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJXZ-03A-01D_TARGET-20-PATJXZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJXZ-14A-01D	DNA	EFO	SRS637463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJXZ-14A-01D A42938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42938	SRX597882	"Specific Capture analysis of normal sample TARGET-20-PATJXZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATJXZ-14A-01D A42938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42938_1_lane_dupsFlagged.bam	SRR1395204	@dbgap@:reads/SRP012000/SRS637463/SRX597882/SRR1395204/SRR1395204.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJXZ-03A-01D_TARGET-20-PATJXZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJXZ-14A-01D	DNA	EFO	SRS637463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJXZ-14A-01D A42938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42938	SRX597882	"Specific Capture analysis of normal sample TARGET-20-PATJXZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATJXZ-14A-01D A42938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42938_1_lane_dupsFlagged.bam	SRR1395204	@dbgap@:reads/SRP012000/SRS637463/SRX597882/SRR1395204/SRR1395204.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJXZ-04A-01D_TARGET-20-PATJXZ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJXZ-14A-01D	DNA	EFO	SRS637463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJXZ-14A-01D A42938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42938	SRX597882	"Specific Capture analysis of normal sample TARGET-20-PATJXZ-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATJXZ-14A-01D A42938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42938_1_lane_dupsFlagged.bam	SRR1395204	@dbgap@:reads/SRP012000/SRS637463/SRX597882/SRR1395204/SRR1395204.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJXZ-04A-01D_TARGET-20-PATJXZ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJYT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJYT-03A-01D	DNA	EFO	SRS629123	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJYT-03A-01D A33329 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33329	SRX575179	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJYT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATJYT-03A-01D A33329 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33329_1_lane_dupsFlagged.bam	SRR1346438	@dbgap@:reads/SRP012000/SRS629123/SRX575179/SRR1346438/SRR1346438.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJYT-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJYT-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATJYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJYT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJYT-03A-01D	DNA	EFO	SRS629123	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJYT-03A-01D A33329 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33329	SRX575179	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJYT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATJYT-03A-01D A33329 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33329_1_lane_dupsFlagged.bam	SRR1346438	@dbgap@:reads/SRP012000/SRS629123/SRX575179/SRR1346438/SRR1346438.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJYT-03A-01D_TARGET-20-PATJYT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJYT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJYT-03A-01D	DNA	EFO	SRS629123	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJYT-03A-01D A33329 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33329	SRX575179	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATJYT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATJYT-03A-01D A33329 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33329_1_lane_dupsFlagged.bam	SRR1346438	@dbgap@:reads/SRP012000/SRS629123/SRX575179/SRR1346438/SRR1346438.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJYT-03A-01D_TARGET-20-PATJYT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATJYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJYT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJYT-14A-01D	DNA	EFO	SRS636024	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJYT-14A-01D A42591 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42591	SRX594000	"Specific Capture analysis of normal sample TARGET-20-PATJYT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATJYT-14A-01D A42591 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42591_1_lane_dupsFlagged.bam	SRR1386427	@dbgap@:reads/SRP012000/SRS636024/SRX594000/SRR1386427/SRR1386427.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATJYT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATJYT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATJYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJYT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJYT-14A-01D	DNA	EFO	SRS636024	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJYT-14A-01D A42591 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42591	SRX594000	"Specific Capture analysis of normal sample TARGET-20-PATJYT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATJYT-14A-01D A42591 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42591_1_lane_dupsFlagged.bam	SRR1386427	@dbgap@:reads/SRP012000/SRS636024/SRX594000/SRR1386427/SRR1386427.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJYT-03A-01D_TARGET-20-PATJYT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATJYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATJYT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJYT-14A-01D	DNA	EFO	SRS636024	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJYT-14A-01D A42591 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42591	SRX594000	"Specific Capture analysis of normal sample TARGET-20-PATJYT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATJYT-14A-01D A42591 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42591_1_lane_dupsFlagged.bam	SRR1386427	@dbgap@:reads/SRP012000/SRS636024/SRX594000/SRR1386427/SRR1386427.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATJYT-03A-01D_TARGET-20-PATJYT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKAH-09A-01D	DNA	EFO	SRS629127	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKAH-09A-01D A33331 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33331	SRX575183	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKAH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATKAH-09A-01D A33331 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33331_1_lane_dupsFlagged.bam	SRR1346434	@dbgap@:reads/SRP012000/SRS629127/SRX575183/SRR1346434/SRR1346434.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKAH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKAH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATKAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKAH-09A-01D	DNA	EFO	SRS629127	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKAH-09A-01D A33331 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33331	SRX575183	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKAH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATKAH-09A-01D A33331 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33331_1_lane_dupsFlagged.bam	SRR1346434	@dbgap@:reads/SRP012000/SRS629127/SRX575183/SRR1346434/SRR1346434.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKAH-09A-01D_TARGET-20-PATKAH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKAH-09A-01D	DNA	EFO	SRS629127	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKAH-09A-01D A33331 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33331	SRX575183	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKAH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATKAH-09A-01D A33331 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33331_1_lane_dupsFlagged.bam	SRR1346434	@dbgap@:reads/SRP012000/SRS629127/SRX575183/SRR1346434/SRR1346434.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKAH-09A-01D_TARGET-20-PATKAH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKAH-14A-01D	DNA	EFO	SRS635775	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKAH-14A-01D A42282 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42282	SRX593614	"Specific Capture analysis of normal sample TARGET-20-PATKAH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKAH-14A-01D A42282 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42282_1_lane_dupsFlagged.bam	SRR1386101	@dbgap@:reads/SRP012000/SRS635775/SRX593614/SRR1386101/SRR1386101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKAH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKAH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATKAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKAH-14A-01D	DNA	EFO	SRS635775	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKAH-14A-01D A42282 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42282	SRX593614	"Specific Capture analysis of normal sample TARGET-20-PATKAH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKAH-14A-01D A42282 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42282_1_lane_dupsFlagged.bam	SRR1386101	@dbgap@:reads/SRP012000/SRS635775/SRX593614/SRR1386101/SRR1386101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKAH-09A-01D_TARGET-20-PATKAH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKAH-14A-01D	DNA	EFO	SRS635775	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKAH-14A-01D A42282 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42282	SRX593614	"Specific Capture analysis of normal sample TARGET-20-PATKAH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKAH-14A-01D A42282 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42282_1_lane_dupsFlagged.bam	SRR1386101	@dbgap@:reads/SRP012000/SRS635775/SRX593614/SRR1386101/SRR1386101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKAH-09A-01D_TARGET-20-PATKAH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKBK-03A-01D	DNA	EFO	SRS628980	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKBK-03A-01D A32313 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32313	SRX575036	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKBK-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATKBK-03A-01D A32313 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32313_1_lane_dupsFlagged.bam	SRR1346192	@dbgap@:reads/SRP012000/SRS628980/SRX575036/SRR1346192/SRR1346192.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKBK-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKBK-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKBK-03A-01D	DNA	EFO	SRS628980	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKBK-03A-01D A32313 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32313	SRX575036	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKBK-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATKBK-03A-01D A32313 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32313_1_lane_dupsFlagged.bam	SRR1346192	@dbgap@:reads/SRP012000/SRS628980/SRX575036/SRR1346192/SRR1346192.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKBK-03A-01D_TARGET-20-PATKBK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKBK-03A-01D	DNA	EFO	SRS628980	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKBK-03A-01D A32313 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32313	SRX575036	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKBK-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATKBK-03A-01D A32313 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32313_1_lane_dupsFlagged.bam	SRR1346192	@dbgap@:reads/SRP012000/SRS628980/SRX575036/SRR1346192/SRR1346192.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKBK-03A-01D_TARGET-20-PATKBK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKBK-10A-01D	DNA	EFO	SRS635721	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKBK-10A-01D A42309 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42309	SRX593548	"Specific Capture analysis of normal sample TARGET-20-PATKBK-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATKBK-10A-01D A42309 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42309_1_lane_dupsFlagged.bam	SRR1386026	@dbgap@:reads/SRP012000/SRS635721/SRX593548/SRR1386026/SRR1386026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKBK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKBK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKBK-10A-01D	DNA	EFO	SRS635721	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKBK-10A-01D A42309 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42309	SRX593548	"Specific Capture analysis of normal sample TARGET-20-PATKBK-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATKBK-10A-01D A42309 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42309_1_lane_dupsFlagged.bam	SRR1386026	@dbgap@:reads/SRP012000/SRS635721/SRX593548/SRR1386026/SRR1386026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKBK-03A-01D_TARGET-20-PATKBK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKBK-10A-01D	DNA	EFO	SRS635721	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKBK-10A-01D A42309 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42309	SRX593548	"Specific Capture analysis of normal sample TARGET-20-PATKBK-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATKBK-10A-01D A42309 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42309_1_lane_dupsFlagged.bam	SRR1386026	@dbgap@:reads/SRP012000/SRS635721/SRX593548/SRR1386026/SRR1386026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKBK-03A-01D_TARGET-20-PATKBK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKBT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKBT-03A-01D	DNA	EFO	SRS635568	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKBT-03A-01D A41917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41917	SRX593388	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKBT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATKBT-03A-01D A41917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41917_1_lane_dupsFlagged.bam	SRR1385883	@dbgap@:reads/SRP012000/SRS635568/SRX593388/SRR1385883/SRR1385883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKBT-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKBT-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATKBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKBT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKBT-03A-01D	DNA	EFO	SRS635568	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKBT-03A-01D A41917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41917	SRX593388	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKBT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATKBT-03A-01D A41917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41917_1_lane_dupsFlagged.bam	SRR1385883	@dbgap@:reads/SRP012000/SRS635568/SRX593388/SRR1385883/SRR1385883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKBT-03A-01D_TARGET-20-PATKBT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKBT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKBT-03A-01D	DNA	EFO	SRS635568	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKBT-03A-01D A41917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41917	SRX593388	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKBT-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATKBT-03A-01D A41917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41917_1_lane_dupsFlagged.bam	SRR1385883	@dbgap@:reads/SRP012000/SRS635568/SRX593388/SRR1385883/SRR1385883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKBT-03A-01D_TARGET-20-PATKBT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKBT-14A-01D	DNA	EFO	SRS635995	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKBT-14A-01D A42589 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42589	SRX593961	"Specific Capture analysis of normal sample TARGET-20-PATKBT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATKBT-14A-01D A42589 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42589_1_lane_dupsFlagged.bam	SRR1386486	@dbgap@:reads/SRP012000/SRS635995/SRX593961/SRR1386486/SRR1386486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKBT-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKBT-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATKBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKBT-14A-01D	DNA	EFO	SRS635995	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKBT-14A-01D A42589 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42589	SRX593961	"Specific Capture analysis of normal sample TARGET-20-PATKBT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATKBT-14A-01D A42589 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42589_1_lane_dupsFlagged.bam	SRR1386486	@dbgap@:reads/SRP012000/SRS635995/SRX593961/SRR1386486/SRR1386486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKBT-03A-01D_TARGET-20-PATKBT-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKBT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKBT-14A-01D	DNA	EFO	SRS635995	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKBT-14A-01D A42589 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42589	SRX593961	"Specific Capture analysis of normal sample TARGET-20-PATKBT-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATKBT-14A-01D A42589 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42589_1_lane_dupsFlagged.bam	SRR1386486	@dbgap@:reads/SRP012000/SRS635995/SRX593961/SRR1386486/SRR1386486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKBT-03A-01D_TARGET-20-PATKBT-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKEA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKEA-09A-01D	DNA	EFO	SRS635518	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKEA-09A-01D A41727 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41727	SRX593239	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKEA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PATKEA-09A-01D A41727 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41727_1_lane_dupsFlagged.bam	SRR1385604	@dbgap@:reads/SRP012000/SRS635518/SRX593239/SRR1385604/SRR1385604.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKEA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKEA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATKEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKEA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKEA-09A-01D	DNA	EFO	SRS635518	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKEA-09A-01D A41727 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41727	SRX593239	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKEA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PATKEA-09A-01D A41727 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41727_1_lane_dupsFlagged.bam	SRR1385604	@dbgap@:reads/SRP012000/SRS635518/SRX593239/SRR1385604/SRR1385604.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKEA-09A-01D_TARGET-20-PATKEA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKEA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKEA-09A-01D	DNA	EFO	SRS635518	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKEA-09A-01D A41727 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41727	SRX593239	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKEA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PATKEA-09A-01D A41727 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41727_1_lane_dupsFlagged.bam	SRR1385604	@dbgap@:reads/SRP012000/SRS635518/SRX593239/SRR1385604/SRR1385604.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKEA-09A-01D_TARGET-20-PATKEA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKEA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKEA-14A-01D	DNA	EFO	SRS635724	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKEA-14A-01D A42298 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42298	SRX593550	"Specific Capture analysis of normal sample TARGET-20-PATKEA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKEA-14A-01D A42298 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42298_1_lane_dupsFlagged.bam	SRR1386073	@dbgap@:reads/SRP012000/SRS635724/SRX593550/SRR1386073/SRR1386073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKEA-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKEA-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATKEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKEA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKEA-14A-01D	DNA	EFO	SRS635724	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKEA-14A-01D A42298 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42298	SRX593550	"Specific Capture analysis of normal sample TARGET-20-PATKEA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKEA-14A-01D A42298 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42298_1_lane_dupsFlagged.bam	SRR1386073	@dbgap@:reads/SRP012000/SRS635724/SRX593550/SRR1386073/SRR1386073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKEA-09A-01D_TARGET-20-PATKEA-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKEA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKEA-14A-01D	DNA	EFO	SRS635724	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKEA-14A-01D A42298 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42298	SRX593550	"Specific Capture analysis of normal sample TARGET-20-PATKEA-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKEA-14A-01D A42298 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42298_1_lane_dupsFlagged.bam	SRR1386073	@dbgap@:reads/SRP012000/SRS635724/SRX593550/SRR1386073/SRR1386073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKEA-09A-01D_TARGET-20-PATKEA-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKGM-03A-01D	DNA	EFO	SRS635610	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKGM-03A-01D A41918 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41918	SRX593430	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKGM-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-20-PATKGM-03A-01D A41918 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41918_1_lane_dupsFlagged.bam	SRR1385913	@dbgap@:reads/SRP012000/SRS635610/SRX593430/SRR1385913/SRR1385913.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKGM-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKGM-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATKKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKKI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKKI-04A-01D	DNA	EFO	SRS637315	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKKI-04A-01D A42221 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42221	SRX597682	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKKI-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKKI-04A-01D A42221 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42221_1_lane_dupsFlagged.bam	SRR1394992	@dbgap@:reads/SRP012000/SRS637315/SRX597682/SRR1394992/SRR1394992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKKI-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKKI-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATKKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKKI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKKI-04A-01D	DNA	EFO	SRS637315	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKKI-04A-01D A42221 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42221	SRX597682	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKKI-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKKI-04A-01D A42221 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42221_1_lane_dupsFlagged.bam	SRR1394992	@dbgap@:reads/SRP012000/SRS637315/SRX597682/SRR1394992/SRR1394992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKKI-04A-01D_TARGET-20-PATKKI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKKI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKKI-04A-01D	DNA	EFO	SRS637315	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKKI-04A-01D A42221 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42221	SRX597682	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKKI-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKKI-04A-01D A42221 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42221_1_lane_dupsFlagged.bam	SRR1394992	@dbgap@:reads/SRP012000/SRS637315/SRX597682/SRR1394992/SRR1394992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKKI-04A-01D_TARGET-20-PATKKI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKKI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKKI-09A-01D	DNA	EFO	SRS629182	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKKI-09A-01D A33333 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33333	SRX575238	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKKI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATKKI-09A-01D A33333 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33333_1_lane_dupsFlagged.bam	SRR1346442	@dbgap@:reads/SRP012000/SRS629182/SRX575238/SRR1346442/SRR1346442.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKKI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKKI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATKKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKKI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKKI-09A-01D	DNA	EFO	SRS629182	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKKI-09A-01D A33333 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33333	SRX575238	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKKI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATKKI-09A-01D A33333 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33333_1_lane_dupsFlagged.bam	SRR1346442	@dbgap@:reads/SRP012000/SRS629182/SRX575238/SRR1346442/SRR1346442.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKKI-09A-01D_TARGET-20-PATKKI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKKI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKKI-09A-01D	DNA	EFO	SRS629182	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKKI-09A-01D A33333 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33333	SRX575238	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKKI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATKKI-09A-01D A33333 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33333_1_lane_dupsFlagged.bam	SRR1346442	@dbgap@:reads/SRP012000/SRS629182/SRX575238/SRR1346442/SRR1346442.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKKI-09A-01D_TARGET-20-PATKKI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKKI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKKI-14A-01D	DNA	EFO	SRS635750	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKKI-14A-01D A42283 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42283	SRX593581	"Specific Capture analysis of normal sample TARGET-20-PATKKI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKKI-14A-01D A42283 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42283_1_lane_dupsFlagged.bam	SRR1386079	@dbgap@:reads/SRP012000/SRS635750/SRX593581/SRR1386079/SRR1386079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKKI-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKKI-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATKKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKKI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKKI-14A-01D	DNA	EFO	SRS635750	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKKI-14A-01D A42283 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42283	SRX593581	"Specific Capture analysis of normal sample TARGET-20-PATKKI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKKI-14A-01D A42283 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42283_1_lane_dupsFlagged.bam	SRR1386079	@dbgap@:reads/SRP012000/SRS635750/SRX593581/SRR1386079/SRR1386079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKKI-04A-01D_TARGET-20-PATKKI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKKI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKKI-14A-01D	DNA	EFO	SRS635750	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKKI-14A-01D A42283 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42283	SRX593581	"Specific Capture analysis of normal sample TARGET-20-PATKKI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKKI-14A-01D A42283 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42283_1_lane_dupsFlagged.bam	SRR1386079	@dbgap@:reads/SRP012000/SRS635750/SRX593581/SRR1386079/SRR1386079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKKI-04A-01D_TARGET-20-PATKKI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKKI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKKI-14A-01D	DNA	EFO	SRS635750	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKKI-14A-01D A42283 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42283	SRX593581	"Specific Capture analysis of normal sample TARGET-20-PATKKI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKKI-14A-01D A42283 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42283_1_lane_dupsFlagged.bam	SRR1386079	@dbgap@:reads/SRP012000/SRS635750/SRX593581/SRR1386079/SRR1386079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKKI-09A-01D_TARGET-20-PATKKI-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKKI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKKI-14A-01D	DNA	EFO	SRS635750	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKKI-14A-01D A42283 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42283	SRX593581	"Specific Capture analysis of normal sample TARGET-20-PATKKI-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKKI-14A-01D A42283 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42283_1_lane_dupsFlagged.bam	SRR1386079	@dbgap@:reads/SRP012000/SRS635750/SRX593581/SRR1386079/SRR1386079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKKI-09A-01D_TARGET-20-PATKKI-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKKJ-09A-01D	DNA	EFO	SRS628275	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKKJ-09A-01D A31200 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31200	SRX573330	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKKJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATKKJ-09A-01D A31200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31200_1_lane_dupsFlagged.bam	SRR1342643	@dbgap@:reads/SRP012000/SRS628275/SRX573330/SRR1342643/SRR1342643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKKJ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKKJ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKKJ-09A-01D	DNA	EFO	SRS628275	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKKJ-09A-01D A31200 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31200	SRX573330	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKKJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATKKJ-09A-01D A31200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31200_1_lane_dupsFlagged.bam	SRR1342643	@dbgap@:reads/SRP012000/SRS628275/SRX573330/SRR1342643/SRR1342643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKKJ-09A-01D_TARGET-20-PATKKJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKKJ-09A-01D	DNA	EFO	SRS628275	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKKJ-09A-01D A31200 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31200	SRX573330	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKKJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATKKJ-09A-01D A31200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31200_1_lane_dupsFlagged.bam	SRR1342643	@dbgap@:reads/SRP012000/SRS628275/SRX573330/SRR1342643/SRR1342643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKKJ-09A-01D_TARGET-20-PATKKJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKKJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKKJ-14A-01D	DNA	EFO	SRS635736	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKKJ-14A-01D A42301 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42301	SRX593566	"Specific Capture analysis of normal sample TARGET-20-PATKKJ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATKKJ-14A-01D A42301 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42301_1_lane_dupsFlagged.bam	SRR1386099	@dbgap@:reads/SRP012000/SRS635736/SRX593566/SRR1386099/SRR1386099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKKJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKKJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKKJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKKJ-14A-01D	DNA	EFO	SRS635736	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKKJ-14A-01D A42301 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42301	SRX593566	"Specific Capture analysis of normal sample TARGET-20-PATKKJ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATKKJ-14A-01D A42301 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42301_1_lane_dupsFlagged.bam	SRR1386099	@dbgap@:reads/SRP012000/SRS635736/SRX593566/SRR1386099/SRR1386099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKKJ-09A-01D_TARGET-20-PATKKJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKKJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKKJ-14A-01D	DNA	EFO	SRS635736	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKKJ-14A-01D A42301 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42301	SRX593566	"Specific Capture analysis of normal sample TARGET-20-PATKKJ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATKKJ-14A-01D A42301 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42301_1_lane_dupsFlagged.bam	SRR1386099	@dbgap@:reads/SRP012000/SRS635736/SRX593566/SRR1386099/SRR1386099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKKJ-09A-01D_TARGET-20-PATKKJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKLS-09A-01D	DNA	EFO	SRS633907	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKLS-09A-01D A41507 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41507	SRX588512	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKLS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATKLS-09A-01D A41507 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41507_1_lane_dupsFlagged.bam	SRR1374842	@dbgap@:reads/SRP012000/SRS633907/SRX588512/SRR1374842/SRR1374842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKLS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKLS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATKLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKLS-09A-01D	DNA	EFO	SRS633907	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKLS-09A-01D A41507 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41507	SRX588512	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKLS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATKLS-09A-01D A41507 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41507_1_lane_dupsFlagged.bam	SRR1374842	@dbgap@:reads/SRP012000/SRS633907/SRX588512/SRR1374842/SRR1374842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKLS-09A-01D_TARGET-20-PATKLS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKLS-09A-01D	DNA	EFO	SRS633907	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKLS-09A-01D A41507 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41507	SRX588512	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKLS-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATKLS-09A-01D A41507 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41507_1_lane_dupsFlagged.bam	SRR1374842	@dbgap@:reads/SRP012000/SRS633907/SRX588512/SRR1374842/SRR1374842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKLS-09A-01D_TARGET-20-PATKLS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKLS-14A-01D	DNA	EFO	SRS635673	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKLS-14A-01D A41675 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41675	SRX593497	"Specific Capture analysis of normal sample TARGET-20-PATKLS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATKLS-14A-01D A41675 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41675_1_lane_dupsFlagged.bam	SRR1385946	@dbgap@:reads/SRP012000/SRS635673/SRX593497/SRR1385946/SRR1385946.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKLS-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKLS-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATKLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKLS-14A-01D	DNA	EFO	SRS635673	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKLS-14A-01D A41675 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41675	SRX593497	"Specific Capture analysis of normal sample TARGET-20-PATKLS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATKLS-14A-01D A41675 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41675_1_lane_dupsFlagged.bam	SRR1385946	@dbgap@:reads/SRP012000/SRS635673/SRX593497/SRR1385946/SRR1385946.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKLS-09A-01D_TARGET-20-PATKLS-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKLS-14A-01D	DNA	EFO	SRS635673	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKLS-14A-01D A41675 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41675	SRX593497	"Specific Capture analysis of normal sample TARGET-20-PATKLS-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATKLS-14A-01D A41675 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41675_1_lane_dupsFlagged.bam	SRR1385946	@dbgap@:reads/SRP012000/SRS635673/SRX593497/SRR1385946/SRR1385946.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKLS-09A-01D_TARGET-20-PATKLS-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKMB-09A-01D	DNA	EFO	SRS629161	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKMB-09A-01D A33332 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33332	SRX575217	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKMB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATKMB-09A-01D A33332 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33332_1_lane_dupsFlagged.bam	SRR1346422	@dbgap@:reads/SRP012000/SRS629161/SRX575217/SRR1346422/SRR1346422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKMB-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKMB-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKMB-09A-01D	DNA	EFO	SRS629161	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKMB-09A-01D A33332 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33332	SRX575217	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKMB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATKMB-09A-01D A33332 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33332_1_lane_dupsFlagged.bam	SRR1346422	@dbgap@:reads/SRP012000/SRS629161/SRX575217/SRR1346422/SRR1346422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKMB-09A-01D_TARGET-20-PATKMB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKMB-09A-01D	DNA	EFO	SRS629161	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKMB-09A-01D A33332 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33332	SRX575217	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKMB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATKMB-09A-01D A33332 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33332_1_lane_dupsFlagged.bam	SRR1346422	@dbgap@:reads/SRP012000/SRS629161/SRX575217/SRR1346422/SRR1346422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKMB-09A-01D_TARGET-20-PATKMB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKMB-14A-01D	DNA	EFO	SRS635759	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKMB-14A-01D A42281 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42281	SRX593594	"Specific Capture analysis of normal sample TARGET-20-PATKMB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKMB-14A-01D A42281 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42281_1_lane_dupsFlagged.bam	SRR1386048	@dbgap@:reads/SRP012000/SRS635759/SRX593594/SRR1386048/SRR1386048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKMB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKMB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKMB-14A-01D	DNA	EFO	SRS635759	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKMB-14A-01D A42281 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42281	SRX593594	"Specific Capture analysis of normal sample TARGET-20-PATKMB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKMB-14A-01D A42281 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42281_1_lane_dupsFlagged.bam	SRR1386048	@dbgap@:reads/SRP012000/SRS635759/SRX593594/SRR1386048/SRR1386048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKMB-09A-01D_TARGET-20-PATKMB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKMB-14A-01D	DNA	EFO	SRS635759	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKMB-14A-01D A42281 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42281	SRX593594	"Specific Capture analysis of normal sample TARGET-20-PATKMB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKMB-14A-01D A42281 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42281_1_lane_dupsFlagged.bam	SRR1386048	@dbgap@:reads/SRP012000/SRS635759/SRX593594/SRR1386048/SRR1386048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKMB-09A-01D_TARGET-20-PATKMB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKPC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKPC-09A-01D	DNA	EFO	SRS629168	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKPC-09A-01D A33334 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33334	SRX575224	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKPC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATKPC-09A-01D A33334 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33334_1_lane_dupsFlagged.bam	SRR1346501	@dbgap@:reads/SRP012000/SRS629168/SRX575224/SRR1346501/SRR1346501.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKPC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKPC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATKUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKUG-09A-01D	DNA	EFO	SRS633970	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKUG-09A-01D A41508 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41508	SRX588575	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKUG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATKUG-09A-01D A41508 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41508_1_lane_dupsFlagged.bam	SRR1374868	@dbgap@:reads/SRP012000/SRS633970/SRX588575/SRR1374868/SRR1374868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKUG-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKUG-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKWH-09A-01D	DNA	EFO	SRS628305	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKWH-09A-01D A31222 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31222	SRX573372	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKWH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATKWH-09A-01D A31222 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31222_1_lane_dupsFlagged.bam	SRR1342663	@dbgap@:reads/SRP012000/SRS628305/SRX573372/SRR1342663/SRR1342663.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKWH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKWH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKWH-09A-01D	DNA	EFO	SRS628305	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKWH-09A-01D A31222 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31222	SRX573372	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKWH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATKWH-09A-01D A31222 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31222_1_lane_dupsFlagged.bam	SRR1342663	@dbgap@:reads/SRP012000/SRS628305/SRX573372/SRR1342663/SRR1342663.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKWH-09A-01D_TARGET-20-PATKWH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKWH-09A-01D	DNA	EFO	SRS628305	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKWH-09A-01D A31222 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A31222	SRX573372	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKWH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATKWH-09A-01D A31222 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A31222_1_lane_dupsFlagged.bam	SRR1342663	@dbgap@:reads/SRP012000/SRS628305/SRX573372/SRR1342663/SRR1342663.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKWH-09A-01D_TARGET-20-PATKWH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKWH-14A-01D	DNA	EFO	SRS635785	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKWH-14A-01D A42284 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42284	SRX593627	"Specific Capture analysis of normal sample TARGET-20-PATKWH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKWH-14A-01D A42284 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42284_1_lane_dupsFlagged.bam	SRR1386042	@dbgap@:reads/SRP012000/SRS635785/SRX593627/SRR1386042/SRR1386042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKWH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKWH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKWH-14A-01D	DNA	EFO	SRS635785	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKWH-14A-01D A42284 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42284	SRX593627	"Specific Capture analysis of normal sample TARGET-20-PATKWH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKWH-14A-01D A42284 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42284_1_lane_dupsFlagged.bam	SRR1386042	@dbgap@:reads/SRP012000/SRS635785/SRX593627/SRR1386042/SRR1386042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKWH-09A-01D_TARGET-20-PATKWH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKWH-14A-01D	DNA	EFO	SRS635785	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKWH-14A-01D A42284 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42284	SRX593627	"Specific Capture analysis of normal sample TARGET-20-PATKWH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKWH-14A-01D A42284 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42284_1_lane_dupsFlagged.bam	SRR1386042	@dbgap@:reads/SRP012000/SRS635785/SRX593627/SRR1386042/SRR1386042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKWH-09A-01D_TARGET-20-PATKWH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKYC-09A-01D	DNA	EFO	SRS629122	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKYC-09A-01D A33335 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33335	SRX575177	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKYC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATKYC-09A-01D A33335 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33335_1_lane_dupsFlagged.bam	SRR1346472	@dbgap@:reads/SRP012000/SRS629122/SRX575177/SRR1346472/SRR1346472.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKYC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKYC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATKYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKYC-09A-01D	DNA	EFO	SRS629122	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKYC-09A-01D A33335 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33335	SRX575177	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKYC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATKYC-09A-01D A33335 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33335_1_lane_dupsFlagged.bam	SRR1346472	@dbgap@:reads/SRP012000/SRS629122/SRX575177/SRR1346472/SRR1346472.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKYC-09A-01D_TARGET-20-PATKYC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKYC-09A-01D	DNA	EFO	SRS629122	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKYC-09A-01D A33335 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33335	SRX575177	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKYC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATKYC-09A-01D A33335 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33335_1_lane_dupsFlagged.bam	SRR1346472	@dbgap@:reads/SRP012000/SRS629122/SRX575177/SRR1346472/SRR1346472.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKYC-09A-01D_TARGET-20-PATKYC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKYC-14A-01D	DNA	EFO	SRS636004	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKYC-14A-01D A42592 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42592	SRX593973	"Specific Capture analysis of normal sample TARGET-20-PATKYC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKYC-14A-01D A42592 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42592_1_lane_dupsFlagged.bam	SRR1386497	@dbgap@:reads/SRP012000/SRS636004/SRX593973/SRR1386497/SRR1386497.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKYC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKYC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATKYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKYC-14A-01D	DNA	EFO	SRS636004	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKYC-14A-01D A42592 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42592	SRX593973	"Specific Capture analysis of normal sample TARGET-20-PATKYC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKYC-14A-01D A42592 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42592_1_lane_dupsFlagged.bam	SRR1386497	@dbgap@:reads/SRP012000/SRS636004/SRX593973/SRR1386497/SRR1386497.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKYC-09A-01D_TARGET-20-PATKYC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATKYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKYC-14A-01D	DNA	EFO	SRS636004	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKYC-14A-01D A42592 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42592	SRX593973	"Specific Capture analysis of normal sample TARGET-20-PATKYC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATKYC-14A-01D A42592 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42592_1_lane_dupsFlagged.bam	SRR1386497	@dbgap@:reads/SRP012000/SRS636004/SRX593973/SRR1386497/SRR1386497.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATKYC-09A-01D_TARGET-20-PATKYC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATKYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATKYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATKYT-09A-01D	DNA	EFO	SRS633930	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATKYT-09A-01D A41509 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41509	SRX588535	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATKYT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATKYT-09A-01D A41509 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41509_1_lane_dupsFlagged.bam	SRR1374856	@dbgap@:reads/SRP012000/SRS633930/SRX588535/SRR1374856/SRR1374856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATKYT-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATKYT-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATLBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLBC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLBC-03A-01D	DNA	EFO	SRS633944	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLBC-03A-01D A41510 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41510	SRX588550	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLBC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATLBC-03A-01D A41510 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41510_1_lane_dupsFlagged.bam	SRR1374904	@dbgap@:reads/SRP012000/SRS633944/SRX588550/SRR1374904/SRR1374904.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLBC-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLBC-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATLBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLBC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLBC-03A-01D	DNA	EFO	SRS633944	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLBC-03A-01D A41510 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41510	SRX588550	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLBC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATLBC-03A-01D A41510 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41510_1_lane_dupsFlagged.bam	SRR1374904	@dbgap@:reads/SRP012000/SRS633944/SRX588550/SRR1374904/SRR1374904.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLBC-03A-01D_TARGET-20-PATLBC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATLBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLBC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLBC-03A-01D	DNA	EFO	SRS633944	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLBC-03A-01D A41510 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41510	SRX588550	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLBC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATLBC-03A-01D A41510 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41510_1_lane_dupsFlagged.bam	SRR1374904	@dbgap@:reads/SRP012000/SRS633944/SRX588550/SRR1374904/SRR1374904.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLBC-03A-01D_TARGET-20-PATLBC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATLBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLBC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLBC-14A-01D	DNA	EFO	SRS635983	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLBC-14A-01D A42633 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42633	SRX593946	"Specific Capture analysis of normal sample TARGET-20-PATLBC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATLBC-14A-01D A42633 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42633_1_lane_dupsFlagged.bam	SRR1386440	@dbgap@:reads/SRP012000/SRS635983/SRX593946/SRR1386440/SRR1386440.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLBC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLBC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATLBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLBC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLBC-14A-01D	DNA	EFO	SRS635983	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLBC-14A-01D A42633 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42633	SRX593946	"Specific Capture analysis of normal sample TARGET-20-PATLBC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATLBC-14A-01D A42633 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42633_1_lane_dupsFlagged.bam	SRR1386440	@dbgap@:reads/SRP012000/SRS635983/SRX593946/SRR1386440/SRR1386440.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLBC-03A-01D_TARGET-20-PATLBC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATLBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLBC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLBC-14A-01D	DNA	EFO	SRS635983	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLBC-14A-01D A42633 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42633	SRX593946	"Specific Capture analysis of normal sample TARGET-20-PATLBC-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATLBC-14A-01D A42633 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42633_1_lane_dupsFlagged.bam	SRR1386440	@dbgap@:reads/SRP012000/SRS635983/SRX593946/SRR1386440/SRR1386440.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLBC-03A-01D_TARGET-20-PATLBC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATLDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLDB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLDB-09A-01D	DNA	EFO	SRS629151	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLDB-09A-01D A33336 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33336	SRX575207	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLDB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATLDB-09A-01D A33336 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33336_1_lane_dupsFlagged.bam	SRR1346419	@dbgap@:reads/SRP012000/SRS629151/SRX575207/SRR1346419/SRR1346419.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLDB-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLDB-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLDZ-09A-01D	DNA	EFO	SRS633911	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLDZ-09A-01D A41511 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41511	SRX588516	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLDZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATLDZ-09A-01D A41511 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41511_1_lane_dupsFlagged.bam	SRR1374901	@dbgap@:reads/SRP012000/SRS633911/SRX588516/SRR1374901/SRR1374901.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLDZ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLDZ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATLFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLFJ-09A-01D	DNA	EFO	SRS633925	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLFJ-09A-01D A41512 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	271	A41512	SRX588530	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLFJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATLFJ-09A-01D A41512 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41512_1_lane_dupsFlagged.bam	SRR1374863	@dbgap@:reads/SRP012000/SRS633925/SRX588530/SRR1374863/SRR1374863.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLFJ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLFJ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATLHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLHB-03A-01D	DNA	EFO	SRS635463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLHB-03A-01D A41716 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41716	SRX593185	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLHB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATLHB-03A-01D A41716 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41716_1_lane_dupsFlagged.bam	SRR1385638	@dbgap@:reads/SRP012000/SRS635463/SRX593185/SRR1385638/SRR1385638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLHB-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLHB-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATLHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLHB-03A-01D	DNA	EFO	SRS635463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLHB-03A-01D A41716 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41716	SRX593185	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLHB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATLHB-03A-01D A41716 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41716_1_lane_dupsFlagged.bam	SRR1385638	@dbgap@:reads/SRP012000/SRS635463/SRX593185/SRR1385638/SRR1385638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLHB-03A-01D_TARGET-20-PATLHB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATLHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLHB-03A-01D	DNA	EFO	SRS635463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLHB-03A-01D A41716 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41716	SRX593185	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLHB-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATLHB-03A-01D A41716 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41716_1_lane_dupsFlagged.bam	SRR1385638	@dbgap@:reads/SRP012000/SRS635463/SRX593185/SRR1385638/SRR1385638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLHB-03A-01D_TARGET-20-PATLHB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATLHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLHB-04A-01D	DNA	EFO	SRS637331	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLHB-04A-01D A42241 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42241	SRX597715	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLHB-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATLHB-04A-01D A42241 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42241_1_lane_dupsFlagged.bam	SRR1394987	@dbgap@:reads/SRP012000/SRS637331/SRX597715/SRR1394987/SRR1394987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLHB-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLHB-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATLHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLHB-04A-01D	DNA	EFO	SRS637331	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLHB-04A-01D A42241 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42241	SRX597715	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLHB-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATLHB-04A-01D A42241 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42241_1_lane_dupsFlagged.bam	SRR1394987	@dbgap@:reads/SRP012000/SRS637331/SRX597715/SRR1394987/SRR1394987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLHB-04A-01D_TARGET-20-PATLHB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATLHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLHB-04A-01D	DNA	EFO	SRS637331	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLHB-04A-01D A42241 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42241	SRX597715	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLHB-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATLHB-04A-01D A42241 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42241_1_lane_dupsFlagged.bam	SRR1394987	@dbgap@:reads/SRP012000/SRS637331/SRX597715/SRR1394987/SRR1394987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLHB-04A-01D_TARGET-20-PATLHB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATLHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLHB-14A-01D	DNA	EFO	SRS636017	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLHB-14A-01D A42594 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42594	SRX593988	"Specific Capture analysis of normal sample TARGET-20-PATLHB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATLHB-14A-01D A42594 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42594_1_lane_dupsFlagged.bam	SRR1386448	@dbgap@:reads/SRP012000/SRS636017/SRX593988/SRR1386448/SRR1386448.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLHB-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLHB-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATLHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLHB-14A-01D	DNA	EFO	SRS636017	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLHB-14A-01D A42594 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42594	SRX593988	"Specific Capture analysis of normal sample TARGET-20-PATLHB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATLHB-14A-01D A42594 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42594_1_lane_dupsFlagged.bam	SRR1386448	@dbgap@:reads/SRP012000/SRS636017/SRX593988/SRR1386448/SRR1386448.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLHB-03A-01D_TARGET-20-PATLHB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATLHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLHB-14A-01D	DNA	EFO	SRS636017	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLHB-14A-01D A42594 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42594	SRX593988	"Specific Capture analysis of normal sample TARGET-20-PATLHB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATLHB-14A-01D A42594 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42594_1_lane_dupsFlagged.bam	SRR1386448	@dbgap@:reads/SRP012000/SRS636017/SRX593988/SRR1386448/SRR1386448.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLHB-03A-01D_TARGET-20-PATLHB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATLHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLHB-14A-01D	DNA	EFO	SRS636017	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLHB-14A-01D A42594 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42594	SRX593988	"Specific Capture analysis of normal sample TARGET-20-PATLHB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATLHB-14A-01D A42594 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42594_1_lane_dupsFlagged.bam	SRR1386448	@dbgap@:reads/SRP012000/SRS636017/SRX593988/SRR1386448/SRR1386448.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLHB-04A-01D_TARGET-20-PATLHB-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATLHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLHB-14A-01D	DNA	EFO	SRS636017	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLHB-14A-01D A42594 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42594	SRX593988	"Specific Capture analysis of normal sample TARGET-20-PATLHB-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATLHB-14A-01D A42594 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42594_1_lane_dupsFlagged.bam	SRR1386448	@dbgap@:reads/SRP012000/SRS636017/SRX593988/SRR1386448/SRR1386448.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLHB-04A-01D_TARGET-20-PATLHB-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATLIG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLIG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLIG-09A-01D	DNA	EFO	SRS629126	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLIG-09A-01D A33337 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33337	SRX575181	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLIG-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATLIG-09A-01D A33337 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33337_1_lane_dupsFlagged.bam	SRR1346428	@dbgap@:reads/SRP012000/SRS629126/SRX575181/SRR1346428/SRR1346428.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLIG-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLIG-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATLJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLJF-09A-01D	DNA	EFO	SRS629194	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLJF-09A-01D A33349 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33349	SRX575250	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLJF-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATLJF-09A-01D A33349 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33349_1_lane_dupsFlagged.bam	SRR1346447	@dbgap@:reads/SRP012000/SRS629194/SRX575250/SRR1346447/SRR1346447.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLJF-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLJF-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATLKU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLKU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLKU-09A-01D	DNA	EFO	SRS629118	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLKU-09A-01D A33338 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33338	SRX575174	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLKU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATLKU-09A-01D A33338 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33338_1_lane_dupsFlagged.bam	SRR1346497	@dbgap@:reads/SRP012000/SRS629118/SRX575174/SRR1346497/SRR1346497.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLKU-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLKU-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATLLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLLK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLLK-09A-01D	DNA	EFO	SRS629177	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLLK-09A-01D A33339 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33339	SRX575234	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLLK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATLLK-09A-01D A33339 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33339_1_lane_dupsFlagged.bam	SRR1346429	@dbgap@:reads/SRP012000/SRS629177/SRX575234/SRR1346429/SRR1346429.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLLK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLLK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATLLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLLK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLLK-09A-01D	DNA	EFO	SRS629177	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLLK-09A-01D A33339 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33339	SRX575234	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLLK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATLLK-09A-01D A33339 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33339_1_lane_dupsFlagged.bam	SRR1346429	@dbgap@:reads/SRP012000/SRS629177/SRX575234/SRR1346429/SRR1346429.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLLK-09A-01D_TARGET-20-PATLLK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATLLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLLK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLLK-09A-01D	DNA	EFO	SRS629177	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLLK-09A-01D A33339 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33339	SRX575234	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLLK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATLLK-09A-01D A33339 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33339_1_lane_dupsFlagged.bam	SRR1346429	@dbgap@:reads/SRP012000/SRS629177/SRX575234/SRR1346429/SRR1346429.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLLK-09A-01D_TARGET-20-PATLLK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATLLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLLK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLLK-14A-01D	DNA	EFO	SRS636014	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLLK-14A-01D A42623 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42623	SRX593984	"Specific Capture analysis of normal sample TARGET-20-PATLLK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATLLK-14A-01D A42623 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42623_1_lane_dupsFlagged.bam	SRR1386495	@dbgap@:reads/SRP012000/SRS636014/SRX593984/SRR1386495/SRR1386495.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLLK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLLK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATLLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLLK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLLK-14A-01D	DNA	EFO	SRS636014	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLLK-14A-01D A42623 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42623	SRX593984	"Specific Capture analysis of normal sample TARGET-20-PATLLK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATLLK-14A-01D A42623 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42623_1_lane_dupsFlagged.bam	SRR1386495	@dbgap@:reads/SRP012000/SRS636014/SRX593984/SRR1386495/SRR1386495.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLLK-09A-01D_TARGET-20-PATLLK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATLLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLLK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLLK-14A-01D	DNA	EFO	SRS636014	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLLK-14A-01D A42623 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42623	SRX593984	"Specific Capture analysis of normal sample TARGET-20-PATLLK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-18	TARGET-20-PATLLK-14A-01D A42623 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42623_1_lane_dupsFlagged.bam	SRR1386495	@dbgap@:reads/SRP012000/SRS636014/SRX593984/SRR1386495/SRR1386495.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLLK-09A-01D_TARGET-20-PATLLK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATLMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLMH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLMH-04A-01D	DNA	EFO	SRS637353	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLMH-04A-01D A42191 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42191	SRX597757	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLMH-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATLMH-04A-01D A42191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42191_1_lane_dupsFlagged.bam	SRR1394973	@dbgap@:reads/SRP012000/SRS637353/SRX597757/SRR1394973/SRR1394973.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLMH-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLMH-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATLMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLMH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLMH-04A-01D	DNA	EFO	SRS637353	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLMH-04A-01D A42191 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42191	SRX597757	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLMH-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATLMH-04A-01D A42191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42191_1_lane_dupsFlagged.bam	SRR1394973	@dbgap@:reads/SRP012000/SRS637353/SRX597757/SRR1394973/SRR1394973.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLMH-04A-01D_TARGET-20-PATLMH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATLMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLMH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLMH-04A-01D	DNA	EFO	SRS637353	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLMH-04A-01D A42191 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42191	SRX597757	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLMH-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATLMH-04A-01D A42191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42191_1_lane_dupsFlagged.bam	SRR1394973	@dbgap@:reads/SRP012000/SRS637353/SRX597757/SRR1394973/SRR1394973.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLMH-04A-01D_TARGET-20-PATLMH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATLMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLMH-09A-01D	DNA	EFO	SRS628968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLMH-09A-01D A32314 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32314	SRX575024	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLMH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATLMH-09A-01D A32314 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32314_1_lane_dupsFlagged.bam	SRR1346163	@dbgap@:reads/SRP012000/SRS628968/SRX575024/SRR1346163/SRR1346163.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLMH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLMH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATLMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLMH-09A-01D	DNA	EFO	SRS628968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLMH-09A-01D A32314 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32314	SRX575024	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLMH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATLMH-09A-01D A32314 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32314_1_lane_dupsFlagged.bam	SRR1346163	@dbgap@:reads/SRP012000/SRS628968/SRX575024/SRR1346163/SRR1346163.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLMH-09A-01D_TARGET-20-PATLMH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATLMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLMH-09A-01D	DNA	EFO	SRS628968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLMH-09A-01D A32314 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A32314	SRX575024	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLMH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-29	TARGET-20-PATLMH-09A-01D A32314 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A32314_1_lane_dupsFlagged.bam	SRR1346163	@dbgap@:reads/SRP012000/SRS628968/SRX575024/SRR1346163/SRR1346163.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLMH-09A-01D_TARGET-20-PATLMH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATLMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLMH-14A-01D	DNA	EFO	SRS635898	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLMH-14A-01D A42521 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42521	SRX593858	"Specific Capture analysis of normal sample TARGET-20-PATLMH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATLMH-14A-01D A42521 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42521_1_lane_dupsFlagged.bam	SRR1386401	@dbgap@:reads/SRP012000/SRS635898/SRX593858/SRR1386401/SRR1386401.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLMH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLMH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATLMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLMH-14A-01D	DNA	EFO	SRS635898	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLMH-14A-01D A42521 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42521	SRX593858	"Specific Capture analysis of normal sample TARGET-20-PATLMH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATLMH-14A-01D A42521 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42521_1_lane_dupsFlagged.bam	SRR1386401	@dbgap@:reads/SRP012000/SRS635898/SRX593858/SRR1386401/SRR1386401.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLMH-04A-01D_TARGET-20-PATLMH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATLMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLMH-14A-01D	DNA	EFO	SRS635898	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLMH-14A-01D A42521 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42521	SRX593858	"Specific Capture analysis of normal sample TARGET-20-PATLMH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATLMH-14A-01D A42521 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42521_1_lane_dupsFlagged.bam	SRR1386401	@dbgap@:reads/SRP012000/SRS635898/SRX593858/SRR1386401/SRR1386401.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLMH-04A-01D_TARGET-20-PATLMH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATLMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLMH-14A-01D	DNA	EFO	SRS635898	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLMH-14A-01D A42521 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42521	SRX593858	"Specific Capture analysis of normal sample TARGET-20-PATLMH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATLMH-14A-01D A42521 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42521_1_lane_dupsFlagged.bam	SRR1386401	@dbgap@:reads/SRP012000/SRS635898/SRX593858/SRR1386401/SRR1386401.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLMH-09A-01D_TARGET-20-PATLMH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATLMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLMH-14A-01D	DNA	EFO	SRS635898	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLMH-14A-01D A42521 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42521	SRX593858	"Specific Capture analysis of normal sample TARGET-20-PATLMH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATLMH-14A-01D A42521 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42521_1_lane_dupsFlagged.bam	SRR1386401	@dbgap@:reads/SRP012000/SRS635898/SRX593858/SRR1386401/SRR1386401.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLMH-09A-01D_TARGET-20-PATLMH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATLVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLVC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLVC-09A-01D	DNA	EFO	SRS629136	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLVC-09A-01D A33340 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33340	SRX575192	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLVC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATLVC-09A-01D A33340 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33340_1_lane_dupsFlagged.bam	SRR1346427	@dbgap@:reads/SRP012000/SRS629136/SRX575192/SRR1346427/SRR1346427.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLVC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLVC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATLVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLVC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLVC-09A-01D	DNA	EFO	SRS629136	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLVC-09A-01D A33340 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33340	SRX575192	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLVC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATLVC-09A-01D A33340 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33340_1_lane_dupsFlagged.bam	SRR1346427	@dbgap@:reads/SRP012000/SRS629136/SRX575192/SRR1346427/SRR1346427.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLVC-09A-01D_TARGET-20-PATLVC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATLVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLVC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLVC-09A-01D	DNA	EFO	SRS629136	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLVC-09A-01D A33340 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33340	SRX575192	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLVC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATLVC-09A-01D A33340 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33340_1_lane_dupsFlagged.bam	SRR1346427	@dbgap@:reads/SRP012000/SRS629136/SRX575192/SRR1346427/SRR1346427.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLVC-09A-01D_TARGET-20-PATLVC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATLVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLVC-14A-01D	DNA	EFO	SRS635764	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLVC-14A-01D A42285 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42285	SRX593600	"Specific Capture analysis of normal sample TARGET-20-PATLVC-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATLVC-14A-01D A42285 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42285_1_lane_dupsFlagged.bam	SRR1386033	@dbgap@:reads/SRP012000/SRS635764/SRX593600/SRR1386033/SRR1386033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLVC-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLVC-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATLVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLVC-14A-01D	DNA	EFO	SRS635764	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLVC-14A-01D A42285 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42285	SRX593600	"Specific Capture analysis of normal sample TARGET-20-PATLVC-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATLVC-14A-01D A42285 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42285_1_lane_dupsFlagged.bam	SRR1386033	@dbgap@:reads/SRP012000/SRS635764/SRX593600/SRR1386033/SRR1386033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLVC-09A-01D_TARGET-20-PATLVC-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATLVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLVC-14A-01D	DNA	EFO	SRS635764	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLVC-14A-01D A42285 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42285	SRX593600	"Specific Capture analysis of normal sample TARGET-20-PATLVC-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATLVC-14A-01D A42285 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42285_1_lane_dupsFlagged.bam	SRR1386033	@dbgap@:reads/SRP012000/SRS635764/SRX593600/SRR1386033/SRR1386033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLVC-09A-01D_TARGET-20-PATLVC-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATLVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLVK-09A-01D	DNA	EFO	SRS633888	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLVK-09A-01D A41513 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41513	SRX588492	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLVK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATLVK-09A-01D A41513 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41513_1_lane_dupsFlagged.bam	SRR1374883	@dbgap@:reads/SRP012000/SRS633888/SRX588492/SRR1374883/SRR1374883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLVK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLVK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATLVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLVK-09A-01D	DNA	EFO	SRS633888	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLVK-09A-01D A41513 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41513	SRX588492	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLVK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATLVK-09A-01D A41513 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41513_1_lane_dupsFlagged.bam	SRR1374883	@dbgap@:reads/SRP012000/SRS633888/SRX588492/SRR1374883/SRR1374883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLVK-09A-01D_TARGET-20-PATLVK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATLVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLVK-09A-01D	DNA	EFO	SRS633888	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLVK-09A-01D A41513 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41513	SRX588492	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLVK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATLVK-09A-01D A41513 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41513_1_lane_dupsFlagged.bam	SRR1374883	@dbgap@:reads/SRP012000/SRS633888/SRX588492/SRR1374883/SRR1374883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLVK-09A-01D_TARGET-20-PATLVK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATLVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLVK-14A-01D	DNA	EFO	SRS635979	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLVK-14A-01D A42624 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42624	SRX593942	"Specific Capture analysis of normal sample TARGET-20-PATLVK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATLVK-14A-01D A42624 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42624_1_lane_dupsFlagged.bam	SRR1386466	@dbgap@:reads/SRP012000/SRS635979/SRX593942/SRR1386466/SRR1386466.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLVK-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLVK-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATLVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLVK-14A-01D	DNA	EFO	SRS635979	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLVK-14A-01D A42624 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42624	SRX593942	"Specific Capture analysis of normal sample TARGET-20-PATLVK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATLVK-14A-01D A42624 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42624_1_lane_dupsFlagged.bam	SRR1386466	@dbgap@:reads/SRP012000/SRS635979/SRX593942/SRR1386466/SRR1386466.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLVK-09A-01D_TARGET-20-PATLVK-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATLVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLVK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLVK-14A-01D	DNA	EFO	SRS635979	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLVK-14A-01D A42624 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42624	SRX593942	"Specific Capture analysis of normal sample TARGET-20-PATLVK-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATLVK-14A-01D A42624 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42624_1_lane_dupsFlagged.bam	SRR1386466	@dbgap@:reads/SRP012000/SRS635979/SRX593942/SRR1386466/SRR1386466.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATLVK-09A-01D_TARGET-20-PATLVK-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATLZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLZB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLZB-04A-01D	DNA	EFO	SRS637542	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLZB-04A-01D A42751 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	374	A42751	SRX597980	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLZB-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-20-PATLZB-04A-01D A42751 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42751_1_lane_dupsFlagged.bam	SRR1395246	@dbgap@:reads/SRP012000/SRS637542/SRX597980/SRR1395246/SRR1395246.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLZB-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLZB-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATLZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLZB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLZB-09A-01D	DNA	EFO	SRS633938	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLZB-09A-01D A41515 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41515	SRX588544	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLZB-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATLZB-09A-01D A41515 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41515_1_lane_dupsFlagged.bam	SRR1374862	@dbgap@:reads/SRP012000/SRS633938/SRX588544/SRR1374862/SRR1374862.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLZB-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLZB-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATLZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATLZC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATLZC-03A-01D	DNA	EFO	SRS633966	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATLZC-03A-01D A41514 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A41514	SRX588572	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATLZC-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATLZC-03A-01D A41514 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41514_1_lane_dupsFlagged.bam	SRR1374860	@dbgap@:reads/SRP012000/SRS633966/SRX588572/SRR1374860/SRR1374860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATLZC-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATLZC-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATMCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMCW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMCW-09A-01D	DNA	EFO	SRS633901	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMCW-09A-01D A41516 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41516	SRX588505	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMCW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATMCW-09A-01D A41516 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41516_1_lane_dupsFlagged.bam	SRR1374879	@dbgap@:reads/SRP012000/SRS633901/SRX588505/SRR1374879/SRR1374879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATMCW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATMCW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATMCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMCW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMCW-09A-01D	DNA	EFO	SRS633901	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMCW-09A-01D A41516 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41516	SRX588505	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMCW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATMCW-09A-01D A41516 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41516_1_lane_dupsFlagged.bam	SRR1374879	@dbgap@:reads/SRP012000/SRS633901/SRX588505/SRR1374879/SRR1374879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMCW-09A-01D_TARGET-20-PATMCW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATMCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMCW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMCW-09A-01D	DNA	EFO	SRS633901	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMCW-09A-01D A41516 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41516	SRX588505	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMCW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATMCW-09A-01D A41516 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41516_1_lane_dupsFlagged.bam	SRR1374879	@dbgap@:reads/SRP012000/SRS633901/SRX588505/SRR1374879/SRR1374879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMCW-09A-01D_TARGET-20-PATMCW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATMCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMCW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMCW-14A-01D	DNA	EFO	SRS635741	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMCW-14A-01D A42352 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42352	SRX593574	"Specific Capture analysis of normal sample TARGET-20-PATMCW-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATMCW-14A-01D A42352 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42352_1_lane_dupsFlagged.bam	SRR1386022	@dbgap@:reads/SRP012000/SRS635741/SRX593574/SRR1386022/SRR1386022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATMCW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATMCW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATMCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMCW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMCW-14A-01D	DNA	EFO	SRS635741	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMCW-14A-01D A42352 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42352	SRX593574	"Specific Capture analysis of normal sample TARGET-20-PATMCW-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATMCW-14A-01D A42352 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42352_1_lane_dupsFlagged.bam	SRR1386022	@dbgap@:reads/SRP012000/SRS635741/SRX593574/SRR1386022/SRR1386022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMCW-09A-01D_TARGET-20-PATMCW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATMCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMCW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMCW-14A-01D	DNA	EFO	SRS635741	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMCW-14A-01D A42352 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42352	SRX593574	"Specific Capture analysis of normal sample TARGET-20-PATMCW-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATMCW-14A-01D A42352 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42352_1_lane_dupsFlagged.bam	SRR1386022	@dbgap@:reads/SRP012000/SRS635741/SRX593574/SRR1386022/SRR1386022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMCW-09A-01D_TARGET-20-PATMCW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATMDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMDJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMDJ-09A-01D	DNA	EFO	SRS633890	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMDJ-09A-01D A41517 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41517	SRX588494	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMDJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATMDJ-09A-01D A41517 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41517_1_lane_dupsFlagged.bam	SRR1374851	@dbgap@:reads/SRP012000/SRS633890/SRX588494/SRR1374851/SRR1374851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATMDJ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATMDJ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATMDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMDJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMDJ-09A-01D	DNA	EFO	SRS633890	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMDJ-09A-01D A41517 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41517	SRX588494	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMDJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATMDJ-09A-01D A41517 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41517_1_lane_dupsFlagged.bam	SRR1374851	@dbgap@:reads/SRP012000/SRS633890/SRX588494/SRR1374851/SRR1374851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMDJ-09A-01D_TARGET-20-PATMDJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATMDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMDJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMDJ-09A-01D	DNA	EFO	SRS633890	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMDJ-09A-01D A41517 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41517	SRX588494	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMDJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATMDJ-09A-01D A41517 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41517_1_lane_dupsFlagged.bam	SRR1374851	@dbgap@:reads/SRP012000/SRS633890/SRX588494/SRR1374851/SRR1374851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMDJ-09A-01D_TARGET-20-PATMDJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATMDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMDJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMDJ-14A-01D	DNA	EFO	SRS635765	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMDJ-14A-01D A42325 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42325	SRX593598	"Specific Capture analysis of normal sample TARGET-20-PATMDJ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATMDJ-14A-01D A42325 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42325_1_lane_dupsFlagged.bam	SRR1386075	@dbgap@:reads/SRP012000/SRS635765/SRX593598/SRR1386075/SRR1386075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATMDJ-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATMDJ-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATMDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMDJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMDJ-14A-01D	DNA	EFO	SRS635765	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMDJ-14A-01D A42325 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42325	SRX593598	"Specific Capture analysis of normal sample TARGET-20-PATMDJ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATMDJ-14A-01D A42325 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42325_1_lane_dupsFlagged.bam	SRR1386075	@dbgap@:reads/SRP012000/SRS635765/SRX593598/SRR1386075/SRR1386075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMDJ-09A-01D_TARGET-20-PATMDJ-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATMDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMDJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMDJ-14A-01D	DNA	EFO	SRS635765	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMDJ-14A-01D A42325 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42325	SRX593598	"Specific Capture analysis of normal sample TARGET-20-PATMDJ-14A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-20-PATMDJ-14A-01D A42325 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42325_1_lane_dupsFlagged.bam	SRR1386075	@dbgap@:reads/SRP012000/SRS635765/SRX593598/SRR1386075/SRR1386075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMDJ-09A-01D_TARGET-20-PATMDJ-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATMDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMDZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMDZ-03A-01D	DNA	EFO	SRS629108	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMDZ-03A-01D A33342 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33342	SRX575165	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMDZ-03A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATMDZ-03A-01D A33342 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33342_1_lane_dupsFlagged.bam	SRR1346439	@dbgap@:reads/SRP012000/SRS629108/SRX575165/SRR1346439/SRR1346439.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATMDZ-03A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATMDZ-03A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATMEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMEU-09A-01D	DNA	EFO	SRS633936	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMEU-09A-01D A41518 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	263	A41518	SRX588542	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMEU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATMEU-09A-01D A41518 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41518_1_lane_dupsFlagged.bam	SRR1374837	@dbgap@:reads/SRP012000/SRS633936/SRX588542/SRR1374837/SRR1374837.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATMEU-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATMEU-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATMFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFM-04A-01D	DNA	EFO	SRS637337	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFM-04A-01D A42234 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42234	SRX597726	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMFM-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATMFM-04A-01D A42234 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42234_1_lane_dupsFlagged.bam	SRR1395013	@dbgap@:reads/SRP012000/SRS637337/SRX597726/SRR1395013/SRR1395013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATMFM-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATMFM-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATMFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFM-04A-01D	DNA	EFO	SRS637337	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFM-04A-01D A42234 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42234	SRX597726	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMFM-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATMFM-04A-01D A42234 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42234_1_lane_dupsFlagged.bam	SRR1395013	@dbgap@:reads/SRP012000/SRS637337/SRX597726/SRR1395013/SRR1395013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMFM-04A-01D_TARGET-20-PATMFM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATMFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFM-04A-01D	DNA	EFO	SRS637337	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFM-04A-01D A42234 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42234	SRX597726	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMFM-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATMFM-04A-01D A42234 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42234_1_lane_dupsFlagged.bam	SRR1395013	@dbgap@:reads/SRP012000/SRS637337/SRX597726/SRR1395013/SRR1395013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMFM-04A-01D_TARGET-20-PATMFM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATMFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFM-09A-01D	DNA	EFO	SRS629159	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFM-09A-01D A33341 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33341	SRX575215	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMFM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATMFM-09A-01D A33341 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33341_1_lane_dupsFlagged.bam	SRR1346485	@dbgap@:reads/SRP012000/SRS629159/SRX575215/SRR1346485/SRR1346485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATMFM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATMFM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATMFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFM-09A-01D	DNA	EFO	SRS629159	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFM-09A-01D A33341 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33341	SRX575215	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMFM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATMFM-09A-01D A33341 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33341_1_lane_dupsFlagged.bam	SRR1346485	@dbgap@:reads/SRP012000/SRS629159/SRX575215/SRR1346485/SRR1346485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMFM-09A-01D_TARGET-20-PATMFM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATMFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFM-09A-01D	DNA	EFO	SRS629159	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFM-09A-01D A33341 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33341	SRX575215	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMFM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATMFM-09A-01D A33341 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33341_1_lane_dupsFlagged.bam	SRR1346485	@dbgap@:reads/SRP012000/SRS629159/SRX575215/SRR1346485/SRR1346485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMFM-09A-01D_TARGET-20-PATMFM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATMFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFM-14A-01D	DNA	EFO	SRS635986	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFM-14A-01D A42593 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42593	SRX593948	"Specific Capture analysis of normal sample TARGET-20-PATMFM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATMFM-14A-01D A42593 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42593_1_lane_dupsFlagged.bam	SRR1386423	@dbgap@:reads/SRP012000/SRS635986/SRX593948/SRR1386423/SRR1386423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATMFM-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATMFM-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATMFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFM-14A-01D	DNA	EFO	SRS635986	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFM-14A-01D A42593 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42593	SRX593948	"Specific Capture analysis of normal sample TARGET-20-PATMFM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATMFM-14A-01D A42593 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42593_1_lane_dupsFlagged.bam	SRR1386423	@dbgap@:reads/SRP012000/SRS635986/SRX593948/SRR1386423/SRR1386423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMFM-04A-01D_TARGET-20-PATMFM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATMFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFM-14A-01D	DNA	EFO	SRS635986	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFM-14A-01D A42593 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42593	SRX593948	"Specific Capture analysis of normal sample TARGET-20-PATMFM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATMFM-14A-01D A42593 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42593_1_lane_dupsFlagged.bam	SRR1386423	@dbgap@:reads/SRP012000/SRS635986/SRX593948/SRR1386423/SRR1386423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMFM-04A-01D_TARGET-20-PATMFM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATMFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFM-14A-01D	DNA	EFO	SRS635986	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFM-14A-01D A42593 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42593	SRX593948	"Specific Capture analysis of normal sample TARGET-20-PATMFM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATMFM-14A-01D A42593 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42593_1_lane_dupsFlagged.bam	SRR1386423	@dbgap@:reads/SRP012000/SRS635986/SRX593948/SRR1386423/SRR1386423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMFM-09A-01D_TARGET-20-PATMFM-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATMFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFM-14A-01D	DNA	EFO	SRS635986	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFM-14A-01D A42593 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42593	SRX593948	"Specific Capture analysis of normal sample TARGET-20-PATMFM-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATMFM-14A-01D A42593 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42593_1_lane_dupsFlagged.bam	SRR1386423	@dbgap@:reads/SRP012000/SRS635986/SRX593948/SRR1386423/SRR1386423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMFM-09A-01D_TARGET-20-PATMFM-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATMFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFW-04A-01D	DNA	EFO	SRS637348	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFW-04A-01D A42219 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42219	SRX597744	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMFW-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATMFW-04A-01D A42219 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42219_1_lane_dupsFlagged.bam	SRR1394978	@dbgap@:reads/SRP012000/SRS637348/SRX597744/SRR1394978/SRR1394978.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATMFW-04A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATMFW-04A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATMFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFW-04A-01D	DNA	EFO	SRS637348	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFW-04A-01D A42219 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42219	SRX597744	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMFW-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATMFW-04A-01D A42219 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42219_1_lane_dupsFlagged.bam	SRR1394978	@dbgap@:reads/SRP012000/SRS637348/SRX597744/SRR1394978/SRR1394978.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMFW-04A-01D_TARGET-20-PATMFW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATMFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFW-04A-01D	DNA	EFO	SRS637348	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFW-04A-01D A42219 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A42219	SRX597744	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMFW-04A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-17	TARGET-20-PATMFW-04A-01D A42219 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42219_1_lane_dupsFlagged.bam	SRR1394978	@dbgap@:reads/SRP012000/SRS637348/SRX597744/SRR1394978/SRR1394978.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMFW-04A-01D_TARGET-20-PATMFW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATMFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFW-09A-01D	DNA	EFO	SRS629188	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFW-09A-01D A33343 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33343	SRX575244	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMFW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATMFW-09A-01D A33343 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33343_1_lane_dupsFlagged.bam	SRR1346463	@dbgap@:reads/SRP012000/SRS629188/SRX575244/SRR1346463/SRR1346463.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATMFW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATMFW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATMFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFW-09A-01D	DNA	EFO	SRS629188	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFW-09A-01D A33343 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33343	SRX575244	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMFW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATMFW-09A-01D A33343 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33343_1_lane_dupsFlagged.bam	SRR1346463	@dbgap@:reads/SRP012000/SRS629188/SRX575244/SRR1346463/SRR1346463.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMFW-09A-01D_TARGET-20-PATMFW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATMFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFW-09A-01D	DNA	EFO	SRS629188	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFW-09A-01D A33343 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33343	SRX575244	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMFW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATMFW-09A-01D A33343 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33343_1_lane_dupsFlagged.bam	SRR1346463	@dbgap@:reads/SRP012000/SRS629188/SRX575244/SRR1346463/SRR1346463.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMFW-09A-01D_TARGET-20-PATMFW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATMFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFW-14A-01D	DNA	EFO	SRS637456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFW-14A-01D A42941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42941	SRX597872	"Specific Capture analysis of normal sample TARGET-20-PATMFW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATMFW-14A-01D A42941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42941_1_lane_dupsFlagged.bam	SRR1395180	@dbgap@:reads/SRP012000/SRS637456/SRX597872/SRR1395180/SRR1395180.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATMFW-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATMFW-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATMFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFW-14A-01D	DNA	EFO	SRS637456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFW-14A-01D A42941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42941	SRX597872	"Specific Capture analysis of normal sample TARGET-20-PATMFW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATMFW-14A-01D A42941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42941_1_lane_dupsFlagged.bam	SRR1395180	@dbgap@:reads/SRP012000/SRS637456/SRX597872/SRR1395180/SRR1395180.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMFW-04A-01D_TARGET-20-PATMFW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATMFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFW-14A-01D	DNA	EFO	SRS637456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFW-14A-01D A42941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42941	SRX597872	"Specific Capture analysis of normal sample TARGET-20-PATMFW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATMFW-14A-01D A42941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42941_1_lane_dupsFlagged.bam	SRR1395180	@dbgap@:reads/SRP012000/SRS637456/SRX597872/SRR1395180/SRR1395180.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMFW-04A-01D_TARGET-20-PATMFW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATMFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFW-14A-01D	DNA	EFO	SRS637456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFW-14A-01D A42941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42941	SRX597872	"Specific Capture analysis of normal sample TARGET-20-PATMFW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATMFW-14A-01D A42941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42941_1_lane_dupsFlagged.bam	SRR1395180	@dbgap@:reads/SRP012000/SRS637456/SRX597872/SRR1395180/SRR1395180.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMFW-09A-01D_TARGET-20-PATMFW-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATMFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMFW-14A-01D	DNA	EFO	SRS637456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMFW-14A-01D A42941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A42941	SRX597872	"Specific Capture analysis of normal sample TARGET-20-PATMFW-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-20-PATMFW-14A-01D A42941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A42941_1_lane_dupsFlagged.bam	SRR1395180	@dbgap@:reads/SRP012000/SRS637456/SRX597872/SRR1395180/SRR1395180.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMFW-09A-01D_TARGET-20-PATMFW-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATMIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMIK-09A-01D	DNA	EFO	SRS629175	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMIK-09A-01D A33350 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33350	SRX575231	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMIK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATMIK-09A-01D A33350 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33350_1_lane_dupsFlagged.bam	SRR1346424	@dbgap@:reads/SRP012000/SRS629175/SRX575231/SRR1346424/SRR1346424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATMIK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATMIK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATMIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMIK-09A-01D	DNA	EFO	SRS629175	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMIK-09A-01D A33350 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33350	SRX575231	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMIK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATMIK-09A-01D A33350 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33350_1_lane_dupsFlagged.bam	SRR1346424	@dbgap@:reads/SRP012000/SRS629175/SRX575231/SRR1346424/SRR1346424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMIK-09A-01D_TARGET-20-PATMIK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATMIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMIK-09A-01D	DNA	EFO	SRS629175	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMIK-09A-01D A33350 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33350	SRX575231	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMIK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATMIK-09A-01D A33350 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33350_1_lane_dupsFlagged.bam	SRR1346424	@dbgap@:reads/SRP012000/SRS629175/SRX575231/SRR1346424/SRR1346424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMIK-09A-01D_TARGET-20-PATMIK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATMIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMIK-10A-01D	DNA	EFO	SRS635696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMIK-10A-01D A41657 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41657	SRX593520	"Specific Capture analysis of normal sample TARGET-20-PATMIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATMIK-10A-01D A41657 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41657_1_lane_dupsFlagged.bam	SRR1385980	@dbgap@:reads/SRP012000/SRS635696/SRX593520/SRR1385980/SRR1385980.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATMIK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATMIK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATMIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMIK-10A-01D	DNA	EFO	SRS635696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMIK-10A-01D A41657 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41657	SRX593520	"Specific Capture analysis of normal sample TARGET-20-PATMIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATMIK-10A-01D A41657 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41657_1_lane_dupsFlagged.bam	SRR1385980	@dbgap@:reads/SRP012000/SRS635696/SRX593520/SRR1385980/SRR1385980.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMIK-09A-01D_TARGET-20-PATMIK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATMIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMIK-10A-01D	DNA	EFO	SRS635696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMIK-10A-01D A41657 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41657	SRX593520	"Specific Capture analysis of normal sample TARGET-20-PATMIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATMIK-10A-01D A41657 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41657_1_lane_dupsFlagged.bam	SRR1385980	@dbgap@:reads/SRP012000/SRS635696/SRX593520/SRR1385980/SRR1385980.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMIK-09A-01D_TARGET-20-PATMIK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATMMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMMC-09A-01D	DNA	EFO	SRS629185	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMMC-09A-01D A33351 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33351	SRX575241	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMMC-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATMMC-09A-01D A33351 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33351_1_lane_dupsFlagged.bam	SRR1346506	@dbgap@:reads/SRP012000/SRS629185/SRX575241/SRR1346506/SRR1346506.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATMMC-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATMMC-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATMNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMNT-09A-01D	DNA	EFO	SRS635511	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMNT-09A-01D A41717 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	275	A41717	SRX593234	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMNT-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATMNT-09A-01D A41717 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41717_1_lane_dupsFlagged.bam	SRR1385645	@dbgap@:reads/SRP012000/SRS635511/SRX593234/SRR1385645/SRR1385645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATMNT-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATMNT-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATMNY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMNY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMNY-09A-01D	DNA	EFO	SRS629192	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMNY-09A-01D A33352 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33352	SRX575248	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMNY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATMNY-09A-01D A33352 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33352_1_lane_dupsFlagged.bam	SRR1346466	@dbgap@:reads/SRP012000/SRS629192/SRX575248/SRR1346466/SRR1346466.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATMNY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATMNY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-20-PATMNY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMNY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMNY-09A-01D	DNA	EFO	SRS629192	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMNY-09A-01D A33352 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33352	SRX575248	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMNY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATMNY-09A-01D A33352 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33352_1_lane_dupsFlagged.bam	SRR1346466	@dbgap@:reads/SRP012000/SRS629192/SRX575248/SRR1346466/SRR1346466.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMNY-09A-01D_TARGET-20-PATMNY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATMNY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMNY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMNY-09A-01D	DNA	EFO	SRS629192	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMNY-09A-01D A33352 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A33352	SRX575248	"Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PATMNY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-21	TARGET-20-PATMNY-09A-01D A33352 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33352_1_lane_dupsFlagged.bam	SRR1346466	@dbgap@:reads/SRP012000/SRS629192/SRX575248/SRR1346466/SRR1346466.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMNY-09A-01D_TARGET-20-PATMNY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-20-PATMNY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMNY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMNY-10A-01D	DNA	EFO	SRS635695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMNY-10A-01D A41656 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41656	SRX593521	"Specific Capture analysis of normal sample TARGET-20-PATMNY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATMNY-10A-01D A41656 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41656_1_lane_dupsFlagged.bam	SRR1385931	@dbgap@:reads/SRP012000/SRS635695/SRX593521/SRR1385931/SRR1385931.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-20-PATMNY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-20-PATMNY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-20-PATMNY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMNY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMNY-10A-01D	DNA	EFO	SRS635695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMNY-10A-01D A41656 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41656	SRX593521	"Specific Capture analysis of normal sample TARGET-20-PATMNY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATMNY-10A-01D A41656 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41656_1_lane_dupsFlagged.bam	SRR1385931	@dbgap@:reads/SRP012000/SRS635695/SRX593521/SRR1385931/SRR1385931.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMNY-09A-01D_TARGET-20-PATMNY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-20-PATMNY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Validation	TARGET-20-PATMNY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATMNY-10A-01D	DNA	EFO	SRS635695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATMNY-10A-01D A41656 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41656	SRX593521	"Specific Capture analysis of normal sample TARGET-20-PATMNY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-20	TARGET-20-PATMNY-10A-01D A41656 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41656_1_lane_dupsFlagged.bam	SRR1385931	@dbgap@:reads/SRP012000/SRS635695/SRX593521/SRR1385931/SRR1385931.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-20-PATMNY-09A-01D_TARGET-20-PATMNY-10A-01D.capture_dna.somatic.snv.vcf	3			
